scip-query 0.10.1 → 0.10.3

package/skills/scip-directory-architecture/SKILL.md

@@ -0,0 +1,178 @@
+---
+name: scip-directory-architecture
+description: Review and improve repository directory architecture with scip-query evidence. Use when the user asks to design, evaluate, reorganize, or migrate source folder structure; identify feature/module ownership boundaries; turn a messy or AI-generated codebase into clearer folders; decide whether locality boundaries are mature enough for config; or plan safe directory migrations without guessing from filenames alone.
+---
+
+# SCIP Directory Architecture
+
+## Overview
+
+Use this skill to turn source layout questions into an evidence-backed architecture review. Do not treat the current folder tree as authoritative, and do not invent an "optimal" structure without proving the ownership concepts from code, tests, docs, and dependency evidence.
+
+A directory architecture is the filesystem arrangement of source files by their main reason to change. Its defining trait is that a maintainer can predict where a concept belongs before reading every import.
+
+An ownership boundary is a folder, package, module, or convention that groups code around one stable responsibility. Its defining trait is that code inside the boundary should usually change for the same kind of reason.
+
+A target structure is a proposed future folder layout for the repo or scope. Its defining trait is that it expresses the desired ownership model, not merely a prettier tree.
+
+A migration slice is the smallest set of file moves and import updates that can be verified independently. Its defining trait is that it reduces one structural ambiguity without requiring the whole architecture to move at once.
+
+## Non-Negotiables
+
+1. Start with evidence, not taste. Refresh the index when stale, then ground claims in `scip-query` outputs plus project docs and tests.
+2. Separate review from migration. A directory architecture review may propose moves; it does not move files unless the user asked for implementation or approved a specific migration slice.
+3. Preserve working conventions. Existing boundaries are not wrong just because they are broad; central folders such as `errors`, `routes`, `workflows`, `schemas`, `contracts`, or `features` may be doing real work.
+4. Do not reward generic `shared`. A shared folder is justified only when the shared concept has a name, owner, and consumers across real boundaries.
+5. Treat messy repos honestly. If ownership concepts are not stable, produce a discovery map and decision list instead of pretending the repo has a clean target structure.
+6. Prefer small verified moves. Broad reorganizations need staged migration slices with import updates, tests, `scip-query reindex`, and `scip-query diff-gate`.
+
+## Workflow
+
+### 1. Bound the Question
+
+Identify whether the user wants:
+
+- a review of the existing structure;
+- a proposed target structure;
+- a locality config decision;
+- a migration plan;
+- or an actual file-moving implementation.
+
+If the user asks for "the best folder structure," translate that into: "What ownership model is supported by this repo's code, tests, product domains, and change history?"
+
+### 2. Refresh and Inventory
+
+Run:
+
+```bash
+scip-query status
+scip-query reindex
+scip-query stats
+find . -maxdepth 3 -type d | sort
+```
+
+Read durable project guidance before judging structure:
+
+```bash
+rg -n "architecture|structure|feature|module|boundary|shared|workflow|route|contract|domain|ownership" AGENTS.md README.md docs agent-os .codex -g '!node_modules'
+```
+
+Use `rg --files` to sample real files in each important folder. Ignore generated, build, coverage, vendored, and dependency directories unless they are part of the architecture question.
+
+### 3. Build the Evidence Map
+
+Use these probes as evidence, not as verdicts:
+
+```bash
+scip-query system <scope>
+scip-query files <pattern>
+scip-query surface <scope>
+scip-query deps <file>
+scip-query rdeps <file>
+scip-query change-surface <file>
+scip-query plan-context <file-or-symbol>
+scip-query locality-candidates --json --full
+scip-query cycles
+scip-query co-change
+scip-query similar-files --min-similarity 0.6 --min-deps 3
+scip-query similar-chains --min-similarity 0.5
+scip-query recent-duplicates
+scip-query drift
+```
+
+For each folder under review, record:
+
+- real-world concept or product area represented by the folder;
+- public exports, entry points, routes, commands, or package surfaces;
+- main consumers and cross-boundary consumers;
+- tests that define the folder's behavior;
+- co-change partners and repeated edit patterns;
+- duplicated or parallel folder patterns;
+- docs or standards that claim ownership rules.
+
+### 4. Classify Boundary Maturity
+
+Classify each candidate folder:
+
+- Mature: repeated, documented, and enforced by imports, tests, routes, packages, standards, or review history.
+- Emerging: meaningful and partly repeated, but not yet consistent enough to configure or enforce.
+- Accidental: a convenience bucket, legacy pile, generated artifact, recent edit cluster, or mixed folder with unrelated reasons to change.
+
+A slop codebase is a codebase whose files are arranged by accident, convenience, or recent edits rather than stable ownership rules. Its defining trait is that directory names do not reliably predict where code should live. For this case, stop at discovery and decision prompts unless the user explicitly asks for a first migration slice.
+
+### 5. Propose the Target Structure
+
+Produce an architecture proposal with this shape:
+
+````markdown
+# Directory Architecture Review
+
+## Scope
+## Current Structure Map
+## Boundary Maturity
+
+| Boundary | Evidence | Maturity | Judgment |
+| --- | --- | --- | --- |
+
+## Target Structure
+
+```text
+src/
+  ...
+```
+
+## Move Ledger
+
+| Slice | Current files | Proposed home | Why | Verification |
+| --- | --- | --- | --- | --- |
+
+## Locality Config
+## Deferred Decisions
+## Migration Order
+````
+
+The target structure should name ownership concepts, not just folder labels. Prefer existing names when they already carry meaning. Introduce a new folder only when it removes ambiguity for multiple files or consumers.
+
+### 6. Decide What Not to Move
+
+Explicitly list no-move decisions when:
+
+- a broad consumer set proves a central boundary is useful;
+- a folder is route-facing, package-facing, or contract-facing;
+- consumers cross boundaries because the concept is infrastructure;
+- moving would hide a domain-specific concept under generic `shared`;
+- the evidence is too weak and needs a human ownership decision.
+
+### 7. Implement Only a Migration Slice
+
+When the user asks to proceed, pick the smallest high-confidence slice. Before editing, state:
+
+- files to move;
+- imports/exports/tests/docs to update;
+- expected verification commands;
+- rollback risk.
+
+Then move files with normal filesystem tools, update imports with project tooling where available, and run:
+
+```bash
+scip-query reindex
+scip-query incomplete-migration
+scip-query recent-duplicates
+scip-query co-change <moved-file-or-config>
+scip-query diff-gate
+```
+
+Also run the repo's normal tests or typecheck for the affected workspace. If the migration adds or changes `.scipquery.json` locality settings, run:
+
+```bash
+scip-query config-validate
+scip-query locality-candidates --json --full
+```
+
+## Output Rules
+
+- Lead with findings and judgments, not command transcripts.
+- Every proposed boundary needs evidence from at least two independent signals or a clear note that it is only a candidate.
+- Every proposed move needs a verification path.
+- For messy repos, output "discovery mode" and decision questions instead of a fake complete architecture.
+- For implementation, never batch unrelated folder moves just because they fit the same target structure.

package/skills/scip-maintainability/SKILL.md

@@ -249,7 +249,7 @@ Then run the post-change checks that match what the fix actually did:
 | --- | --- |
 | Extracted a helper, hook, composable, component logic, or named abstraction | `scip-query incomplete-migration`; migrate every unchanged site that still contains the extracted logic or document essential variation |
 | Added a new helper, module, component, hook, or composable | `scip-query similar <new-symbol>` when symbol-like, plus `scip-query recent-duplicates --full`; delete echoes of established code |
-| Consolidated duplicated files, command handlers, adapters, or workflows | rerun the detector that motivated the change: `similar-files`, `similar-chains`, `wrapper-candidates`, `passthrough-candidates`, frontend duplicate commands, or `health --full` |
+| Consolidated duplicated files, command handlers, adapters, or workflows | rerun the detector that motivated the change: `similar-files`, `similar-chains`, `wrapper-candidates`, `passthrough-candidates`, frontend duplicate commands, or `health` |
 | Added parameters, options, config flags, props, or broad option objects | `scip-query unused-params`; remove speculative inputs that no body uses |
 | Added a wrapper, adapter, facade, re-export, or forwarding layer | `scip-query wrapper-candidates`, `scip-query passthrough-candidates`, and `scip-query redundant-reexports` when exports changed |
 | Added an interface, base class, type alias, or abstraction boundary | `scip-query stale-abstractions --include-low-confidence`; prove the abstraction has real consumers and policy |

package/skills/scip-query/SKILL.md

@@ -37,7 +37,8 @@ When the user asks you to build, change, or fix something non-trivial:
 | Find dead code, duplication, or structural bloat | `scip-debloat` | `scip-query health` |
 | Clean up after AI-assisted coding sessions | `scip-ai-cleanup` | `scip-query recent-duplicates`, `scip-query incomplete-migration` |
 | Reconcile docs/standards that drifted from the code | `scip-doc-reconcile` | `scip-query doc-drift <doc>` |
-| Review architecture, boundaries, hidden policies | `scip-maintainability` | `scip-query bottlenecks`, `scip-query coupling` |
+| Review or redesign source folder structure and ownership boundaries | `scip-directory-architecture` | `scip-query locality-candidates --json --full`, `scip-query similar-files --full` |
+| Review architecture, hidden policies, weak boundaries beyond folder structure | `scip-maintainability` | `scip-query bottlenecks`, `scip-query coupling` |
 | Review React frontend reuse, components, hooks, or TSX/JSX maintainability | `scip-react-maintainability` | `scip-query react-component-duplicates --full`, `scip-query react-hook-candidates --full` |
 | Review Vue frontend reuse, SFCs, templates, or composables | `scip-vue-maintainability` | `scip-query vue-component-duplicates --full`, `scip-query vue-composable-candidates --full` |
 

package/skills/scip-query-setup/SKILL.md

@@ -0,0 +1,118 @@
+---
+name: scip-query-setup
+description: Set up or refresh scip-query in a repository so agents can use compiler-resolved code intelligence effectively. Use when adopting scip-query in a repo, fixing stale setup, adding AGENTS.md guidance, checking capability coverage, configuring .scipquery.json, or calibrating locality architectural boundaries.
+allowed-tools: [Bash, Read, Edit, Write, Glob, Skill]
+---
+
+# scip-query Setup
+
+Use this skill when a repository needs to become a reliable scip-query workspace, not merely a repo where the binary happens to run.
+
+A scip-query workspace is a source repository with a current SCIP index, project config, and agent guidance that make code references compiler-resolved instead of guessed from text search. Its defining trait is that agents can answer "where is this defined, who uses it, and what changes with it?" from the index before editing.
+
+A setup pass is the bounded workflow that installs or verifies the tool, creates the project index, writes agent instructions, and records repo-specific calibration. Its defining trait is that it turns one-off local success into a repeatable operating surface for future agents.
+
+## Setup Workflow
+
+1. Confirm the project root.
+
+```bash
+pwd
+git rev-parse --show-toplevel
+```
+
+2. Verify the command is available.
+
+```bash
+scip-query --version
+scip-query status --json
+```
+
+If the command is missing, install or link it using the repo's package manager, then rerun this step.
+
+3. Create or refresh the index.
+
+```bash
+scip-query reindex
+scip-query stats
+```
+
+If indexing fails, run `scip-query status --json` and fix the reported missing indexer, language, or config problem before continuing.
+
+4. Seed durable agent guidance.
+
+```bash
+scip-query setup-agent
+```
+
+Use `scip-query setup-agent --git-hook` only when the user wants the repository to enforce `diff-gate` before commits.
+
+5. Check capability coverage.
+
+```bash
+scip-query capability-matrix
+scip-query health
+```
+
+Record unsupported or partial capabilities in the setup notes. Do not describe an analyzer as "clean" when the capability matrix says its evidence is unavailable for the language.
+
+6. Calibrate project config.
+
+Open or create `.scipquery.json`. Keep config minimal and tied to observed repo facts.
+
+```json
+{
+  "languages": ["typescript"],
+  "locality": {
+    "architecturalBoundarySegments": ["effect", "errors", "policies", "workflows"]
+  }
+}
+```
+
+An architectural boundary segment is a folder name that marks a code ownership boundary, such as `effect`, `errors`, `policies`, `routes`, `schemas`, or `workflows`. Its defining trait is that broad use of code inside that folder can mean the boundary is central and intentional, so `locality-candidates` should not invent a generic `shared` destination for it.
+
+Before writing `locality.architecturalBoundarySegments`, classify boundary maturity:
+
+- Mature boundary: folder names recur as intentional ownership units in code, tests, docs, route/workflow conventions, or agent standards. Add only the repo-specific segment names not already built in.
+- Emerging boundary: folder names look meaningful, but ownership is inconsistent or only visible in one area. Do not configure yet; record candidates and rerun after a few reviewed locality results prove the boundary.
+- No reliable boundary: the repo is mostly flat, mixed, generated, or ad hoc. Leave locality config absent or empty. Do not invent architecture; use `locality-candidates` as a discovery report and ask for human ownership decisions.
+
+Treat boundary maturity as an evidence question. A segment needs at least two independent signals before it belongs in config: directory structure plus a project standard, repeated import convention, test organization, package boundary, route family, workflow family, or reviewed locality false positive. If the same folder name means different things in different parts of the repo, do not add it globally.
+
+For an unstructured repo, setup runs in discovery mode. Discovery mode means the tool records candidate ownership clusters and uncertain folders, but does not write `locality.architecturalBoundarySegments`. The setup note should say which paths need a human architecture decision and should keep `locality-candidates` recommendations as suggestions to inspect, not moves to trust.
+
+Use `locality.architecturalBoundarySegments` only when validation finds a repo-specific mature boundary that is not already in the built-in list. Add folder names, not paths.
+
+7. Validate directory-organization signals when setup touches locality.
+
+```bash
+scip-query locality-candidates --json --full
+```
+
+Review rows with non-null `suggestedHome`. Keep exact destinations only when the path already exists, stays inside the source root, and matches the repo's ownership model. When a generic `shared` destination is wrong because the current folder is a real boundary, add that folder name to `.scipquery.json` and rerun.
+
+Validate both suppression and emission. Suppression means a bad generic home was withheld because the source already lives in a real boundary. Emission means a useful `suggestedHome` is still shown for code that genuinely lacks a home. A config that suppresses every row is acceptable only when manual review confirms there were no useful destinations to emit.
+
+If the repo has no mature boundaries, the correct setup result is a note, not a config guess: "locality boundaries not configured; repo needs architecture ownership decisions first." A slop codebase is a codebase whose files are arranged by accident, convenience, or recent edits rather than by stable ownership rules. Its defining trait is that directory names do not reliably predict where code should live, so the setup skill must not make `locality-candidates` appear more certain than the repo itself.
+
+8. Finish with the standard gate.
+
+```bash
+scip-query reindex
+scip-query diff-gate
+```
+
+Fix findings or state the explicit acceptance reason.
+
+## Handoff Notes
+
+When setup changes are complete, record:
+
+- repository path and revision;
+- index command and result;
+- capability matrix limitations;
+- `.scipquery.json` changes and why each setting exists;
+- validation commands and raw-output locations;
+- final `diff-gate` result.
+
+Do not add broad analyzer config in advance. Each setting should be justified by a reviewed false positive, false negative, capability gap, or repo convention.

package/skills/scip-react-maintainability/SKILL.md

@@ -31,7 +31,7 @@ scip-query react-component-duplicates --scope <react-source-scope> --full --json
 scip-query react-hook-candidates --scope <react-source-scope> --full --json
 scip-query react-large-component-pressure --scope <react-source-scope> --full --json
 scip-query recent-duplicates --scope <react-source-scope> --full --json
-scip-query health --scope <react-source-scope> --full --json
+scip-query health --scope <react-source-scope> --json
 ```
 
 ## Workflow

package/skills/scip-vue-maintainability/SKILL.md

@@ -38,7 +38,7 @@ Run the Vue review commands uncapped when doing a serious frontend pass. Do not
 scip-query vue-component-duplicates --scope <vue-source-scope> --full --json
 scip-query vue-composable-candidates --scope <vue-source-scope> --full --json
 scip-query vue-large-view-pressure --scope <vue-source-scope> --full --json
-scip-query health --full --json
+scip-query health --json
 ```
 
 ## Workflow

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package/dist/chunk-2XKAMW6B.js

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package/dist/chunk-332L7SRO.js

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package/dist/chunk-5ALI77D7.js

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package/dist/chunk-5IDEQEM4.js

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