scip-query 0.14.0 → 0.16.0

package/skills/scip-setup/SKILL.md

@@ -27,7 +27,7 @@ Load shared mechanics from [`../_shared/SKILL.md`](../_shared/SKILL.md).
 
 | Command | Purpose | When |
 | --- | --- | --- |
-| `scip-query setup --json` | Bootstrap this project: install agent skills, refresh the index, verify capabilities, and report health | Run setup: install skills, refresh the index, report health. |
+| `scip-query setup --json` | Bootstrap this project: enable automatic indexing, install agent skills, refresh the index, verify capabilities, and report health | Run setup: install skills, refresh the index, report health. |
 | `scip-query doctor` | Diagnose config, index freshness, dependency readiness, and project capabilities | Resolve blockers: human diagnostic for config, index, and dependencies. |
 | `scip-query status --json` | Show index status for this project | Resolve blockers: machine surface for freshness and config. |
 | `scip-query capabilities --matrix` | Report which evidence and verification capabilities are available in this project | Resolve blockers: which evidence/verification capabilities are available. |
@@ -56,6 +56,40 @@ This step is complete only when a clean working tree produces a finding-free `di
 2. Do not run `scip-query setup-ci` unless the user explicitly asks for CI setup.
 3. Treat unavailable capabilities as unproven, not clean.
 4. Keep `.scipquery.json` minimal and evidence-backed.
+5. Let setup install detected AST parser packages and supported indexers; do not
+   make users reproduce package-manager commands unless setup reports a blocker.
+6. A demand-started service or Rust helper in `stopped` state can still be
+   correctly configured. Availability comes from capabilities; lifecycle state
+   only says whether work currently keeps the helper awake.
+
+## What Setup Owns
+
+`scip-query setup` is the bootstrap orchestrator. In a terminal it opens an
+interactive checklist by default. For an agent or script, `scip-query setup
+--json` runs the recommended non-interactive path and returns every result.
+
+The command:
+
+- detects supported project languages and lets a terminal user select them;
+- installs or repairs supported language indexers when a safe installer exists;
+- installs the Tree-sitter runtime and detected language grammars from the
+  versions pinned by the installed scip-query package;
+- installs bundled agent skills and checkout-local Codex/Claude hooks unless
+  explicitly skipped;
+- enables demand-started automatic incremental indexing unless the repository
+  has or selects an explicit opt-out;
+- builds or reuses language/project shards and publishes one atomic SQLite
+  generation with recovery state;
+- starts or reuses the clean-idle project service and verifies its lifecycle;
+- checks TypeScript and Rust semantic readiness, compiler/checker readiness,
+  representative commands, and optional health output;
+- reports repository, checkout, user-environment, and rebuildable runtime state
+  separately.
+
+Do not manually install AST grammar packages before trying setup. If npm uses
+script approval and native packages remain unavailable, report the pending
+packages and ask the user to approve them; a package must not approve its own
+install scripts.
 
 ## Workflow
 
@@ -75,6 +109,11 @@ This step is complete only when the repository root and runnable `scip-query` co
 scip-query setup --json
 ```
 
+When a human is operating the terminal, prefer plain `scip-query setup` so they
+can review the checklist with arrow keys and Space. Use `scip-query setup --yes`
+to accept recommended defaults without prompting. JSON mode is intentionally
+non-interactive and suitable for agents.
+
 Use `scip-query setup --no-hooks --json` when project-local Codex or Claude Code lifecycle hooks should not be written. Use `scip-query setup --git-hook --json` only when the user wants the local pre-commit diff gate.
 
 This step is complete only when setup reports ready, partial, or blocked and names every written, skipped, or blocked artifact.
@@ -92,15 +131,72 @@ scip-query config-validate --json
 
 This step is complete only when each blocker is fixed, unavailable with reason, or waiting on a named external action.
 
-### 4. Calibrate config only when needed
+### 4. Verify the language-specific optimal path
+
+#### TypeScript, JavaScript, and Vue
+
+Require all applicable capability rows to explain their state:
+
+- `scip-typescript` is runnable for SCIP indexing;
+- the detected Tree-sitter TypeScript/JavaScript parser is available for source
+  facts;
+- ts-morph semantic readiness is available for TypeScript;
+- the demand-started service is enabled and status exposes TypeScript semantic
+  and TypeScript index session counters.
+
+For a real multi-project TypeScript monorepo, set
+`indexer.typescript.projectMode: "workspace"`. This makes project/tsconfig
+boundaries the sub-shards: a changed project and its project-reference,
+workspace-package, or tsconfig-path dependents rebuild while unrelated project
+shards are reused. Use `indexer.typescript.projects` only when automatic
+discovery is too broad; a non-empty list is authoritative. Do not enable
+workspace mode for a single-project repository merely to seek speed—the normal
+incremental document producer and persistent ts-morph service already reuse
+unchanged work.
+
+#### Rust
+
+Require these distinct facts:
+
+- `rust-analyzer` is runnable and supports `rust-analyzer scip` for indexing;
+- the Tree-sitter Rust grammar is available for source facts;
+- Rust semantic readiness is available for compiler-backed references,
+  callees, signatures, and module/use evidence;
+- status reports the durable Rust transport with worker fallback. `stopped` is
+  healthy when no semantic request currently needs the clean-idle helper.
+
+If rust-analyzer is missing and rustup is available, setup can run `rustup
+component add rust-analyzer`. `SCIP_RUST_SEMANTIC_DURABLE_SESSION=0` is an
+explicit worker-only fallback, not the optimal default.
+
+#### Other languages
+
+Trust the capability matrix, not a language name. Setup may install supported
+indexers automatically (for example Python or Go), may provide only source
+facts through a detected Tree-sitter grammar, or may report a manual install
+URL. A missing semantic provider must be reported as unsupported, never as a
+clean semantic analysis.
+
+Verification:
+
+```bash
+scip-query status --capabilities
+scip-query reindex --json
+scip-query watch --status --json
+```
+
+This step is complete only when every selected language has an explicit
+indexing/source/semantic/checker verdict and the published generation is fresh.
+
+### 5. Calibrate config only when needed
 
 Run `scip-query init` only when `.scipquery.json` is absent and the project needs config. Add settings only for observed repo facts: explicit languages, indexer projects, entry roots, declared couplings, locality boundaries, or accepted suppressions.
 
-For TypeScript monorepos, prefer `indexer.typescript.projectMode: "workspace"` when multiple project shards are real. Add `indexerConcurrency` only when measured cold-index timing or memory pressure justifies it.
+For TypeScript monorepos, prefer `indexer.typescript.projectMode: "workspace"` when multiple project shards are real. Add `indexerConcurrency` only when measured cold-index timing or memory pressure justifies it. Keep `watch.enabled: true` for the designed demand-started lifecycle unless the user explicitly opts out.
 
 This step is complete only when config validates and every setting has a reason.
 
-### 5. Hand off cleanup
+### 6. Hand off cleanup
 
 After setup, invoke `scip-cleanup-audit` when the user wants a report or `scip-cleanup-improve` when the user wants autonomous cleanup.
 
@@ -116,6 +212,10 @@ Health:
 - dossier:
 Written or changed:
 - files:
+Runtime:
+- automatic indexing:
+- TypeScript project/index sessions:
+- Rust semantic transport/lifecycle:
 Next:
 - cleanup audit/improve, CI setup, or external blocker
 ```

package/skills/scip-verify/SKILL.md

@@ -2,18 +2,18 @@
 name: scip-verify
 description: Verify finished code, docs, config, refactor, cleanup, setup, React, Vue, or API changes with scip-query. Use before committing or when the user asks whether a change is wired, safe, regression-free, or ready.
 commands:
-  - template: "scip-query doctor"
-    when: "Prove the workspace: index freshness and dependency readiness."
-  - template: "scip-query status --capabilities"
-    when: "Prove the workspace: which evidence and verification capabilities are available."
-  - template: "scip-query diff-impact --json"
-    when: "Assess the diff: changed symbols and downstream consumers."
-  - template: "scip-query diff-gate --json"
-    when: "Run the gate: the primary blocker for diff-specific risk."
-  - template: "scip-query health --baseline"
-    when: "Check health: compare findings against the committed baseline."
-  - template: "scip-query doc-drift --json --full"
-    when: "Check docs: run when docs, AGENTS.md, or command surfaces changed."
+  - template: 'scip-query doctor'
+    when: 'Prove the workspace: index freshness and dependency readiness.'
+  - template: 'scip-query status --capabilities'
+    when: 'Prove the workspace: which evidence and verification capabilities are available.'
+  - template: 'scip-query diff-impact --json'
+    when: 'Assess the diff: changed symbols and downstream consumers.'
+  - template: 'scip-query diff-gate --json'
+    when: 'Run the gate: the primary blocker for diff-specific risk.'
+  - template: 'scip-query health --baseline'
+    when: 'Check health: compare findings against the committed baseline.'
+  - template: 'scip-query doc-drift --json --full'
+    when: 'Check docs: run when docs, AGENTS.md, or command surfaces changed.'
 ---
 
 # scip-verify
@@ -82,9 +82,14 @@ If it reports findings, fix them or record the acceptance reason. If a suppressi
 
 ```bash
 scip-query suppress <id> --reason "<specific reason>"
-scip-query config-validate
 ```
 
+`suppress` writes one file per suppression under `.scipquery/suppressions/` —
+commit that file with your change. Suppressing is a real decision, not a
+bypass: every suppression counts against that detector's precision in
+`scip-query effectiveness`, while a same-HEAD clean rerun after fixing the
+finding earns verified credit. Prefer the fix whenever the finding is real.
+
 This step is complete only when `diff-gate` passes or every finding has a durable explanation.
 
 ### 5. Check health, docs, and config when relevant
@@ -117,23 +122,29 @@ End with:
 Verification: PASS/FAIL
 
 Environment:
+
 - doctor:
 - status:
 
 Diff:
+
 - changed files/symbols:
 - unexpected blast radius:
 
 Postchecks:
+
 - <command>: <result>
 
 Gate:
+
 - `scip-query diff-gate --json`: <result>
 
 Health/docs/config:
+
 - <commands and results>
 
 Remaining risk:
+
 - <accepted findings, unavailable capabilities, or checks not run>
 ```
 

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package/dist/chunk-6KDOYKCB.js

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- * Generated by 'scip-query twin-ab'. scip-integrity-audit drill 5
- * ("cross-examine same-concept twins"): where one concept is computed in
- * more than one place, feed both the same input and require the same
- * answer. Disagreement between twins means at least one is wrong \u2014
- * determine which before consolidating.
- *
- * Twin A: ${t.shortName}  (${t.file}:${t.startLine+1})
- *   ${t.signature??"(signature unavailable)"}
- * Twin B: ${n.shortName}  (${n.file}:${n.startLine+1})
- *   ${n.signature??"(signature unavailable)"}
- * ${s}
- *
- * Fill in the TODO input table below with inputs both twins should agree
- * on, then run this file with vitest.
- */
-import { describe, expect, it } from 'vitest';
-import { ${t.shortName} as twinA } from '${i}';
-import { ${n.shortName} as twinB } from '${r}';
-
-// TODO: fill in shared inputs both twins should agree on \u2014 one arg array per call.
-const inputs: any[][] = [
-  // [/* arg1, arg2, ... */],
-];
-
-// Cast to a variadic signature so the input table can hold any arg shape \u2014
-// the real twins have fixed, non-rest parameter lists, and TS rejects
-// spreading a generic args array into those (TS2556) even when the array
-// itself is 'any'; casting the callee's signature, not the args, satisfies
-// the checker without weakening the twins' real exported types elsewhere.
-const callA = twinA as (...callArgs: any[]) => any;
-const callB = twinB as (...callArgs: any[]) => any;
-
-describe.skipIf(inputs.length === 0)('twin-ab: ${t.shortName} vs ${n.shortName}', () => {
-  it.each(inputs)('agrees on input %#', (...args) => {
-    expect(callA(...args)).toEqual(callB(...args));
-  });
-});
-`}export{O as a,I as b};
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package/dist/chunk-6KMTPNZL.js

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