scip-query 0.10.10 → 0.10.12

package/dist/reindex.d.ts

@@ -1,6 +1,6 @@
-import { a as SupportedLanguage, I as IndexerConfig, T as TypeScriptProjectMode } from './config-types-BDIWAYzr.js';
-import { R as RefreshTrigger, L as LastRefreshMetadata } from './scip-cli-CnK9Va4O.js';
-export { t as tryInstallScipCli } from './scip-cli-CnK9Va4O.js';
+import { a as SupportedLanguage, I as IndexerConfig, T as TypeScriptProjectMode } from './config-types-dvHOz0zU.js';
+import { R as RefreshTrigger, L as LastRefreshMetadata } from './scip-cli-trnNvymv.js';
+export { t as tryInstallScipCli } from './scip-cli-trnNvymv.js';
 import { Index } from '@c4312/scip';
 
 /**
@@ -9,6 +9,24 @@ import { Index } from '@c4312/scip';
  */
 declare function detectLanguages(projectRoot: string): SupportedLanguage[];
 
+type PostIndexAugmentationFact = 'auxiliary-document' | 'synthetic-symbol' | 'source-mapped-occurrence' | 'definition-mention' | 'replacement-chunk' | 'fingerprint-cache';
+interface PostIndexAugmentationContext {
+    projectRoot: string;
+    dbPath: string;
+    onStatus?: (message: string) => void;
+}
+interface PostIndexAugmentationStage<Result> {
+    id: string;
+    facts: readonly PostIndexAugmentationFact[];
+    run(context: PostIndexAugmentationContext): Result;
+}
+declare function runPostIndexAugmentation<Result>(stage: PostIndexAugmentationStage<Result>, context: PostIndexAugmentationContext): {
+    stageId: string;
+    facts: readonly PostIndexAugmentationFact[];
+    durationMs: number;
+    result: Result;
+};
+
 interface AugmentAuxiliaryDocumentsOptions {
     projectRoot: string;
     dbPath: string;
@@ -20,6 +38,9 @@ interface AugmentAuxiliaryDocumentsResult {
     inserted: number;
     existing: number;
 }
+declare function auxiliaryDocumentsAugmentationStage(opts?: {
+    extensions?: readonly string[];
+}): PostIndexAugmentationStage<AugmentAuxiliaryDocumentsResult>;
 /**
  * Add source files that upstream SCIP indexers skipped to the SQLite
  * documents table. Vue SFCs are the motivating case: scip-typescript can
@@ -41,6 +62,9 @@ interface AugmentVueResolvedOptions {
     tsconfig: string;
     onStatus?: (message: string) => void;
 }
+declare function vueResolvedReferencesAugmentationStage(opts: {
+    tsconfig: string;
+}): PostIndexAugmentationStage<AugmentVueResolvedResult>;
 declare function augmentVueResolvedReferences(opts: AugmentVueResolvedOptions): AugmentVueResolvedResult;
 
 /**
@@ -123,6 +147,8 @@ interface ReindexOptions {
     typescriptProjectMode?: TypeScriptProjectMode;
     /** Explicit TypeScript project roots or tsconfig paths for workspace mode. */
     typescriptProjects?: string[];
+    /** Optional scip-clojure config path, relative to project root unless absolute. */
+    clojureConfigPath?: string;
     /** Skip auto-install prompts */
     skipAutoInstall?: boolean;
     /** Reuse an existing index when tracked source inputs are unchanged (default true). */
@@ -159,4 +185,4 @@ interface ReindexResult {
  */
 declare function reindex(opts: ReindexOptions): Promise<ReindexResult>;
 
-export { INDEXER_CONFIGS, type ReindexOptions, type ReindexResult, augmentAuxiliaryDocuments, augmentVueResolvedReferences, describeIndexerBinary, detectLanguages, getIndexerConfig, getIndexerExecutionEnv, isBinaryAvailable, isIndexerInstalled, mergeScipFiles, mergeScipIndexes, reindex, resolveIndexerBinary, resolveProjectLocalIndexerBinary, tryInstallIndexer };
+export { INDEXER_CONFIGS, type ReindexOptions, type ReindexResult, augmentAuxiliaryDocuments, augmentVueResolvedReferences, auxiliaryDocumentsAugmentationStage, describeIndexerBinary, detectLanguages, getIndexerConfig, getIndexerExecutionEnv, isBinaryAvailable, isIndexerInstalled, mergeScipFiles, mergeScipIndexes, reindex, resolveIndexerBinary, resolveProjectLocalIndexerBinary, runPostIndexAugmentation, tryInstallIndexer, vueResolvedReferencesAugmentationStage };

package/dist/reindex.js

@@ -1,9 +1,10 @@
-import{a as x,b as F,f as E}from"./chunk-ONPCQ2PM.js";import{a as se}from"./chunk-UUBMFL3F.js";import{a as ie,b as oe}from"./chunk-A536TEU4.js";import"./chunk-64MNV6AB.js";import"./chunk-7S5E7KWT.js";import{execFileSync as Ar}from"child_process";import{closeSync as $r,copyFileSync as _r,existsSync as M,mkdirSync as te,mkdtempSync as Br,openSync as Wr,readFileSync as D,renameSync as k,rmSync as P,writeFileSync as Ze}from"fs";import{basename as T,dirname as f,extname as Ur,join as m}from"path";import ct from"better-sqlite3";import{execFileSync as lt}from"child_process";import{existsSync as gt,readdirSync as pt,readFileSync as dt}from"fs";import{extname as I,join as ae}from"path";function b(e){let t=new Set((e.extensions??ie).map(o=>o.toLowerCase()));if(t.size===0)return{scanned:0,inserted:0,existing:0};if(!gt(e.dbPath))throw new Error(`SCIP SQLite database not found at ${e.dbPath}`);let n=se(e.projectRoot),r=ft(e.projectRoot,t).filter(o=>!n.isIgnored(o)),i=new ct(e.dbPath);try{let o=ht(i,r),s=i.prepare(`INSERT OR IGNORE INTO documents (language, relative_path, position_encoding, text)
-       VALUES (?, ?, NULL, ?)`),u=i.transaction(g=>{let l=0;for(let p of g){if(o.has(p))continue;let h=dt(ae(e.projectRoot,p),"utf-8"),ut=s.run(yt(p),p,h);l+=Number(ut.changes)}return l})(r),c={scanned:r.length,inserted:u,existing:r.length-u};return e.onStatus?.(`Augmented SQLite documents with ${u} auxiliary source file${u===1?"":"s"} (${c.existing} already present).`),c}finally{i.close()}}function ft(e,t){let n=mt(e,t);if(n)return n;let r=[],i=o=>{let s=o?ae(e,o):e,a;try{a=pt(s,{withFileTypes:!0})}catch{return}for(let u of a){if(oe.has(u.name))continue;let c=o?`${o}/${u.name}`:u.name;if(u.isDirectory()){i(c);continue}t.has(I(u.name).toLowerCase())&&r.push(c)}};return i(""),r.sort()}function mt(e,t){try{return lt("git",["-C",e,"ls-files","-co","--exclude-standard","--","."],{encoding:"utf-8",maxBuffer:26214400,stdio:["ignore","pipe","ignore"]}).split(`
-`).filter(r=>r&&t.has(I(r).toLowerCase())).sort()}catch{return null}}function ht(e,t){let n=new Set,r=500;for(let i=0;i<t.length;i+=r){let o=t.slice(i,i+r),s=e.prepare(`SELECT relative_path FROM documents WHERE relative_path IN (${o.map(()=>"?").join(",")})`).all(...o);for(let a of s)n.add(a.relative_path)}return n}function yt(e){return I(e).toLowerCase()===".vue"?"vue":I(e).replace(/^\./,"").toLowerCase()||"source"}import{execFileSync as bt}from"child_process";import{existsSync as St,readdirSync as ce}from"fs";import{extname as le,join as ge}from"path";var xt=new Set([".git",".hg",".svn",".idea",".vscode","node_modules","vendor","dist","build","target","bin","obj",".dart_tool",".gradle",".next",".venv","venv","__pycache__"]),Rt=[{language:"typescript",files:["tsconfig.json","tsconfig.base.json"],extensions:[".ts",".tsx",".mts",".cts"]},{language:"rust",files:["Cargo.toml"],extensions:[".rs"]},{language:"go",files:["go.mod"],extensions:[".go"]},{language:"java",files:["pom.xml","build.gradle","build.gradle.kts"],extensions:[".java"]},{language:"kotlin",files:["build.gradle.kts"],extensions:[".kt",".kts"]},{language:"scala",files:["build.sbt"],extensions:[".scala"]},{language:"python",files:["pyproject.toml","setup.py","setup.cfg","Pipfile"],extensions:[".py",".pyi"]},{language:"ruby",files:["Gemfile"],extensions:[".rb"]},{language:"cpp",files:["compile_commands.json","CMakeLists.txt","Makefile"],extensions:[".cc",".cpp",".cxx",".hpp",".hh",".hxx"]},{language:"c",files:["compile_commands.json","CMakeLists.txt","Makefile"],extensions:[".c",".h"]},{language:"csharp",globs:["*.csproj","*.sln"],extensions:[".cs"]},{language:"vb",globs:["*.vbproj"],extensions:[".vb"]},{language:"dart",files:["pubspec.yaml"],extensions:[".dart"]},{language:"php",files:["composer.json"],extensions:[".php"]},{language:"javascript",files:["package.json"],extensions:[".js",".jsx",".mjs",".cjs"]}];function V(e){let t=[],n=vt(e),r=Lt(e);for(let i of Rt){if(kt(e,i.files)){t.push(i.language);continue}if(Pt(n,i.globs)){t.push(i.language);continue}wt(r,i.extensions)&&t.push(i.language)}return t.includes("typescript")&&ue(t,"javascript"),t.includes("cpp")&&!r.has(".c")&&ue(t,"c"),t}function vt(e){try{return ce(e)}catch{return[]}}function kt(e,t){return t?.length?t.some(n=>St(ge(e,n))):!1}function Pt(e,t){return t?.length?e.some(n=>t.some(r=>It(n,r))):!1}function It(e,t){if(t==="*")return!0;if(!t.includes("*"))return e===t;let[n,r]=t.split("*");return e.startsWith(n??"")&&e.endsWith(r??"")}function Lt(e){let t=jt(e);if(t)return t;let n=new Set,r=[e];for(;r.length>0;){let i=r.pop();if(!i)continue;let o;try{o=ce(i,{withFileTypes:!0})}catch{continue}for(let s of o){if(s.name.startsWith(".")&&!s.name.endsWith("proj")&&!s.name.endsWith("sln")&&s.isDirectory())continue;let a=ge(i,s.name);if(s.isDirectory()){xt.has(s.name)||r.push(a);continue}let u=le(s.name).toLowerCase();u&&n.add(u)}}return n}function jt(e){try{let t=bt("git",["-C",e,"ls-files","-co","--exclude-standard","--","."],{encoding:"utf-8",maxBuffer:26214400,stdio:["ignore","pipe","ignore"]}),n=new Set;for(let r of t.split(`
-`)){if(!r)continue;let i=le(r).toLowerCase();i&&n.add(i)}return n}catch{return null}}function wt(e,t){return t?.length?t.some(n=>e.has(n)):!1}function ue(e,t){let n=e.indexOf(t);n!==-1&&e.splice(n,1)}import{existsSync as pe,readdirSync as Ct}from"fs";import{join as N}from"path";var fe={typescript:{language:"typescript",indexerBinary:"scip-typescript",checkCommand:"npx scip-typescript --version",indexArgs:({outputPath:e,pnpmWorkspaces:t,indexerBinary:n,projectPath:r})=>{let i=r?["index","--output",e,"--no-progress-bar",r]:["index","--infer-tsconfig","--output",e,"--no-progress-bar"];return t&&!r&&i.splice(1,0,"--pnpm-workspaces"),{binary:n,args:i}},markerFiles:["tsconfig.json"],installMethods:[{label:"npm",prerequisite:"npm",binary:"npm",args:["install","-g","@sourcegraph/scip-typescript"]}],installUrl:"https://github.com/sourcegraph/scip-typescript",bundledNpmPackage:"@sourcegraph/scip-typescript"},javascript:{language:"javascript",indexerBinary:"scip-typescript",checkCommand:"npx 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Looked for: tsconfig.json, Cargo.toml, go.mod, pyproject.toml, etc.");r(`Detected languages: ${a.join(", ")}`);let u=Ri(t,a,{pnpmWorkspaces:e.pnpmWorkspaces,typescriptProjectMode:e.typescriptProjectMode,typescriptProjects:e.typescriptProjects,clojureConfigPath:e.clojureConfigPath}),c=await di(m(f(o.outputDb),"index.lock"),{projectRoot:t,trigger:e.trigger,onStatus:r}),g=null;try{let l=Zr({opts:e,paths:o,languages:a,fingerprint:u,start:s,onStatus:r});if(l)return l;si(i,r);let p=ei(o);return g=p.runDir,await ti({opts:e,languages:a,projectRoot:t,paths:o,tempPaths:p,fingerprint:u,start:s,maxHeapMb:n,skipAutoInstall:i,onStatus:r})}catch(l){throw pt(o.metaPath,ie({trigger:e.trigger,result:"failed",start:s,error:l instanceof Error?l.message:String(l)})),l}finally{g&&I(g,{recursive:!0,force:!0}),c()}}function Qr(e){let t=e.outputScip??m(e.projectRoot,"index.scip"),n=e.outputDb??m(e.projectRoot,"index.db");return{outputScip:t,outputDb:n,metaPath:m(f(n),"meta.json")}}function Zr(e){if(e.opts.skipIfUnchanged===!1||!M(e.paths.outputScip)||!M(e.paths.outputDb)||!Pi(e.paths.metaPath,e.fingerprint))return null;y(x(),{projectRoot:e.opts.projectRoot,dbPath:e.paths.outputDb,onStatus:e.onStatus});let t=Date.now()-e.start,n=ie({trigger:e.opts.trigger,result:"reused",start:e.start,languages:e.languages,skipped:[]});return pt(e.paths.metaPath,n),e.onStatus(`Index unchanged; reused existing SQLite index in ${(t/1e3).toFixed(1)}s`),{languages:e.languages,indexPath:e.paths.outputScip,dbPath:e.paths.outputDb,durationMs:t,reused:!0,skipped:[],lastRefresh:n}}function ei(e){let t=Kr(m(f(e.outputDb),"reindex-"));return{runDir:t,tempOutputScip:m(t,T(e.outputScip)),tempOutputDb:m(t,T(e.outputDb)),tempMetaPath:m(t,T(e.metaPath))}}async function ti(e){let t={...process.env,NODE_OPTIONS:`--max-old-space-size=${e.maxHeapMb}`},{indexedOutputs:n,skippedLanguages:r,reusedLanguages:i}=await ni(e,t);i.length>0&&e.onStatus(`Reused ${i.length} cached language shard(s): ${i.join(", ")}`);let o=ri(e,t,n,r),s=o.durationMs;return e.onStatus(`Done in ${(s/1e3).toFixed(1)}s`),{languages:n.map(a=>a.language),indexPath:e.paths.outputScip,dbPath:e.paths.outputDb,durationMs:s,reused:!1,skipped:r,lastRefresh:o}}async function ni(e,t){let n=ii(e),r=new Set(n.map(c=>c.language));for(let c of r)e.onStatus(`Reusing cached ${c} SCIP shard (language inputs unchanged).`);let{preparedRuns:i,skippedLanguages:o}=ai({languages:e.languages.filter(c=>!r.has(c)),tempOutputScip:e.tempPaths.tempOutputScip,projectRoot:e.projectRoot,env:t,skipAutoInstall:e.skipAutoInstall,pnpmWorkspaces:e.opts.pnpmWorkspaces,typescriptProjectMode:e.opts.typescriptProjectMode,typescriptProjects:e.opts.typescriptProjects,clojureConfigPath:e.opts.clojureConfigPath,onStatus:e.onStatus}),s=await Oe(i,e.projectRoot,e.onStatus,e.opts.indexerConcurrency),{indexedOutputs:a}=ci(s,o),u=[...n,...a];return li(u,o,e.languages,e.opts.allowPartial,e.onStatus),{indexedOutputs:u,skippedLanguages:o,reusedLanguages:[...r]}}function ri(e,t,n,r){oi(e.paths.outputDb,n),gi(n,e.tempPaths.tempOutputScip,e.onStatus),pi(e.tempPaths.tempOutputScip,e.tempPaths.tempOutputDb,t,e.onStatus),y(x(),{projectRoot:e.projectRoot,dbPath:e.tempPaths.tempOutputDb,onStatus:e.onStatus});let i=ie({trigger:e.opts.trigger,result:"rebuilt",start:e.start,languages:n.map(o=>o.language),skipped:[...r]});return gt(e.tempPaths.tempMetaPath,{version:3,status:r.length===0?"complete":"partial",updatedAt:new Date().toISOString(),fingerprint:e.fingerprint,languageFingerprints:st(e.projectRoot,e.languages,{pnpmWorkspaces:e.opts.pnpmWorkspaces,typescriptProjectMode:e.opts.typescriptProjectMode,typescriptProjects:e.opts.typescriptProjects,clojureConfigPath:e.opts.clojureConfigPath}),requestedLanguages:e.languages,indexedLanguages:n.map(o=>o.language),skipped:[...r],lastRefresh:i}),Si({tempOutputScip:e.tempPaths.tempOutputScip,tempOutputDb:e.tempPaths.tempOutputDb,tempMetaPath:e.tempPaths.tempMetaPath,outputScip:e.paths.outputScip,outputDb:e.paths.outputDb,metaPath:e.paths.metaPath}),i}function ii(e){let t;try{t=JSON.parse(D(e.paths.metaPath,"utf-8"))}catch{return[]}if(t.version!==3||!t.languageFingerprints)return[];let n=[],r=st(e.projectRoot,e.languages,{pnpmWorkspaces:e.opts.pnpmWorkspaces,typescriptProjectMode:e.opts.typescriptProjectMode,typescriptProjects:e.opts.typescriptProjects,clojureConfigPath:e.opts.clojureConfigPath});for(let i of e.languages){let o=lt(e.paths.outputDb,i);M(o)&&S(t.languageFingerprints[i])===S(r[i])&&n.push({language:i,scipPath:o})}return n}function oi(e,t){for(let n of t){let r=lt(e,n.language);ne(f(r),{recursive:!0}),n.scipPath!==r&&zr(n.scipPath,r)}}function si(e,t){if(!E()){if(e)throw new Error(`The scip CLI is required but not found on PATH.
+Install from: https://github.com/sourcegraph/scip/releases`);if(t("scip CLI not found on PATH. Attempting auto-install..."),!V(t))throw new Error(`The scip CLI is required but could not be installed.
+Install manually from: https://github.com/sourcegraph/scip/releases`)}}function ai(e){let t=[],n=[],r=e.languages.map((i,o)=>({language:i,scipPath:e.languages.length>1?ot(e.tempOutputScip,i,o):e.tempOutputScip}));for(let{language:i,scipPath:o}of r){let s=ui({...e,language:i,scipPath:o});for(let a of s)"skipped"in a?it(n,a.skipped):t.push(a.prepared)}return{preparedRuns:t,skippedLanguages:n}}function ui(e){if(e.language!=="typescript"||e.typescriptProjectMode!=="workspace")return[ee({...e,id:e.language,label:e.language,outputScipPath:e.scipPath})];let t=je(e.projectRoot,e.typescriptProjects);return t.length===0?[ee({...e,id:e.language,label:e.language,outputScipPath:e.scipPath})]:(e.onStatus(`Indexing TypeScript workspace as ${t.length} project shard(s).`),t.map((n,r)=>ee({...e,id:`typescript:${n}`,label:`typescript (${n})`,scipPath:ot(e.tempOutputScip,"typescript-project",r),outputScipPath:e.scipPath,pnpmWorkspaces:!1,projectPath:n})))}function ee(e){let t=C(e.language),n=F(t),r=H(t,e.projectRoot);if(!r&&!G(t)){if(e.skipAutoInstall){let a=`${n} not found on PATH (auto-install disabled). ${t.installUrl??""}`.trim();return e.onStatus(`Skipping ${e.language}: ${a}`),{skipped:{language:e.language,reason:a}}}if(e.onStatus(`${n} not found. Attempting auto-install...`),!K(t,e.onStatus)){let a=`${n} could not be auto-installed. ${t.installUrl?`Install manually from ${t.installUrl}`:`Install ${n} and put it on PATH.`}`;return e.onStatus(`Skipping ${e.language}: ${a}`),{skipped:{language:e.language,reason:a}}}}let i=r??v(t);if(!i){let a=`${n} was not found after installation checks.`;return e.onStatus(`Skipping ${e.language}: ${a}`),{skipped:{language:e.language,reason:a}}}let{binary:o,args:s}=t.indexArgs({projectRoot:e.projectRoot,outputPath:e.scipPath,pnpmWorkspaces:e.pnpmWorkspaces,indexerBinary:i,projectPath:e.projectPath,configPath:e.language==="clojure"?e.clojureConfigPath:void 0});return{prepared:{id:e.id,language:e.language,label:e.label,scipPath:e.scipPath,outputScipPath:e.outputScipPath,config:t,resolvedBinary:i,binary:o,args:s,env:z(t,e.env,i)}}}function ci(e,t){let n=new Map;for(let i of e)if(i.skipped)it(t,i.skipped);else{let o=`${i.language}\0${i.outputScipPath}`,s=n.get(o)??{language:i.language,outputScipPath:i.outputScipPath,scipPaths:[]};s.scipPaths.push(i.scipPath),n.set(o,s)}let r=[];for(let i of n.values())if(i.scipPaths.length>1)w(i.scipPaths,i.outputScipPath),r.push({language:i.language,scipPath:i.outputScipPath});else{let o=i.scipPaths[0];o!==i.outputScipPath&&k(o,i.outputScipPath),r.push({language:i.language,scipPath:i.outputScipPath})}return{indexedOutputs:r}}function it(e,t){let n=e.find(r=>r.language===t.language);if(!n){e.push(t);return}n.reason.includes(t.reason)||(n.reason=`${n.reason}; ${t.reason}`)}function li(e,t,n,r,i){if(e.length===0){let o=t.map(s=>`  - ${s.language}: ${s.reason}`).join(`
 `);throw new Error(`No language indexers ran successfully. Install at least one indexer for the languages in this project.
 `+o)}if(t.length!==0&&(i(`Indexed ${e.length} language output(s); skipped or incomplete: ${t.map(o=>o.language).join(", ")}.`),!r))throw new Error(`Failed to index all required languages; preserving the previous index. Pass --allow-partial to intentionally write an incomplete index.
 `+t.map(o=>`  - ${o.language}: ${o.reason}`).join(`
-`))}function ri(e,t,n){e.length>1?(n(`Merging ${e.length} language indexes...`),j(e.map(r=>r.scipPath),t)):e[0].scipPath!==t&&k(e[0].scipPath,t)}function ii(e,t,n,r){if(r("Converting to SQLite..."),!M(e))throw new Error(`SCIP index not found at ${e} after indexing`);try{let i=Re(e);i.removedDefinitionOccurrences>0&&r(`Sanitized ${i.removedDefinitionOccurrences} invalid definition occurrences across ${i.touchedDocuments} documents before SQLite conversion.`);let o=F();if(!o)throw new Error("scip CLI is not available");Ar(o,["expt-convert","--output",t,e],{env:n,stdio:"pipe",maxBuffer:50*1024*1024})}catch(i){let o=i instanceof Error?i.message:String(i);throw new Error(`Failed to convert SCIP index to SQLite: ${o}`,{cause:i})}}function tt(e,t,n){let r=Ur(e)||".scip",i=T(e,r);return m(f(e),`${i}.${n+1}.${t}${r}`)}async function oi(e,t){for(let n=0;n<2;n++){let r=si(e,t);if(r)return r;let i=ai(e);if(i&&ui(t.trigger,i)){t.onStatus(`Manual reindex preempting watcher refresh started at ${i.startedAt}.`),await li(i.pid),P(e,{force:!0});continue}if(i&&!ne(i.pid)){P(e,{force:!0});continue}throw new Error(`Another scip-query reindex is already running for ${f(e)}.`)}throw new Error(`Could not acquire scip-query reindex lock for ${f(e)}.`)}function si(e,t){let n;try{n=Wr(e,"wx")}catch(i){if((typeof i=="object"&&i&&"code"in i?i.code:void 0)==="EEXIST")return null;throw i}let r={version:1,pid:process.pid,projectRoot:t.projectRoot,startedAt:new Date().toISOString(),trigger:t.trigger};return Ze(n,JSON.stringify(r)+`
-`),()=>{try{$r(n)}finally{P(e,{force:!0})}}}function ai(e){try{let t=JSON.parse(D(e,"utf-8"));return typeof t.pid!="number"||!Number.isInteger(t.pid)||t.pid<=0?null:{version:1,pid:t.pid,projectRoot:typeof t.projectRoot=="string"?t.projectRoot:f(e),startedAt:typeof t.startedAt=="string"?t.startedAt:"unknown",trigger:t.trigger}}catch{return null}}function ui(e,t){return e?.kind==="manual-cli"&&ci(t?.trigger)}function ci(e){return e?.kind==="watch-source"||e?.kind==="watch-git-head"||e?.kind==="watch-git-index"||e?.kind==="watch-git-state"}async function li(e){Ye(e,"SIGTERM"),!await Qe(e,2e3)&&(Ye(e,"SIGKILL"),await Qe(e,1e3))}function Ye(e,t){try{process.kill(-e,t)}catch{try{process.kill(e,t)}catch{}}}async function Qe(e,t){let n=Date.now()+t;for(;Date.now()<n;){if(!ne(e))return!0;await gi(50)}return!ne(e)}function ne(e){try{return process.kill(e,0),!0}catch{return!1}}function gi(e){return new Promise(t=>setTimeout(t,e))}function pi(e){ee(e.tempOutputScip,e.outputScip),ee(e.tempOutputDb,e.outputDb),ee(e.tempMetaPath,e.metaPath)}function ee(e,t){P(`${t}.tmp-replace`,{force:!0}),k(e,`${t}.tmp-replace`),k(`${t}.tmp-replace`,t)}function di(e,t,n){return{version:2,languages:[...t].sort(),pnpmWorkspaces:it(n),typescriptProjectMode:n.typescriptProjectMode??"single",typescriptProjects:rt(n.typescriptProjects),files:R(e)}}function nt(e,t,n){return Object.fromEntries(t.map(r=>{let i=L(r).markerFiles,o=r==="typescript"?{typescriptProjectMode:n.typescriptProjectMode??"single",typescriptProjects:rt(n.typescriptProjects)}:{typescriptProjectMode:"single",typescriptProjects:[]};return[r,{version:2,languages:[r],pnpmWorkspaces:r==="typescript"&&it(n),...o,files:R(e,{language:r,markerFiles:i})}]}))}function rt(e){return[...new Set((e??[]).map(t=>t.trim()).filter(Boolean))].sort((t,n)=>t.localeCompare(n))}function it(e){return e.typescriptProjectMode!=="workspace"&&e.pnpmWorkspaces===!0}function ot(e,t){return m(f(e),"language-indexes",`${t}.scip`)}function fi(e,t){try{let n=JSON.parse(D(e,"utf-8"));return(n.version===2||n.version===3)&&n.status==="complete"&&S(n.fingerprint)===S(t)&&S([...n.indexedLanguages??[]].sort())===S(t.languages)}catch{return!1}}function st(e,t){let n=`${e}.tmp-${process.pid}-${Date.now()}`;Ze(n,`${JSON.stringify(t,null,2)}
-`),k(n,e)}function at(e,t){try{let n=JSON.parse(D(e,"utf-8"));if(n.version!==2&&n.version!==3)return;st(e,{...n,lastRefresh:t})}catch{}}function re(e){return{trigger:e.trigger??{kind:"unknown"},result:e.result,startedAt:new Date(e.start).toISOString(),completedAt:new Date().toISOString(),durationMs:Date.now()-e.start,indexedLanguages:e.languages?[...e.languages]:void 0,skipped:e.skipped?[...e.skipped]:void 0,error:e.error}}function S(e){return JSON.stringify(e)}export{fe as INDEXER_CONFIGS,b as augmentAuxiliaryDocuments,Pr as augmentVueResolvedReferences,O as describeIndexerBinary,V as detectLanguages,L as getIndexerConfig,z as getIndexerExecutionEnv,x as isBinaryAvailable,G as isIndexerInstalled,j as mergeScipFiles,me as mergeScipIndexes,No as reindex,v as resolveIndexerBinary,q as resolveProjectLocalIndexerBinary,H as tryInstallIndexer,E as tryInstallScipCli};
+`))}function gi(e,t,n){e.length>1?(n(`Merging ${e.length} language indexes...`),w(e.map(r=>r.scipPath),t)):e[0].scipPath!==t&&k(e[0].scipPath,t)}function pi(e,t,n,r){if(r("Converting to SQLite..."),!M(e))throw new Error(`SCIP index not found at ${e} after indexing`);try{let i=Ie(e);i.removedDefinitionOccurrences>0&&r(`Sanitized ${i.removedDefinitionOccurrences} invalid definition occurrences across ${i.touchedDocuments} documents before SQLite conversion.`);let o=E();if(!o)throw new Error("scip CLI is not available");Gr(o,["expt-convert","--output",t,e],{env:n,stdio:"pipe",maxBuffer:50*1024*1024})}catch(i){let o=i instanceof Error?i.message:String(i);throw new Error(`Failed to convert SCIP index to SQLite: ${o}`,{cause:i})}}function ot(e,t,n){let r=Yr(e)||".scip",i=T(e,r);return m(f(e),`${i}.${n+1}.${t}${r}`)}async function di(e,t){for(let n=0;n<2;n++){let r=fi(e,t);if(r)return r;let i=mi(e);if(i&&hi(t.trigger,i)){t.onStatus(`Manual reindex preempting watcher refresh started at ${i.startedAt}.`),await bi(i.pid),I(e,{force:!0});continue}if(i&&!re(i.pid)){I(e,{force:!0});continue}throw new Error(`Another scip-query reindex is already running for ${f(e)}.`)}throw new Error(`Could not acquire scip-query reindex lock for ${f(e)}.`)}function fi(e,t){let n;try{n=Xr(e,"wx")}catch(i){if((typeof i=="object"&&i&&"code"in i?i.code:void 0)==="EEXIST")return null;throw i}let r={version:1,pid:process.pid,projectRoot:t.projectRoot,startedAt:new Date().toISOString(),trigger:t.trigger};return rt(n,JSON.stringify(r)+`
+`),()=>{try{Hr(n)}finally{I(e,{force:!0})}}}function mi(e){try{let t=JSON.parse(D(e,"utf-8"));return typeof t.pid!="number"||!Number.isInteger(t.pid)||t.pid<=0?null:{version:1,pid:t.pid,projectRoot:typeof t.projectRoot=="string"?t.projectRoot:f(e),startedAt:typeof t.startedAt=="string"?t.startedAt:"unknown",trigger:t.trigger}}catch{return null}}function hi(e,t){return e?.kind==="manual-cli"&&yi(t?.trigger)}function yi(e){return e?.kind==="watch-source"||e?.kind==="watch-git-head"||e?.kind==="watch-git-index"||e?.kind==="watch-git-state"}async function bi(e){tt(e,"SIGTERM"),!await nt(e,2e3)&&(tt(e,"SIGKILL"),await nt(e,1e3))}function tt(e,t){try{process.kill(-e,t)}catch{try{process.kill(e,t)}catch{}}}async function nt(e,t){let n=Date.now()+t;for(;Date.now()<n;){if(!re(e))return!0;await xi(50)}return!re(e)}function re(e){try{return process.kill(e,0),!0}catch{return!1}}function xi(e){return new Promise(t=>setTimeout(t,e))}function Si(e){te(e.tempOutputScip,e.outputScip),te(e.tempOutputDb,e.outputDb),te(e.tempMetaPath,e.metaPath)}function te(e,t){I(`${t}.tmp-replace`,{force:!0}),k(e,`${t}.tmp-replace`),k(`${t}.tmp-replace`,t)}function Ri(e,t,n){return{version:2,languages:[...t].sort(),pnpmWorkspaces:ct(n),typescriptProjectMode:n.typescriptProjectMode??"single",typescriptProjects:at(n.typescriptProjects),clojureConfigPath:ut(n.clojureConfigPath),files:P(e)}}function st(e,t,n){return Object.fromEntries(t.map(r=>{let i=C(r).markerFiles,o=r==="typescript"?{typescriptProjectMode:n.typescriptProjectMode??"single",typescriptProjects:at(n.typescriptProjects)}:{typescriptProjectMode:"single",typescriptProjects:[]},s=r==="clojure"?ut(n.clojureConfigPath):void 0;return[r,{version:2,languages:[r],pnpmWorkspaces:r==="typescript"&&ct(n),...o,clojureConfigPath:s,files:P(e,{language:r,markerFiles:i})}]}))}function at(e){return[...new Set((e??[]).map(t=>t.trim()).filter(Boolean))].sort((t,n)=>t.localeCompare(n))}function ut(e){return e?.trim()||void 0}function ct(e){return e.typescriptProjectMode!=="workspace"&&e.pnpmWorkspaces===!0}function lt(e,t){return m(f(e),"language-indexes",`${t}.scip`)}function Pi(e,t){try{let n=JSON.parse(D(e,"utf-8"));return(n.version===2||n.version===3)&&n.status==="complete"&&S(n.fingerprint)===S(t)&&S([...n.indexedLanguages??[]].sort())===S(t.languages)}catch{return!1}}function gt(e,t){let n=`${e}.tmp-${process.pid}-${Date.now()}`;rt(n,`${JSON.stringify(t,null,2)}
+`),k(n,e)}function pt(e,t){try{let n=JSON.parse(D(e,"utf-8"));if(n.version!==2&&n.version!==3)return;gt(e,{...n,lastRefresh:t})}catch{}}function ie(e){return{trigger:e.trigger??{kind:"unknown"},result:e.result,startedAt:new Date(e.start).toISOString(),completedAt:new Date().toISOString(),durationMs:Date.now()-e.start,indexedLanguages:e.languages?[...e.languages]:void 0,skipped:e.skipped?[...e.skipped]:void 0,error:e.error}}function S(e){return JSON.stringify(e)}export{he as INDEXER_CONFIGS,ce as augmentAuxiliaryDocuments,Mr as augmentVueResolvedReferences,x as auxiliaryDocumentsAugmentationStage,F as describeIndexerBinary,A as detectLanguages,C as getIndexerConfig,z as getIndexerExecutionEnv,R as isBinaryAvailable,G as isIndexerInstalled,w as mergeScipFiles,ye as mergeScipIndexes,Ko as reindex,v as resolveIndexerBinary,H as resolveProjectLocalIndexerBinary,y as runPostIndexAugmentation,K as tryInstallIndexer,V as tryInstallScipCli,Ze as vueResolvedReferencesAugmentationStage};
 //# sourceMappingURL=reindex.js.map

package/dist/runtime.d.ts

@@ -1,6 +1,6 @@
-import { P as ProjectConfig, a as SupportedLanguage } from './config-types-BDIWAYzr.js';
-import { W as WatcherStatus } from './scip-cli-CnK9Va4O.js';
-export { g as getScipVersion, i as isScipInstalled, p as printScipInstallInstructions } from './scip-cli-CnK9Va4O.js';
+import { P as ProjectConfig, a as SupportedLanguage } from './config-types-dvHOz0zU.js';
+import { W as WatcherStatus } from './scip-cli-trnNvymv.js';
+export { g as getScipVersion, i as isScipInstalled, p as printScipInstallInstructions } from './scip-cli-trnNvymv.js';
 
 /**
  * Load project config from .scipquery.json in the project root.
@@ -48,6 +48,7 @@ declare class Watcher {
     private pnpmWorkspaces;
     private typescriptProjectMode?;
     private typescriptProjects?;
+    private clojureConfigPath?;
     private indexerConcurrency?;
     private onStatus;
     private onReindexComplete;

package/dist/runtime.js

@@ -1,3 +1,3 @@
-import{c as I,d as M,e as E}from"./chunk-ONPCQ2PM.js";import{a as C}from"./chunk-UUBMFL3F.js";import{readFileSync as $,writeFileSync as D,existsSync as R,mkdirSync as _}from"fs";import{isAbsolute as oe,join as c,relative as ae,resolve as P}from"path";import{createHash as A}from"crypto";import{homedir as N}from"os";var g=".scipquery.json",W={enabled:!1,debounceMs:3e4,cooldownMs:6e4,gitPollMs:2e3,autoRefresh:!0,ignore:[]};function m(i){let e=c(i,g);if(!R(e))return{};try{let t=$(e,"utf-8");return JSON.parse(t)}catch(t){let r=t instanceof Error?t.message:String(t);throw t instanceof SyntaxError?new Error(`invalid ${g} at ${e}: ${r}`,{cause:t}):new Error(`unable to read ${g} at ${e}: ${r}`,{cause:t})}}function j(i){return{...W,...i.watch}}function G(i,e){let t=process.env.SCIP_QUERY_CACHE_DIR;if(t)return f(t);if(e?.dbPath)return f(P(i,e.dbPath));let s=process.env.XDG_CACHE_HOME||c(N(),".cache"),n=A("sha256").update(P(i)).digest("hex").slice(0,12),a=c(s,"scip-query","projects",n);return f(a)}function y(i,e){let t=G(i,e);return{cacheDir:t,dbPath:c(t,"index.db"),indexPath:c(t,"index.scip"),metaPath:c(t,"meta.json")}}function F(i,e){let t=c(i,g);return R(t)||D(t,JSON.stringify({languages:e,watch:{enabled:!1,debounceMs:3e4,cooldownMs:6e4,gitPollMs:2e3,autoRefresh:!0}},null,2)+`
-`),t}function f(i){return _(i,{recursive:!0}),i}import{execFileSync as O,fork as L}from"child_process";import{statSync as U,watch as H}from"fs";import{join as q,relative as X}from"path";import B from"ignore";var x=class{projectRoot;config;watchConfig;languages;pnpmWorkspaces;typescriptProjectMode;typescriptProjects;indexerConcurrency;onStatus;onReindexComplete;onError;status={state:"idle"};debounceTimer=null;cooldownTimer=null;dirty=!1;changedFiles=0;pendingTrigger=null;reindexInFlight=!1;lastReindexEnd=0;fsWatchers=[];gitPollTimer=null;lastGitState=null;gitignoreFilter;extraIgnore;stopped=!1;constructor(e){this.projectRoot=e.projectRoot,this.config=e.config,this.watchConfig=j(e.config),this.languages=e.languages,this.pnpmWorkspaces=e.config.indexer?.typescript?.pnpmWorkspaces??!1,this.typescriptProjectMode=e.config.indexer?.typescript?.projectMode,this.typescriptProjects=e.config.indexer?.typescript?.projects,this.indexerConcurrency=e.config.indexerConcurrency,this.onStatus=e.onStatus??(()=>{}),this.onReindexComplete=e.onReindexComplete??(()=>{}),this.onError=e.onError??(t=>console.error(t.message)),this.gitignoreFilter=C(e.projectRoot),this.extraIgnore=B(),this.watchConfig.ignore.length>0&&this.extraIgnore.add(this.watchConfig.ignore)}start(){this.stopped=!1,this.setStatus({state:"idle"}),this.startGitStatePolling();try{let e=H(this.projectRoot,{recursive:!0},(t,r)=>{r&&!this.stopped&&this.handleFileChange(r)});this.fsWatchers.push(e)}catch{this.onError(new Error("Failed to start file watcher. On Linux, you may need to increase inotify limits: sysctl -w fs.inotify.max_user_watches=524288"))}}stop(){this.stopped=!0;for(let e of this.fsWatchers)e.close();this.fsWatchers=[],this.clearDebounceTimer(),this.clearCooldownTimer(),this.clearGitPollTimer(),this.setStatus({state:"idle"})}handleFileChange(e){let t=X(this.projectRoot,q(this.projectRoot,e));t===".git"||t.startsWith(".git/")||this.gitignoreFilter.isIgnored(t)||this.extraIgnore.ignores(t)||e.endsWith("index.db")||e.endsWith("index.scip")||e.endsWith("index.db.tmp")||this.scheduleReindex({kind:"watch-source",detail:t})}scheduleReindex(e){if(this.pendingTrigger=z(this.pendingTrigger,e),this.changedFiles++,this.reindexInFlight){this.dirty=!0,this.setStatus({state:"indexing",startedAt:this.status.startedAt});return}if(this.status.state==="cooldown"){this.dirty=!0,this.setStatus({state:"cooldown",until:this.status.until,dirty:!0});return}this.clearDebounceTimer();let t=Date.now()+this.watchConfig.debounceMs;this.setStatus({state:"waiting",changedFiles:this.changedFiles,reindexAt:t}),this.debounceTimer=setTimeout(()=>{this.debounceTimer=null,this.triggerReindex()},this.watchConfig.debounceMs)}triggerReindex(){if(this.reindexInFlight||this.stopped)return;let e=Date.now()-this.lastReindexEnd;if(this.lastReindexEnd>0&&e<this.watchConfig.cooldownMs){let s=this.watchConfig.cooldownMs-e;this.dirty=!0;let n=Date.now()+s;this.setStatus({state:"cooldown",until:n,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped&&(this.dirty=!1,this.triggerReindex())},s);return}this.reindexInFlight=!0,this.dirty=!1,this.changedFiles=0;let t=this.pendingTrigger??{kind:"watch-source"};this.pendingTrigger=null;let r=Date.now();this.setStatus({state:"indexing",startedAt:r}),this.runReindex(t).then(s=>{if(this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onReindexComplete(s),this.dirty&&!this.stopped){let n=Date.now()+this.watchConfig.cooldownMs;this.setStatus({state:"cooldown",until:n,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped?(this.dirty=!1,this.triggerReindex()):this.setStatus({state:"idle"})},this.watchConfig.cooldownMs)}else this.setStatus({state:"idle"})}).catch(s=>{this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onError(s instanceof Error?s:new Error(String(s))),this.setStatus({state:"idle"})})}runReindex(e){return new Promise((t,r)=>{let s=Date.now(),n=m(this.projectRoot),a=Object.keys(n).length>0?n:this.config,h=y(this.projectRoot,a),l=a.indexer?.typescript,o=L(new URL("./reindex-worker.js",import.meta.url).pathname,[],{detached:!0,env:{...process.env,SCIP_REINDEX_PROJECT_ROOT:this.projectRoot,SCIP_REINDEX_OUTPUT_SCIP:h.indexPath,SCIP_REINDEX_OUTPUT_DB:h.dbPath,SCIP_REINDEX_LANGUAGES:(a.languages??this.languages)?.join(",")??"",SCIP_REINDEX_INDEXER_CONCURRENCY:String(a.indexerConcurrency??this.indexerConcurrency??""),SCIP_REINDEX_PNPM_WORKSPACES:l?.pnpmWorkspaces??this.pnpmWorkspaces?"1":"",SCIP_REINDEX_TYPESCRIPT_CONFIG:JSON.stringify({projectMode:l?.projectMode??this.typescriptProjectMode,projects:l?.projects??this.typescriptProjects??[]}),SCIP_REINDEX_TRIGGER_KIND:e.kind,SCIP_REINDEX_TRIGGER_DETAIL:e.detail??""},stdio:"pipe"});o.on("exit",p=>{p===0?t(Date.now()-s):r(new Error(`Reindex worker exited with code ${p}`))}),o.on("error",r)})}setStatus(e){this.status=e,this.onStatus(e)}clearDebounceTimer(){this.debounceTimer&&(clearTimeout(this.debounceTimer),this.debounceTimer=null)}clearCooldownTimer(){this.cooldownTimer&&(clearTimeout(this.cooldownTimer),this.cooldownTimer=null)}startGitStatePolling(){this.lastGitState=this.readGitState(),this.lastGitState&&(this.gitPollTimer=setInterval(()=>this.pollGitState(),this.watchConfig.gitPollMs),this.gitPollTimer.unref?.())}pollGitState(){let e=this.lastGitState,t=this.readGitState();if(!e||!t||this.stopped){this.lastGitState=t;return}this.lastGitState=t;let r=e.head!==t.head,s=e.indexPath!==t.indexPath||e.indexMtimeMs!==t.indexMtimeMs||e.indexSize!==t.indexSize;r&&s?this.scheduleReindex({kind:"watch-git-state",detail:"HEAD and index changed"}):r?this.scheduleReindex({kind:"watch-git-head",detail:"HEAD changed"}):s&&this.scheduleReindex({kind:"watch-git-index",detail:t.indexPath??"index changed"})}readGitState(){let e=T(this.projectRoot,["rev-parse","--git-path","index"]);if(!e)return null;let t={head:T(this.projectRoot,["rev-parse","--verify","HEAD"]),indexPath:e};try{let r=U(e);t.indexMtimeMs=r.mtimeMs,t.indexSize=r.size}catch{t.indexMtimeMs=void 0,t.indexSize=void 0}return t}clearGitPollTimer(){this.gitPollTimer&&(clearInterval(this.gitPollTimer),this.gitPollTimer=null)}};function T(i,e){try{return O("git",["-C",i,...e],{encoding:"utf-8",stdio:["ignore","pipe","ignore"]}).trim()}catch{return}}function z(i,e){return i?i.kind===e.kind?i.detail===e.detail?i:{kind:i.kind,detail:"multiple changes"}:{kind:"watch-git-state",detail:`${i.kind}, ${e.kind}`}:e}import{existsSync as S,mkdirSync as J,symlinkSync as K,readlinkSync as V,unlinkSync as Y}from"fs";import{join as d,dirname as k,resolve as v}from"path";import{homedir as w,platform as Q}from"os";import{fileURLToPath as Z}from"url";var ee=Q()==="win32",te=["scip-query","scip-query-setup","scip-adoption","scip-health-audit","scip-health-improve","scip-hyper-optimization","scip-api-impact","concrete-plan","scip-ai-cleanup","scip-debug","scip-explore","scip-triage-issue","scip-diagram","scip-debloat","scip-doc-reconcile","scip-directory-architecture","scip-maintainability","scip-react-maintainability","scip-vue-maintainability","scip-verify","scip-language-playbook"];function ie(i={}){let e=i.quiet?()=>{}:console.log,t=Z(import.meta.url),r=v(k(t),"..","skills"),s=[d(w(),".claude","skills"),d(w(),".codex","skills"),d(w(),".agents","skills")],n={installed:[],skipped:[],alreadyLinked:[]};for(let a of s){let h=k(a);if(!S(h))continue;J(a,{recursive:!0});let l=re(a);for(let o of te){let p=d(r,o),u=d(a,o);if(!S(p)){n.skipped.push(`${l}/${o}`);continue}if(S(u)){try{let b=V(u);if(v(b)===v(p)){n.alreadyLinked.push(`${l}/${o}`),e(`  ok:   ${o} \u2192 ${l} (already linked)`);continue}}catch{n.skipped.push(`${l}/${o}`),e(`  skip: ${o} \u2192 ${l} (exists, not a symlink)`);continue}Y(u)}K(p,u,ee?"junction":"dir"),n.installed.push(`${l}/${o}`),e(`  done: ${o} \u2192 ${l}`)}}return n}function re(i){return i.includes(".codex")?"Codex":i.includes(".agents")?"Agents":"Claude"}export{x as Watcher,M as getScipVersion,F as initProjectConfig,ie as installSkills,I as isScipInstalled,m as loadProjectConfig,E as printScipInstallInstructions,y as resolveIndexPaths};
+import{c as k,d as E,e as M}from"./chunk-ONPCQ2PM.js";import{a as w}from"./chunk-UUBMFL3F.js";import{readFileSync as $,writeFileSync as D,existsSync as j,mkdirSync as _}from"fs";import{isAbsolute as oe,join as p,relative as ae,resolve as P}from"path";import{createHash as A}from"crypto";import{homedir as N}from"os";var g=".scipquery.json",W={enabled:!1,debounceMs:3e4,cooldownMs:6e4,gitPollMs:2e3,autoRefresh:!0,ignore:[]};function m(i){let e=p(i,g);if(!j(e))return{};try{let t=$(e,"utf-8");return JSON.parse(t)}catch(t){let r=t instanceof Error?t.message:String(t);throw t instanceof SyntaxError?new Error(`invalid ${g} at ${e}: ${r}`,{cause:t}):new Error(`unable to read ${g} at ${e}: ${r}`,{cause:t})}}function R(i){return{...W,...i.watch}}function G(i,e){let t=process.env.SCIP_QUERY_CACHE_DIR;if(t)return f(t);if(e?.dbPath)return f(P(i,e.dbPath));let s=process.env.XDG_CACHE_HOME||p(N(),".cache"),n=A("sha256").update(P(i)).digest("hex").slice(0,12),o=p(s,"scip-query","projects",n);return f(o)}function x(i,e){let t=G(i,e);return{cacheDir:t,dbPath:p(t,"index.db"),indexPath:p(t,"index.scip"),metaPath:p(t,"meta.json")}}function F(i,e){let t=p(i,g);return j(t)||D(t,JSON.stringify({languages:e,watch:{enabled:!1,debounceMs:3e4,cooldownMs:6e4,gitPollMs:2e3,autoRefresh:!0}},null,2)+`
+`),t}function f(i){return _(i,{recursive:!0}),i}import{execFileSync as O,fork as L}from"child_process";import{statSync as U,watch as H}from"fs";import{join as q,relative as X}from"path";import B from"ignore";var y=class{projectRoot;config;watchConfig;languages;pnpmWorkspaces;typescriptProjectMode;typescriptProjects;clojureConfigPath;indexerConcurrency;onStatus;onReindexComplete;onError;status={state:"idle"};debounceTimer=null;cooldownTimer=null;dirty=!1;changedFiles=0;pendingTrigger=null;reindexInFlight=!1;lastReindexEnd=0;fsWatchers=[];gitPollTimer=null;lastGitState=null;gitignoreFilter;extraIgnore;stopped=!1;constructor(e){this.projectRoot=e.projectRoot,this.config=e.config,this.watchConfig=R(e.config),this.languages=e.languages,this.pnpmWorkspaces=e.config.indexer?.typescript?.pnpmWorkspaces??!1,this.typescriptProjectMode=e.config.indexer?.typescript?.projectMode,this.typescriptProjects=e.config.indexer?.typescript?.projects,this.clojureConfigPath=e.config.indexer?.clojure?.configPath,this.indexerConcurrency=e.config.indexerConcurrency,this.onStatus=e.onStatus??(()=>{}),this.onReindexComplete=e.onReindexComplete??(()=>{}),this.onError=e.onError??(t=>console.error(t.message)),this.gitignoreFilter=w(e.projectRoot),this.extraIgnore=B(),this.watchConfig.ignore.length>0&&this.extraIgnore.add(this.watchConfig.ignore)}start(){this.stopped=!1,this.setStatus({state:"idle"}),this.startGitStatePolling();try{let e=H(this.projectRoot,{recursive:!0},(t,r)=>{r&&!this.stopped&&this.handleFileChange(r)});this.fsWatchers.push(e)}catch{this.onError(new Error("Failed to start file watcher. On Linux, you may need to increase inotify limits: sysctl -w fs.inotify.max_user_watches=524288"))}}stop(){this.stopped=!0;for(let e of this.fsWatchers)e.close();this.fsWatchers=[],this.clearDebounceTimer(),this.clearCooldownTimer(),this.clearGitPollTimer(),this.setStatus({state:"idle"})}handleFileChange(e){let t=X(this.projectRoot,q(this.projectRoot,e));t===".git"||t.startsWith(".git/")||this.gitignoreFilter.isIgnored(t)||this.extraIgnore.ignores(t)||e.endsWith("index.db")||e.endsWith("index.scip")||e.endsWith("index.db.tmp")||this.scheduleReindex({kind:"watch-source",detail:t})}scheduleReindex(e){if(this.pendingTrigger=z(this.pendingTrigger,e),this.changedFiles++,this.reindexInFlight){this.dirty=!0,this.setStatus({state:"indexing",startedAt:this.status.startedAt});return}if(this.status.state==="cooldown"){this.dirty=!0,this.setStatus({state:"cooldown",until:this.status.until,dirty:!0});return}this.clearDebounceTimer();let t=Date.now()+this.watchConfig.debounceMs;this.setStatus({state:"waiting",changedFiles:this.changedFiles,reindexAt:t}),this.debounceTimer=setTimeout(()=>{this.debounceTimer=null,this.triggerReindex()},this.watchConfig.debounceMs)}triggerReindex(){if(this.reindexInFlight||this.stopped)return;let e=Date.now()-this.lastReindexEnd;if(this.lastReindexEnd>0&&e<this.watchConfig.cooldownMs){let s=this.watchConfig.cooldownMs-e;this.dirty=!0;let n=Date.now()+s;this.setStatus({state:"cooldown",until:n,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped&&(this.dirty=!1,this.triggerReindex())},s);return}this.reindexInFlight=!0,this.dirty=!1,this.changedFiles=0;let t=this.pendingTrigger??{kind:"watch-source"};this.pendingTrigger=null;let r=Date.now();this.setStatus({state:"indexing",startedAt:r}),this.runReindex(t).then(s=>{if(this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onReindexComplete(s),this.dirty&&!this.stopped){let n=Date.now()+this.watchConfig.cooldownMs;this.setStatus({state:"cooldown",until:n,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped?(this.dirty=!1,this.triggerReindex()):this.setStatus({state:"idle"})},this.watchConfig.cooldownMs)}else this.setStatus({state:"idle"})}).catch(s=>{this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onError(s instanceof Error?s:new Error(String(s))),this.setStatus({state:"idle"})})}runReindex(e){return new Promise((t,r)=>{let s=Date.now(),n=m(this.projectRoot),o=Object.keys(n).length>0?n:this.config,u=x(this.projectRoot,o),a=o.indexer?.typescript,l=o.indexer?.clojure,d=L(new URL("./reindex-worker.js",import.meta.url).pathname,[],{detached:!0,env:{...process.env,SCIP_REINDEX_PROJECT_ROOT:this.projectRoot,SCIP_REINDEX_OUTPUT_SCIP:u.indexPath,SCIP_REINDEX_OUTPUT_DB:u.dbPath,SCIP_REINDEX_LANGUAGES:(o.languages??this.languages)?.join(",")??"",SCIP_REINDEX_INDEXER_CONCURRENCY:String(o.indexerConcurrency??this.indexerConcurrency??""),SCIP_REINDEX_PNPM_WORKSPACES:a?.pnpmWorkspaces??this.pnpmWorkspaces?"1":"",SCIP_REINDEX_TYPESCRIPT_CONFIG:JSON.stringify({projectMode:a?.projectMode??this.typescriptProjectMode,projects:a?.projects??this.typescriptProjects??[]}),SCIP_REINDEX_CLOJURE_CONFIG_PATH:l?.configPath??this.clojureConfigPath??"",SCIP_REINDEX_TRIGGER_KIND:e.kind,SCIP_REINDEX_TRIGGER_DETAIL:e.detail??""},stdio:"pipe"});d.on("exit",c=>{c===0?t(Date.now()-s):r(new Error(`Reindex worker exited with code ${c}`))}),d.on("error",r)})}setStatus(e){this.status=e,this.onStatus(e)}clearDebounceTimer(){this.debounceTimer&&(clearTimeout(this.debounceTimer),this.debounceTimer=null)}clearCooldownTimer(){this.cooldownTimer&&(clearTimeout(this.cooldownTimer),this.cooldownTimer=null)}startGitStatePolling(){this.lastGitState=this.readGitState(),this.lastGitState&&(this.gitPollTimer=setInterval(()=>this.pollGitState(),this.watchConfig.gitPollMs),this.gitPollTimer.unref?.())}pollGitState(){let e=this.lastGitState,t=this.readGitState();if(!e||!t||this.stopped){this.lastGitState=t;return}this.lastGitState=t;let r=e.head!==t.head,s=e.indexPath!==t.indexPath||e.indexMtimeMs!==t.indexMtimeMs||e.indexSize!==t.indexSize;r&&s?this.scheduleReindex({kind:"watch-git-state",detail:"HEAD and index changed"}):r?this.scheduleReindex({kind:"watch-git-head",detail:"HEAD changed"}):s&&this.scheduleReindex({kind:"watch-git-index",detail:t.indexPath??"index changed"})}readGitState(){let e=I(this.projectRoot,["rev-parse","--git-path","index"]);if(!e)return null;let t={head:I(this.projectRoot,["rev-parse","--verify","HEAD"]),indexPath:e};try{let r=U(e);t.indexMtimeMs=r.mtimeMs,t.indexSize=r.size}catch{t.indexMtimeMs=void 0,t.indexSize=void 0}return t}clearGitPollTimer(){this.gitPollTimer&&(clearInterval(this.gitPollTimer),this.gitPollTimer=null)}};function I(i,e){try{return O("git",["-C",i,...e],{encoding:"utf-8",stdio:["ignore","pipe","ignore"]}).trim()}catch{return}}function z(i,e){return i?i.kind===e.kind?i.detail===e.detail?i:{kind:i.kind,detail:"multiple changes"}:{kind:"watch-git-state",detail:`${i.kind}, ${e.kind}`}:e}import{existsSync as S,mkdirSync as J,symlinkSync as K,readlinkSync as V,unlinkSync as Y}from"fs";import{join as h,dirname as T,resolve as v}from"path";import{homedir as C,platform as Q}from"os";import{fileURLToPath as Z}from"url";var ee=Q()==="win32",te=["scip-query","scip-query-setup","scip-adoption","scip-health-audit","scip-health-improve","scip-hyper-optimization","scip-api-impact","concrete-plan","scip-ai-cleanup","scip-debug","scip-explore","scip-triage-issue","scip-diagram","scip-debloat","scip-doc-reconcile","scip-directory-architecture","scip-maintainability","scip-react-maintainability","scip-vue-maintainability","scip-verify","scip-language-playbook"];function ie(i={}){let e=i.quiet?()=>{}:console.log,t=Z(import.meta.url),r=v(T(t),"..","skills"),s=[h(C(),".claude","skills"),h(C(),".codex","skills"),h(C(),".agents","skills")],n={installed:[],skipped:[],alreadyLinked:[]};for(let o of s){let u=T(o);if(!S(u))continue;J(o,{recursive:!0});let a=re(o);for(let l of te){let d=h(r,l),c=h(o,l);if(!S(d)){n.skipped.push(`${a}/${l}`);continue}if(S(c)){try{let b=V(c);if(v(b)===v(d)){n.alreadyLinked.push(`${a}/${l}`),e(`  ok:   ${l} \u2192 ${a} (already linked)`);continue}}catch{n.skipped.push(`${a}/${l}`),e(`  skip: ${l} \u2192 ${a} (exists, not a symlink)`);continue}Y(c)}K(d,c,ee?"junction":"dir"),n.installed.push(`${a}/${l}`),e(`  done: ${l} \u2192 ${a}`)}}return n}function re(i){return i.includes(".codex")?"Codex":i.includes(".agents")?"Agents":"Claude"}export{y as Watcher,E as getScipVersion,F as initProjectConfig,ie as installSkills,k as isScipInstalled,m as loadProjectConfig,M as printScipInstallInstructions,x as resolveIndexPaths};
 //# sourceMappingURL=runtime.js.map

package/dist/{scip-cli-CnK9Va4O.d.ts → scip-cli-trnNvymv.d.ts}

@@ -1,4 +1,4 @@
-import { a as SupportedLanguage } from './config-types-BDIWAYzr.js';
+import { a as SupportedLanguage } from './config-types-dvHOz0zU.js';
 
 type WatcherStatus = {
     state: 'idle';

package/docs/COMMAND_REFERENCE.md

@@ -107,7 +107,7 @@ This syntax summary is generated from the CLI command descriptors. Keep workflow
 
 | Command | Description | Options |
 |---|---|---|
-| `self-audit` | Score the cheap evidence paths against the TypeScript compiler oracle on sampled symbols | `--samples <n>`<br>`-s, --scope <path>`<br>`--json` |
+| `self-audit` | Score cheap evidence paths against the best available semantic/source oracle on sampled symbols | `--samples <n>`<br>`-s, --scope <path>`<br>`--json` |
 | `health` | Composite codebase health report with prioritized action list | `-s, --scope <path>`<br>`--full`<br>`--json`<br>`--baseline`<br>`--write-baseline` |
 | `complexity <symbol>` | Per-symbol complexity: branches, cyclomatic estimate, fan-in/out, callees | `--full`<br>`--json` |
 
@@ -115,7 +115,7 @@ This syntax summary is generated from the CLI command descriptors. Keep workflow
 
 | Command | Description | Options |
 |---|---|---|
-| `bench` | Benchmark indexing and command runtimes for this repository | `--json`<br>`--cold-index`<br>`--include-heavy`<br>`--command <cmd>`<br>`--timeout-ms <n>` |
+| `bench` | Benchmark indexing and command runtimes for this repository | `--json`<br>`--cold-index`<br>`--include-heavy`<br>`--command <cmd>`<br>`--timeout-ms <n>`<br>`--progress`<br>`--profile`<br>`--profile-out <path>` |
 | `install-skills` | Install skills (scip-query, scip-query-setup, scip-adoption, scip-health-audit, scip-health-improve, scip-hyper-optimization, scip-api-impact, concrete-plan, scip-ai-cleanup, scip-debug, scip-explore, scip-triage-issue, scip-diagram, scip-debloat, scip-doc-reconcile, scip-directory-architecture, scip-maintainability, scip-react-maintainability, scip-vue-maintainability, scip-verify, scip-language-playbook) into Claude Code, Codex, and shared agent roots | - |
 | `setup-hooks` | Install or refresh project-local Codex and Claude Code lifecycle hooks | `--json` |
 | `check-deps` | Check whether scip-query and the detected language indexers are actually runnable | - |

package/docs/analyzer-inventory.md

@@ -193,3 +193,11 @@ The `src/queries/impact/diff-gate.ts` citation remains accurate after the
 focused co-change history optimization. Diff-gate still owns the check list and
 co-change partner gate; the latest change only narrows the git-history read for
 that gate to commits in the bounded analysis window that touched changed files.
+
+## 2026-06-30 Git Evidence Product Follow-Up
+
+The `src/queries/health/health.ts` and `src/queries/impact/diff-gate.ts`
+citations remain accurate after the Git evidence product migration. Health
+still owns the composite phase inventory, and diff-gate still owns
+`DIFF_GATE_CHECKS`; both now obtain Git history facts through
+`gitEvidenceProduct()` instead of direct helper reads.

package/docs/analyzer-validation-ledger.md

@@ -299,3 +299,10 @@ optimization. Default diff-gate still runs the same check family; the
 co-change partner check now reads only changed-file commits from the same
 bounded git-history window instead of parsing the whole name-only history
 payload.
+
+## 2026-06-30 Git Evidence Product Follow-Up
+
+The `diffGate()` and health citations remain accurate after the Git evidence
+product migration. Default diff-gate still runs the same check family, and
+health still reports the same Git evidence summary; both paths now read Git
+history through `gitEvidenceProduct()`.