scientify 1.10.2 → 1.11.0

package/dist/src/knowledge-state/store.js.map

@@ -0,0 +1 @@
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package/dist/src/knowledge-state/types.d.ts

@@ -0,0 +1,182 @@
+export type KnowledgeChangeType = "NEW" | "CONFIRM" | "REVISE" | "BRIDGE";
+export type PaperEvidenceAnchorInput = {
+    section?: string;
+    locator?: string;
+    claim: string;
+    quote?: string;
+};
+export type KnowledgePaperInput = {
+    id?: string;
+    title?: string;
+    url?: string;
+    source?: string;
+    publishedAt?: string;
+    score?: number;
+    reason?: string;
+    summary?: string;
+    evidenceIds?: string[];
+    fullTextRead?: boolean;
+    readStatus?: "fulltext" | "partial" | "metadata" | "unread";
+    fullTextSource?: string;
+    fullTextRef?: string;
+    unreadReason?: string;
+    keyEvidenceSpans?: string[];
+    domain?: string;
+    subdomains?: string[];
+    crossDomainLinks?: string[];
+    researchGoal?: string;
+    approach?: string;
+    methodologyDesign?: string;
+    keyContributions?: string[];
+    practicalInsights?: string[];
+    mustUnderstandPoints?: string[];
+    limitations?: string[];
+    evidenceAnchors?: PaperEvidenceAnchorInput[];
+};
+export type ExplorationTraceInput = {
+    query: string;
+    reason?: string;
+    source?: string;
+    candidates?: number;
+    filteredTo?: number;
+    filteredOutReasons?: string[];
+    resultCount?: number;
+};
+export type KnowledgeChangeInput = {
+    type: KnowledgeChangeType;
+    statement: string;
+    evidenceIds?: string[];
+    topic?: string;
+};
+export type KnowledgeUpdateInput = {
+    topic: string;
+    op: "append" | "revise" | "confirm" | "bridge";
+    content: string;
+    confidence?: "low" | "medium" | "high";
+    evidenceIds?: string[];
+};
+export type KnowledgeHypothesisInput = {
+    id?: string;
+    statement: string;
+    trigger: "GAP" | "BRIDGE" | "TREND" | "CONTRADICTION";
+    dependencyPath?: string[];
+    novelty?: number;
+    feasibility?: number;
+    impact?: number;
+    evidenceIds?: string[];
+    validationStatus?: "unchecked" | "supporting" | "conflicting" | "openreview_related" | "openreview_not_found";
+    validationNotes?: string;
+    validationEvidence?: string[];
+};
+export type KnowledgeRunLogInput = {
+    model?: string;
+    durationMs?: number;
+    error?: string;
+    degraded?: boolean;
+    notes?: string;
+    tempFullTextDir?: string;
+    tempFilesDownloaded?: number;
+    tempCleanupStatus?: "done" | "partial" | "failed" | "not_needed";
+    tempCleanupNote?: string;
+    fullTextAttempted?: number;
+    fullTextCompleted?: number;
+};
+export type KnowledgeStateInput = {
+    corePapers?: KnowledgePaperInput[];
+    explorationPapers?: KnowledgePaperInput[];
+    explorationTrace?: ExplorationTraceInput[];
+    knowledgeChanges?: KnowledgeChangeInput[];
+    knowledgeUpdates?: KnowledgeUpdateInput[];
+    hypotheses?: KnowledgeHypothesisInput[];
+    runLog?: KnowledgeRunLogInput;
+};
+export type RecentHypothesisSummary = {
+    id: string;
+    statement: string;
+    trigger: KnowledgeHypothesisInput["trigger"];
+    createdAtMs: number;
+    file: string;
+};
+export type RecentChangeStat = {
+    day: string;
+    runId: string;
+    newCount: number;
+    confirmCount: number;
+    reviseCount: number;
+    bridgeCount: number;
+};
+export type KnowledgeStateSummary = {
+    projectId: string;
+    streamKey: string;
+    totalRuns: number;
+    totalHypotheses: number;
+    knowledgeTopicsCount: number;
+    paperNotesCount: number;
+    recentFullTextReadCount: number;
+    recentNotFullTextReadCount: number;
+    qualityGate: {
+        passed: boolean;
+        fullTextCoveragePct: number;
+        evidenceBindingRatePct: number;
+        citationErrorRatePct: number;
+        reasons: string[];
+    };
+    unreadCorePaperIds: string[];
+    recentPapers: KnowledgePaperInput[];
+    lastRunAtMs?: number;
+    lastStatus?: string;
+    recentHypotheses: RecentHypothesisSummary[];
+    recentChangeStats: RecentChangeStat[];
+    lastExplorationTrace: ExplorationTraceInput[];
+};
+export type CommitKnowledgeRunInput = {
+    projectId?: string;
+    scope: string;
+    topic: string;
+    topicKey: string;
+    status: string;
+    runId?: string;
+    note?: string;
+    papers?: Array<{
+        id?: string;
+        title?: string;
+        url?: string;
+        score?: number;
+        reason?: string;
+    }>;
+    knowledgeState?: KnowledgeStateInput;
+};
+export type KnowledgeStreamState = {
+    scope: string;
+    topic: string;
+    topicKey: string;
+    projectId: string;
+    totalRuns: number;
+    totalHypotheses: number;
+    knowledgeTopics: string[];
+    paperNotes: string[];
+    recentFullTextReadCount: number;
+    recentNotFullTextReadCount: number;
+    lastQualityGate: {
+        passed: boolean;
+        fullTextCoveragePct: number;
+        evidenceBindingRatePct: number;
+        citationErrorRatePct: number;
+        reasons: string[];
+    };
+    lastUnreadCorePaperIds: string[];
+    recentPapers: KnowledgePaperInput[];
+    lastRunAtMs?: number;
+    lastStatus?: string;
+    recentRunIds: string[];
+    recentHypothesisIds: string[];
+    recentHypotheses: RecentHypothesisSummary[];
+    recentChangeStats: RecentChangeStat[];
+    lastExplorationTrace: ExplorationTraceInput[];
+};
+export type KnowledgeStateRoot = {
+    version: 1;
+    updatedAtMs: number;
+    streams: Record<string, KnowledgeStreamState>;
+};
+//# sourceMappingURL=types.d.ts.map

package/dist/src/knowledge-state/types.d.ts.map

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package/dist/src/knowledge-state/types.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=types.js.map

package/dist/src/knowledge-state/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/knowledge-state/types.ts"],"names":[],"mappings":""}

package/dist/src/literature/subscription-state.d.ts

@@ -1,3 +1,4 @@
+import type { KnowledgeStateInput, KnowledgeStateSummary } from "../knowledge-state/types.js";
 export type LightweightPreferences = {
     maxPapers: number;
     recencyDays?: number;
@@ -50,6 +51,19 @@ export type RecordResult = {
     recordedPapers: number;
     totalKnownPapers: number;
     pushedAtMs: number;
+    projectId?: string;
+    streamKey?: string;
+    knowledgeStateSummary?: KnowledgeStateSummary;
+};
+export type RecentPaperSummary = {
+    id: string;
+    title?: string;
+    url?: string;
+    lastScore?: number;
+    lastReason?: string;
+    firstPushedAtMs: number;
+    lastPushedAtMs: number;
+    pushCount: number;
 };
 export type FeedbackResult = {
     scope: string;
@@ -73,6 +87,8 @@ export declare function recordIncrementalPush(args: {
     preferences?: Partial<LightweightPreferences>;
     runId?: string;
     note?: string;
+    projectId?: string;
+    knowledgeState?: KnowledgeStateInput;
 }): Promise<RecordResult>;
 export declare function recordUserFeedback(args: {
     scope: string;
@@ -83,8 +99,14 @@ export declare function recordUserFeedback(args: {
 export declare function getIncrementalStateStatus(args: {
     scope: string;
     topic: string;
+    projectId?: string;
 }): Promise<PrepareResult & {
     totalRuns: number;
     lastStatus?: string;
+    recentPapers: RecentPaperSummary[];
+    knowledgeStateSummary?: KnowledgeStateSummary;
+    recentHypotheses: KnowledgeStateSummary["recentHypotheses"];
+    recentChangeStats: KnowledgeStateSummary["recentChangeStats"];
+    lastExplorationTrace: KnowledgeStateSummary["lastExplorationTrace"];
 }>;
 //# sourceMappingURL=subscription-state.d.ts.map

package/dist/src/literature/subscription-state.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"subscription-state.d.ts","sourceRoot":"","sources":["../../../src/literature/subscription-state.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,mBAAmB,EAAE,qBAAqB,EAAE,MAAM,6BAA6B,CAAC;AAE9F,MAAM,MAAM,sBAAsB,GAAG;IACnC,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB,CAAC;AAEF,MAAM,MAAM,cAAc,GAAG,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;AAEtD,MAAM,MAAM,gBAAgB,GAAG;IAC7B,iBAAiB,EAAE,MAAM,EAAE,CAAC;IAC5B,eAAe,EAAE,MAAM,EAAE,CAAC;IAC1B,gBAAgB,EAAE,MAAM,EAAE,CAAC;IAC3B,cAAc,EAAE,MAAM,EAAE,CAAC;IACzB,cAAc,EAAE;QACd,IAAI,EAAE,MAAM,CAAC;QACb,IAAI,EAAE,MAAM,CAAC;QACb,IAAI,EAAE,MAAM,CAAC;KACd,CAAC;IACF,gBAAgB,CAAC,EAAE,MAAM,CAAC;CAC3B,CAAC;AAEF,MAAM,MAAM,gBAAgB,GAAG;IAC7B,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB,CAAC;AAEF,MAAM,MAAM,aAAa,GAAG;IAC1B,MAAM,EAAE,cAAc,CAAC;IACvB,KAAK,CAAC,EAAE,gBAAgB,CAAC;IACzB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB,CAAC;AAEF,MAAM,MAAM,aAAa,GAAG;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,sBAAsB,CAAC;IACpC,WAAW,EAAE,gBAAgB,CAAC;IAC9B,eAAe,EAAE,MAAM,EAAE,CAAC;IAC1B,eAAe,EAAE,MAAM,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,CAAC;CACzB,CAAC;AAEF,MAAM,MAAM,YAAY,GAAG;IACzB,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,sBAAsB,CAAC;IACpC,WAAW,EAAE,gBAAgB,CAAC;IAC9B,cAAc,EAAE,MAAM,CAAC;IACvB,gBAAgB,EAAE,MAAM,CAAC;IACzB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,qBAAqB,CAAC,EAAE,qBAAqB,CAAC;CAC/C,CAAC;AAEF,MAAM,MAAM,kBAAkB,GAAG;IAC/B,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,eAAe,EAAE,MAAM,CAAC;IACxB,cAAc,EAAE,MAAM,CAAC;IACvB,SAAS,EAAE,MAAM,CAAC;CACnB,CAAC;AAEF,MAAM,MAAM,cAAc,GAAG;IAC3B,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,cAAc,CAAC;IACvB,WAAW,EAAE,sBAAsB,CAAC;IACpC,WAAW,EAAE,gBAAgB,CAAC;IAC9B,WAAW,EAAE,MAAM,CAAC;CACrB,CAAC;AA+iBF,wBAAsB,uBAAuB,CAAC,IAAI,EAAE;IAClD,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,CAAC,EAAE,OAAO,CAAC,sBAAsB,CAAC,CAAC;CAC/C,GAAG,OAAO,CAAC,aAAa,CAAC,CAqBzB;AAED,wBAAsB,qBAAqB,CAAC,IAAI,EAAE;IAChD,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,gBAAgB,EAAE,CAAC;IAC3B,WAAW,CAAC,EAAE,OAAO,CAAC,sBAAsB,CAAC,CAAC;IAC9C,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,cAAc,CAAC,EAAE,mBAAmB,CAAC;CACtC,GAAG,OAAO,CAAC,YAAY,CAAC,CA4FxB;AAED,wBAAsB,kBAAkB,CAAC,IAAI,EAAE;IAC7C,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,aAAa,CAAC;IACxB,WAAW,CAAC,EAAE,OAAO,CAAC,sBAAsB,CAAC,CAAC;CAC/C,GAAG,OAAO,CAAC,cAAc,CAAC,CA2E1B;AAED,wBAAsB,yBAAyB,CAAC,IAAI,EAAE;IACpD,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB,GAAG,OAAO,CACT,aAAa,GAAG;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,kBAAkB,EAAE,CAAC;IACnC,qBAAqB,CAAC,EAAE,qBAAqB,CAAC;IAC9C,gBAAgB,EAAE,qBAAqB,CAAC,kBAAkB,CAAC,CAAC;IAC5D,iBAAiB,EAAE,qBAAqB,CAAC,mBAAmB,CAAC,CAAC;IAC9D,oBAAoB,EAAE,qBAAqB,CAAC,sBAAsB,CAAC,CAAC;CACrE,CACF,CAqCA"}

package/dist/src/literature/subscription-state.js

@@ -2,8 +2,9 @@ import { createHash } from "node:crypto";
 import { mkdir, readFile, rename, writeFile, appendFile } from "node:fs/promises";
 import { existsSync } from "node:fs";
 import path from "node:path";
+import { commitKnowledgeRun, readKnowledgeSummary } from "../knowledge-state/store.js";
 const STATE_VERSION = 1;
-const DEFAULT_MAX_PAPERS = 3;
+const DEFAULT_MAX_PAPERS = 5;
 const DEFAULT_SOURCES = ["openalex", "arxiv"];
 const MAX_MEMORY_NOTES = 30;
 const MAX_MEMORY_KEYS = 60;
@@ -29,9 +30,25 @@ function normalizeText(raw) {
 function normalizeTopic(raw) {
     return normalizeText(raw).toLowerCase();
 }
+function sanitizeScopePart(raw) {
+    const normalized = normalizeText(raw).toLowerCase();
+    const cleaned = normalized
+        .replace(/[^a-z0-9_-]+/g, "-")
+        .replace(/-+/g, "-")
+        .replace(/^-|-$/g, "");
+    return cleaned || "unknown";
+}
 function normalizeScope(raw) {
     const trimmed = normalizeText(raw).toLowerCase();
-    return trimmed.length > 0 ? trimmed : "global";
+    if (trimmed.length === 0)
+        return "global";
+    const split = trimmed.split(":");
+    if (split.length === 1) {
+        return sanitizeScopePart(split[0]);
+    }
+    const channel = sanitizeScopePart(split[0]);
+    const target = sanitizeScopePart(split.slice(1).join(":"));
+    return `${channel}:${target}`;
 }
 function topicKey(scope, topic) {
     const hash = createHash("sha1")
@@ -300,10 +317,28 @@ function getOrCreateTopicState(root, scope, topic, incomingPrefs) {
     const normalizedScope = normalizeScope(scope);
     const normalizedTopicDisplay = normalizeText(topic);
     const key = topicKey(normalizedScope, normalizedTopicDisplay);
-    const existing = root.topics[key];
+    const expectedNormalizedTopic = normalizeTopic(normalizedTopicDisplay);
+    let existing = root.topics[key];
+    if (!existing) {
+        for (const [legacyKey, candidate] of Object.entries(root.topics)) {
+            if (!candidate || typeof candidate !== "object")
+                continue;
+            if (normalizeScope(candidate.scope) !== normalizedScope)
+                continue;
+            if (normalizeTopic(candidate.topic) !== expectedNormalizedTopic)
+                continue;
+            existing = candidate;
+            if (legacyKey !== key) {
+                delete root.topics[legacyKey];
+                root.topics[key] = candidate;
+            }
+            break;
+        }
+    }
     if (existing) {
         existing.scope = normalizedScope;
         existing.topic = normalizedTopicDisplay;
+        existing.topicKey = key;
         ensureTopicMemoryState(existing);
         if (!existing.pushedPapers || typeof existing.pushedPapers !== "object") {
             existing.pushedPapers = {};
@@ -312,6 +347,95 @@ function getOrCreateTopicState(root, scope, topic, incomingPrefs) {
             existing.totalRuns = 0;
         }
         existing.preferences = mergePreferences(existing.preferences, incomingPrefs);
+        // Merge duplicate legacy buckets produced by old scope normalization rules.
+        for (const [otherKey, other] of Object.entries(root.topics)) {
+            if (otherKey === key)
+                continue;
+            if (!other || typeof other !== "object")
+                continue;
+            if (normalizeScope(other.scope) !== normalizedScope)
+                continue;
+            if (normalizeTopic(other.topic) !== expectedNormalizedTopic)
+                continue;
+            ensureTopicMemoryState(other);
+            existing.preferences = mergePreferences(existing.preferences, other.preferences);
+            const existingMemory = ensureTopicMemoryState(existing);
+            const otherMemory = ensureTopicMemoryState(other);
+            existingMemory.feedbackCounts.read += otherMemory.feedbackCounts.read;
+            existingMemory.feedbackCounts.skip += otherMemory.feedbackCounts.skip;
+            existingMemory.feedbackCounts.star += otherMemory.feedbackCounts.star;
+            for (const [k, v] of Object.entries(otherMemory.keywordScores)) {
+                if (!Number.isFinite(v))
+                    continue;
+                updateScoreMap(existingMemory.keywordScores, k, v);
+            }
+            for (const [k, v] of Object.entries(otherMemory.sourceScores)) {
+                if (!Number.isFinite(v))
+                    continue;
+                updateScoreMap(existingMemory.sourceScores, k, v);
+            }
+            existingMemory.keywordScores = limitScoreMap(existingMemory.keywordScores);
+            existingMemory.sourceScores = limitScoreMap(existingMemory.sourceScores);
+            const mergedNotes = [...existingMemory.recentNotes, ...otherMemory.recentNotes]
+                .filter((item) => Number.isFinite(item.ts) && item.text.length > 0)
+                .sort((a, b) => a.ts - b.ts)
+                .slice(-MAX_MEMORY_NOTES);
+            existingMemory.recentNotes = mergedNotes;
+            const existingFb = existingMemory.lastFeedbackAtMs ?? 0;
+            const otherFb = otherMemory.lastFeedbackAtMs ?? 0;
+            if (otherFb > existingFb) {
+                existingMemory.lastFeedbackAtMs = otherFb;
+            }
+            for (const [paperId, paper] of Object.entries(other.pushedPapers ?? {})) {
+                const current = existing.pushedPapers[paperId];
+                if (!current) {
+                    existing.pushedPapers[paperId] = { ...paper };
+                    continue;
+                }
+                current.firstPushedAtMs = Math.min(current.firstPushedAtMs, paper.firstPushedAtMs);
+                const paperPushCount = Number.isFinite(paper.pushCount) ? Math.max(0, Math.floor(paper.pushCount)) : 0;
+                current.pushCount += paperPushCount;
+                if (paper.lastPushedAtMs > current.lastPushedAtMs) {
+                    current.lastPushedAtMs = paper.lastPushedAtMs;
+                    if (paper.title)
+                        current.title = paper.title;
+                    if (paper.url)
+                        current.url = paper.url;
+                    if (typeof paper.lastScore === "number" && Number.isFinite(paper.lastScore)) {
+                        current.lastScore = paper.lastScore;
+                    }
+                    if (paper.lastReason)
+                        current.lastReason = paper.lastReason;
+                }
+                else {
+                    if (!current.title && paper.title)
+                        current.title = paper.title;
+                    if (!current.url && paper.url)
+                        current.url = paper.url;
+                    if (current.lastScore === undefined && typeof paper.lastScore === "number" && Number.isFinite(paper.lastScore)) {
+                        current.lastScore = paper.lastScore;
+                    }
+                    if (!current.lastReason && paper.lastReason)
+                        current.lastReason = paper.lastReason;
+                }
+            }
+            const existingRuns = Number.isFinite(existing.totalRuns) ? Math.max(0, Math.floor(existing.totalRuns)) : 0;
+            const otherRuns = Number.isFinite(other.totalRuns) ? Math.max(0, Math.floor(other.totalRuns)) : 0;
+            existing.totalRuns = existingRuns + otherRuns;
+            const existingLastRun = existing.lastRunAtMs ?? 0;
+            const otherLastRun = other.lastRunAtMs ?? 0;
+            if (otherLastRun > existingLastRun) {
+                existing.lastRunAtMs = other.lastRunAtMs;
+                existing.lastStatus = other.lastStatus;
+                if (other.lastProjectId) {
+                    existing.lastProjectId = other.lastProjectId;
+                }
+            }
+            else if (!existing.lastStatus && other.lastStatus) {
+                existing.lastStatus = other.lastStatus;
+            }
+            delete root.topics[otherKey];
+        }
         return existing;
     }
     const created = {
@@ -331,6 +455,24 @@ function sortPaperIdsByRecency(papers) {
         .sort((a, b) => b.lastPushedAtMs - a.lastPushedAtMs)
         .map((item) => item.id);
 }
+function recentPapersByRecency(papers, limit) {
+    const normalizedLimit = Math.max(1, Math.min(50, Math.floor(limit)));
+    return Object.values(papers)
+        .sort((a, b) => b.lastPushedAtMs - a.lastPushedAtMs)
+        .slice(0, normalizedLimit)
+        .map((item) => ({
+        id: item.id,
+        ...(item.title ? { title: item.title } : {}),
+        ...(item.url ? { url: item.url } : {}),
+        ...(typeof item.lastScore === "number" && Number.isFinite(item.lastScore)
+            ? { lastScore: item.lastScore }
+            : {}),
+        ...(item.lastReason ? { lastReason: item.lastReason } : {}),
+        firstPushedAtMs: item.firstPushedAtMs,
+        lastPushedAtMs: item.lastPushedAtMs,
+        pushCount: item.pushCount,
+    }));
+}
 async function appendPushLog(entry) {
     await ensureStateDir();
     await appendFile(getPushLogPath(), `${JSON.stringify(entry)}\n`, "utf-8");
@@ -397,6 +539,19 @@ export async function recordIncrementalPush(args) {
     topicState.totalRuns += 1;
     topicState.lastRunAtMs = now;
     topicState.lastStatus = args.status?.trim() || (recordedPapers > 0 ? "ok" : "empty");
+    const knowledgeCommitted = await commitKnowledgeRun({
+        projectId: args.projectId ?? topicState.lastProjectId,
+        scope: topicState.scope,
+        topic: topicState.topic,
+        topicKey: topicState.topicKey,
+        status: topicState.lastStatus,
+        runId: args.runId,
+        note: args.note,
+        papers: args.papers,
+        knowledgeState: args.knowledgeState,
+    });
+    topicState.lastStatus = knowledgeCommitted.summary.lastStatus ?? topicState.lastStatus;
+    topicState.lastProjectId = knowledgeCommitted.projectId;
     await saveState(root);
     await appendPushLog({
         ts: now,
@@ -404,7 +559,9 @@ export async function recordIncrementalPush(args) {
         topic: topicState.topic,
         topicKey: topicState.topicKey,
         status: topicState.lastStatus,
-        runId: args.runId,
+        runId: knowledgeCommitted.runId,
+        projectId: knowledgeCommitted.projectId,
+        streamKey: knowledgeCommitted.streamKey,
         preferences: topicState.preferences,
         recordedPapers,
         papers: args.papers.map((paper) => ({
@@ -415,6 +572,7 @@ export async function recordIncrementalPush(args) {
             ...(paper.reason ? { reason: paper.reason.trim() } : {}),
         })),
         note: args.note,
+        knowledgeStateSummary: knowledgeCommitted.summary,
     });
     return {
         scope: topicState.scope,
@@ -425,6 +583,9 @@ export async function recordIncrementalPush(args) {
         recordedPapers,
         totalKnownPapers: Object.keys(topicState.pushedPapers).length,
         pushedAtMs: now,
+        projectId: knowledgeCommitted.projectId,
+        streamKey: knowledgeCommitted.streamKey,
+        knowledgeStateSummary: knowledgeCommitted.summary,
     };
 }
 export async function recordUserFeedback(args) {
@@ -500,6 +661,15 @@ export async function getIncrementalStateStatus(args) {
     const root = await loadState();
     const topicState = getOrCreateTopicState(root, args.scope, args.topic);
     const memory = ensureTopicMemoryState(topicState);
+    const knowledgeSummaryResult = await readKnowledgeSummary({
+        scope: topicState.scope,
+        topic: topicState.topic,
+        topicKey: topicState.topicKey,
+        projectId: args.projectId ?? topicState.lastProjectId,
+    });
+    if (knowledgeSummaryResult?.projectId) {
+        topicState.lastProjectId = knowledgeSummaryResult.projectId;
+    }
     await saveState(root);
     const excludePaperIds = sortPaperIdsByRecency(topicState.pushedPapers);
     const lastPushedAtMs = excludePaperIds.length
@@ -516,6 +686,11 @@ export async function getIncrementalStateStatus(args) {
         ...(lastPushedAtMs ? { lastPushedAtMs } : {}),
         totalRuns: topicState.totalRuns,
         ...(topicState.lastStatus ? { lastStatus: topicState.lastStatus } : {}),
+        recentPapers: recentPapersByRecency(topicState.pushedPapers, 10),
+        ...(knowledgeSummaryResult ? { knowledgeStateSummary: knowledgeSummaryResult.summary } : {}),
+        recentHypotheses: knowledgeSummaryResult?.summary.recentHypotheses ?? [],
+        recentChangeStats: knowledgeSummaryResult?.summary.recentChangeStats ?? [],
+        lastExplorationTrace: knowledgeSummaryResult?.summary.lastExplorationTrace ?? [],
     };
 }
 //# sourceMappingURL=subscription-state.js.map