scientify 2.0.0 → 3.0.0

package/skills/research-survey/SKILL.md

@@ -14,29 +14,22 @@ metadata:
 
 **Don't ask permission. Just do it.**
 
-**Workspace:** `$W` = working directory provided in task parameter.
-
 ## Prerequisites
 
 Read and verify these files exist before starting:
 
 | File | Source |
 |------|--------|
-| `$W/papers/_meta/*.json` | /research-collect |
-| `$W/papers/_downloads/` or `$W/papers/{direction}/` | /research-collect |
-| `$W/repos/` | /research-collect Phase 3 |
-| `$W/prepare_res.md` | /research-collect Phase 3 |
+| `papers/` | /research-collect 或 /metabolism |
 
 **If papers are missing, STOP:** "需要先运行 /research-collect 完成论文下载"
 
-**Note:** 如果 `prepare_res.md` 中注明"无可用参考仓库"，代码映射步骤可跳过，但需在 survey_res.md 中标注。
-
 ## Output
 
 | File | Content |
 |------|---------|
-| `$W/notes/paper_{arxiv_id}.md` | Per-paper structured notes |
-| `$W/survey_res.md` | Synthesis report |
+| `knowledge/paper_{id}.md` | Per-paper structured notes |
+| `survey_res.md` | Synthesis report |
 
 ---
 
@@ -45,30 +38,23 @@ Read and verify these files exist before starting:
 ### Step 1: 收集论文列表
 
 ```bash
-ls $W/papers/_meta/
+ls papers/
 ```
 
-读取所有 `.json` 元数据，构建论文列表。按 score 降序排列。
+列出所有论文目录（arXiv 源文件）和 PDF 文件。
 
 ### Step 2: 逐篇深度分析
 
-**对每篇论文**（优先高分论文）：
+**对每篇论文：**
 
 #### 2.1 读 .tex 源码
 
-找到论文的 .tex 文件（在 `_downloads/{arxiv_id}/` 或 `{direction}/{arxiv_id}/` 下），重点读取：
+找到论文的 .tex 文件（在 `papers/{arxiv_id}/` 下），重点读取：
 - **Method / Approach** section
 - **Model Architecture** section
 - 数学公式定义
 
-**对于大型论文**（>2000 行），使用 `paper_browser` 分页阅读：
-```javascript
-// 先读前 100 行找到 section 位置
-paper_browser({ file_path: "$W/papers/{arxiv_id}/{file}.tex", start_line: 1, num_lines: 100 })
-
-// 找到 Method section 后，跳转到该位置
-paper_browser({ file_path: "$W/papers/{arxiv_id}/{file}.tex", start_line: 450, num_lines: 150 })
-```
+**对于大型论文**（>2000 行），分段读取关键 section，避免上下文溢出。
 
 如果没有 .tex（只有 PDF），基于 abstract 分析。
 
@@ -83,14 +69,14 @@ paper_browser({ file_path: "$W/papers/{arxiv_id}/{file}.tex", start_line: 450, n
 
 **⚠️ 强制性步骤（当 repos/ 存在时）** — 代码映射是下游 plan 和 implement 的关键输入。
 
-读取 `$W/prepare_res.md` 中的仓库列表，对每个公式/核心概念：
+读取 `prepare_res.md` 中的仓库列表，对每个公式/核心概念：
 1. 在对应仓库中搜索实现代码（用 grep 关键类名/函数名）
 2. 记录**文件路径、行号、代码片段**
 3. 如果多个仓库有不同实现，记录差异
 
 #### 2.4 写入笔记
 
-写入 `$W/notes/paper_{arxiv_id}.md`：
+写入 `knowledge/paper_{id}.md`：
 
 ```markdown
 # {Paper Title}
@@ -120,7 +106,7 @@ $$
 
 ### Step 3: 综合报告
 
-读取所有 `notes/paper_*.md`，写入 `$W/survey_res.md`：
+读取所有 `knowledge/paper_*.md`，写入 `survey_res.md`：
 
 ```markdown
 # Survey Synthesis

package/skills/write-review-paper/SKILL.md

@@ -16,18 +16,18 @@ metadata:
 
 Guide for writing a structured literature review or survey paper from papers you've already collected. This skill helps with reading strategy, note organization, and academic writing.
 
-**Workspace:** `$W` = working directory provided in task parameter. Outputs go to `$W/review/`.
+Outputs go to `review/`.
 
 ## Prerequisites
 
 Before starting, ensure you have:
-1. Papers collected in `$W/papers/`
-2. Ideally, clustering done by `/research-collect` in `$W/survey/clusters.json`
+1. Papers collected in `papers/`
+2. Ideally, knowledge base built in `knowledge/`
 
 Check workspace:
 ```bash
-ls $W/papers/
-ls $W/survey/ 2>/dev/null
+ls papers/
+ls knowledge/ 2>/dev/null
 ```
 
 ---
@@ -44,7 +44,7 @@ Based on clusters from survey, prioritize reading:
 | P2 (重要) | 主要方法论、重要实验结果 | 读摘要+方法+实验 |
 | P3 (参考) | 辅助材料、边缘相关 | 仅读摘要 |
 
-Create `$W/review/reading_plan.md`:
+Create `review/reading_plan.md`:
 
 ```markdown
 # Reading Plan
@@ -62,7 +62,7 @@ Create `$W/review/reading_plan.md`:
 
 ### 1.2 Reading Notes Template
 
-For each paper, create `$W/review/notes/{paper_id}.md` using template in `references/note-template.md`.
+For each paper, create `review/notes/{paper_id}.md` using template in `references/note-template.md`.
 
 ---
 
@@ -70,7 +70,7 @@ For each paper, create `$W/review/notes/{paper_id}.md` using template in `refere
 
 ### 2.1 Build Comparison Table
 
-Create `$W/review/comparison.md`:
+Create `review/comparison.md`:
 
 ```markdown
 # Method Comparison
@@ -83,7 +83,7 @@ Create `$W/review/comparison.md`:
 
 ### 2.2 Timeline Analysis
 
-Create `$W/review/timeline.md`:
+Create `review/timeline.md`:
 
 ```markdown
 # Research Timeline
@@ -106,7 +106,7 @@ Create `$W/review/timeline.md`:
 
 ### 2.3 Taxonomy Design
 
-Create `$W/review/taxonomy.md`:
+Create `review/taxonomy.md`:
 
 ```markdown
 # Taxonomy of Approaches
@@ -140,7 +140,7 @@ Create `$W/review/taxonomy.md`:
 
 ### 3.1 Survey Paper Template
 
-Create `$W/review/draft.md` using template in `references/survey-template.md`.
+Create `review/draft.md` using template in `references/survey-template.md`.
 
 Key sections: Abstract → Introduction → Background → Taxonomy → Comparison → Datasets → Future Directions → Conclusion
 
@@ -198,7 +198,7 @@ For a thesis chapter:
 ## Output Files
 
 ```
-$W/review/
+review/
 ├── reading_plan.md       # 阅读计划
 ├── notes/                # 阅读笔记
 │   ├── {paper_id}.md

package/skills/write-review-paper/references/note-template.md

@@ -1,6 +1,6 @@
 # Paper Note Template
 
-Use this template for each paper in `~/.openclaw/workspace/literature/notes/`.
+Use this template for each paper in `knowledge/`.
 
 ---
 

package/skills/write-review-paper/references/survey-template.md

@@ -1,6 +1,6 @@
 # Survey Paper Template
 
-Use this template for `$WORKSPACE/review/draft.md`:
+Use this template for `review/draft.md`:
 
 ```markdown
 # [Survey Title]: A Comprehensive Review

package/dist/src/hooks/research-mode.d.ts

@@ -1,22 +0,0 @@
-/**
- * Hook types (simplified for plugin use)
- */
-type HookEvent = {
-    prompt: string;
-    messages?: unknown[];
-};
-type HookContext = {
-    agentId?: string;
-    sessionKey?: string;
-    workspaceDir?: string;
-};
-type HookResult = {
-    prependContext?: string;
-    systemPrompt?: string;
-};
-/**
- * Injects on every prompt build (survives compaction).
- */
-export declare function createResearchModeHook(): (_event: HookEvent, _context: HookContext) => HookResult;
-export {};
-//# sourceMappingURL=research-mode.d.ts.map

package/dist/src/hooks/research-mode.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"research-mode.d.ts","sourceRoot":"","sources":["../../../src/hooks/research-mode.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,KAAK,SAAS,GAAG;IACf,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,CAAC,EAAE,OAAO,EAAE,CAAC;CACtB,CAAC;AAEF,KAAK,WAAW,GAAG;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB,CAAC;AAEF,KAAK,UAAU,GAAG;IAChB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB,CAAC;AA6BF;;GAEG;AACH,wBAAgB,sBAAsB,KAC5B,QAAQ,SAAS,EAAE,UAAU,WAAW,KAAG,UAAU,CAG9D"}

package/dist/src/hooks/research-mode.js

@@ -1,35 +0,0 @@
-/**
- * Research mode prompt injected into every conversation.
- */
-const RESEARCH_MODE_PROMPT = `[Scientify]
-Skills: match research tasks to <available_skills>; read SKILL.md before acting.
-Workspace: $W/projects/<topic>/. Check /research-status before writing. Active project in $W/projects/.active.
-  survey/ — search_terms.json, raw_results.json, filtered_papers.json, clusters.json, report.md (literature-survey)
-  papers/ — organized by cluster direction, each with paper_list.md + {arxiv_id}/ .tex sources (literature-survey)
-  notes/ — per-paper deep analysis paper_{id}.md (research-survey). survey_res.md = method comparison table.
-  ideas/ — gaps.md, idea_1..5.md, selected_idea.md, summary.md (idea-generation)
-  review/ — reading_plan.md, notes/{id}.md, comparison.md, taxonomy.md, draft.md, bibliography.bib (write-review-paper)
-  plan_res.md (research-plan) → project/ + ml_res.md (research-implement) → iterations/judge_v*.md (research-review) → experiment_res.md (research-experiment)
-Scheduling: if user asks for recurring or delayed push delivery (e.g. tomorrow at 08:00, daily digest), use research-subscription skill and call scientify_cron_job to create a real schedule.
-If it is a plain reminder (not research), set scientify_cron_job.message and do not default to the literature pipeline.
-For recurring research pushes, use scientify_literature_state to prepare dedupe context and record both pushed paper IDs and structured knowledge_state (changes, updates, hypotheses, run_log).
-Full-text-first policy: for papers used as core evidence, read full text when possible and mark full_text_read=true; if not fully read, you must explicitly mark full_text_read=false with unread_reason.
-Structured paper record policy: for each core paper, populate domain/subdomains/cross-domain links/research goal/approach/methodology design/key contributions/practical insights/must-understand points/limitations/evidence anchors.
-Use temporary local directory for full-text files (e.g. /tmp/scientify-fulltext/<run-id>) and delete it after record; write cleanup status to run_log.temp_cleanup_status.
-Quality targets for research runs: core full-text coverage >=80%; evidence-binding rate >=90% (key conclusions must bind to section+locator+quote); citation error rate <2%. If full text is missing, do not keep high-confidence conclusions.
-For research records, include project_id when available so state can persist under project knowledge_state/.
-When user gives preference feedback (e.g. "more like this", "skip this direction", "prefer arxiv"), quietly persist it via scientify_literature_state action=feedback when scope/topic are inferable.
-Preference memory is backend-only: use it to rerank future pushes, do not expose memory internals unless user explicitly asks.
-Do not stop at explanation when user explicitly asks to set a schedule.
-Rules: file exists = step done (skip). Outputs immutable unless user asks. project/ mutable during review loop.
-Execution: always use \`python3\` (not \`python\`) for shell commands in this environment.
-Rigor: read first, think second, answer third. Never fabricate references or results. Every claim needs a source. Say "I don't know" when uncertain. Read actual papers, not just abstracts. Ground ideas in real papers.`;
-/**
- * Injects on every prompt build (survives compaction).
- */
-export function createResearchModeHook() {
-    return (_event, _context) => {
-        return { prependContext: RESEARCH_MODE_PROMPT };
-    };
-}
-//# sourceMappingURL=research-mode.js.map

package/dist/src/hooks/research-mode.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"research-mode.js","sourceRoot":"","sources":["../../../src/hooks/research-mode.ts"],"names":[],"mappings":"AAmBA;;GAEG;AACH,MAAM,oBAAoB,GAAG;;;;;;;;;;;;;;;;;;;;;;0NAsB6L,CAAC;AAE3N;;GAEG;AACH,MAAM,UAAU,sBAAsB;IACpC,OAAO,CAAC,MAAiB,EAAE,QAAqB,EAAc,EAAE;QAC9D,OAAO,EAAE,cAAc,EAAE,oBAAoB,EAAE,CAAC;IAClD,CAAC,CAAC;AACJ,CAAC"}

package/dist/src/hooks/scientify-cron-autofill.d.ts

@@ -1,15 +0,0 @@
-type BeforeToolCallEvent = {
-    toolName: string;
-    params?: Record<string, unknown>;
-};
-type BeforeToolCallContext = {
-    sessionKey?: string;
-    agentId?: string;
-    channel?: string;
-    senderId?: string;
-};
-export declare function createScientifyCronAutofillHook(): (event: BeforeToolCallEvent, context: BeforeToolCallContext) => {
-    params: Record<string, unknown>;
-} | void;
-export {};
-//# sourceMappingURL=scientify-cron-autofill.d.ts.map

package/dist/src/hooks/scientify-cron-autofill.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"scientify-cron-autofill.d.ts","sourceRoot":"","sources":["../../../src/hooks/scientify-cron-autofill.ts"],"names":[],"mappings":"AAAA,KAAK,mBAAmB,GAAG;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CAClC,CAAC;AAEF,KAAK,qBAAqB,GAAG;IAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB,CAAC;AAoIF,wBAAgB,+BAA+B,KAE3C,OAAO,mBAAmB,EAC1B,SAAS,qBAAqB,KAC7B;IAAE,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAA;CAAE,GAAG,IAAI,CAiD9C"}

package/dist/src/hooks/scientify-cron-autofill.js

@@ -1,156 +0,0 @@
-const CHANNELS_WITH_TARGET = new Set([
-    "telegram",
-    "whatsapp",
-    "discord",
-    "irc",
-    "googlechat",
-    "slack",
-    "signal",
-    "imessage",
-    "feishu",
-    "nostr",
-    "msteams",
-    "mattermost",
-    "nextcloud-talk",
-    "matrix",
-    "bluebubbles",
-    "line",
-    "zalo",
-    "zalouser",
-    "synology-chat",
-    "tlon",
-]);
-function readString(value) {
-    if (typeof value !== "string")
-        return undefined;
-    const trimmed = value.trim();
-    return trimmed.length > 0 ? trimmed : undefined;
-}
-function readLowerString(value) {
-    const raw = readString(value);
-    return raw ? raw.toLowerCase() : undefined;
-}
-function splitSessionKeyParts(sessionKey) {
-    // OpenClaw may append thread suffix: ...:thread:<id>
-    // Strip that suffix first to avoid treating thread id as peer id.
-    const lower = sessionKey.toLowerCase();
-    const threadIndex = lower.lastIndexOf(":thread:");
-    const base = threadIndex >= 0 ? sessionKey.slice(0, threadIndex) : sessionKey;
-    return base.split(":").filter((part) => part.length > 0);
-}
-function joinParts(parts, start) {
-    const joined = parts.slice(start).join(":").trim();
-    return joined.length > 0 ? joined : undefined;
-}
-function deriveFromSessionKey(sessionKey) {
-    const raw = readString(sessionKey);
-    if (!raw)
-        return {};
-    // Canonical OpenClaw patterns:
-    // - agent:<agentId>:<channel>:direct:<peerId>
-    // - agent:<agentId>:<channel>:<accountId>:direct:<peerId>
-    // - agent:<agentId>:<channel>:group:<peerId>
-    // - agent:<agentId>:direct:<peerId>
-    const parts = splitSessionKeyParts(raw);
-    if (parts.length < 3 || parts[0].toLowerCase() !== "agent")
-        return {};
-    const rest = parts.slice(2);
-    if (rest.length === 0)
-        return {};
-    const token0 = rest[0]?.toLowerCase();
-    const token1 = rest[1]?.toLowerCase();
-    const token2 = rest[2]?.toLowerCase();
-    // agent:<agentId>:direct:<peerId>
-    if (token0 === "direct" || token0 === "dm") {
-        return { senderId: joinParts(rest, 1) };
-    }
-    // agent:<agentId>:<channel>:direct:<peerId>
-    if (token1 === "direct" || token1 === "dm") {
-        return {
-            channel: token0,
-            senderId: joinParts(rest, 2),
-        };
-    }
-    // agent:<agentId>:<channel>:<accountId>:direct:<peerId>
-    if (token2 === "direct" || token2 === "dm") {
-        return {
-            channel: token0,
-            senderId: joinParts(rest, 3),
-        };
-    }
-    // Non-direct session (group/channel/thread), peer id is still a valid delivery target.
-    if (rest.length >= 3) {
-        return {
-            channel: token0,
-            senderId: joinParts(rest, 2),
-        };
-    }
-    return { channel: token0 };
-}
-function deriveOrigin(context) {
-    const fromContext = {
-        channel: readLowerString(context.channel),
-        senderId: readString(context.senderId),
-    };
-    if (fromContext.channel && fromContext.senderId) {
-        return fromContext;
-    }
-    const fromSession = deriveFromSessionKey(context.sessionKey);
-    return {
-        channel: fromContext.channel ?? fromSession.channel,
-        senderId: fromContext.senderId ?? fromSession.senderId,
-    };
-}
-function sanitizeScopePart(value) {
-    const cleaned = value
-        .toLowerCase()
-        .replace(/[^a-z0-9_-]+/g, "-")
-        .replace(/-+/g, "-")
-        .replace(/^-|-$/g, "");
-    return cleaned || "unknown";
-}
-export function createScientifyCronAutofillHook() {
-    return (event, context) => {
-        if (event.toolName !== "scientify_cron_job")
-            return;
-        const params = event.params ?? {};
-        const action = readLowerString(params.action);
-        if (action !== "upsert")
-            return;
-        if (params.no_deliver === true)
-            return;
-        const explicitChannel = readLowerString(params.channel);
-        const explicitTo = readString(params.to);
-        const explicitScope = readString(params.scope);
-        const origin = deriveOrigin(context);
-        const originChannel = readLowerString(origin.channel);
-        const originSender = readString(origin.senderId);
-        let nextChannel = explicitChannel;
-        let nextTo = explicitTo;
-        let nextScope = explicitScope;
-        if (!nextChannel && originChannel && CHANNELS_WITH_TARGET.has(originChannel)) {
-            nextChannel = originChannel;
-        }
-        if (!nextTo && nextChannel && nextChannel !== "last" && originSender) {
-            if (!originChannel || originChannel === nextChannel) {
-                nextTo = originSender;
-            }
-        }
-        // Avoid global scope collisions across users when tool calls omit scope.
-        if (!nextScope && nextChannel && nextTo) {
-            nextScope = `${sanitizeScopePart(nextChannel)}-${sanitizeScopePart(nextTo)}`;
-        }
-        if (nextChannel === explicitChannel && nextTo === explicitTo && nextScope === explicitScope) {
-            return;
-        }
-        return {
-            params: {
-                ...params,
-                ...(nextChannel ? { channel: nextChannel } : {}),
-                ...(nextTo ? { to: nextTo } : {}),
-                ...(nextScope ? { scope: nextScope } : {}),
-            },
-        };
-    };
-}
-//# sourceMappingURL=scientify-cron-autofill.js.map

package/dist/src/hooks/scientify-cron-autofill.js.map

@@ -1 +0,0 @@
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package/dist/src/hooks/scientify-signature.d.ts

@@ -1,21 +0,0 @@
-type BaseHookContext = Record<string, unknown> & {
-    sessionKey?: string;
-    agentId?: string;
-};
-type BeforeToolCallEvent = {
-    toolName: string;
-    params?: Record<string, unknown>;
-};
-type BeforePromptBuildEvent = {
-    prompt?: string;
-    messages?: unknown[];
-};
-type PromptHookResult = {
-    prependContext?: string;
-};
-export declare function createScientifyUsageTrackerHook(): (event: BeforeToolCallEvent, context: BaseHookContext) => void;
-export declare function createScientifyMessageTrackerHook(): (event: unknown, context: BaseHookContext) => void;
-export declare function createScientifySignaturePromptHook(): (event: BeforePromptBuildEvent, context: BaseHookContext) => PromptHookResult | void;
-export declare function createScientifyUsageCleanupHook(): (event: unknown, context: BaseHookContext) => void;
-export {};
-//# sourceMappingURL=scientify-signature.d.ts.map

package/dist/src/hooks/scientify-signature.d.ts.map

@@ -1 +0,0 @@
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package/dist/src/hooks/scientify-signature.js

@@ -1,150 +0,0 @@
-const SCIENTIFY_TOOLS = new Set([
-    "arxiv_search",
-    "arxiv_download",
-    "github_search",
-    "paper_browser",
-    "openalex_search",
-    "unpaywall_download",
-    "scientify_cron_job",
-    "scientify_literature_state",
-]);
-const SCIENTIFY_SKILLS = new Set([
-    "idea-generation",
-    "research-pipeline",
-    "research-survey",
-    "research-plan",
-    "research-implement",
-    "research-review",
-    "research-experiment",
-    "literature-survey",
-    "write-review-paper",
-    "research-subscription",
-]);
-const SCIENTIFY_SKILL_COMMAND_RE = /(?:^|\s)\/(idea-generation|research-pipeline|research-survey|research-plan|research-implement|research-review|research-experiment|literature-survey|write-review-paper|research-subscription)(?:\s|$)/i;
-const SIGNATURE_PROMPT = `[Scientify Signature]
-If this response is based on Scientify workflow execution (Scientify skills/tools), append this exact footer at the end of your reply:
----
-🐍Scientify
-Do not add any text after the footer.`;
-// Track sessions that actually used Scientify workflow elements.
-const scientifyActiveSessions = new Set();
-function getTrackingKey(event, context) {
-    if (context.sessionKey)
-        return context.sessionKey;
-    if (context.agentId)
-        return context.agentId;
-    if (event && typeof event === "object") {
-        const record = event;
-        if (typeof record.sessionKey === "string")
-            return record.sessionKey;
-        if (typeof record.agentId === "string")
-            return record.agentId;
-    }
-    return undefined;
-}
-function readSkillFromTask(task) {
-    if (typeof task !== "string")
-        return undefined;
-    const match = task.match(/^\/([a-z][\w-]*)/);
-    return match?.[1];
-}
-function extractText(value) {
-    if (typeof value === "string")
-        return value;
-    if (Array.isArray(value)) {
-        return value
-            .map((item) => extractText(item))
-            .filter((part) => part.length > 0)
-            .join("\n");
-    }
-    if (value && typeof value === "object") {
-        const record = value;
-        if (typeof record.text === "string")
-            return record.text;
-        if (typeof record.content === "string")
-            return record.content;
-    }
-    return "";
-}
-function extractLastUserMessageText(messages) {
-    for (let i = messages.length - 1; i >= 0; i--) {
-        const item = messages[i];
-        if (!item || typeof item !== "object")
-            continue;
-        const record = item;
-        const role = typeof record.role === "string" ? record.role.toLowerCase() : "";
-        if (role !== "user")
-            continue;
-        return extractText(record.content);
-    }
-    return "";
-}
-function markScientifyUsageFromToolCall(event, trackingKey) {
-    if (SCIENTIFY_TOOLS.has(event.toolName)) {
-        scientifyActiveSessions.add(trackingKey);
-        return;
-    }
-    if (event.toolName !== "sessions_spawn")
-        return;
-    const skill = readSkillFromTask(event.params?.task);
-    if (skill && SCIENTIFY_SKILLS.has(skill)) {
-        scientifyActiveSessions.add(trackingKey);
-    }
-}
-export function createScientifyUsageTrackerHook() {
-    return (event, context) => {
-        const trackingKey = getTrackingKey(event, context);
-        if (!trackingKey)
-            return;
-        markScientifyUsageFromToolCall(event, trackingKey);
-    };
-}
-export function createScientifyMessageTrackerHook() {
-    return (event, context) => {
-        const trackingKey = getTrackingKey(event, context);
-        if (!trackingKey)
-            return;
-        if (!event || typeof event !== "object")
-            return;
-        const record = event;
-        const text = [
-            extractText(record.text),
-            extractText(record.content),
-            extractText(record.commandBody),
-            extractText(record.message),
-        ]
-            .filter((part) => part.length > 0)
-            .join("\n");
-        if (SCIENTIFY_SKILL_COMMAND_RE.test(text)) {
-            scientifyActiveSessions.add(trackingKey);
-        }
-    };
-}
-export function createScientifySignaturePromptHook() {
-    return (event, context) => {
-        const trackingKey = getTrackingKey(event, context);
-        if (trackingKey && scientifyActiveSessions.has(trackingKey)) {
-            return { prependContext: SIGNATURE_PROMPT };
-        }
-        // Heuristic fallback: user explicitly invoked a Scientify skill command.
-        const promptText = typeof event.prompt === "string" ? event.prompt : "";
-        const lastUserText = Array.isArray(event.messages) ? extractLastUserMessageText(event.messages) : "";
-        const combined = `${promptText}\n${lastUserText}`;
-        if (SCIENTIFY_SKILL_COMMAND_RE.test(combined)) {
-            if (trackingKey) {
-                scientifyActiveSessions.add(trackingKey);
-            }
-            return { prependContext: SIGNATURE_PROMPT };
-        }
-        return;
-    };
-}
-export function createScientifyUsageCleanupHook() {
-    return (event, context) => {
-        const trackingKey = getTrackingKey(event, context);
-        if (!trackingKey)
-            return;
-        scientifyActiveSessions.delete(trackingKey);
-    };
-}
-//# sourceMappingURL=scientify-signature.js.map

package/dist/src/hooks/scientify-signature.js.map

@@ -1 +0,0 @@
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package/dist/src/knowledge-state/project.d.ts

@@ -1,13 +0,0 @@
-export type ProjectContext = {
-    projectId: string;
-    projectPath: string;
-    created: boolean;
-};
-export declare function resolveProjectContext(args: {
-    projectId?: string;
-    scope: string;
-    topic: string;
-    autoCreate?: boolean;
-}): Promise<ProjectContext>;
-export declare function getProjectRootPath(): string;
-//# sourceMappingURL=project.d.ts.map

package/dist/src/knowledge-state/project.d.ts.map

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