scientify 2.1.0 → 3.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (186) hide show
  1. package/README.en.md +21 -1
  2. package/README.md +27 -0
  3. package/dist/index.d.ts.map +1 -1
  4. package/dist/index.js +2 -77
  5. package/dist/index.js.map +1 -1
  6. package/dist/src/cli/research.d.ts.map +1 -1
  7. package/dist/src/cli/research.js +47 -23
  8. package/dist/src/cli/research.js.map +1 -1
  9. package/dist/src/commands/metabolism-status.d.ts.map +1 -1
  10. package/dist/src/commands/metabolism-status.js +5 -25
  11. package/dist/src/commands/metabolism-status.js.map +1 -1
  12. package/dist/src/commands.d.ts +8 -8
  13. package/dist/src/commands.d.ts.map +1 -1
  14. package/dist/src/commands.js +230 -243
  15. package/dist/src/commands.js.map +1 -1
  16. package/dist/src/release-gate.d.ts +14 -0
  17. package/dist/src/release-gate.d.ts.map +1 -0
  18. package/dist/src/release-gate.js +124 -0
  19. package/dist/src/release-gate.js.map +1 -0
  20. package/dist/src/templates/bootstrap.d.ts.map +1 -1
  21. package/dist/src/templates/bootstrap.js +157 -94
  22. package/dist/src/templates/bootstrap.js.map +1 -1
  23. package/dist/src/types.d.ts +2 -10
  24. package/dist/src/types.d.ts.map +1 -1
  25. package/openclaw.plugin.json +11 -17
  26. package/package.json +2 -3
  27. package/skills/algorithm-selection/SKILL.md +103 -0
  28. package/skills/algorithm-selection/references/candidate-template.md +13 -0
  29. package/skills/algorithm-selection/references/selection-template.md +39 -0
  30. package/skills/artifact-review/SKILL.md +146 -0
  31. package/skills/artifact-review/references/release-gate-template.md +40 -0
  32. package/skills/artifact-review/references/review-checklist.md +45 -0
  33. package/skills/artifact-review/references/style-review-checklist.md +30 -0
  34. package/skills/baseline-runner/SKILL.md +103 -0
  35. package/skills/baseline-runner/references/baseline-matrix-template.md +9 -0
  36. package/skills/baseline-runner/references/baseline-report-template.md +25 -0
  37. package/skills/dataset-validate/SKILL.md +104 -0
  38. package/skills/dataset-validate/references/data-validation-template.md +38 -0
  39. package/skills/figure-standardize/SKILL.md +110 -0
  40. package/skills/figure-standardize/references/caption-template.md +12 -0
  41. package/skills/figure-standardize/references/figure-placement-template.md +30 -0
  42. package/skills/figure-standardize/references/figure-style-guide.md +36 -0
  43. package/skills/idea-generation/SKILL.md +20 -44
  44. package/skills/idea-generation/references/code-mapping.md +3 -3
  45. package/skills/idea-generation/references/idea-template.md +1 -1
  46. package/skills/idea-generation/references/reading-long-papers.md +3 -3
  47. package/skills/metabolism/SKILL.md +80 -36
  48. package/skills/paper-download/SKILL.md +61 -0
  49. package/skills/release-layout/SKILL.md +73 -0
  50. package/skills/release-layout/references/page-structure.md +14 -0
  51. package/skills/research-collect/SKILL.md +41 -111
  52. package/skills/research-experiment/SKILL.md +20 -12
  53. package/skills/research-implement/SKILL.md +10 -11
  54. package/skills/research-pipeline/SKILL.md +23 -31
  55. package/skills/research-plan/SKILL.md +7 -11
  56. package/skills/research-review/SKILL.md +21 -22
  57. package/skills/research-survey/SKILL.md +28 -25
  58. package/skills/write-paper/SKILL.md +252 -0
  59. package/skills/write-paper/references/boundary-notes-template.md +34 -0
  60. package/skills/write-paper/references/claim-inventory-template.md +32 -0
  61. package/skills/write-paper/references/evidence-contract.md +57 -0
  62. package/skills/write-paper/references/figure-callout-template.md +38 -0
  63. package/skills/write-paper/references/figures-manifest-template.md +44 -0
  64. package/skills/write-paper/references/latex/README.md +22 -0
  65. package/skills/write-paper/references/latex/build_paper.sh +41 -0
  66. package/skills/write-paper/references/latex/manuscript.tex +39 -0
  67. package/skills/write-paper/references/latex/references.bib +10 -0
  68. package/skills/write-paper/references/latex/sections/ablations.tex +3 -0
  69. package/skills/write-paper/references/latex/sections/abstract.tex +3 -0
  70. package/skills/write-paper/references/latex/sections/conclusion.tex +3 -0
  71. package/skills/write-paper/references/latex/sections/discussion_scope.tex +7 -0
  72. package/skills/write-paper/references/latex/sections/experimental_protocol.tex +3 -0
  73. package/skills/write-paper/references/latex/sections/introduction.tex +3 -0
  74. package/skills/write-paper/references/latex/sections/main_results.tex +9 -0
  75. package/skills/write-paper/references/latex/sections/method_system.tex +3 -0
  76. package/skills/write-paper/references/latex/sections/problem_setup.tex +3 -0
  77. package/skills/write-paper/references/latex/sections/related_work.tex +3 -0
  78. package/skills/write-paper/references/paper-template.md +155 -0
  79. package/skills/write-paper/references/paragraph-contract.md +139 -0
  80. package/skills/write-paper/references/paragraph-examples.md +171 -0
  81. package/skills/write-paper/references/style-banlist.md +81 -0
  82. package/skills/write-review-paper/SKILL.md +22 -16
  83. package/skills/write-review-paper/references/note-template.md +1 -1
  84. package/skills/write-review-paper/references/survey-template.md +1 -1
  85. package/dist/src/hooks/research-mode.d.ts +0 -22
  86. package/dist/src/hooks/research-mode.d.ts.map +0 -1
  87. package/dist/src/hooks/research-mode.js +0 -35
  88. package/dist/src/hooks/research-mode.js.map +0 -1
  89. package/dist/src/hooks/scientify-cron-autofill.d.ts +0 -15
  90. package/dist/src/hooks/scientify-cron-autofill.d.ts.map +0 -1
  91. package/dist/src/hooks/scientify-cron-autofill.js +0 -156
  92. package/dist/src/hooks/scientify-cron-autofill.js.map +0 -1
  93. package/dist/src/hooks/scientify-signature.d.ts +0 -21
  94. package/dist/src/hooks/scientify-signature.d.ts.map +0 -1
  95. package/dist/src/hooks/scientify-signature.js +0 -150
  96. package/dist/src/hooks/scientify-signature.js.map +0 -1
  97. package/dist/src/knowledge-state/project.d.ts +0 -13
  98. package/dist/src/knowledge-state/project.d.ts.map +0 -1
  99. package/dist/src/knowledge-state/project.js +0 -88
  100. package/dist/src/knowledge-state/project.js.map +0 -1
  101. package/dist/src/knowledge-state/render.d.ts +0 -63
  102. package/dist/src/knowledge-state/render.d.ts.map +0 -1
  103. package/dist/src/knowledge-state/render.js +0 -368
  104. package/dist/src/knowledge-state/render.js.map +0 -1
  105. package/dist/src/knowledge-state/store.d.ts +0 -19
  106. package/dist/src/knowledge-state/store.d.ts.map +0 -1
  107. package/dist/src/knowledge-state/store.js +0 -978
  108. package/dist/src/knowledge-state/store.js.map +0 -1
  109. package/dist/src/knowledge-state/types.d.ts +0 -182
  110. package/dist/src/knowledge-state/types.d.ts.map +0 -1
  111. package/dist/src/knowledge-state/types.js +0 -2
  112. package/dist/src/knowledge-state/types.js.map +0 -1
  113. package/dist/src/literature/subscription-state.d.ts +0 -112
  114. package/dist/src/literature/subscription-state.d.ts.map +0 -1
  115. package/dist/src/literature/subscription-state.js +0 -696
  116. package/dist/src/literature/subscription-state.js.map +0 -1
  117. package/dist/src/research-subscriptions/constants.d.ts +0 -16
  118. package/dist/src/research-subscriptions/constants.d.ts.map +0 -1
  119. package/dist/src/research-subscriptions/constants.js +0 -59
  120. package/dist/src/research-subscriptions/constants.js.map +0 -1
  121. package/dist/src/research-subscriptions/cron-client.d.ts +0 -8
  122. package/dist/src/research-subscriptions/cron-client.d.ts.map +0 -1
  123. package/dist/src/research-subscriptions/cron-client.js +0 -81
  124. package/dist/src/research-subscriptions/cron-client.js.map +0 -1
  125. package/dist/src/research-subscriptions/delivery.d.ts +0 -10
  126. package/dist/src/research-subscriptions/delivery.d.ts.map +0 -1
  127. package/dist/src/research-subscriptions/delivery.js +0 -82
  128. package/dist/src/research-subscriptions/delivery.js.map +0 -1
  129. package/dist/src/research-subscriptions/handlers.d.ts +0 -6
  130. package/dist/src/research-subscriptions/handlers.d.ts.map +0 -1
  131. package/dist/src/research-subscriptions/handlers.js +0 -204
  132. package/dist/src/research-subscriptions/handlers.js.map +0 -1
  133. package/dist/src/research-subscriptions/parse.d.ts +0 -11
  134. package/dist/src/research-subscriptions/parse.d.ts.map +0 -1
  135. package/dist/src/research-subscriptions/parse.js +0 -492
  136. package/dist/src/research-subscriptions/parse.js.map +0 -1
  137. package/dist/src/research-subscriptions/prompt.d.ts +0 -5
  138. package/dist/src/research-subscriptions/prompt.d.ts.map +0 -1
  139. package/dist/src/research-subscriptions/prompt.js +0 -347
  140. package/dist/src/research-subscriptions/prompt.js.map +0 -1
  141. package/dist/src/research-subscriptions/types.d.ts +0 -66
  142. package/dist/src/research-subscriptions/types.d.ts.map +0 -1
  143. package/dist/src/research-subscriptions/types.js +0 -2
  144. package/dist/src/research-subscriptions/types.js.map +0 -1
  145. package/dist/src/research-subscriptions.d.ts +0 -2
  146. package/dist/src/research-subscriptions.d.ts.map +0 -1
  147. package/dist/src/research-subscriptions.js +0 -2
  148. package/dist/src/research-subscriptions.js.map +0 -1
  149. package/dist/src/services/auto-updater.d.ts +0 -15
  150. package/dist/src/services/auto-updater.d.ts.map +0 -1
  151. package/dist/src/services/auto-updater.js +0 -188
  152. package/dist/src/services/auto-updater.js.map +0 -1
  153. package/dist/src/tools/arxiv-download.d.ts +0 -24
  154. package/dist/src/tools/arxiv-download.d.ts.map +0 -1
  155. package/dist/src/tools/arxiv-download.js +0 -177
  156. package/dist/src/tools/arxiv-download.js.map +0 -1
  157. package/dist/src/tools/github-search-tool.d.ts +0 -25
  158. package/dist/src/tools/github-search-tool.d.ts.map +0 -1
  159. package/dist/src/tools/github-search-tool.js +0 -114
  160. package/dist/src/tools/github-search-tool.js.map +0 -1
  161. package/dist/src/tools/openreview-lookup.d.ts +0 -31
  162. package/dist/src/tools/openreview-lookup.d.ts.map +0 -1
  163. package/dist/src/tools/openreview-lookup.js +0 -414
  164. package/dist/src/tools/openreview-lookup.js.map +0 -1
  165. package/dist/src/tools/paper-browser.d.ts +0 -23
  166. package/dist/src/tools/paper-browser.d.ts.map +0 -1
  167. package/dist/src/tools/paper-browser.js +0 -121
  168. package/dist/src/tools/paper-browser.js.map +0 -1
  169. package/dist/src/tools/scientify-cron.d.ts +0 -63
  170. package/dist/src/tools/scientify-cron.d.ts.map +0 -1
  171. package/dist/src/tools/scientify-cron.js +0 -265
  172. package/dist/src/tools/scientify-cron.js.map +0 -1
  173. package/dist/src/tools/scientify-literature-state.d.ts +0 -303
  174. package/dist/src/tools/scientify-literature-state.d.ts.map +0 -1
  175. package/dist/src/tools/scientify-literature-state.js +0 -957
  176. package/dist/src/tools/scientify-literature-state.js.map +0 -1
  177. package/dist/src/tools/unpaywall-download.d.ts +0 -21
  178. package/dist/src/tools/unpaywall-download.d.ts.map +0 -1
  179. package/dist/src/tools/unpaywall-download.js +0 -169
  180. package/dist/src/tools/unpaywall-download.js.map +0 -1
  181. package/dist/src/tools/workspace.d.ts +0 -32
  182. package/dist/src/tools/workspace.d.ts.map +0 -1
  183. package/dist/src/tools/workspace.js +0 -69
  184. package/dist/src/tools/workspace.js.map +0 -1
  185. package/skills/metabolism-init/SKILL.md +0 -80
  186. package/skills/research-subscription/SKILL.md +0 -119
package/dist/src/tools/scientify-literature-state.d.ts DELETED
@@ -1,303 +0,0 @@
1
- export declare const ScientifyLiteratureStateToolSchema: import("@sinclair/typebox").TObject<{
2
- action: import("@sinclair/typebox").TString;
3
- scope: import("@sinclair/typebox").TString;
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- topic: import("@sinclair/typebox").TString;
5
- project_id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
6
- preferences: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
7
- max_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
8
- recency_days: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
9
- sources: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
10
- }>>;
11
- papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
12
- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
13
- title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
14
- url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
15
- score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
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- reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- }>>>;
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- status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
19
- run_id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- note: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
21
- signal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
22
- paper: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
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- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
24
- title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- }>>;
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- source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
28
- tags: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
29
- knowledge_state: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
30
- core_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
32
- title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- published_at: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
37
- reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- summary: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
39
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
40
- full_text_read: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
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- read_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- full_text_source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- full_text_ref: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
44
- unread_reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
45
- key_evidence_spans: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
46
- domain: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
47
- subdomains: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
48
- cross_domain_links: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
49
- research_goal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
50
- approach: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
51
- methodology_design: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
52
- key_contributions: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
53
- practical_insights: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
54
- must_understand_points: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
55
- limitations: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
56
- evidence_anchors: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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- section: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- locator: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- claim: import("@sinclair/typebox").TString;
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- quote: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
61
- }>>>;
62
- }>>>;
63
- exploration_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
64
- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- published_at: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
70
- reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- summary: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
73
- full_text_read: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
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- read_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- full_text_source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- full_text_ref: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- unread_reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- key_evidence_spans: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
79
- domain: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- subdomains: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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- cross_domain_links: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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- research_goal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- approach: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
84
- methodology_design: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
85
- key_contributions: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
86
- practical_insights: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
87
- must_understand_points: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
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- limitations: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
89
- evidence_anchors: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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- section: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- locator: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- claim: import("@sinclair/typebox").TString;
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- quote: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
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- }>>>;
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- }>>>;
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- exploration_trace: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
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- query: import("@sinclair/typebox").TString;
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- reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
99
- source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
100
- candidates: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
101
- filtered_to: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
102
- filtered_out_reasons: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
103
- result_count: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
104
- }>>>;
105
- knowledge_changes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
106
- type: import("@sinclair/typebox").TString;
107
- statement: import("@sinclair/typebox").TString;
108
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
109
- topic: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
110
- }>>>;
111
- knowledge_updates: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
112
- topic: import("@sinclair/typebox").TString;
113
- op: import("@sinclair/typebox").TString;
114
- content: import("@sinclair/typebox").TString;
115
- confidence: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
116
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
117
- }>>>;
118
- hypotheses: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
119
- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
120
- statement: import("@sinclair/typebox").TString;
121
- trigger: import("@sinclair/typebox").TString;
122
- dependency_path: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
123
- novelty: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
124
- feasibility: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
125
- impact: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
126
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
127
- validation_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
128
- validation_notes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
129
- validation_evidence: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
130
- }>>>;
131
- run_log: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
132
- model: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
133
- duration_ms: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
134
- error: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
135
- degraded: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
136
- notes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
137
- temp_full_text_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
138
- temp_files_downloaded: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
139
- temp_cleanup_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
140
- temp_cleanup_note: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
141
- full_text_attempted: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
142
- full_text_completed: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
143
- }>>;
144
- }>>;
145
- }>;
146
- export declare function createScientifyLiteratureStateTool(): {
147
- label: string;
148
- name: string;
149
- description: string;
150
- parameters: import("@sinclair/typebox").TObject<{
151
- action: import("@sinclair/typebox").TString;
152
- scope: import("@sinclair/typebox").TString;
153
- topic: import("@sinclair/typebox").TString;
154
- project_id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
155
- preferences: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
156
- max_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
157
- recency_days: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
158
- sources: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
159
- }>>;
160
- papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
161
- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
162
- title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
163
- url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
164
- score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
165
- reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
166
- }>>>;
167
- status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
168
- run_id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
169
- note: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
170
- signal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
171
- paper: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
172
- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
173
- title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
174
- url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
175
- }>>;
176
- source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
177
- tags: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
178
- knowledge_state: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
179
- core_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
180
- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
181
- title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
182
- url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
183
- source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
184
- published_at: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
185
- score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
186
- reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
187
- summary: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
188
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
189
- full_text_read: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
190
- read_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
191
- full_text_source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
192
- full_text_ref: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
193
- unread_reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
194
- key_evidence_spans: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
195
- domain: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
196
- subdomains: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
197
- cross_domain_links: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
198
- research_goal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
199
- approach: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
200
- methodology_design: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
201
- key_contributions: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
202
- practical_insights: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
203
- must_understand_points: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
204
- limitations: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
205
- evidence_anchors: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
206
- section: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
207
- locator: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
208
- claim: import("@sinclair/typebox").TString;
209
- quote: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
210
- }>>>;
211
- }>>>;
212
- exploration_papers: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
213
- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
214
- title: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
215
- url: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
216
- source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
217
- published_at: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
218
- score: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
219
- reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
220
- summary: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
221
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
222
- full_text_read: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
223
- read_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
224
- full_text_source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
225
- full_text_ref: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
226
- unread_reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
227
- key_evidence_spans: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
228
- domain: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
229
- subdomains: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
230
- cross_domain_links: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
231
- research_goal: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
232
- approach: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
233
- methodology_design: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
234
- key_contributions: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
235
- practical_insights: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
236
- must_understand_points: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
237
- limitations: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
238
- evidence_anchors: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
239
- section: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
240
- locator: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
241
- claim: import("@sinclair/typebox").TString;
242
- quote: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
243
- }>>>;
244
- }>>>;
245
- exploration_trace: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
246
- query: import("@sinclair/typebox").TString;
247
- reason: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
248
- source: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
249
- candidates: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
250
- filtered_to: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
251
- filtered_out_reasons: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
252
- result_count: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
253
- }>>>;
254
- knowledge_changes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
255
- type: import("@sinclair/typebox").TString;
256
- statement: import("@sinclair/typebox").TString;
257
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
258
- topic: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
259
- }>>>;
260
- knowledge_updates: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
261
- topic: import("@sinclair/typebox").TString;
262
- op: import("@sinclair/typebox").TString;
263
- content: import("@sinclair/typebox").TString;
264
- confidence: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
265
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
266
- }>>>;
267
- hypotheses: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
268
- id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
269
- statement: import("@sinclair/typebox").TString;
270
- trigger: import("@sinclair/typebox").TString;
271
- dependency_path: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
272
- novelty: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
273
- feasibility: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
274
- impact: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
275
- evidence_ids: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
276
- validation_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
277
- validation_notes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
278
- validation_evidence: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>>;
279
- }>>>;
280
- run_log: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TObject<{
281
- model: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
282
- duration_ms: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
283
- error: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
284
- degraded: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
285
- notes: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
286
- temp_full_text_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
287
- temp_files_downloaded: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
288
- temp_cleanup_status: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
289
- temp_cleanup_note: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
290
- full_text_attempted: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
291
- full_text_completed: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
292
- }>>;
293
- }>>;
294
- }>;
295
- execute: (_toolCallId: string, rawArgs: unknown) => Promise<{
296
- content: {
297
- type: "text";
298
- text: string;
299
- }[];
300
- details: unknown;
301
- }>;
302
- };
303
- //# sourceMappingURL=scientify-literature-state.d.ts.map
package/dist/src/tools/scientify-literature-state.d.ts.map DELETED
@@ -1 +0,0 @@
1
- {"version":3,"file":"scientify-literature-state.d.ts","sourceRoot":"","sources":["../../../src/tools/scientify-literature-state.ts"],"names":[],"mappings":"AAkLA,eAAO,MAAM,kCAAkC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA8D7C,CAAC;AAqpBH,wBAAgB,kCAAkC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;2BAOjB,MAAM,WAAW,OAAO;;;;;;;EA2PxD"}