scientify 1.6.0 → 1.6.1

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAC;AAkBlD,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,GAAG,EAAE,iBAAiB,QAiFtD"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../index.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,UAAU,CAAC;AAmBlD,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,GAAG,EAAE,iBAAiB,QAkFtD"}

package/dist/index.js

@@ -3,6 +3,7 @@ import { handleResearchStatus, handlePapers, handleIdeas, handleProjects, handle
 import { createArxivSearchTool } from "./src/tools/arxiv-search.js";
 import { createArxivDownloadTool } from "./src/tools/arxiv-download.js";
 import { createGithubSearchTool } from "./src/tools/github-search-tool.js";
+import { createPaperBrowserTool } from "./src/tools/paper-browser.js";
 import { createAutoUpdaterService } from "./src/services/auto-updater.js";
 import { createSkillInjectionHook } from "./src/hooks/inject-skill.js";
 // Default: check every hour
@@ -12,6 +13,7 @@ export default function register(api) {
     api.registerTool(createArxivSearchTool());
     api.registerTool(createArxivDownloadTool());
     api.registerTool(createGithubSearchTool());
+    api.registerTool(createPaperBrowserTool());
     // Register auto-updater service (silent updates)
     const pluginConfig = api.pluginConfig;
     const autoUpdateEnabled = pluginConfig?.autoUpdate !== false; // enabled by default

package/dist/index.js.map

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package/dist/src/tools/paper-browser.d.ts

@@ -0,0 +1,24 @@
+export declare const PaperBrowserToolSchema: import("@sinclair/typebox").TObject<{
+    file_path: import("@sinclair/typebox").TString;
+    start_line: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
+    num_lines: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
+}>;
+export declare function createPaperBrowserTool(): {
+    label: string;
+    name: string;
+    description: string;
+    parameters: import("@sinclair/typebox").TObject<{
+        file_path: import("@sinclair/typebox").TString;
+        start_line: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
+        num_lines: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
+    }>;
+    execute: (_toolCallId: string, rawArgs: unknown) => Promise<{
+        type: "tool_result";
+        content: {
+            type: "text";
+            text: string;
+        }[];
+        isError?: boolean;
+    }>;
+};
+//# sourceMappingURL=paper-browser.d.ts.map

package/dist/src/tools/paper-browser.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/tools/paper-browser.js

@@ -0,0 +1,121 @@
+import { Type } from "@sinclair/typebox";
+import { readFileSync, existsSync, statSync } from "node:fs";
+import { Result } from "./result.js";
+const DEFAULT_VIEWPORT_SIZE = 100;
+const MAX_VIEWPORT_SIZE = 500;
+export const PaperBrowserToolSchema = Type.Object({
+    file_path: Type.String({
+        description: "Path to the paper file (.tex, .md, or any text file).",
+    }),
+    start_line: Type.Optional(Type.Number({
+        description: "Starting line number (1-indexed). Default: 1.",
+        minimum: 1,
+    })),
+    num_lines: Type.Optional(Type.Number({
+        description: `Number of lines to display (default: ${DEFAULT_VIEWPORT_SIZE}, max: ${MAX_VIEWPORT_SIZE}).`,
+        minimum: 1,
+        maximum: MAX_VIEWPORT_SIZE,
+    })),
+});
+function readStringParam(params, key, opts) {
+    const value = params[key];
+    if (value === undefined || value === null) {
+        if (opts?.required) {
+            throw new Error(`Missing required parameter: ${key}`);
+        }
+        return undefined;
+    }
+    return String(value);
+}
+function readNumberParam(params, key, opts) {
+    const value = params[key];
+    if (value === undefined || value === null)
+        return undefined;
+    const num = Number(value);
+    if (isNaN(num))
+        return undefined;
+    return opts?.integer ? Math.floor(num) : num;
+}
+export function createPaperBrowserTool() {
+    return {
+        label: "Paper Browser",
+        name: "paper_browser",
+        description: "Read large paper files (.tex, .md) in paginated chunks. Use this to avoid loading entire multi-thousand-line files into context at once. Returns a viewport of lines with navigation information.",
+        parameters: PaperBrowserToolSchema,
+        execute: async (_toolCallId, rawArgs) => {
+            const params = rawArgs;
+            const filePath = readStringParam(params, "file_path", { required: true });
+            const startLine = Math.max(1, readNumberParam(params, "start_line", { integer: true }) ?? 1);
+            const numLines = Math.min(readNumberParam(params, "num_lines", { integer: true }) ?? DEFAULT_VIEWPORT_SIZE, MAX_VIEWPORT_SIZE);
+            // Validate file exists
+            if (!existsSync(filePath)) {
+                return Result.err("file_not_found", `File does not exist: ${filePath}`);
+            }
+            // Check if it's a file (not directory)
+            let stats;
+            try {
+                stats = statSync(filePath);
+            }
+            catch (error) {
+                return Result.err("file_error", `Cannot access file: ${error instanceof Error ? error.message : String(error)}`);
+            }
+            if (!stats.isFile()) {
+                return Result.err("not_a_file", `Path is not a file: ${filePath}`);
+            }
+            // Read file content
+            let content;
+            try {
+                content = readFileSync(filePath, "utf-8");
+            }
+            catch (error) {
+                return Result.err("read_error", `Failed to read file: ${error instanceof Error ? error.message : String(error)}`);
+            }
+            // Split into lines
+            const lines = content.split("\n");
+            const totalLines = lines.length;
+            // Validate start line
+            if (startLine > totalLines) {
+                return Result.err("invalid_range", `Start line ${startLine} exceeds total lines ${totalLines}`);
+            }
+            // Extract viewport
+            const endLine = Math.min(startLine + numLines - 1, totalLines);
+            const viewportLines = lines.slice(startLine - 1, endLine);
+            // Add line numbers (matching cat -n format for consistency with Read tool)
+            const numberedLines = viewportLines
+                .map((line, idx) => {
+                const lineNum = startLine + idx;
+                return `${lineNum.toString().padStart(6, " ")}\t${line}`;
+            })
+                .join("\n");
+            // Navigation hints
+            const hasMore = endLine < totalLines;
+            const hasPrev = startLine > 1;
+            let navigationHint = "";
+            if (hasMore && hasPrev) {
+                navigationHint = `\n\nNavigate: paper_browser({ file_path: "${filePath}", start_line: ${endLine + 1} }) for next page, or start_line: ${Math.max(1, startLine - numLines)} for previous page.`;
+            }
+            else if (hasMore) {
+                navigationHint = `\n\nMore content below. Use: paper_browser({ file_path: "${filePath}", start_line: ${endLine + 1} })`;
+            }
+            else if (hasPrev) {
+                navigationHint = `\n\nEnd of file. Use: paper_browser({ file_path: "${filePath}", start_line: ${Math.max(1, startLine - numLines)} }) for previous page.`;
+            }
+            else {
+                navigationHint = "\n\n[End of file]";
+            }
+            return Result.ok({
+                file_path: filePath,
+                total_lines: totalLines,
+                viewport: {
+                    start_line: startLine,
+                    end_line: endLine,
+                    num_lines: viewportLines.length,
+                },
+                content: numberedLines + navigationHint,
+                has_more: hasMore,
+                has_prev: hasPrev,
+            });
+        },
+    };
+}
+//# sourceMappingURL=paper-browser.js.map

package/dist/src/tools/paper-browser.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "scientify",
-  "version": "1.6.0",
+  "version": "1.6.1",
   "description": "Scientify - AI-powered research workflow automation for OpenClaw. Includes idea generation, literature review, research pipeline skills, and arxiv tool.",
   "type": "module",
   "main": "dist/index.js",

package/skills/literature-survey/SKILL.md

@@ -114,12 +114,25 @@ arxiv_download({
 - 核心方法名 + 作者名
 - 论文中提到的数据集名 + 任务名
 
-使用 `web_search` 或 `exec` 调用 GitHub API：
-```bash
-# 示例：
-web_search({ query: "{paper_title} implementation github" })
+使用 `github_search` 工具：
+```javascript
+// 示例：
+github_search({
+  query: "{paper_title} implementation",
+  max_results: 10,
+  sort: "stars",
+  language: "python"  // 可选：根据论文领域选择语言
+})
+
+// 如果有具体方法名：
+github_search({
+  query: "{method_name} {author_last_name}",
+  max_results: 5
+})
 ```
 
+**提示**：如果需要 GitHub API 高频率限制，设置环境变量 `GITHUB_TOKEN`。
+
 #### 3.3 筛选与 clone
 
 对搜索到的仓库，评估：

package/skills/research-survey/SKILL.md

@@ -61,6 +61,15 @@ ls $W/papers/_meta/
 - **Model Architecture** section
 - 数学公式定义
 
+**对于大型论文**（>2000 行），使用 `paper_browser` 分页阅读：
+```javascript
+// 先读前 100 行找到 section 位置
+paper_browser({ file_path: "$W/papers/{arxiv_id}/{file}.tex", start_line: 1, num_lines: 100 })
+
+// 找到 Method section 后，跳转到该位置
+paper_browser({ file_path: "$W/papers/{arxiv_id}/{file}.tex", start_line: 450, num_lines: 150 })
+```
+
 如果没有 .tex（只有 PDF），基于 abstract 分析。
 
 #### 2.2 提取核心内容