scientify 1.6.2 → 1.7.1

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAC;AAsBlD,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,GAAG,EAAE,iBAAiB,QA2FtD"}

package/dist/index.js

@@ -8,6 +8,7 @@ import { createOpenAlexSearchTool } from "./src/tools/openalex-search.js";
 import { createUnpaywallDownloadTool } from "./src/tools/unpaywall-download.js";
 import { createAutoUpdaterService } from "./src/services/auto-updater.js";
 import { createSkillInjectionHook } from "./src/hooks/inject-skill.js";
+import { createResearchModeHook } from "./src/hooks/research-mode.js";
 // Default: check every hour
 const UPDATE_CHECK_INTERVAL_MS = 60 * 60 * 1000;
 export default function register(api) {
@@ -81,6 +82,12 @@ export default function register(api) {
     // api.source = entry file path (e.g. dist/index.js); findPluginRoot() walks
     // up to locate openclaw.plugin.json, which is always at the plugin root.
     api.on("before_tool_call", createSkillInjectionHook(path.dirname(api.source)));
-    api.logger.info("Scientify plugin loaded successfully");
+    // Inject research mode prompt into all conversations.
+    // This reminds the agent to use research skills for academic tasks.
+    // The agent decides whether to use skills based on task type.
+    api.on("before_prompt_build", createResearchModeHook(), {
+        priority: 100, // High priority to inject early
+    });
+    api.logger.info("Scientify plugin loaded (research mode: always active)");
 }
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/dist/src/hooks/research-mode.d.ts

@@ -0,0 +1,26 @@
+/**
+ * Hook types (simplified for plugin use)
+ */
+type HookEvent = {
+    prompt: string;
+    messages?: unknown[];
+};
+type HookContext = {
+    agentId?: string;
+    sessionKey?: string;
+    workspaceDir?: string;
+};
+type HookResult = {
+    prependContext?: string;
+    systemPrompt?: string;
+};
+/**
+ * Creates the research mode hook that injects enhancement prompt
+ * into all conversations when scientify is active.
+ *
+ * This ensures agents are always aware of available research skills
+ * and know how to use them properly.
+ */
+export declare function createResearchModeHook(): (_event: HookEvent, _context: HookContext) => HookResult;
+export {};
+//# sourceMappingURL=research-mode.d.ts.map

package/dist/src/hooks/research-mode.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/hooks/research-mode.js

@@ -0,0 +1,137 @@
+/**
+ * Research Mode Enhancement Prompt
+ *
+ * Injected into every conversation when scientify is active.
+ * Reminds the agent to use research skills for academic tasks.
+ */
+const RESEARCH_MODE_PROMPT = `
+# 🔬 Scientify Research Assistant
+
+You have access to specialized research workflows (skills) for academic tasks.
+
+## Available Research Skills (For You to Use)
+
+When the user requests research work, use these skills:
+
+### literature-survey
+Search & download academic papers from arXiv, OpenAlex, and GitHub repositories.
+
+**When to use**: User asks for literature review, paper search, related work survey.
+
+**How to use**:
+1. Find skill path in <available_skills>
+2. Read the SKILL.md: read({ file_path: "<path-from-available_skills>" })
+3. Follow every step exactly
+
+### research-pipeline
+Complete end-to-end research pipeline: literature survey → deep analysis → planning → implementation → review → experiments.
+
+**When to use**: User wants full research workflow from papers to final results.
+
+**How to use**:
+1. Find skill path in <available_skills>
+2. Read the SKILL.md: read({ file_path: "<path-from-available_skills>" })
+3. Follow the orchestration steps (this skill will spawn sub-agents for each phase)
+
+**Important**: research-pipeline uses sessions_spawn to create specialized sub-agents. You don't need to manually run research-survey, research-plan, etc. - the pipeline handles that internally.
+
+## When NOT to Use Skills
+
+Handle these normally without skills:
+- General programming questions
+- File operations, debugging
+- Casual conversation
+- Non-academic queries
+
+## How to Use Skills (IMPORTANT)
+
+When you identify a research task:
+
+1. **Identify** the matching skill from the list above
+2. **Locate** the skill file path from \`<available_skills>\` in your system prompt
+3. **Read** the skill file completely: \`read({ file_path: "<skill-path-from-available_skills>" })\`
+4. **Execute** every step in the SKILL.md exactly as written
+
+**Do NOT**:
+- ❌ Skip reading the skill file
+- ❌ Improvise your own workflow
+- ❌ Assume you remember the steps from previous sessions
+
+## Project Management (You Handle This)
+
+For research tasks, you automatically manage project structure:
+
+1. **Check** if project exists: \`read({ file_path: "$W/projects/<topic>/task.json" })\`
+2. **Create** if needed: Use \`write\` to create directory structure and task.json
+3. **Load** context: Read existing task.json to understand current status
+4. **Continue** work: Resume from the last completed phase
+
+User doesn't need to run commands. You create and manage projects automatically.
+
+### Example Project Structure
+
+\`\`\`
+$W/projects/<topic>/
+├── task.json           # Project metadata & status
+├── papers/             # Downloaded papers
+│   └── _meta/         # Paper metadata
+├── repos/              # Reference code repositories
+├── survey_res.md       # Literature survey results
+├── plan_res.md         # Implementation plan
+├── project/            # Your implementation
+└── experiment_res.md   # Experiment results
+\`\`\`
+
+## Example Workflows
+
+### Example 1: Literature Survey Only
+
+\`\`\`
+User: "Survey recent papers on Vision Transformers"
+
+You:
+1. Identify: Literature survey task
+2. Skill: literature-survey
+3. Read: literature-survey/SKILL.md from <available_skills>
+4. Project: Create $W/projects/vision-transformer-survey/
+5. Execute: Follow search → download → categorize steps
+6. Output: survey_res.md with categorized papers
+\`\`\`
+
+### Example 2: Complete Research Pipeline
+
+\`\`\`
+User: "I want to implement Vision Transformer on MNIST, from literature survey to experiments"
+
+You:
+1. Identify: Full research workflow
+2. Skill: research-pipeline
+3. Read: research-pipeline/SKILL.md from <available_skills>
+4. Project: Create $W/projects/vit-mnist/
+5. Execute: Follow orchestration steps
+   - Pipeline spawns sub-agents for survey, analysis, planning, coding, review, experiments
+   - You don't manually read research-survey, research-implement, etc.
+6. Output: Complete research project with all deliverables
+\`\`\`
+
+---
+
+**Remember**: Skills contain precise workflows tested in production. Read them before acting, don't guess.
+`;
+/**
+ * Creates the research mode hook that injects enhancement prompt
+ * into all conversations when scientify is active.
+ *
+ * This ensures agents are always aware of available research skills
+ * and know how to use them properly.
+ */
+export function createResearchModeHook() {
+    return (_event, _context) => {
+        // Unconditionally inject research mode prompt
+        // The agent will decide whether to use skills based on task type
+        return {
+            prependContext: RESEARCH_MODE_PROMPT,
+        };
+    };
+}
+//# sourceMappingURL=research-mode.js.map

package/dist/src/hooks/research-mode.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "scientify",
-  "version": "1.6.2",
+  "version": "1.7.1",
   "description": "Scientify - AI-powered research workflow automation for OpenClaw. Includes idea generation, literature review, research pipeline skills, and arxiv tool.",
   "type": "module",
   "main": "dist/index.js",
@@ -29,6 +29,16 @@
   "bugs": {
     "url": "https://github.com/tsingyuai/scientify/issues"
   },
+  "scripts": {
+    "build": "tsc",
+    "clean": "rm -rf dist",
+    "dev": "tsc --watch",
+    "dev:link": "npm run build && rm -rf ~/.openclaw/extensions/scientify && ln -sfn \"$(pwd)\" ~/.openclaw/extensions/scientify",
+    "dev:unlink": "rm -f ~/.openclaw/extensions/scientify",
+    "dev:reload": "nodemon --watch src --watch skills --ext ts,md,json --exec \"npm run build && pkill -USR1 -f 'openclaw.mjs gateway' || true\" --delay 500ms",
+    "prepublishOnly": "npm run clean && npm run build",
+    "release": "npm version patch && git push && git push --tags"
+  },
   "devDependencies": {
     "@semantic-release/changelog": "^6.0.3",
     "@semantic-release/commit-analyzer": "^13.0.1",
@@ -51,14 +61,5 @@
     "extensions": [
       "./dist/index.js"
     ]
-  },
-  "scripts": {
-    "build": "tsc",
-    "clean": "rm -rf dist",
-    "dev": "tsc --watch",
-    "dev:link": "npm run build && rm -rf ~/.openclaw/extensions/scientify && ln -sfn \"$(pwd)\" ~/.openclaw/extensions/scientify",
-    "dev:unlink": "rm -f ~/.openclaw/extensions/scientify",
-    "dev:reload": "nodemon --watch src --watch skills --ext ts,md,json --exec \"npm run build && pkill -USR1 -f 'openclaw.mjs gateway' || true\" --delay 500ms",
-    "release": "npm version patch && git push && git push --tags"
   }
-}
+}