scip-query 0.11.0 → 0.13.0

package/dist/reindex.js

@@ -1,10 +1,10 @@
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-`),k(n,e)}function dt(e,t){try{let n=JSON.parse(D(e,"utf-8"));if(n.version!==2&&n.version!==3)return;pt(e,{...n,lastRefresh:t})}catch{}}function oe(e){return{trigger:e.trigger??{kind:"unknown"},result:e.result,startedAt:new Date(e.start).toISOString(),completedAt:new Date().toISOString(),durationMs:Date.now()-e.start,indexedLanguages:e.languages?[...e.languages]:void 0,skipped:e.skipped?[...e.skipped]:void 0,error:e.error}}function S(e){return JSON.stringify(e)}export{be as INDEXER_CONFIGS,ge as augmentAuxiliaryDocuments,Mr as augmentVueResolvedReferences,x as auxiliaryDocumentsAugmentationStage,F as describeIndexerBinary,A as detectLanguages,w as getIndexerConfig,K as getIndexerExecutionEnv,R as isBinaryAvailable,H as isIndexerInstalled,C as mergeScipFiles,xe as mergeScipIndexes,Yo as reindex,v as resolveIndexerBinary,z as resolveProjectLocalIndexerBinary,y as runPostIndexAugmentation,X as tryInstallIndexer,V as tryInstallScipCli,tt as vueResolvedReferencesAugmentationStage};
+`))}function xi(e,t,n){e.length>1?(n(`Merging ${e.length} language indexes...`),L(e.map(r=>r.scipPath),t)):e[0].scipPath!==t&&k(e[0].scipPath,t)}function Si(e,t,n,r){if(r("Converting to SQLite..."),!F(e))throw new Error(`SCIP index not found at ${e} after indexing`);try{let i=Oe(e);i.removedDefinitionOccurrences>0&&r(`Sanitized ${i.removedDefinitionOccurrences} invalid definition occurrences across ${i.touchedDocuments} documents before SQLite conversion.`);let o=E();if(!o)throw new Error("scip CLI is not available");Kr(o,["expt-convert","--output",t,e],{env:n,stdio:"pipe",maxBuffer:50*1024*1024})}catch(i){let o=i instanceof Error?i.message:String(i);throw new Error(`Failed to convert SCIP index to SQLite: ${o}`,{cause:i})}}function gt(e,t,n){let r=ni(e)||".scip",i=D(e,r);return m(f(e),`${i}.${n+1}.${t}${r}`)}async function Ri(e,t){for(let n=0;n<2;n++){let r=Pi(e,t);if(r)return r;let i=vi(e);if(i&&ki(t.trigger,i)){if(t.onStatus(`Manual reindex preempting watcher refresh started at ${i.startedAt}.`),!await ji(i.pid))throw new Error(`Could not confirm the watcher's in-progress reindex (pid ${i.pid}) terminated for ${f(e)}; refusing to steal an active lock.`);I(e,{force:!0});continue}if(i&&!oe(i.pid)){I(e,{force:!0});continue}throw new Error(`Another scip-query reindex is already running for ${f(e)}.`)}throw new Error(`Could not acquire scip-query reindex lock for ${f(e)}.`)}function Pi(e,t){let n;try{n=ei(e,"wx")}catch(i){if((typeof i=="object"&&i&&"code"in i?i.code:void 0)==="EEXIST")return null;throw i}let r={version:1,pid:process.pid,projectRoot:t.projectRoot,startedAt:new Date().toISOString(),trigger:t.trigger};return ut(n,JSON.stringify(r)+`
+`),()=>{try{Yr(n)}finally{I(e,{force:!0})}}}function vi(e){try{let t=JSON.parse(T(e,"utf-8"));return typeof t.pid!="number"||!Number.isInteger(t.pid)||t.pid<=0?null:{version:1,pid:t.pid,projectRoot:typeof t.projectRoot=="string"?t.projectRoot:f(e),startedAt:typeof t.startedAt=="string"?t.startedAt:"unknown",trigger:t.trigger}}catch{return null}}function ki(e,t){return e?.kind==="manual-cli"&&Ii(t?.trigger)}function Ii(e){return e?.kind==="watch-source"||e?.kind==="watch-git-head"||e?.kind==="watch-git-index"||e?.kind==="watch-git-state"}async function ji(e){return st(e,"SIGTERM"),await at(e,2e3)?!0:(st(e,"SIGKILL"),at(e,1e3))}function st(e,t){try{process.kill(-e,t)}catch{try{process.kill(e,t)}catch{}}}async function at(e,t){let n=Date.now()+t;for(;Date.now()<n;){if(!oe(e))return!0;await wi(50)}return!oe(e)}function oe(e){try{return process.kill(e,0),!0}catch{return!1}}function wi(e){return new Promise(t=>setTimeout(t,e))}function Li(e){ne(e.tempOutputScip,e.outputScip),ne(e.tempOutputDb,e.outputDb),ne(e.tempMetaPath,e.metaPath)}function ne(e,t){I(`${t}.tmp-replace`,{force:!0}),k(e,`${t}.tmp-replace`),k(`${t}.tmp-replace`,t)}function Ci(e,t,n){return{version:2,languages:[...t].sort(),pnpmWorkspaces:dt(n),typescriptProjectMode:n.typescriptProjectMode??"single",typescriptProjects:_(n.typescriptProjects),clojureConfigPath:pt(n.clojureConfigPath),files:P(e)}}function se(e,t,n){return Object.fromEntries(t.map(r=>{let i=w(r).markerFiles,o=r==="typescript"?{typescriptProjectMode:n.typescriptProjectMode??"single",typescriptProjects:_(n.typescriptProjects)}:{typescriptProjectMode:"single",typescriptProjects:[]},s=r==="clojure"?pt(n.clojureConfigPath):void 0;return[r,{version:2,languages:[r],pnpmWorkspaces:r==="typescript"&&dt(n),...o,clojureConfigPath:s,files:P(e,{language:r,markerFiles:i})}]}))}function pt(e){return e?.trim()||void 0}function dt(e){return e.typescriptProjectMode!=="workspace"&&e.pnpmWorkspaces===!0}function ae(e,t){return m(f(e),"language-indexes",`${t}.scip`)}function Oi(e,t){try{let n=JSON.parse(T(e,"utf-8"));return(n.version===2||n.version===3)&&n.status==="complete"&&x(n.fingerprint)===x(t)&&x([...n.indexedLanguages??[]].sort())===x(t.languages)}catch{return!1}}function ft(e,t){let n=`${e}.tmp-${process.pid}-${Date.now()}`;ut(n,`${JSON.stringify(t,null,2)}
+`),k(n,e)}function mt(e,t){try{let n=JSON.parse(T(e,"utf-8"));if(n.version!==2&&n.version!==3)return;ft(e,{...n,lastRefresh:t})}catch{}}function ue(e){return{trigger:e.trigger??{kind:"unknown"},result:e.result,startedAt:new Date(e.start).toISOString(),completedAt:new Date().toISOString(),durationMs:Date.now()-e.start,indexedLanguages:e.languages?[...e.languages]:void 0,skipped:e.skipped?[...e.skipped]:void 0,error:e.error}}function x(e){return JSON.stringify(e)}export{Re as INDEXER_CONFIGS,fe as augmentAuxiliaryDocuments,Vr as augmentVueResolvedReferences,S as auxiliaryDocumentsAugmentationStage,M as describeIndexerBinary,A as detectLanguages,w as getIndexerConfig,K as getIndexerExecutionEnv,R as isBinaryAvailable,H as isIndexerInstalled,L as mergeScipFiles,Pe as mergeScipIndexes,os as reindex,v as resolveIndexerBinary,G as resolveProjectLocalIndexerBinary,y as runPostIndexAugmentation,X as tryInstallIndexer,V as tryInstallScipCli,it as vueResolvedReferencesAugmentationStage};
 //# sourceMappingURL=reindex.js.map

package/dist/runtime.js

@@ -1,3 +1,3 @@
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-`),t}function m(r){return N(r,{recursive:!0}),r}import{execFileSync as Y,fork as K}from"child_process";import{statSync as H,watch as X}from"fs";import{join as B,relative as V}from"path";import z from"ignore";var C=class{projectRoot;config;watchConfig;languages;pnpmWorkspaces;typescriptProjectMode;typescriptProjects;clojureConfigPath;indexerConcurrency;onStatus;onReindexComplete;onError;status={state:"idle"};debounceTimer=null;cooldownTimer=null;dirty=!1;changedFiles=0;pendingTrigger=null;reindexInFlight=!1;lastReindexEnd=0;fsWatchers=[];gitPollTimer=null;lastGitState=null;gitignoreFilter;extraIgnore;stopped=!1;constructor(e){this.projectRoot=e.projectRoot,this.config=e.config,this.watchConfig=E(e.config),this.languages=e.languages,this.pnpmWorkspaces=e.config.indexer?.typescript?.pnpmWorkspaces??!1,this.typescriptProjectMode=e.config.indexer?.typescript?.projectMode,this.typescriptProjects=e.config.indexer?.typescript?.projects,this.clojureConfigPath=e.config.indexer?.clojure?.configPath,this.indexerConcurrency=e.config.indexerConcurrency,this.onStatus=e.onStatus??(()=>{}),this.onReindexComplete=e.onReindexComplete??(()=>{}),this.onError=e.onError??(t=>console.error(t.message)),this.gitignoreFilter=k(e.projectRoot),this.extraIgnore=z(),this.watchConfig.ignore.length>0&&this.extraIgnore.add(this.watchConfig.ignore)}start(){this.stopped=!1,this.setStatus({state:"idle"}),this.startGitStatePolling();try{let e=X(this.projectRoot,{recursive:!0},(t,i)=>{i&&!this.stopped&&this.handleFileChange(i)});this.fsWatchers.push(e)}catch{this.onError(new Error("Failed to start file watcher. On Linux, you may need to increase inotify limits: sysctl -w fs.inotify.max_user_watches=524288"))}}stop(){this.stopped=!0;for(let e of this.fsWatchers)e.close();this.fsWatchers=[],this.clearDebounceTimer(),this.clearCooldownTimer(),this.clearGitPollTimer(),this.setStatus({state:"idle"})}handleFileChange(e){let t=V(this.projectRoot,B(this.projectRoot,e));t===".git"||t.startsWith(".git/")||this.gitignoreFilter.isIgnored(t)||this.extraIgnore.ignores(t)||e.endsWith("index.db")||e.endsWith("index.scip")||e.endsWith("index.db.tmp")||this.scheduleReindex({kind:"watch-source",detail:t})}scheduleReindex(e){if(this.pendingTrigger=J(this.pendingTrigger,e),this.changedFiles++,this.reindexInFlight){this.dirty=!0,this.setStatus({state:"indexing",startedAt:this.status.startedAt});return}if(this.status.state==="cooldown"){this.dirty=!0,this.setStatus({state:"cooldown",until:this.status.until,dirty:!0});return}this.clearDebounceTimer();let t=Date.now()+this.watchConfig.debounceMs;this.setStatus({state:"waiting",changedFiles:this.changedFiles,reindexAt:t}),this.debounceTimer=setTimeout(()=>{this.debounceTimer=null,this.triggerReindex()},this.watchConfig.debounceMs)}triggerReindex(){if(this.reindexInFlight||this.stopped)return;let e=Date.now()-this.lastReindexEnd;if(this.lastReindexEnd>0&&e<this.watchConfig.cooldownMs){let s=this.watchConfig.cooldownMs-e;this.dirty=!0;let o=Date.now()+s;this.setStatus({state:"cooldown",until:o,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped&&(this.dirty=!1,this.triggerReindex())},s);return}this.reindexInFlight=!0,this.dirty=!1,this.changedFiles=0;let t=this.pendingTrigger??{kind:"watch-source"};this.pendingTrigger=null;let i=Date.now();this.setStatus({state:"indexing",startedAt:i}),this.runReindex(t).then(s=>{if(this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onReindexComplete(s),this.dirty&&!this.stopped){let o=Date.now()+this.watchConfig.cooldownMs;this.setStatus({state:"cooldown",until:o,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped?(this.dirty=!1,this.triggerReindex()):this.setStatus({state:"idle"})},this.watchConfig.cooldownMs)}else this.setStatus({state:"idle"})}).catch(s=>{this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onError(s instanceof Error?s:new Error(String(s))),this.setStatus({state:"idle"})})}runReindex(e){return new Promise((t,i)=>{let s=Date.now(),o=y(this.projectRoot),n=Object.keys(o).length>0?o:this.config,c=S(this.projectRoot,n),a=n.indexer?.typescript,l=n.indexer?.clojure,d=K(new URL("./reindex-worker.js",import.meta.url).pathname,[],{detached:!0,env:{...process.env,SCIP_REINDEX_PROJECT_ROOT:this.projectRoot,SCIP_REINDEX_OUTPUT_SCIP:c.indexPath,SCIP_REINDEX_OUTPUT_DB:c.dbPath,SCIP_REINDEX_LANGUAGES:(n.languages??this.languages)?.join(",")??"",SCIP_REINDEX_INDEXER_CONCURRENCY:String(n.indexerConcurrency??this.indexerConcurrency??""),SCIP_REINDEX_PNPM_WORKSPACES:a?.pnpmWorkspaces??this.pnpmWorkspaces?"1":"",SCIP_REINDEX_TYPESCRIPT_CONFIG:JSON.stringify({projectMode:a?.projectMode??this.typescriptProjectMode,projects:a?.projects??this.typescriptProjects??[]}),SCIP_REINDEX_CLOJURE_CONFIG_PATH:l?.configPath??this.clojureConfigPath??"",SCIP_REINDEX_TRIGGER_KIND:e.kind,SCIP_REINDEX_TRIGGER_DETAIL:e.detail??""},stdio:"pipe"});d.on("exit",p=>{p===0?t(Date.now()-s):i(new Error(`Reindex worker exited with code 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+`),t}function m(r){return N(r,{recursive:!0}),r}import{execFileSync as Y,fork as K}from"child_process";import{statSync as H,watch as X}from"fs";import{join as B,relative as V}from"path";import z from"ignore";var C=class{projectRoot;config;watchConfig;languages;pnpmWorkspaces;typescriptProjectMode;typescriptProjects;clojureConfigPath;indexerConcurrency;onStatus;onReindexComplete;onError;status={state:"idle"};debounceTimer=null;cooldownTimer=null;dirty=!1;changedFiles=0;pendingTrigger=null;reindexInFlight=!1;lastReindexEnd=0;fsWatchers=[];gitPollTimer=null;lastGitState=null;gitignoreFilter;extraIgnore;stopped=!1;constructor(e){this.projectRoot=e.projectRoot,this.config=e.config,this.watchConfig=E(e.config),this.languages=e.languages,this.pnpmWorkspaces=e.config.indexer?.typescript?.pnpmWorkspaces??!1,this.typescriptProjectMode=e.config.indexer?.typescript?.projectMode,this.typescriptProjects=e.config.indexer?.typescript?.projects,this.clojureConfigPath=e.config.indexer?.clojure?.configPath,this.indexerConcurrency=e.config.indexerConcurrency,this.onStatus=e.onStatus??(()=>{}),this.onReindexComplete=e.onReindexComplete??(()=>{}),this.onError=e.onError??(t=>console.error(t.message)),this.gitignoreFilter=k(e.projectRoot),this.extraIgnore=z(),this.watchConfig.ignore.length>0&&this.extraIgnore.add(this.watchConfig.ignore)}start(){this.stopped=!1,this.setStatus({state:"idle"}),this.startGitStatePolling();try{let e=X(this.projectRoot,{recursive:!0},(t,i)=>{i&&!this.stopped&&this.handleFileChange(i)});this.fsWatchers.push(e)}catch{this.onError(new Error("Failed to start file watcher. 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t=Date.now()+this.watchConfig.debounceMs;this.setStatus({state:"waiting",changedFiles:this.changedFiles,reindexAt:t}),this.debounceTimer=setTimeout(()=>{this.debounceTimer=null,this.triggerReindex()},this.watchConfig.debounceMs)}triggerReindex(){if(this.reindexInFlight||this.stopped)return;let e=Date.now()-this.lastReindexEnd;if(this.lastReindexEnd>0&&e<this.watchConfig.cooldownMs){let s=this.watchConfig.cooldownMs-e;this.dirty=!0;let o=Date.now()+s;this.setStatus({state:"cooldown",until:o,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped&&(this.dirty=!1,this.triggerReindex())},s);return}this.reindexInFlight=!0,this.dirty=!1,this.changedFiles=0;let t=this.pendingTrigger??{kind:"watch-source"};this.pendingTrigger=null;let i=Date.now();this.setStatus({state:"indexing",startedAt:i}),this.runReindex(t).then(s=>{if(this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onReindexComplete(s),this.dirty&&!this.stopped){let o=Date.now()+this.watchConfig.cooldownMs;this.setStatus({state:"cooldown",until:o,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped?(this.dirty=!1,this.triggerReindex()):this.setStatus({state:"idle"})},this.watchConfig.cooldownMs)}else this.setStatus({state:"idle"})}).catch(s=>{this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onError(s instanceof Error?s:new Error(String(s))),this.setStatus({state:"idle"})})}runReindex(e){return new Promise((t,i)=>{let s=Date.now(),o=y(this.projectRoot),n=Object.keys(o).length>0?o:this.config,c=S(this.projectRoot,n),a=n.indexer?.typescript,l=n.indexer?.clojure,d=K(new URL("./reindex-worker.js",import.meta.url).pathname,[],{detached:!0,env:{...process.env,SCIP_REINDEX_PROJECT_ROOT:this.projectRoot,SCIP_REINDEX_OUTPUT_SCIP:c.indexPath,SCIP_REINDEX_OUTPUT_DB:c.dbPath,SCIP_REINDEX_LANGUAGES:(n.languages??this.languages)?.join(",")??"",SCIP_REINDEX_INDEXER_CONCURRENCY:String(n.indexerConcurrency??this.indexerConcurrency??""),SCIP_REINDEX_PNPM_WORKSPACES:a?.pnpmWorkspaces??this.pnpmWorkspaces?"1":"",SCIP_REINDEX_TYPESCRIPT_CONFIG:JSON.stringify({projectMode:a?.projectMode??this.typescriptProjectMode,projects:a?.projects??this.typescriptProjects??[]}),SCIP_REINDEX_CLOJURE_CONFIG_PATH:l?.configPath??this.clojureConfigPath??"",SCIP_REINDEX_TRIGGER_KIND:e.kind,SCIP_REINDEX_TRIGGER_DETAIL:e.detail??""},stdio:"pipe"});d.on("exit",p=>{p===0?t(Date.now()-s):i(new Error(`Reindex worker exited with code ${p}`))}),d.on("error",i)})}setStatus(e){this.status=e,this.onStatus(e)}clearDebounceTimer(){this.debounceTimer&&(clearTimeout(this.debounceTimer),this.debounceTimer=null)}clearCooldownTimer(){this.cooldownTimer&&(clearTimeout(this.cooldownTimer),this.cooldownTimer=null)}startGitStatePolling(){this.lastGitState=this.readGitState(),this.lastGitState&&(this.gitPollTimer=setInterval(()=>this.pollGitState(),this.watchConfig.gitPollMs),this.gitPollTimer.unref?.())}pollGitState(){let e=this.lastGitState,t=this.readGitState();if(!e||!t||this.stopped){this.lastGitState=t;return}this.lastGitState=t;let i=e.head!==t.head,s=e.indexPath!==t.indexPath||e.indexMtimeMs!==t.indexMtimeMs||e.indexSize!==t.indexSize;i&&s?this.scheduleReindex({kind:"watch-git-state",detail:"HEAD and index changed"}):i?this.scheduleReindex({kind:"watch-git-head",detail:"HEAD changed"}):s&&this.scheduleReindex({kind:"watch-git-index",detail:t.indexPath??"index changed"})}readGitState(){let e=j(this.projectRoot,["rev-parse","--git-path","index"]);if(!e)return null;let t={head:j(this.projectRoot,["rev-parse","--verify","HEAD"]),indexPath:e};try{let i=H(e);t.indexMtimeMs=i.mtimeMs,t.indexSize=i.size}catch{t.indexMtimeMs=void 0,t.indexSize=void 0}return t}clearGitPollTimer(){this.gitPollTimer&&(clearInterval(this.gitPollTimer),this.gitPollTimer=null)}};function j(r,e){try{return Y("git",["-C",r,...e],{encoding:"utf-8",stdio:["ignore","pipe","ignore"]}).trim()}catch{return}}function J(r,e){return r?r.kind===e.kind?r.detail===e.detail?r:{kind:r.kind,detail:"multiple changes"}:{kind:"watch-git-state",detail:`${r.kind}, ${e.kind}`}:e}import{existsSync as v,mkdirSync as Q,symlinkSync as Z,readlinkSync as b,unlinkSync as T,readdirSync as ee}from"fs";import{join as h,dirname as w,resolve as g,relative as te,isAbsolute as re}from"path";import{homedir as x,platform as ie}from"os";import{fileURLToPath as se}from"url";var ne=ie()==="win32",_=["_shared","scip-query","scip-setup","scip-calibrate","scip-cleanup-audit","scip-cleanup-improve","scip-integrity-audit","scip-twin-drift","scip-claim-audit","scip-probe-reachability","scip-hyper-optimization","scip-api-impact","scip-concrete-plan","scip-conductor","scip-debug","scip-explore","scip-triage-issue","scip-diagram","scip-doc-reconcile","scip-directory-architecture","scip-maintainability","scip-react-maintainability","scip-vue-maintainability","scip-verify","scip-language-playbook","scip-tla-model-system"];function oe(r={}){let e=r.quiet?()=>{}:console.log,t=se(import.meta.url),i=g(w(t),"..","skills"),s=[h(x(),".claude","skills"),h(x(),".codex","skills"),h(x(),".agents","skills")],o={installed:[],skipped:[],alreadyLinked:[],pruned:[]};for(let n of s){let c=w(n);if(!v(c))continue;Q(n,{recursive:!0});let a=ce(n);ae(n,i,a,o,e);for(let l of _){let d=h(i,l),p=h(n,l);if(!v(d)){o.skipped.push(`${a}/${l}`);continue}if(v(p)){try{let I=b(p);if(g(I)===g(d)){o.alreadyLinked.push(`${a}/${l}`),e(`  ok:   ${l} \u2192 ${a} (already linked)`);continue}}catch{o.skipped.push(`${a}/${l}`),e(`  skip: ${l} \u2192 ${a} (exists, not a symlink)`);continue}T(p)}Z(d,p,ne?"junction":"dir"),o.installed.push(`${a}/${l}`),e(`  done: ${l} \u2192 ${a}`)}}return o}function ae(r,e,t,i,s){let o=new Set(_);for(let n of ee(r)){if(o.has(n))continue;let c=h(r,n),a;try{a=g(w(c),b(c))}catch{continue}le(a,e)&&(T(c),i.pruned.push(`${t}/${n}`),s(`  prune: ${n} \u2192 ${t} (removed stale scip-query skill link)`))}}function le(r,e){let t=te(g(e),g(r));return t===""||!t.startsWith("..")&&!re(t)}function ce(r){return r.includes(".codex")?"Codex":r.includes(".agents")?"Agents":"Claude"}export{C as Watcher,M as getScipVersion,q as initProjectConfig,oe as installSkills,$ as isScipInstalled,y as loadProjectConfig,A as printScipInstallInstructions,S as resolveIndexStoragePaths};
 //# sourceMappingURL=runtime.js.map

package/docs/COMMAND_REFERENCE.md

@@ -8,7 +8,7 @@ This syntax summary is generated from the CLI command descriptors. Keep workflow
 
 | Command | Description | Options |
 |---|---|---|
-| `reindex` | Index the codebase and convert to SQLite | `-l, --language <lang>`<br>`--pnpm-workspaces`<br>`--force`<br>`--allow-partial`<br>`--indexer-concurrency <n>` |
+| `reindex` | Index the codebase and convert to SQLite | `-l, --language <lang>`<br>`--pnpm-workspaces`<br>`--force`<br>`--allow-partial`<br>`--indexer-concurrency <n>`<br>`--json` |
 | `augment-sources` | Add source files skipped by upstream SCIP indexers to the SQLite documents table | - |
 | `augment-vue` | Add compiler-resolved Vue SFC references to the SQLite index using Volar | `--project <tsconfig>` |
 
@@ -74,6 +74,9 @@ This syntax summary is generated from the CLI command descriptors. Keep workflow
 | `duplicate-bodies` | Find exact duplicate small-body candidates across files | `-s, --scope <path>`<br>`--max-loc <n>`<br>`--min-loc <n>`<br>`-n, --limit <n>`<br>`--full`<br>`--json` |
 | `twin-drift` | Twin drift candidates: same-name (or near-name) functions across files with diverged bodies | `-s, --scope <path>`<br>`--min-similarity <n>`<br>`--include-homonyms`<br>`-n, --limit <n>`<br>`--full`<br>`--json` |
 | `twin-ab <symbolA> <symbolB>` | Generate a behavioral A/B scaffold comparing two same-concept twins (scip-integrity-audit drill 5) — a ready-to-fill vitest file, not an auto-executor | `--out <path>`<br>`--force`<br>`--json` |
+| `not-implemented` | Reachable placeholder stub candidates (throw-stub, TODO+return-default, empty body) — production callers can actually reach these; an unreachable stub is dead's job, not this one's | `-s, --scope <path>`<br>`-n, --limit <n>`<br>`--full`<br>`--json` |
+| `decorative-checkers` | Decorative checker candidates: validate*/verify*/check*/assert*/is*/has* callables with no reachable failure exit anywhere in their body | `-s, --scope <path>`<br>`-n, --limit <n>`<br>`--full`<br>`--json` |
+| `test-quality` | Test-quality candidates: assertion-free it/test bodies, a skipped-test ledger with git-blame age, and mock-echo tests that assert the same literal they stubbed into a mock | `-s, --scope <path>`<br>`-n, --limit <n>`<br>`--rot-days <n>`<br>`--full`<br>`--json` |
 | `similar-signatures` | Find functions with near-identical type signatures (same shape) | `-s, --scope <path>`<br>`--min-loc <n>`<br>`--max-shape-frequency <n>`<br>`-n, --limit <n>`<br>`--full`<br>`--json` |
 
 ### Graph
@@ -104,7 +107,7 @@ This syntax summary is generated from the CLI command descriptors. Keep workflow
 
 | Command | Description | Options |
 |---|---|---|
-| `tla <operation> [spec]` | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | `--map <file>`<br>`--config <file>`<br>`--checker <mode>`<br>`--tla-tools <jar>`<br>`--apalache <binary>`<br>`--length <n>`<br>`--timeout-ms <n>`<br>`--trace <file>`<br>`--next <operator>`<br>`--allow-unknown`<br>`--out <path>`<br>`--module-name <name>`<br>`--force`<br>`--full`<br>`--json` |
+| `tla <operation> [spec]` | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | `--map <file>`<br>`--config <file>`<br>`--checker <mode>`<br>`--tla-tools <jar>`<br>`--apalache <binary>`<br>`--length <n>`<br>`--timeout-ms <n>`<br>`--trace <file>`<br>`--next <operator>`<br>`--coverage`<br>`--allow-unknown`<br>`--out <path>`<br>`--module-name <name>`<br>`--force`<br>`--full`<br>`--json` |
 
 ### Planning
 
@@ -125,7 +128,7 @@ This syntax summary is generated from the CLI command descriptors. Keep workflow
 | Command | Description | Options |
 |---|---|---|
 | `bench` | Benchmark indexing and command runtimes for this repository | `--json`<br>`--cold-index`<br>`--include-heavy`<br>`--command <cmd>`<br>`--timeout-ms <n>`<br>`--progress`<br>`--profile`<br>`--profile-out <path>` |
-| `install-skills` | Install skills (_shared, scip-query, scip-setup, scip-cleanup-audit, scip-cleanup-improve, scip-integrity-audit, scip-twin-drift, scip-claim-audit, scip-probe-reachability, scip-hyper-optimization, scip-api-impact, scip-concrete-plan, scip-conductor, scip-debug, scip-explore, scip-triage-issue, scip-diagram, scip-doc-reconcile, scip-directory-architecture, scip-maintainability, scip-react-maintainability, scip-vue-maintainability, scip-verify, scip-language-playbook, scip-tla-model-system) into Claude Code, Codex, and shared agent roots | - |
+| `install-skills` | Install skills (_shared, scip-query, scip-setup, scip-calibrate, scip-cleanup-audit, scip-cleanup-improve, scip-integrity-audit, scip-twin-drift, scip-claim-audit, scip-probe-reachability, scip-hyper-optimization, scip-api-impact, scip-concrete-plan, scip-conductor, scip-debug, scip-explore, scip-triage-issue, scip-diagram, scip-doc-reconcile, scip-directory-architecture, scip-maintainability, scip-react-maintainability, scip-vue-maintainability, scip-verify, scip-language-playbook, scip-tla-model-system) into Claude Code, Codex, and shared agent roots | - |
 | `setup-hooks` | Install or refresh project-local Codex and Claude Code lifecycle hooks | `--shared`<br>`--remove`<br>`--force`<br>`--json` |
 | `check-deps` | Check whether scip-query and the detected language indexers are actually runnable | - |
 | `capabilities` | Report which evidence and verification capabilities are available in this project | `--matrix`<br>`--json` |

package/docs/analyzer-inventory.md

@@ -238,3 +238,19 @@ dimension), and the public command surface gained `twin-ab` (behavioral A/B
 scaffold generator for scip-integrity-audit drill 5) in `queryCommandOrder`
 and `PUBLIC_QUERY_ENTRIES`. All three files still own their respective
 canonical lists; only the list contents grew.
+
+## 2026-07-03 Integrity Detectors
+
+The public command surface gained three integrity detectors (calibrated
+against Vega_2.0 and Stable_Management before wiring — see
+`docs/validation/2026-07-03-integrity-detector-calibration.md`):
+`not-implemented` (placeholder stubs reachable from production entry
+surfaces; mechanizes scip-integrity-audit drill 3's fallback autopsy),
+`decorative-checkers` (checker-named callables with no reachable failure
+exit; mechanizes drill 1), and `test-quality` (assertion-free tests,
+aged skips, mock-echo). All three are standalone commands only — none are
+wired into `HEALTH_PHASES` or `DIFF_GATE_CHECKS` per the calibration's
+wiring decisions (test-quality's health eligibility is ledgered as a
+followup). Registration files (`queryCommandOrder`,
+`PUBLIC_QUERY_ENTRIES`, `query-command-specs.ts`) still own their
+canonical lists; only the list contents grew.

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "scip-query",
-  "version": "0.11.0",
+  "version": "0.13.0",
   "description": "Evidence and verification for AI coding agents: map code, reuse concepts, finish migrations, and gate diffs.",
   "type": "module",
   "main": "dist/index.js",
@@ -89,6 +89,10 @@
       "import": "./dist/queries/dead.js",
       "types": "./dist/queries/dead.d.ts"
     },
+    "./queries/decorative-checkers": {
+      "import": "./dist/queries/decorative-checkers.js",
+      "types": "./dist/queries/decorative-checkers.d.ts"
+    },
     "./queries/deep-chains": {
       "import": "./dist/queries/deep-chains.js",
       "types": "./dist/queries/deep-chains.d.ts"
@@ -169,6 +173,10 @@
       "import": "./dist/queries/methods.js",
       "types": "./dist/queries/methods.d.ts"
     },
+    "./queries/not-implemented": {
+      "import": "./dist/queries/not-implemented.js",
+      "types": "./dist/queries/not-implemented.d.ts"
+    },
     "./queries/outline": {
       "import": "./dist/queries/outline.js",
       "types": "./dist/queries/outline.d.ts"
@@ -261,6 +269,10 @@
       "import": "./dist/queries/system.js",
       "types": "./dist/queries/system.d.ts"
     },
+    "./queries/test-quality": {
+      "import": "./dist/queries/test-quality.js",
+      "types": "./dist/queries/test-quality.d.ts"
+    },
     "./queries/trace": {
       "import": "./dist/queries/trace.js",
       "types": "./dist/queries/trace.d.ts"
@@ -346,7 +358,7 @@
   "optionalDependencies": {
     "@sourcegraph/scip-typescript": "^0.4.0",
     "scip-python-plus": "^0.7.4",
-    "scip-query-scip-windows": "0.11.0",
+    "scip-query-scip-windows": "0.13.0",
     "tree-sitter": "0.21.1",
     "tree-sitter-c": "0.23.2",
     "tree-sitter-c-sharp": "0.23.1",
@@ -372,5 +384,23 @@
     "typescript": "^5.7.0",
     "typescript-eslint": "^8.58.1",
     "vitest": "^3.0.0"
+  },
+  "allowScripts": {
+    "better-sqlite3@12.9.0": true,
+    "esbuild@0.27.7": true,
+    "fsevents@2.3.3": true,
+    "tree-sitter@0.21.1": true,
+    "tree-sitter-c@0.23.2": true,
+    "tree-sitter-c-sharp@0.23.1": true,
+    "tree-sitter-cpp@0.23.4": true,
+    "tree-sitter-java@0.23.5": true,
+    "tree-sitter-javascript@0.23.1": true,
+    "tree-sitter-kotlin@0.3.8": true,
+    "tree-sitter-php@0.23.12": true,
+    "tree-sitter-python@0.23.4": true,
+    "tree-sitter-ruby@0.23.1": true,
+    "tree-sitter-rust@0.23.1": true,
+    "tree-sitter-scala@0.24.0": true,
+    "tree-sitter-typescript@0.23.2": true
   }
 }

package/skills/_shared/SKILL.md

@@ -120,6 +120,9 @@ scip-query redundant-reexports # Find barrel re-exports that nobody imports thro
 scip-query duplicate-bodies # Find exact duplicate small-body candidates across files
 scip-query twin-drift # Twin drift candidates: same-name (or near-name) functions across files with diverged bodies
 scip-query twin-ab <symbolA> <symbolB> # Generate a behavioral A/B scaffold comparing two same-concept twins (scip-integrity-audit drill 5) — a ready-to-fill vitest file, not an auto-executor
+scip-query not-implemented # Reachable placeholder stub candidates (throw-stub, TODO+return-default, empty body) — production callers can actually reach these; an unreachable stub is dead's job, not this one's
+scip-query decorative-checkers # Decorative checker candidates: validate*/verify*/check*/assert*/is*/has* callables with no reachable failure exit anywhere in their body
+scip-query test-quality # Test-quality candidates: assertion-free it/test bodies, a skipped-test ledger with git-blame age, and mock-echo tests that assert the same literal they stubbed into a mock
 scip-query similar-signatures # Find functions with near-identical type signatures (same shape)
 ```
 
@@ -171,7 +174,7 @@ scip-query complexity <symbol> # Per-symbol complexity: branches, cyclomatic est
 
 ```bash
 scip-query bench # Benchmark indexing and command runtimes for this repository
-scip-query install-skills # Install skills (_shared, scip-query, scip-setup, scip-cleanup-audit, scip-cleanup-improve, scip-integrity-audit, scip-twin-drift, scip-claim-audit, scip-probe-reachability, scip-hyper-optimization, scip-api-impact, scip-concrete-plan, scip-conductor, scip-debug, scip-explore, scip-triage-issue, scip-diagram, scip-doc-reconcile, scip-directory-architecture, scip-maintainability, scip-react-maintainability, scip-vue-maintainability, scip-verify, scip-language-playbook, scip-tla-model-system) into Claude Code, Codex, and shared agent roots
+scip-query install-skills # Install skills (_shared, scip-query, scip-setup, scip-calibrate, scip-cleanup-audit, scip-cleanup-improve, scip-integrity-audit, scip-twin-drift, scip-claim-audit, scip-probe-reachability, scip-hyper-optimization, scip-api-impact, scip-concrete-plan, scip-conductor, scip-debug, scip-explore, scip-triage-issue, scip-diagram, scip-doc-reconcile, scip-directory-architecture, scip-maintainability, scip-react-maintainability, scip-vue-maintainability, scip-verify, scip-language-playbook, scip-tla-model-system) into Claude Code, Codex, and shared agent roots
 scip-query setup-hooks # Install or refresh project-local Codex and Claude Code lifecycle hooks
 scip-query check-deps # Check whether scip-query and the detected language indexers are actually runnable
 scip-query capabilities # Report which evidence and verification capabilities are available in this project