scientify 1.11.0 → 1.12.1

package/dist/src/research-subscriptions/prompt.js

@@ -194,6 +194,8 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
         run_log: {
             model: "model-name",
             duration_ms: 1200,
+            required_core_papers: preferences.max_papers,
+            required_full_text_coverage_pct: 80,
             temp_full_text_dir: "/tmp/scientify-fulltext/run-123",
             temp_files_downloaded: 3,
             temp_cleanup_status: "done",
@@ -207,6 +209,7 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
         scope: scopeKey,
         topic: effectiveTopic,
         ...(projectId ? { project_id: projectId } : {}),
+        run_id: "run-20260309T103000Z",
         status: "ok",
         papers: recordPaperTemplate,
         knowledge_state: knowledgeStateTemplate,
@@ -216,6 +219,7 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
         scope: scopeKey,
         topic: effectiveTopic,
         ...(projectId ? { project_id: projectId } : {}),
+        run_id: "run-20260309T103000Z-fallback",
         status: "fallback_representative",
         papers: recordPaperTemplate,
         knowledge_state: {
@@ -224,6 +228,8 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
                 model: "model-name",
                 duration_ms: 1300,
                 degraded: true,
+                required_core_papers: preferences.max_papers,
+                required_full_text_coverage_pct: 80,
                 temp_full_text_dir: "/tmp/scientify-fulltext/run-123",
                 temp_files_downloaded: 1,
                 temp_cleanup_status: "done",
@@ -239,6 +245,7 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
         scope: scopeKey,
         topic: effectiveTopic,
         ...(projectId ? { project_id: projectId } : {}),
+        run_id: "run-20260309T103000Z-empty",
         status: "empty",
         papers: [],
         knowledge_state: {
@@ -250,6 +257,8 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
             hypotheses: [],
             run_log: {
                 model: "model-name",
+                required_core_papers: preferences.max_papers,
+                required_full_text_coverage_pct: 80,
                 temp_cleanup_status: "not_needed",
                 notes: "No suitable paper found in this cycle.",
             },
@@ -261,7 +270,11 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
             `/research-pipeline Run a focused literature study on \"${effectiveTopic}\" and return up to ${preferences.max_papers} high-value representative papers.`,
             "",
             "Mandatory workflow:",
+            "0) Truthfulness contract: do not claim background progress unless a real async handle exists. If you did not create a cron job/task id, this run must finish in this turn.",
+            "0.1) This run already has an async handle (cron). Do not call `scientify_cron_job` again from inside this run, and do not create nested `run_now` jobs.",
             `1) Call tool \`scientify_literature_state\` with: ${preparePayload}`,
+            "1.1) `no_deliver` only controls delivery. You still must call `scientify_literature_state.record` for persistence.",
+            "1.2) Reuse the exact `scope` and `topic` returned by `prepare` in `record` and `status`. Do not replace scope with project id.",
             "2) Read `memory_hints` from prepare result. Treat preferred keywords/sources as positive ranking priors, and avoided ones as negative priors.",
             `3) Build a candidate pool of around ${candidatePool} papers when possible, matching returned preferences (sources/recency).`,
             `4) Score each candidate with weighted dimensions (${scoreWeightsText}). Each dimension is 0-100, then compute weighted average score.`,
@@ -270,27 +283,36 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
             "7) Create a temporary local directory for full text (for example `/tmp/scientify-fulltext/<run-id>`). Download full text for selected core papers when possible (arXiv PDF/source first, then DOI OA PDF if available).",
             "8) Read full text with `paper_browser` in sections (method, experiments, limitations). Extract structured fields per paper: `domain`, `subdomains`, `cross_domain_links`, `research_goal`, `approach`, `methodology_design`, `key_contributions`, `practical_insights`, `must_understand_points`, `limitations`, and `evidence_anchors`.",
             "9) For papers without full text, explicitly set `full_text_read=false` and provide `unread_reason`.",
+            "9.1) Set a unique `run_id` for this cycle (cron run id preferred; otherwise generate a timestamp-based id). Reusing the same run_id can cause idempotent no-op writes.",
             `10) Call \`scientify_literature_state\` to persist selected papers and knowledge_state details using this JSON shape: ${recordTemplate}`,
             "11) `knowledge_state.core_papers` must include all selected papers with id/title/url/score/reason and structured reading fields (not placeholders).",
             "12) `knowledge_state.knowledge_changes` and `knowledge_state.knowledge_updates` must reflect this run's actual findings and include `evidence_ids` whenever available.",
             "13) Quality targets must be met: core full-text coverage >= 80%, evidence-binding rate >= 90% (key conclusions backed by section+locator+quote), citation error rate < 2%.",
             "14) Without sufficient full-text evidence, do not keep high-confidence conclusions; downgrade confidence explicitly.",
-            "15) For hypotheses, include at least one `evidence_ids` entry and a concrete `dependency_path` when applicable. Prioritize evidence from full-text-read papers.",
-            "16) If a hypothesis is high-impact, optionally run `openreview_lookup` or additional literature search and fill `validation_status`/`validation_notes`/`validation_evidence`.",
-            "17) After recording state, clean temporary full-text files. Put cleanup outcome in `run_log.temp_cleanup_status` (`done|partial|failed|not_needed`) and optional `temp_cleanup_note`.",
-            "18) Keep `run_log.notes` factual (candidate count, filtering reason, fallback/no-fallback).",
-            "19) In user-facing output, always include a numbered paper list with title + direct source URL + one-line value. Never claim papers were selected without listing links.",
-            "20) Do not display raw score/reason unless explicitly requested.",
-            "21) If nothing suitable is found, still call record with empty papers using:",
+            "15) If `knowledge_changes` contains BRIDGE (or REVISE+CONFIRM contradiction signals), run at least one reflection query immediately and write it into `knowledge_state.exploration_trace` with query/reason/source/candidates/filtered_to.",
+            "15.1) Do not emit BRIDGE without grounded evidence_ids linked to this run's papers; at least one bridge evidence should be full-text-backed.",
+            "16) For hypotheses, use research-grade gate: at least 2 `evidence_ids`, dependency_path length >= 2, and include novelty+feasibility+impact scores. Evidence should be resolved and preferably full-text-backed.",
+            "16.1) If user provided hard constraints (for example exact/min core paper count), set `run_log.required_core_papers` accordingly and do not return status `ok` unless the requirement is met.",
+            "17) If a hypothesis is high-impact, optionally run `openreview_lookup` or additional literature search and fill `validation_status`/`validation_notes`/`validation_evidence`.",
+            "18) After recording state, clean temporary full-text files. Put cleanup outcome in `run_log.temp_cleanup_status` (`done|partial|failed|not_needed`) and optional `temp_cleanup_note`.",
+            "19) Keep `run_log.notes` factual (candidate count, filtering reason, reflection action, fallback/no-fallback).",
+            "20) In user-facing output, always include a numbered paper list with title + direct source URL + one-line value. Never claim papers were selected without listing links.",
+            "21) Do not display raw score/reason unless explicitly requested.",
+            "22) If nothing suitable is found, still call record with empty papers using:",
             `${recordEmptyTemplate}`,
             "Then respond: `No new literature found.`",
+            "23) After `record`, call `scientify_literature_state.status` once and include `run_id`/`latest_run_id` in your response for verifiable traceability.",
         ].join("\n");
     }
     return [
         `/research-pipeline Run an incremental literature check focused on \"${effectiveTopic}\".`,
         "",
         "Mandatory workflow:",
+        "0) Truthfulness contract: do not claim background progress unless a real async handle exists. If you did not create a cron job/task id, this run must finish in this turn.",
+        "0.1) This run already has an async handle (cron). Do not call `scientify_cron_job` again from inside this run, and do not create nested `run_now` jobs.",
         `1) Call tool \`scientify_literature_state\` with: ${preparePayload}`,
+        "1.1) `no_deliver` only controls delivery. You still must call `scientify_literature_state.record` for persistence.",
+        "1.2) Reuse the exact `scope` and `topic` returned by `prepare` in `record` and `status`. Do not replace scope with project id.",
         "2) Read `memory_hints` from prepare result. Use them as quiet personalization priors in ranking (not user-facing).",
         "3) Treat `exclude_paper_ids` as hard dedupe constraints. Do not push papers whose IDs are already in that list.",
         `4) Incremental pass: build a candidate pool of around ${candidatePool} unseen papers when possible, following preferences (sources/recency).`,
@@ -300,21 +322,27 @@ export function buildScheduledTaskMessage(options, scheduleKind, scopeKey) {
         "8) Create a temporary local directory for full text (for example `/tmp/scientify-fulltext/<run-id>`). Download full text for selected core papers when possible (arXiv first, then DOI OA if available).",
         "9) Read full text with `paper_browser` and fill structured paper fields: `domain`, `subdomains`, `cross_domain_links`, `research_goal`, `approach`, `methodology_design`, `key_contributions`, `practical_insights`, `must_understand_points`, `limitations`, and `evidence_anchors`.",
         "10) If full text cannot be read, set `full_text_read=false` with explicit `unread_reason`.",
+        "10.1) Set a unique `run_id` for this cycle (cron run id preferred; otherwise generate a timestamp-based id). Reusing the same run_id can cause idempotent no-op writes.",
         `11) If selected > 0, call \`scientify_literature_state\` with status \`ok\` using: ${recordTemplate}`,
         "12) `knowledge_state.core_papers` must contain all selected papers with id/title/url/score/reason and structured reading fields; `exploration_trace` should include query/source/candidates/filtered_to/filter reasons when available.",
         "13) `knowledge_state.knowledge_changes` and `knowledge_state.hypotheses` should include evidence_ids (and dependency_path for hypotheses) whenever available, preferably from full-text-read papers.",
         "14) Quality targets must be met: core full-text coverage >= 80%, evidence-binding rate >= 90% (key conclusions backed by section+locator+quote), citation error rate < 2%.",
         "15) Without sufficient full-text evidence, do not keep high-confidence conclusions; downgrade confidence explicitly.",
-        "16) For top hypotheses, optionally validate risk via `openreview_lookup` and fill `validation_status`/`validation_notes`/`validation_evidence`.",
-        "17) If incremental selection is empty, run one fallback representative pass (ignore `exclude_paper_ids` once) and select best representative papers.",
-        `18) If fallback returns papers, call \`scientify_literature_state\` with status \`fallback_representative\` using: ${recordFallbackTemplate}`,
-        "19) After recording state, clean temporary full-text files and set `run_log.temp_cleanup_status` accordingly (`done|partial|failed|not_needed`).",
-        "20) If papers are selected (incremental or fallback), output a numbered list with title + direct source URL + one-line value for each pushed paper.",
-        "21) Output a compact progress report for this cycle: what changed, what matters, and a concrete plan for the next 1 hour.",
-        "22) Keep user-facing output concise; do not expose raw score/reason unless explicitly requested.",
-        "23) If both incremental and fallback passes are empty, call record with empty papers using:",
+        "16) If `knowledge_changes` contains BRIDGE (or REVISE+CONFIRM contradiction signals), run at least one reflection query immediately and write it into `knowledge_state.exploration_trace` with query/reason/source/candidates/filtered_to.",
+        "16.1) Do not emit BRIDGE without grounded evidence_ids linked to this run's papers; at least one bridge evidence should be full-text-backed.",
+        "17) Research-grade hypothesis gate: each hypothesis should have >=2 evidence_ids, dependency_path length >=2, novelty+feasibility+impact scores, and evidence linked to this run's papers (full-text-backed when possible).",
+        "17.1) If user provided hard constraints (for example exact/min core paper count), set `run_log.required_core_papers` accordingly and do not return status `ok` unless the requirement is met.",
+        "18) For top hypotheses, optionally validate risk via `openreview_lookup` and fill `validation_status`/`validation_notes`/`validation_evidence`.",
+        "19) If incremental selection is empty, run one fallback representative pass (ignore `exclude_paper_ids` once) and select best representative papers.",
+        `20) If fallback returns papers, call \`scientify_literature_state\` with status \`fallback_representative\` using: ${recordFallbackTemplate}`,
+        "21) After recording state, clean temporary full-text files and set `run_log.temp_cleanup_status` accordingly (`done|partial|failed|not_needed`).",
+        "22) If papers are selected (incremental or fallback), output a numbered list with title + direct source URL + one-line value for each pushed paper.",
+        "23) Output a compact progress report for this cycle: what changed, what matters, and a concrete plan for the next 1 hour.",
+        "24) Keep user-facing output concise; do not expose raw score/reason unless explicitly requested.",
+        "25) If both incremental and fallback passes are empty, call record with empty papers using:",
         `${recordEmptyTemplate}`,
-        "24) Then still return a useful progress status with next-hour actions (instead of only a generic reminder).",
+        "26) Then still return a useful progress status with next-hour actions (instead of only a generic reminder).",
+        "27) After `record`, call `scientify_literature_state.status` and include `run_id`/`latest_run_id` in your response for verifiable traceability.",
     ].join("\n");
 }
 export function formatUsage() {

package/dist/src/research-subscriptions/prompt.js.map

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package/dist/src/templates/bootstrap.d.ts

@@ -0,0 +1,8 @@
+/**
+ * Templates for research project agent workspace files.
+ * Generated by `openclaw research init <id>` CLI command.
+ */
+export declare function renderBootstrapMd(projectName: string): string;
+export declare function renderSoulMd(projectName: string): string;
+export declare function renderAgentsMd(): string;
+//# sourceMappingURL=bootstrap.d.ts.map

package/dist/src/templates/bootstrap.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"bootstrap.d.ts","sourceRoot":"","sources":["../../../src/templates/bootstrap.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CA6C7D;AAED,wBAAgB,YAAY,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAexD;AAED,wBAAgB,cAAc,IAAI,MAAM,CAqFvC"}

package/dist/src/templates/bootstrap.js

@@ -0,0 +1,153 @@
+/**
+ * Templates for research project agent workspace files.
+ * Generated by `openclaw research init <id>` CLI command.
+ */
+export function renderBootstrapMd(projectName) {
+    return `# Research Agent Bootstrap
+
+你刚刚被创建为课题「${projectName}」的研究 agent。你需要完成首次配置。
+
+## 引导流程
+
+1. 向用户问好，说明你是课题「${projectName}」的研究 agent，请用户描述研究方向
+2. 根据用户回答，提取：
+   - 核心域关键词（3-5 个）
+   - 建议的 arXiv 分类（如 cs.LG, cs.AI）
+   - 建议的监测带相邻领域分类
+3. 向用户确认以上配置，接受调整
+4. 确认后执行以下写入操作：
+   - 更新 SOUL.md：填写研究方向、核心域、监测带各字段
+   - 生成 metabolism/config.json（参考下方模板）
+5. 询问用户是否立即执行 Day 0（构建初始知识状态 K(T0)）
+   - 如果是，使用 arxiv_search 按配置的关键词检索论文，执行 skills/metabolism/SKILL.md 中的四步循环
+6. 删除本文件（BOOTSTRAP.md）
+
+## config.json 模板
+
+\`\`\`json
+{
+  "projectId": "${projectName}",
+  "coreQuery": {
+    "keywords": ["关键词1", "关键词2"],
+    "arxivCategories": ["cs.LG"],
+    "dateMode": "daily-new"
+  },
+  "monitorZone": {
+    "categories": ["相邻领域分类"],
+    "enabled": true
+  },
+  "heartbeat": {
+    "cronExpression": "0 6 * * *",
+    "timezone": "Asia/Shanghai",
+    "enabled": true
+  },
+  "agentId": "research-${projectName}",
+  "currentDay": 0,
+  "createdAt": "${new Date().toISOString()}"
+}
+\`\`\`
+`;
+}
+export function renderSoulMd(projectName) {
+    return `# Project Agent — ${projectName}
+
+你是课题「${projectName}」的研究 agent。
+
+## 研究方向
+{由 BOOTSTRAP 流程填写}
+
+## 核心域
+关键词: {由 BOOTSTRAP 流程填写}
+arXiv 分类: {由 BOOTSTRAP 流程填写}
+
+## 监测带
+相邻领域: {由 BOOTSTRAP 流程填写}
+`;
+}
+export function renderAgentsMd() {
+    return `# Agent Operating Manual
+
+## Workspace Layout
+
+本 agent 的工作目录即为项目根目录（\`$W\`）。所有文件相对于 \`$W\` 组织：
+
+\`\`\`
+$W/
+├── SOUL.md                      # 身份 + 研究方向
+├── AGENTS.md                    # 本文档
+├── metabolism/                  # 知识新陈代谢
+│   ├── config.json              # 项目配置（关键词、分类、heartbeat）
+│   ├── knowledge/               # K(t) 持久知识状态
+│   │   ├── _index.md            # 全景索引
+│   │   └── topic-*.md           # 主题文件（上限 50）
+│   ├── diffs/                   # 每日 diff 报告
+│   ├── hypotheses/              # 生成的假设
+│   └── log/                     # 运行日志
+├── survey/                      # /research-collect outputs
+│   ├── search_terms.json
+│   └── report.md
+├── papers/                      # 下载的论文
+│   ├── _downloads/              # 原始下载
+│   ├── _meta/                   # 元数据 {arxiv_id}.json
+│   └── {direction}/             # 按方向分类
+├── repos/                       # 参考代码仓库
+├── notes/                       # /research-survey: 逐篇深度笔记
+│   └── paper_{arxiv_id}.md
+├── ideas/                       # /idea-generation outputs
+├── review/                      # /write-review-paper outputs
+├── survey_res.md                # /research-survey: 方法对比报告
+├── plan_res.md                  # /research-plan: 实现计划
+├── project/                     # /research-implement: 代码实现
+├── ml_res.md                    # /research-implement: 执行报告
+├── iterations/                  # /research-review: 审查迭代
+│   └── judge_v*.md
+├── experiment_res.md            # /research-experiment: 实验报告
+└── skills/                      # workspace skills (metabolism 等)
+\`\`\`
+
+## Session Context
+
+你可能在不同类型的 session 中被唤醒：
+- **Main session**：与人类直接对话，可触发 research-pipeline 等编排 skill
+- **Cron session**：定时触发，执行周期性任务（如每日 metabolism）
+- **Spawn session**：被 main session 调度（sessions_spawn），执行一次性重任务
+
+任务指令会在 session 启动时注入，按指令执行即可。
+
+## Conventions
+
+### File Existence = Step Completion
+检查产出文件是否存在再执行。已存在则跳过。支持崩溃恢复和增量推进。
+
+### Immutability
+产出文件一旦写入不修改，除非用户明确要求。例外：\`project/\` 在 implement-review 迭代中可变。
+
+### Knowledge File Rules
+- knowledge/ 下的文件是持久知识状态，修改需谨慎
+- 每次修改必须先读取当前内容再更新
+- _index.md 是全景索引，必须与 topic 文件保持同步
+- topic 文件数上限 50，低活跃主题应合并归档
+
+## Research Rigor
+
+- 先读原文，再思考，最后作答
+- 不捏造引用或实验结果，每个断言需有来源
+- 不确定时说「不确定」而非猜测
+- 读论文全文（.tex），不能只读 abstract
+- 想法必须扎根于真实论文
+
+## Skill Outputs Summary
+
+| Skill | Primary Outputs |
+|-------|-----------------|
+| /research-collect | survey/, papers/ |
+| /research-survey | notes/paper_*.md, survey_res.md |
+| /research-plan | plan_res.md |
+| /research-implement | project/, ml_res.md |
+| /research-review | iterations/judge_v*.md |
+| /research-experiment | experiment_res.md |
+| /idea-generation | ideas/ |
+| /write-review-paper | review/ |
+`;
+}
+//# sourceMappingURL=bootstrap.js.map

package/dist/src/templates/bootstrap.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"bootstrap.js","sourceRoot":"","sources":["../../../src/templates/bootstrap.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,MAAM,UAAU,iBAAiB,CAAC,WAAmB;IACnD,OAAO;;YAEG,WAAW;;;;kBAIL,WAAW;;;;;;;;;;;;;;;;;kBAiBX,WAAW;;;;;;;;;;;;;;;yBAeJ,WAAW;;kBAElB,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;;;CAGzC,CAAC;AACF,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,WAAmB;IAC9C,OAAO,qBAAqB,WAAW;;OAElC,WAAW;;;;;;;;;;;CAWjB,CAAC;AACF,CAAC;AAED,MAAM,UAAU,cAAc;IAC5B,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAmFR,CAAC;AACF,CAAC"}

package/dist/src/tools/arxiv-download.d.ts

@@ -1,6 +1,6 @@
 export declare const ArxivDownloadSchema: import("@sinclair/typebox").TObject<{
     arxiv_ids: import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>;
-    output_dir: import("@sinclair/typebox").TString;
+    output_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
 }>;
 /**
  * arxiv_download: Download papers by arxiv_id. Requires explicit output_dir.
@@ -11,7 +11,7 @@ export declare function createArxivDownloadTool(): {
     description: string;
     parameters: import("@sinclair/typebox").TObject<{
         arxiv_ids: import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>;
-        output_dir: import("@sinclair/typebox").TString;
+        output_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
     }>;
     execute: (_toolCallId: string, rawArgs: unknown) => Promise<{
         type: "tool_result";

package/dist/src/tools/arxiv-download.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"arxiv-download.d.ts","sourceRoot":"","sources":["../../../src/tools/arxiv-download.ts"],"names":[],"mappings":"AAYA,eAAO,MAAM,mBAAmB;;;EAO9B,CAAC;AAoIH;;GAEG;AACH,wBAAgB,uBAAuB;;;;;;;;2BAMN,MAAM,WAAW,OAAO;;;;;;;;EA0DxD"}

package/dist/src/tools/arxiv-download.js

@@ -11,9 +11,9 @@ export const ArxivDownloadSchema = Type.Object({
     arxiv_ids: Type.Array(Type.String(), {
         description: "List of arXiv IDs to download (e.g. ['2401.12345', '2312.00001']).",
     }),
-    output_dir: Type.String({
-        description: "Directory to save files. MUST be an absolute path.",
-    }),
+    output_dir: Type.Optional(Type.String({
+        description: "Directory to save files. Defaults to 'papers/' relative to cwd. Can be relative or absolute.",
+    })),
 });
 function readStringParam(params, key, opts) {
     const value = params[key];
@@ -131,19 +131,17 @@ export function createArxivDownloadTool() {
     return {
         label: "ArXiv Download",
         name: "arxiv_download",
-        description: "Download arXiv papers by ID. Downloads .tex source (with PDF fallback). Requires explicit output_dir (absolute path).",
+        description: "Download arXiv papers by ID. Downloads .tex source (with PDF fallback). output_dir defaults to 'papers/' if omitted.",
         parameters: ArxivDownloadSchema,
         execute: async (_toolCallId, rawArgs) => {
             const params = rawArgs;
             const arxivIds = readArrayParam(params, "arxiv_ids");
-            const outputDir = readStringParam(params, "output_dir", { required: true });
+            const outputDir = readStringParam(params, "output_dir") ?? "papers";
             if (arxivIds.length === 0) {
                 return Result.err("invalid_params", "arxiv_ids must be a non-empty array");
             }
-            if (!path.isAbsolute(outputDir)) {
-                return Result.err("invalid_params", `output_dir must be an absolute path, got: ${outputDir}`);
-            }
-            await fs.promises.mkdir(outputDir, { recursive: true });
+            const resolvedOutputDir = path.resolve(outputDir);
+            await fs.promises.mkdir(resolvedOutputDir, { recursive: true });
             const logger = { debug: (msg) => console.log(`[arxiv-download] ${msg}`) };
             const downloads = [];
             for (let i = 0; i < arxivIds.length; i++) {
@@ -153,7 +151,7 @@ export function createArxivDownloadTool() {
                     await delay(RATE_LIMIT_MS);
                 }
                 // Always try .tex first, fallback to PDF automatically
-                const result = await downloadTexSource(arxivId, outputDir, logger);
+                const result = await downloadTexSource(arxivId, resolvedOutputDir, logger);
                 downloads.push({
                     arxiv_id: arxivId,
                     success: result.success,
@@ -167,7 +165,7 @@ export function createArxivDownloadTool() {
             const successful = downloads.filter((d) => d.success).length;
             const failed = downloads.filter((d) => !d.success).length;
             return Result.ok({
-                output_dir: outputDir,
+                output_dir: resolvedOutputDir,
                 total: arxivIds.length,
                 successful,
                 failed,

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package/dist/src/tools/scientify-cron.d.ts

@@ -19,6 +19,7 @@ export declare const ScientifyCronToolSchema: import("@sinclair/typebox").TObjec
     channel: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
     to: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
     no_deliver: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
+    run_now: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
     job_id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
 }>;
 type CronToolDeps = {
@@ -49,6 +50,7 @@ export declare function createScientifyCronTool(deps: CronToolDeps): {
         channel: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
         to: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
         no_deliver: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
+        run_now: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TBoolean>;
         job_id: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
     }>;
     execute: (_toolCallId: string, rawArgs: unknown) => Promise<{

package/dist/src/tools/scientify-cron.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"scientify-cron.d.ts","sourceRoot":"","sources":["../../../src/tools/scientify-cron.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAA6C,YAAY,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AASvG,eAAO,MAAM,uBAAuB;;;;;;;;;;;;;;;;;;;;;EAmFlC,CAAC;AAEH,KAAK,YAAY,GAAG;IAClB,OAAO,EAAE,aAAa,CAAC;IACvB,MAAM,EAAE,YAAY,CAAC;CACtB,CAAC;AAgLF,wBAAgB,uBAAuB,CAAC,IAAI,EAAE,YAAY;;;;;;;;;;;;;;;;;;;;;;;;;;2BAWzB,MAAM,WAAW,OAAO;;;;;;;;EAwDxD"}
+{"version":3,"file":"scientify-cron.d.ts","sourceRoot":"","sources":["../../../src/tools/scientify-cron.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAA6C,YAAY,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AASvG,eAAO,MAAM,uBAAuB;;;;;;;;;;;;;;;;;;;;;;EAyFlC,CAAC;AAEH,KAAK,YAAY,GAAG;IAClB,OAAO,EAAE,aAAa,CAAC;IACvB,MAAM,EAAE,YAAY,CAAC;CACtB,CAAC;AAwLF,wBAAgB,uBAAuB,CAAC,IAAI,EAAE,YAAY;;;;;;;;;;;;;;;;;;;;;;;;;;;2BAWzB,MAAM,WAAW,OAAO;;;;;;;;EAuFxD"}

package/dist/src/tools/scientify-cron.js

@@ -48,6 +48,9 @@ export const ScientifyCronToolSchema = Type.Object({
     no_deliver: Type.Optional(Type.Boolean({
         description: "If true, run in background without push delivery.",
     })),
+    run_now: Type.Optional(Type.Boolean({
+        description: "If true (upsert only), trigger one immediate run after job creation/update and return the run result handle.",
+    })),
     job_id: Type.Optional(Type.String({
         description: "Specific job id to remove (only used when action=remove).",
     })),
@@ -103,6 +106,15 @@ function normalizeScope(raw) {
         .replace(/^-|-$/g, "");
     return base || "global";
 }
+function parseJobIdFromResultText(text) {
+    const fenced = text.match(/Job ID:\s*`([^`]+)`/i);
+    if (fenced?.[1])
+        return fenced[1].trim();
+    const plain = text.match(/Job ID:\s*([a-z0-9-]{8,})/i);
+    if (plain?.[1])
+        return plain[1].trim();
+    return undefined;
+}
 function buildToolContext(scope, args, commandBody) {
     return {
         senderId: `tool_${scope}`,
@@ -225,7 +237,27 @@ export function createScientifyCronTool(deps) {
                         return Result.err("operation_failed", err);
                     }
                     const text = getResultText(res);
-                    return Result.ok({ action, scope, result: text });
+                    const jobId = parseJobIdFromResultText(text);
+                    const runNow = readBooleanParam(params, "run_now");
+                    if (runNow && jobId) {
+                        let runRes = await deps.runtime.system.runCommandWithTimeout(["openclaw", "cron", "run", jobId, "--json"], { timeoutMs: 120_000 });
+                        if (runRes.code !== 0 &&
+                            /unknown option '--json'|unknown option \"--json\"|unknown option\s+--json/i.test(runRes.stderr || "")) {
+                            runRes = await deps.runtime.system.runCommandWithTimeout(["openclaw", "cron", "run", jobId], { timeoutMs: 120_000 });
+                        }
+                        if (runRes.code !== 0) {
+                            return Result.err("operation_failed", runRes.stderr || `cron run failed for job ${jobId}`);
+                        }
+                        return Result.ok({
+                            action,
+                            scope,
+                            job_id: jobId,
+                            run_now: true,
+                            run_result: runRes.stdout.trim(),
+                            result: text,
+                        });
+                    }
+                    return Result.ok({ action, scope, ...(jobId ? { job_id: jobId } : {}), result: text });
                 }
                 if (action === "list") {
                     const ctx = buildToolContext(scope, "", "/research-subscriptions");