schematex 0.3.4 → 0.4.0

package/dist/chunk-CQP5YHVK.cjs.map

@@ -1 +0,0 @@
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 break;\n      case \"mode\":\n        if ([\"phylogram\", \"cladogram\", \"chronogram\"].includes(val)) {\n          result.mode = val as PhyloMode;\n        }\n        break;\n      case \"branch-width\":\n        result.branchWidth = Number(val);\n        break;\n      case \"openAngle\":\n        result.openAngle = Number(val);\n        break;\n      case \"mrsd\":\n        result.mrsd = val;\n        break;\n    }\n  }\n\n  if (result.layout === \"unrooted\") {\n    result.unrooted = true;\n  }\n\n  return result;\n}\n\nfunction parseCladeLine(line: string): CladeDef | null {\n  // clade ID = (member1, member2, ...) [color: \"#hex\", label: \"text\", highlight: mode]\n  const match = line.match(\n    /^clade\\s+(\\S+)\\s*=\\s*\\(([^)]+)\\)\\s*(?:\\[([^\\]]*)\\])?\\s*$/\n  );\n  if (!match) return null;\n\n  const id = match[1];\n  const members = match[2].split(\",\").map((s) => s.trim()).filter(Boolean);\n  const propsStr = match[3] ?? \"\";\n\n  let color: string | undefined;\n  let label: string | undefined;\n  let highlight: CladeHighlightMode | undefined;\n\n  if (propsStr) {\n    const colorMatch = propsStr.match(/color:\\s*\"([^\"]+)\"/);\n    if (colorMatch) color = colorMatch[1];\n    const labelMatch = propsStr.match(/label:\\s*\"([^\"]+)\"/);\n    if (labelMatch) label = labelMatch[1];\n    const hlMatch = propsStr.match(/highlight:\\s*(\\w+)/);\n    if (hlMatch && [\"branch\", \"background\", \"both\"].includes(hlMatch[1])) {\n      highlight = hlMatch[1] as CladeHighlightMode;\n    }\n  }\n\n  return { id, members, color, label, highlight };\n}\n\nexport function parsePhylo(text: string): PhyloTreeAST {\n  const lines = text.split(\"\\n\");\n  let lineIdx = 0;\n\n  // Skip empty lines\n  while (lineIdx < lines.length && !lines[lineIdx].trim()) lineIdx++;\n\n  // Parse header: phylo \"title\" [props]\n  const headerLine = lines[lineIdx]?.trim() ?? \"\";\n  if (!headerLine.toLowerCase().startsWith(\"phylo\")) {\n    throw new PhyloParseError(\"Phylo document must start with 'phylo'\");\n  }\n  lineIdx++;\n\n  let title: string | undefined;\n  const titleMatch = headerLine.match(/\"([^\"]+)\"/);\n  if (titleMatch) title = titleMatch[1];\n\n  let headerProps: ReturnType<typeof parseHeaderProps> = {\n    layout: \"rectangular\",\n    mode: \"phylogram\",\n    unrooted: false,\n  };\n  const propsMatch = headerLine.match(/\\[([^\\]]+)\\]/);\n  if (propsMatch) {\n    headerProps = parseHeaderProps(propsMatch[1]);\n  }\n\n  // Parse body: newick, indent tree, scale, outgroup, clade definitions\n  let root: PhyloNode | null = null;\n  let scaleLabel: string | undefined;\n  let outgroup: string | undefined;\n  const clades: CladeDef[] = [];\n  const indentLines: string[] = [];\n  let inIndentTree = false;\n\n  while (lineIdx < lines.length) {\n    const raw = lines[lineIdx];\n    const trimmed = raw.trim();\n    lineIdx++;\n\n    if (!trimmed || trimmed.startsWith(\"#\")) continue;\n\n    // Newick definition\n    if (trimmed.startsWith(\"newick:\")) {\n      const newickStr = trimmed.slice(7).trim().replace(/^[\"']|[\"']$/g, \"\");\n      root = parseNewick(newickStr);\n      inIndentTree = false;\n      continue;\n    }\n\n    // Scale definition\n    if (trimmed.startsWith(\"scale\")) {\n      const scaleMatch = trimmed.match(/scale\\s+\"([^\"]+)\"/);\n      if (scaleMatch) {\n        scaleLabel = scaleMatch[1];\n      } else {\n        scaleLabel = trimmed.slice(5).trim().replace(/^[\"']|[\"']$/g, \"\") || \"substitutions/site\";\n      }\n      continue;\n    }\n\n    // Outgroup\n    if (trimmed.startsWith(\"outgroup:\")) {\n      outgroup = trimmed.slice(9).trim();\n      continue;\n    }\n\n    // Clade definition\n    if (trimmed.startsWith(\"clade \")) {\n      const clade = parseCladeLine(trimmed);\n      if (clade) clades.push(clade);\n      continue;\n    }\n\n    // Style line (alternative props)\n    if (trimmed.startsWith(\"style\")) {\n      const styleProps = trimmed.match(/\\[([^\\]]+)\\]/);\n      if (styleProps) {\n        headerProps = { ...headerProps, ...parseHeaderProps(styleProps[1]) };\n      }\n      continue;\n    }\n\n    // Indent tree definition\n    if (trimmed.endsWith(\":\") && (trimmed === \"root:\" || !trimmed.includes(\" \"))) {\n      inIndentTree = true;\n      indentLines.push(raw);\n      continue;\n    }\n\n    if (inIndentTree) {\n      indentLines.push(raw);\n      continue;\n    }\n  }\n\n  // Parse indent tree if present and no Newick was found\n  if (!root && indentLines.length > 0) {\n    root = parseIndentTree(indentLines);\n  }\n\n  if (!root) {\n    throw new PhyloParseError(\"No tree definition found (newick: or indent tree)\");\n  }\n\n  return {\n    type: \"phylo\",\n    title,\n    root,\n    unrooted: headerProps.unrooted,\n    layout: headerProps.layout,\n    mode: headerProps.mode,\n    clades,\n    scaleLabel,\n    mrsd: headerProps.mrsd,\n    outgroup,\n    metadata: {},\n  };\n}\n","import type {\n  PhyloTreeAST,\n  PhyloNode,\n  PhyloLayoutNode,\n} from \"../../core/types\";\n\nexport interface PhyloLayoutResult {\n  width: number;\n  height: number;\n  nodes: PhyloLayoutNode[];\n  /** Branch paths: { path, cladeId?, isConnector } */\n  branches: PhyloBranch[];\n  ast: PhyloTreeAST;\n  scale: number;\n}\n\nexport interface PhyloBranch {\n  path: string;\n  fromId: string;\n  toId: string;\n  /** Clade id if this branch belongs to a highlighted clade */\n  cladeId?: string;\n  /** Is this a vertical/arc connector (no length meaning) vs horizontal branch */\n  isConnector: boolean;\n}\n\n// ─── Tree Utilities ─────────────────────────────────────────\n\nfunction collectLeaves(node: PhyloNode): PhyloNode[] {\n  if (node.isLeaf) return [node];\n  const leaves: PhyloNode[] = [];\n  for (const child of node.children) {\n    leaves.push(...collectLeaves(child));\n  }\n  return leaves;\n}\n\nfunction maxRootToTip(node: PhyloNode, distSoFar: number): number {\n  if (node.isLeaf) return distSoFar;\n  let maxDist = distSoFar;\n  for (const child of node.children) {\n    const childDist = maxRootToTip(child, distSoFar + (child.branchLength ?? 0));\n    if (childDist > maxDist) maxDist = childDist;\n  }\n  return maxDist;\n}\n\nfunction maxDepth(node: PhyloNode): number {\n  if (node.isLeaf) return 0;\n  let max = 0;\n  for (const child of node.children) {\n    const d = maxDepth(child) + 1;\n    if (d > max) max = d;\n  }\n  return max;\n}\n\nfunction estimateLabelWidth(node: PhyloNode): number {\n  const label = node.label ?? node.id;\n  return label.length * 7.2 + 6;\n}\n\n// ─── Clade Membership ───────────────────────────────────────\n\nfunction buildCladeMap(\n  ast: PhyloTreeAST\n): Map<string, string> {\n  const branchToCladeMap = new Map<string, string>();\n\n  for (const clade of ast.clades) {\n    const memberSet = new Set(clade.members);\n    markCladeBranches(ast.root, memberSet, clade.id, branchToCladeMap);\n  }\n\n  return branchToCladeMap;\n}\n\nfunction markCladeBranches(\n  node: PhyloNode,\n  memberSet: Set<string>,\n  cladeId: string,\n  result: Map<string, string>\n): boolean {\n  if (node.isLeaf) {\n    return memberSet.has(node.id);\n  }\n\n  const childResults: boolean[] = [];\n  for (const child of node.children) {\n    childResults.push(markCladeBranches(child, memberSet, cladeId, result));\n  }\n\n  const allIn = childResults.every(Boolean);\n  const anyIn = childResults.some(Boolean);\n\n  if (allIn && anyIn) {\n    for (const child of node.children) {\n      result.set(child.id, cladeId);\n    }\n    return true;\n  }\n\n  // Partial — mark only children that are fully within\n  for (let i = 0; i < node.children.length; i++) {\n    if (childResults[i]) {\n      result.set(node.children[i].id, cladeId);\n    }\n  }\n\n  return false;\n}\n\n// ─── Rectangular Phylogram Layout ───────────────────────────\n\nconst TIP_SPACING = 20;\nconst PADDING_LEFT = 20;\nconst PADDING_RIGHT = 20;\nconst PADDING_TOP = 20;\nconst PADDING_BOTTOM = 40;\n\nexport function layoutPhylo(ast: PhyloTreeAST): PhyloLayoutResult {\n  const leaves = collectLeaves(ast.root);\n  const numLeaves = leaves.length;\n  const tipSpacing = TIP_SPACING;\n\n  // Compute scale\n  const maxLabelWidth = Math.max(...leaves.map(estimateLabelWidth), 60);\n  const maxDist = maxRootToTip(ast.root, 0);\n  const isCladogram = ast.mode === \"cladogram\";\n\n  const availableWidth = Math.max(300, numLeaves * 30 + maxLabelWidth + 100);\n  const plotWidth = availableWidth - PADDING_LEFT - PADDING_RIGHT - maxLabelWidth;\n\n  let scale: number;\n  if (isCladogram || maxDist === 0) {\n    const depth = maxDepth(ast.root);\n    scale = depth > 0 ? plotWidth / depth : plotWidth;\n  } else {\n    scale = plotWidth / maxDist;\n  }\n\n  // Step 1: assign Y to leaves (in-order)\n  const nodeMap = new Map<string, PhyloLayoutNode>();\n  let leafIdx = 0;\n\n  function assignLeafY(node: PhyloNode): void {\n    if (node.isLeaf) {\n      const y = PADDING_TOP + leafIdx * tipSpacing;\n      nodeMap.set(node.id, { node, x: 0, y });\n      leafIdx++;\n      return;\n    }\n    for (const child of node.children) {\n      assignLeafY(child);\n    }\n  }\n  assignLeafY(ast.root);\n\n  // Step 2: assign Y to internal nodes (mean of children)\n  function assignInternalY(node: PhyloNode): number {\n    const existing = nodeMap.get(node.id);\n    if (node.isLeaf && existing) return existing.y;\n    const childYs = node.children.map(assignInternalY);\n    const y = (Math.min(...childYs) + Math.max(...childYs)) / 2;\n    if (!existing) {\n      nodeMap.set(node.id, { node, x: 0, y });\n    } else {\n      existing.y = y;\n    }\n    return y;\n  }\n  assignInternalY(ast.root);\n\n  // Step 3: assign X (distance from root)\n  function assignX(node: PhyloNode, parentX: number, depth: number): void {\n    let x: number;\n    if (node === ast.root) {\n      x = PADDING_LEFT;\n    } else if (isCladogram) {\n      if (node.isLeaf) {\n        x = PADDING_LEFT + plotWidth;\n      } else {\n        x = PADDING_LEFT + depth * (plotWidth / maxDepth(ast.root));\n      }\n    } else {\n      x = parentX + (node.branchLength ?? 0) * scale;\n    }\n\n    const layoutNode = nodeMap.get(node.id);\n    if (layoutNode) layoutNode.x = x;\n\n    for (const child of node.children) {\n      assignX(child, x, depth + 1);\n    }\n  }\n  assignX(ast.root, PADDING_LEFT, 0);\n\n  // For cladogram: recalculate internal node X as parent of children\n  if (isCladogram) {\n    assignCladogramInternalX(ast.root, nodeMap);\n  }\n\n  // Build clade membership map\n  const cladeMap = buildCladeMap(ast);\n\n  // Step 4: generate branch paths\n  const branches: PhyloBranch[] = [];\n\n  function generateBranches(node: PhyloNode): void {\n    const parentLayout = nodeMap.get(node.id);\n    if (!parentLayout) return;\n\n    if (node.children.length === 0) return;\n\n    const childLayouts = node.children\n      .map((c) => nodeMap.get(c.id))\n      .filter((l): l is PhyloLayoutNode => l !== undefined);\n\n    if (childLayouts.length === 0) return;\n\n    // Vertical connector from min child Y to max child Y at parent X\n    const minY = Math.min(...childLayouts.map((c) => c.y));\n    const maxY = Math.max(...childLayouts.map((c) => c.y));\n\n    if (ast.layout === \"slanted\") {\n      // Slanted: diagonal lines from parent to each child\n      for (const child of node.children) {\n        const childLayout = nodeMap.get(child.id);\n        if (!childLayout) continue;\n        const pathStr = `M ${parentLayout.x},${parentLayout.y} L ${childLayout.x},${childLayout.y}`;\n        branches.push({\n          path: pathStr,\n          fromId: node.id,\n          toId: child.id,\n          cladeId: cladeMap.get(child.id),\n          isConnector: false,\n        });\n      }\n    } else {\n      // Rectangular: vertical connector + horizontal branches\n      branches.push({\n        path: `M ${parentLayout.x},${minY} V ${maxY}`,\n        fromId: node.id,\n        toId: node.id,\n        isConnector: true,\n      });\n\n      for (const child of node.children) {\n        const childLayout = nodeMap.get(child.id);\n        if (!childLayout) continue;\n        const pathStr = `M ${parentLayout.x},${childLayout.y} H ${childLayout.x}`;\n        branches.push({\n          path: pathStr,\n          fromId: node.id,\n          toId: child.id,\n          cladeId: cladeMap.get(child.id),\n          isConnector: false,\n        });\n      }\n    }\n\n    for (const child of node.children) {\n      generateBranches(child);\n    }\n  }\n\n  generateBranches(ast.root);\n\n  // Compute final dimensions\n  const allNodes = Array.from(nodeMap.values());\n  let maxX = Math.max(...allNodes.map((n) => n.x + (n.node.isLeaf ? estimateLabelWidth(n.node) : 0)));\n\n  // Add space for clade labels (background/both mode places labels to the right)\n  let maxCladeLabelWidth = 0;\n  for (const clade of ast.clades) {\n    if (clade.label && clade.highlight && clade.highlight !== \"branch\") {\n      const w = clade.label.length * 8 + 30;\n      if (w > maxCladeLabelWidth) maxCladeLabelWidth = w;\n    }\n  }\n  maxX += maxCladeLabelWidth;\n\n  const maxNodeY = Math.max(...allNodes.map((n) => n.y));\n\n  const width = Math.max(maxX + PADDING_RIGHT, availableWidth);\n  const height = maxNodeY + PADDING_TOP + PADDING_BOTTOM;\n\n  return {\n    width,\n    height,\n    nodes: allNodes,\n    branches,\n    ast,\n    scale,\n  };\n}\n\nfunction assignCladogramInternalX(\n  node: PhyloNode,\n  nodeMap: Map<string, PhyloLayoutNode>\n): number {\n  if (node.isLeaf) {\n    return nodeMap.get(node.id)?.x ?? 0;\n  }\n\n  let minChildX = Infinity;\n  for (const child of node.children) {\n    const childX = assignCladogramInternalX(child, nodeMap);\n    if (childX < minChildX) minChildX = childX;\n  }\n\n  const layout = nodeMap.get(node.id);\n  if (layout) {\n    layout.x = minChildX - 40;\n    if (layout.x < PADDING_LEFT) layout.x = PADDING_LEFT;\n  }\n\n  return layout?.x ?? PADDING_LEFT;\n}\n","import type { PhyloTreeAST } from \"../../core/types\";\nimport type { PhyloLayoutResult } from \"./layout\";\nimport {\n  svgRoot,\n  group,\n  path,\n  line,\n  circle,\n  text,\n  title,\n  desc,\n  rect,\n  el,\n} from \"../../core/svg\";\nimport { cssCustomProperties, resolveBiologyTheme, FONT_SIZE, STROKE_WIDTH, type ResolvedTheme, type BiologyTokens } from \"../../core/theme\";\n\n// ─── Constants ──────────────────────────────────────────────\n\nconst TIP_LABEL_GAP = 6;\nconst SUPPORT_THRESHOLD = 50;\n\nfunction getSupportColor(value: number, t: ResolvedTheme<BiologyTokens>): string {\n  if (value >= 95) return t.supportGood;\n  if (value >= 75) return t.supportMedium;\n  if (value >= 50) return t.supportWarn;\n  return t.supportBad;\n}\n\nfunction isSpeciesBinomial(label: string): boolean {\n  const parts = label.trim().split(/\\s+/);\n  if (parts.length !== 2) return false;\n  return /^[A-Z][a-z]+$/.test(parts[0]) && /^[a-z]+$/.test(parts[1]);\n}\n\n// ─── CSS ────────────────────────────────────────────────────\n\nfunction buildCSS(ast: PhyloTreeAST, t: ResolvedTheme<BiologyTokens>): string {\n  const cladeColors = ast.clades.map((c, i) => {\n    const color = c.color ?? t.cladeColors[i % t.cladeColors.length];\n    return `.schematex-phylo-clade-${c.id} { stroke: ${color}; }\n.schematex-phylo-clade-bg-${c.id} { fill: ${color}; fill-opacity: 0.12; }\n.schematex-phylo-clade-label-${c.id} { fill: ${color}; }`;\n  });\n\n  return `\n.schematex-phylo {${cssCustomProperties(t)}\n  font-family: system-ui, -apple-system, sans-serif;\n}\n.schematex-phylo-branch { fill: none; stroke: ${t.text}; stroke-width: ${STROKE_WIDTH.normal}; stroke-linecap: round; }\n.schematex-phylo-branch-connector { fill: none; stroke: ${t.text}; stroke-width: ${STROKE_WIDTH.normal}; }\n.schematex-phylo-tip-label { font-size: ${FONT_SIZE.label}px; fill: ${t.text}; dominant-baseline: central; }\n.schematex-phylo-tip-label-italic { font-style: italic; }\n.schematex-phylo-support-label { font-size: ${FONT_SIZE.small}px; fill: ${t.textMuted}; text-anchor: middle; dominant-baseline: auto; }\n.schematex-phylo-support-dot { stroke: none; }\n.schematex-phylo-scale-bar line { stroke: ${t.text}; stroke-width: ${STROKE_WIDTH.normal}; }\n.schematex-phylo-scale-bar text { font-size: 10px; fill: ${t.text}; text-anchor: middle; }\n.schematex-phylo-scale-tick { stroke: ${t.text}; stroke-width: ${STROKE_WIDTH.thin}; }\n.schematex-phylo-title { font-size: ${FONT_SIZE.title}px; font-weight: bold; fill: ${t.text}; text-anchor: middle; }\n.schematex-phylo-clade-label { font-size: 13px; font-weight: bold; }\n.schematex-phylo-root-marker { fill: none; stroke: ${t.text}; stroke-width: ${STROKE_WIDTH.normal}; }\n${cladeColors.join(\"\\n\")}\n`.trim();\n}\n\n// ─── Scale Bar ──────────────────────────────────────────────\n\nfunction computeScaleBar(\n  scale: number,\n  plotWidth: number\n): { length: number; label: string; pxLength: number } {\n  if (scale <= 0) return { length: 0.1, label: \"0.1\", pxLength: 50 };\n\n  const targetPx = plotWidth * 0.2;\n\n  const magnitudes = [0.001, 0.002, 0.005, 0.01, 0.02, 0.05, 0.1, 0.2, 0.5, 1, 2, 5, 10, 20, 50, 100];\n  let best = magnitudes[0];\n  let bestDiff = Infinity;\n\n  for (const m of magnitudes) {\n    const diff = Math.abs(m * scale - targetPx);\n    if (diff < bestDiff) {\n      bestDiff = diff;\n      best = m;\n    }\n  }\n\n  return {\n    length: best,\n    label: best < 0.01 ? best.toExponential() : String(best),\n    pxLength: best * scale,\n  };\n}\n\nfunction renderScaleBar(\n  layout: PhyloLayoutResult,\n  t: ResolvedTheme<BiologyTokens>,\n  scaleLabel?: string\n): string {\n  if (layout.ast.mode === \"cladogram\") return \"\";\n\n  const plotWidth = layout.width - 40;\n  const bar = computeScaleBar(layout.scale, plotWidth);\n  if (bar.pxLength < 5) return \"\";\n\n  const x = 20;\n  const y = layout.height - 20;\n\n  const elements = [\n    line({ x1: x, y1: y, x2: x + bar.pxLength, y2: y, class: \"schematex-phylo-scale-bar\" }),\n    line({ x1: x, y1: y - 4, x2: x, y2: y + 4, class: \"schematex-phylo-scale-tick\" }),\n    line({ x1: x + bar.pxLength, y1: y - 4, x2: x + bar.pxLength, y2: y + 4, class: \"schematex-phylo-scale-tick\" }),\n    text({ x: x + bar.pxLength / 2, y: y + 16, \"text-anchor\": \"middle\", class: \"schematex-phylo-scale-bar\" }, bar.label),\n  ];\n\n  if (scaleLabel) {\n    elements.push(\n      text(\n        { x: x + bar.pxLength / 2, y: y + 28, \"text-anchor\": \"middle\", \"font-size\": \"9\", fill: t.textMuted },\n        scaleLabel\n      )\n    );\n  }\n\n  return group({ class: \"schematex-phylo-scale-bar\" }, elements);\n}\n\n// ─── Clade Backgrounds ──────────────────────────────────────\n\nfunction renderCladeBackgrounds(layout: PhyloLayoutResult, t: ResolvedTheme<BiologyTokens>): string[] {\n  const elements: string[] = [];\n\n  for (let ci = 0; ci < layout.ast.clades.length; ci++) {\n    const clade = layout.ast.clades[ci];\n    const hl = clade.highlight ?? \"branch\";\n    if (hl === \"branch\") continue;\n\n    const memberNodes = layout.nodes.filter(\n      (n) => n.node.isLeaf && clade.members.includes(n.node.id)\n    );\n    if (memberNodes.length === 0) continue;\n\n    const minY = Math.min(...memberNodes.map((n) => n.y)) - 10;\n    const maxY = Math.max(...memberNodes.map((n) => n.y)) + 10;\n    const minX = Math.min(...memberNodes.map((n) => n.x)) - 20;\n    const maxX = Math.max(...memberNodes.map((n) => {\n      const labelW = ((n.node.label ?? n.node.id).length * 7.2) + TIP_LABEL_GAP + 8;\n      return n.x + labelW;\n    }));\n\n    const color = clade.color ?? t.cladeColors[ci % t.cladeColors.length];\n\n    elements.push(\n      rect({\n        x: minX,\n        y: minY,\n        width: maxX - minX,\n        height: maxY - minY,\n        rx: 4,\n        class: `schematex-phylo-clade-bg schematex-phylo-clade-bg-${clade.id}`,\n        fill: color,\n        \"fill-opacity\": 0.12,\n      })\n    );\n\n    if (clade.label) {\n      elements.push(\n        text(\n          {\n            x: maxX + 4,\n            y: (minY + maxY) / 2,\n            class: `schematex-phylo-clade-label schematex-phylo-clade-label-${clade.id}`,\n            fill: color,\n            \"font-weight\": \"bold\",\n            \"font-size\": \"13\",\n            \"dominant-baseline\": \"central\",\n          },\n          clade.label\n        )\n      );\n    }\n  }\n\n  return elements;\n}\n\n// ─── Main Renderer ──────────────────────────────────────────\n\nexport function renderPhylo(layout: PhyloLayoutResult): string {\n  const { ast, nodes, branches } = layout;\n  const t = resolveBiologyTheme(ast.metadata?.theme ?? \"default\");\n\n  const css = buildCSS(ast, t);\n\n  const titleOffset = ast.title ? 30 : 0;\n  const totalHeight = layout.height + titleOffset;\n  const totalWidth = layout.width;\n\n  // Build layers\n  const branchElements: string[] = [];\n  const nodeElements: string[] = [];\n  const labelElements: string[] = [];\n\n  // Branches\n  for (const branch of branches) {\n    const cladeIdx = branch.cladeId\n      ? ast.clades.findIndex((c) => c.id === branch.cladeId)\n      : -1;\n    const cladeColor =\n      cladeIdx >= 0\n        ? ast.clades[cladeIdx].color ?? t.cladeColors[cladeIdx % t.cladeColors.length]\n        : undefined;\n\n    const cls = branch.isConnector\n      ? \"schematex-phylo-branch schematex-phylo-branch-connector\"\n      : `schematex-phylo-branch schematex-phylo-branch-internal${branch.cladeId ? ` schematex-phylo-clade-${branch.cladeId}` : \"\"}`;\n\n    const attrs: Record<string, string | number | undefined> = {\n      d: branch.path,\n      class: cls,\n    };\n    if (cladeColor && !branch.isConnector) {\n      attrs.stroke = cladeColor;\n    }\n\n    branchElements.push(path(attrs));\n  }\n\n  // Nodes (support dots + root marker + tip labels)\n  const rootLayout = nodes.find((n) => n.node === ast.root);\n\n  // Root marker\n  if (rootLayout && !ast.unrooted) {\n    nodeElements.push(\n      circle({\n        cx: rootLayout.x,\n        cy: rootLayout.y,\n        r: 5,\n        class: \"schematex-phylo-root-marker\",\n      })\n    );\n  }\n\n  for (const layoutNode of nodes) {\n    const { node, x, y } = layoutNode;\n\n    // Support dots / labels for internal nodes\n    if (!node.isLeaf && node.support !== undefined) {\n      const support = node.support > 1 ? node.support : node.support * 100;\n      if (support >= SUPPORT_THRESHOLD) {\n        const color = getSupportColor(support, t);\n        nodeElements.push(\n          circle({\n            cx: x,\n            cy: y,\n            r: 4,\n            class: \"schematex-phylo-support-dot\",\n            fill: color,\n          })\n        );\n        labelElements.push(\n          text(\n            { x, y: y - 8, class: \"schematex-phylo-support-label\" },\n            String(Math.round(support))\n          )\n        );\n      }\n    }\n\n    // Tip labels\n    if (node.isLeaf) {\n      const label = node.label ?? node.id;\n      const italic = isSpeciesBinomial(label);\n      const cls = `schematex-phylo-tip-label${italic ? \" schematex-phylo-tip-label-italic\" : \"\"}`;\n\n      labelElements.push(\n        text(\n          {\n            x: x + TIP_LABEL_GAP,\n            y,\n            class: cls,\n            \"font-style\": italic ? \"italic\" : undefined,\n            \"data-taxon-id\": node.id,\n          },\n          label\n        )\n      );\n    }\n  }\n\n  // Clade backgrounds\n  const cladeBgElements = renderCladeBackgrounds(layout, t);\n\n  // Scale bar\n  const scaleBarEl = renderScaleBar(layout, t, ast.scaleLabel);\n\n  // Title\n  const titleEl = ast.title\n    ? text(\n        { x: totalWidth / 2, y: 20, class: \"schematex-phylo-title\" },\n        ast.title\n      )\n    : \"\";\n\n  // Assemble\n  const leafCount = nodes.filter((n) => n.node.isLeaf).length;\n  const svgContent = [\n    title(`Phylogenetic Tree${ast.title ? `: ${ast.title}` : \"\"}`),\n    desc(`Phylogenetic tree with ${leafCount} taxa, ${ast.mode} mode, ${ast.layout} layout`),\n    el(\"style\", {}, css),\n  ];\n\n  if (titleEl) svgContent.push(titleEl);\n\n  const transformY = titleOffset;\n\n  if (cladeBgElements.length > 0) {\n    svgContent.push(\n      group(\n        { class: \"schematex-phylo-clade-highlights\", transform: transformY ? `translate(0,${transformY})` : undefined },\n        cladeBgElements\n      )\n    );\n  }\n\n  svgContent.push(\n    group(\n      { class: \"schematex-phylo-branches\", transform: transformY ? `translate(0,${transformY})` : undefined },\n      branchElements\n    )\n  );\n\n  svgContent.push(\n    group(\n      { class: \"schematex-phylo-nodes\", transform: transformY ? `translate(0,${transformY})` : undefined },\n      nodeElements\n    )\n  );\n\n  svgContent.push(\n    group(\n      { class: \"schematex-phylo-labels\", transform: transformY ? `translate(0,${transformY})` : undefined },\n      labelElements\n    )\n  );\n\n  if (scaleBarEl) {\n    svgContent.push(\n      group(\n        { transform: transformY ? `translate(0,${transformY})` : undefined },\n        [scaleBarEl]\n      )\n    );\n  }\n\n  return svgRoot(\n    {\n      class: \"schematex-diagram schematex-phylo\",\n      viewBox: `0 0 ${totalWidth} ${totalHeight}`,\n      width: totalWidth,\n      height: totalHeight,\n    },\n    svgContent\n  );\n}\n","import type { DiagramPlugin } from \"../../core/types\";\nimport { parsePhylo, PhyloParseError } from \"./parser\";\nimport { layoutPhylo } from \"./layout\";\nimport type { PhyloLayoutResult } from \"./layout\";\nimport { renderPhylo } from \"./renderer\";\n\nexport const phylo: DiagramPlugin = {\n  type: \"phylo\",\n\n  detect(text: string): boolean {\n    const firstLine = text.trim().split(\"\\n\")[0]?.trim().toLowerCase() ?? \"\";\n    return firstLine === \"phylo\" || firstLine.startsWith(\"phylo \");\n  },\n\n  parse: parsePhylo,\n\n  render(text: string): string {\n    const ast = parsePhylo(text);\n    const layout = layoutPhylo(ast);\n    return renderPhylo(layout);\n  },\n};\n\nexport { parsePhylo, PhyloParseError, layoutPhylo, renderPhylo };\nexport type { PhyloLayoutResult };\n"]}

package/dist/chunk-CS67UBP3.cjs.map

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type {\n  BlockAST,\n  BlockNode,\n  BlockEdge,\n  SummingJunction,\n  BlockRole,\n} from \"../../core/types\";\n\nexport class BlockDiagramParseError extends Error {\n  constructor(\n    message: string,\n    public line?: number,\n    public column?: number,\n    public source?: string\n  ) {\n    super(line !== undefined ? `Line ${line}: ${message}` : message);\n    this.name = \"BlockDiagramParseError\";\n  }\n}\n\nconst ROLE_VALUES = new Set<BlockRole>([\n  \"plant\",\n  \"controller\",\n  \"sensor\",\n  \"actuator\",\n  \"reference\",\n  \"disturbance\",\n  \"generic\",\n]);\n\ninterface SignalDecl {\n  id: string;\n  label: string;\n  discrete: boolean;\n}\n\ninterface ParsedAttrs {\n  name?: string;\n  role?: BlockRole;\n  discrete?: boolean;\n  label?: string;\n  route?: \"above\" | \"below\";\n}\n\nfunction parseAttrs(s: string): ParsedAttrs {\n  // Inside [ ... ] — comma-separated  key:value  or bare flags like \"discrete\"\n  const result: ParsedAttrs = {};\n  // Split at commas not inside quotes\n  const parts: string[] = [];\n  let cur = \"\";\n  let inQuote = false;\n  for (const ch of s) {\n    if (ch === '\"') inQuote = !inQuote;\n    if (ch === \",\" && !inQuote) {\n      parts.push(cur);\n      cur = \"\";\n    } else {\n      cur += ch;\n    }\n  }\n  if (cur.trim()) parts.push(cur);\n\n  for (const raw of parts) {\n    const p = raw.trim();\n    if (!p) continue;\n    if (p === \"discrete\") {\n      result.discrete = true;\n      continue;\n    }\n    if (p.startsWith('\"') && p.endsWith('\"')) {\n      result.label = p.slice(1, -1);\n      continue;\n    }\n    const m = p.match(/^(\\w+)\\s*:\\s*(.+)$/);\n    if (!m) continue;\n    const key = m[1].toLowerCase();\n    let val = m[2].trim();\n    if (val.startsWith('\"') && val.endsWith('\"')) val = val.slice(1, -1);\n    if (key === \"name\") result.name = val;\n    else if (key === \"role\") {\n      if (ROLE_VALUES.has(val as BlockRole)) result.role = val as BlockRole;\n    } else if (key === \"label\") result.label = val;\n    else if (key === \"route\") {\n      if (val === \"above\" || val === \"below\") result.route = val;\n    }\n  }\n  return result;\n}\n\nexport function parseBlockDiagram(text: string): BlockAST {\n  const lines = text.split(\"\\n\").map((l) => l.replace(/\\r$/, \"\"));\n  let title: string | undefined;\n  const blocks: BlockNode[] = [];\n  const sums: SummingJunction[] = [];\n  const connections: BlockEdge[] = [];\n  const signals = new Map<string, SignalDecl>();\n\n  for (let i = 0; i < lines.length; i++) {\n    const rawLine = lines[i] ?? \"\";\n    const lineNo = i + 1;\n    const line = rawLine.replace(/#.*$/, \"\").trim();\n    if (!line) continue;\n\n    // Header: blockdiagram \"Title\"\n    if (/^blockdiagram\\b/i.test(line)) {\n      const t = line.match(/\"([^\"]*)\"/);\n      if (t) title = t[1];\n      continue;\n    }\n\n    // block:  ID = block(\"label\") [role: X, name: \"Y\"]\n    const blockMatch = line.match(\n      /^([A-Za-z_]\\w*)\\s*=\\s*block\\s*\\(\\s*\"([^\"]*)\"\\s*\\)\\s*(?:\\[([^\\]]*)\\])?\\s*$/\n    );\n    if (blockMatch) {\n      const id = blockMatch[1];\n      const label = blockMatch[2];\n      const attrs = blockMatch[3] ? parseAttrs(blockMatch[3]) : {};\n      const node: BlockNode = { id, label, role: attrs.role ?? \"generic\" };\n      if (attrs.route) node.route = attrs.route;\n      blocks.push(node);\n      continue;\n    }\n\n    // sum:  ID = sum(+a, -b, ...)\n    const sumMatch = line.match(\n      /^([A-Za-z_]\\w*)\\s*=\\s*sum\\s*\\(([^)]*)\\)\\s*$/\n    );\n    if (sumMatch) {\n      const id = sumMatch[1];\n      const rawInputs = sumMatch[2]\n        .split(\",\")\n        .map((x) => x.trim())\n        .filter(Boolean);\n      const inputs: string[] = [];\n      for (const tok of rawInputs) {\n        if (tok.startsWith(\"+\") || tok.startsWith(\"-\")) inputs.push(tok);\n        else inputs.push(\"+\" + tok);\n      }\n      sums.push({ id, inputs });\n      continue;\n    }\n\n    // signal:  ID = signal(\"label\") [discrete]\n    const sigMatch = line.match(\n      /^([A-Za-z_]\\w*)\\s*=\\s*signal\\s*\\(\\s*\"([^\"]*)\"\\s*\\)\\s*(?:\\[([^\\]]*)\\])?\\s*$/\n    );\n    if (sigMatch) {\n      const id = sigMatch[1];\n      const label = sigMatch[2];\n      const attrs = sigMatch[3] ? parseAttrs(sigMatch[3]) : {};\n      signals.set(id, { id, label, discrete: !!attrs.discrete });\n      continue;\n    }\n\n    // Connection chain: `A -> B -> C [label_or_attrs]`. Inline `[id] -> [id]` (D2/Mermaid) auto-declares.\n    const arrowIdx = line.indexOf(\"->\");\n    if (arrowIdx >= 0) {\n      let body = line;\n      let tailAttrs: ParsedAttrs = {};\n      // Trailing `[...]` must be preceded by whitespace, else it's an inline endpoint.\n      if (body.endsWith(\"]\")) {\n        let bracketStart = -1;\n        let depth = 0;\n        let inQuote = false;\n        for (let i = body.length - 1; i >= 1; i--) {\n          const ch = body[i];\n          if (ch === '\"') inQuote = !inQuote;\n          else if (!inQuote && ch === \"]\") depth++;\n          else if (!inQuote && ch === \"[\") {\n            depth--;\n            if (depth === 0) {\n              if (/\\s/.test(body[i - 1] ?? \"\")) bracketStart = i;\n              break;\n            }\n          }\n        }\n        if (bracketStart >= 0) {\n          const inner = body.slice(bracketStart + 1, -1).trim();\n          const isBareId = /^[A-Za-z_]\\w*$/.test(inner);\n          if (!isBareId) {\n            body = body.slice(0, bracketStart).trim();\n            if (inner.startsWith('\"') && inner.endsWith('\"') && !inner.slice(1, -1).includes(',')) {\n              tailAttrs.label = inner.slice(1, -1);\n            } else {\n              tailAttrs = parseAttrs(inner);\n            }\n          }\n        }\n      }\n      const parts = body.split(\"->\").map((x) => x.trim()).filter(Boolean);\n      if (parts.length < 2) {\n        throw new BlockDiagramParseError(`Invalid connection: ${line}`, lineNo, undefined, line);\n      }\n      const endpoints = parts.map((p) => {\n        const m = /^\\[([A-Za-z_]\\w*)\\]$/.exec(p);\n        return m ? m[1] : p;\n      });\n      for (const ep of endpoints) {\n        if (!/^[A-Za-z_]\\w*$/.test(ep)) continue;\n        const exists =\n          blocks.some((b) => b.id === ep) ||\n          sums.some((s) => s.id === ep) ||\n          signals.has(ep);\n        if (!exists) {\n          blocks.push({ id: ep, label: ep, role: \"generic\" });\n        }\n      }\n      for (let i = 0; i < endpoints.length - 1; i++) {\n        const from = endpoints[i];\n        const to = endpoints[i + 1];\n        const isLast = i === endpoints.length - 2;\n        const edge: BlockEdge = { from, to };\n        if (isLast && tailAttrs.label) edge.label = tailAttrs.label;\n        if (isLast && tailAttrs.discrete) edge.discrete = true;\n        connections.push(edge);\n      }\n      continue;\n    }\n  }\n\n  // Post-process: if edge endpoints reference a signal id, inline the signal.\n  // A signal is a pass-through label. Merge edges X->sig and sig->Y into X->Y,\n  // using signal's label (unless edge already has one) and discrete flag.\n  if (signals.size > 0) {\n    const merged: BlockEdge[] = [];\n    const bySource = new Map<string, BlockEdge[]>();\n    const byTarget = new Map<string, BlockEdge[]>();\n    for (const e of connections) {\n      if (!bySource.has(e.from)) bySource.set(e.from, []);\n      bySource.get(e.from)!.push(e);\n      if (!byTarget.has(e.to)) byTarget.set(e.to, []);\n      byTarget.get(e.to)!.push(e);\n    }\n\n    const consumed = new Set<BlockEdge>();\n    for (const sigId of signals.keys()) {\n      const sig = signals.get(sigId)!;\n      const incoming = byTarget.get(sigId) ?? [];\n      const outgoing = bySource.get(sigId) ?? [];\n      // For each incoming/outgoing pair, make a merged edge\n      for (const ine of incoming) {\n        for (const oute of outgoing) {\n          consumed.add(ine);\n          consumed.add(oute);\n          merged.push({\n            from: ine.from,\n            to: oute.to,\n            label: ine.label ?? oute.label ?? sig.label,\n            discrete: sig.discrete || ine.discrete || oute.discrete,\n          });\n        }\n      }\n    }\n    // Keep edges not consumed\n    for (const e of connections) {\n      if (!consumed.has(e)) merged.push(e);\n    }\n    connections.length = 0;\n    connections.push(...merged);\n  }\n\n  return {\n    type: \"blockdiagram\",\n    title,\n    blocks,\n    sums,\n    connections,\n  };\n}\n","import type { BlockAST, BlockEdge, BlockNode, SummingJunction } from \"../../core/types\";\n\nexport interface LaidBlock {\n  kind: \"block\";\n  id: string;\n  label: string;\n  role: string;\n  x: number;\n  y: number;\n  width: number;\n  height: number;\n  hasBranch?: boolean;\n}\n\nexport interface LaidSum {\n  kind: \"sum\";\n  id: string;\n  cx: number;\n  cy: number;\n  r: number;\n  hasBranch?: boolean;\n}\n\nexport interface LaidPort {\n  kind: \"port\";\n  id: string;\n  label: string;\n  x: number;\n  y: number;\n  isInput: boolean;\n  hasBranch?: boolean;\n}\n\nexport type LaidNode = LaidBlock | LaidSum | LaidPort;\n\nexport interface LaidEdgePolarity {\n  sign: \"+\" | \"-\";\n  pin: \"left\" | \"top\" | \"right\" | \"bottom\";\n  x: number;\n  y: number;\n}\n\nexport interface LaidEdge {\n  from: string;\n  to: string;\n  label?: string;\n  discrete: boolean;\n  path: string;\n  midX: number;\n  midY: number;\n  isFeedback: boolean;\n  /** Polarity sign to draw near the target if target is a sum */\n  polarity?: LaidEdgePolarity;\n}\n\nexport interface BlockDiagramLayout {\n  width: number;\n  height: number;\n  nodes: LaidNode[];\n  edges: LaidEdge[];\n  title?: string;\n  /** Offset applied to all y coords (>0 when feedforward rows exist above FWD_Y) */\n  topOffset: number;\n}\n\nconst BLOCK_W = 100;\nconst BLOCK_H = 54;\nconst SUM_R = 12;\nconst FWD_Y = 110;\nconst ROW_GAP = 80;\nconst FIRST_ROW_OFFSET = 110;\nconst COL_GAP = 60;\nconst LEFT_PAD = 30;\nconst RIGHT_PAD = 30;\n\ninterface Track {\n  /** row index (1, 2, ...); 0 means forward path */\n  row: number;\n  /** above = y < FWD_Y; below = y > FWD_Y */\n  side: \"above\" | \"below\";\n  /** Occupied col ranges [minCol, maxCol] for collision detection */\n  ranges: Array<[number, number]>;\n}\n\nexport function layoutBlockDiagram(ast: BlockAST): BlockDiagramLayout {\n  const nodeIds = new Set<string>();\n  for (const b of ast.blocks) nodeIds.add(b.id);\n  for (const s of ast.sums) nodeIds.add(s.id);\n  for (const e of ast.connections) {\n    nodeIds.add(e.from);\n    nodeIds.add(e.to);\n  }\n\n  const outgoing = new Map<string, BlockEdge[]>();\n  const incoming = new Map<string, BlockEdge[]>();\n  for (const id of nodeIds) {\n    outgoing.set(id, []);\n    incoming.set(id, []);\n  }\n  for (const e of ast.connections) {\n    outgoing.get(e.from)!.push(e);\n    incoming.get(e.to)!.push(e);\n  }\n\n  // Entry points\n  const hasIn = nodeIds.has(\"in\");\n  const entries: string[] = [];\n  if (hasIn) entries.push(\"in\");\n  for (const id of nodeIds) {\n    if (id === \"in\" || id === \"out\") continue;\n    if ((incoming.get(id) ?? []).length === 0 && !entries.includes(id)) {\n      entries.push(id);\n    }\n  }\n\n  // BFS forward (first-visit col assignment — back-edges become feedback)\n  const col = new Map<string, number>();\n  const queue: string[] = [];\n  for (const e of entries) {\n    col.set(e, 0);\n    queue.push(e);\n  }\n  while (queue.length > 0) {\n    const cur = queue.shift()!;\n    const c = col.get(cur)!;\n    for (const edge of outgoing.get(cur) ?? []) {\n      if (!col.has(edge.to)) {\n        col.set(edge.to, c + 1);\n        queue.push(edge.to);\n      }\n    }\n  }\n  // Any unreached node\n  for (const id of nodeIds) {\n    if (!col.has(id)) col.set(id, 1);\n  }\n\n  // Feedback detection: outgoing edges are ALL going backward\n  const isFeedback = new Set<string>();\n  for (const id of nodeIds) {\n    if (id === \"in\" || id === \"out\") continue;\n    const myCol = col.get(id)!;\n    const outs = outgoing.get(id) ?? [];\n    if (outs.length === 0) continue;\n    const allBack = outs.every((e) => (col.get(e.to) ?? myCol) < myCol);\n    if (allBack) isFeedback.add(id);\n  }\n\n  // For each feedback node, compute loop range [minCol, maxCol]\n  const blockById = new Map<string, BlockNode>();\n  for (const b of ast.blocks) blockById.set(b.id, b);\n\n  interface FbInfo {\n    id: string;\n    range: [number, number];\n    side: \"above\" | \"below\";\n    row: number; // depth\n  }\n  const fbInfos: FbInfo[] = [];\n  for (const id of isFeedback) {\n    const outs = outgoing.get(id) ?? [];\n    const ins = incoming.get(id) ?? [];\n    // targets (forward nodes it feeds back into)\n    const targetCols = outs.map((e) => col.get(e.to) ?? 0);\n    const sourceCols = ins.map((e) => col.get(e.from) ?? 0);\n    const minC = Math.min(...targetCols, ...sourceCols);\n    const maxC = Math.max(...targetCols, ...sourceCols);\n    const bn = blockById.get(id);\n    const side: \"above\" | \"below\" = bn?.route === \"above\" ? \"above\" : \"below\";\n    fbInfos.push({ id, range: [minC, maxC], side, row: 0 });\n  }\n\n  // Sort by range width desc (outermost first), break ties by min col\n  fbInfos.sort((a, b) => {\n    const wa = a.range[1] - a.range[0];\n    const wb = b.range[1] - b.range[0];\n    if (wa !== wb) return wb - wa;\n    return a.range[0] - b.range[0];\n  });\n\n  // Assign tracks per side, greedy interval-overlap depth\n  const tracks: Record<\"above\" | \"below\", Track[]> = { above: [], below: [] };\n  for (const fb of fbInfos) {\n    let row = 1;\n    while (true) {\n      // check if any existing block on this (side, row) has overlapping range\n      const occupied = tracks[fb.side].find((t) => t.row === row);\n      const conflict =\n        occupied?.ranges.some(\n          ([a, b]) => !(fb.range[1] < a || fb.range[0] > b)\n        ) ?? false;\n      if (!conflict) {\n        if (occupied) occupied.ranges.push(fb.range);\n        else\n          tracks[fb.side].push({ row, side: fb.side, ranges: [fb.range] });\n        fb.row = row;\n        break;\n      }\n      row++;\n    }\n  }\n\n  const maxBelowRow = tracks.below.reduce((m, t) => Math.max(m, t.row), 0);\n  const maxAboveRow = tracks.above.reduce((m, t) => Math.max(m, t.row), 0);\n\n  // Compute y per (side, row)\n  const yFor = (side: \"above\" | \"below\", row: number): number => {\n    const step = FIRST_ROW_OFFSET + (row - 1) * ROW_GAP;\n    return side === \"above\" ? FWD_Y - step : FWD_Y + step;\n  };\n\n  // For the feedforward row(s) to have room, shift all y by topOffset\n  const topOffset = maxAboveRow > 0 ? (FIRST_ROW_OFFSET + (maxAboveRow - 1) * ROW_GAP) + 30 : 30;\n  const forwardY = FWD_Y + (topOffset - 30);\n\n  // Remap y helper\n  const rowY = (side: \"above\" | \"below\", row: number): number =>\n    yFor(side, row) + (topOffset - 30);\n\n  // Normalize columns\n  let maxFwdCol = 0;\n  for (const id of nodeIds) {\n    if (!isFeedback.has(id)) maxFwdCol = Math.max(maxFwdCol, col.get(id) ?? 0);\n  }\n  const colCount = maxFwdCol + 1;\n  const colContent = new Array(colCount).fill(BLOCK_W);\n\n  const colX: number[] = [];\n  {\n    let x = LEFT_PAD;\n    for (let i = 0; i < colCount; i++) {\n      const w = i === 0 && hasIn ? 30 : colContent[i];\n      colX.push(x + w / 2);\n      x += w + COL_GAP;\n    }\n  }\n  const totalWidth = colX.length\n    ? colX[colX.length - 1] + BLOCK_W / 2 + RIGHT_PAD\n    : 400;\n\n  // Lookup for feedback row info\n  const fbById = new Map<string, FbInfo>();\n  for (const f of fbInfos) fbById.set(f.id, f);\n\n  const nodes: LaidNode[] = [];\n  const branchCount = new Map<string, number>();\n  for (const e of ast.connections) {\n    branchCount.set(e.from, (branchCount.get(e.from) ?? 0) + 1);\n  }\n  const hasBranchOf = (id: string) => (branchCount.get(id) ?? 0) > 1;\n\n  for (const b of ast.blocks) {\n    const c = col.get(b.id) ?? 0;\n    const cx = colX[Math.min(c, colX.length - 1)];\n    let cy = forwardY;\n    const fb = fbById.get(b.id);\n    if (fb) cy = rowY(fb.side, fb.row);\n    nodes.push({\n      kind: \"block\",\n      id: b.id,\n      label: b.label,\n      role: b.role ?? \"generic\",\n      x: cx - BLOCK_W / 2,\n      y: cy - BLOCK_H / 2,\n      width: BLOCK_W,\n      height: BLOCK_H,\n      hasBranch: hasBranchOf(b.id),\n    });\n  }\n\n  for (const s of ast.sums) {\n    const c = col.get(s.id) ?? 0;\n    const cx = colX[Math.min(c, colX.length - 1)];\n    let cy = forwardY;\n    const fb = fbById.get(s.id);\n    if (fb) cy = rowY(fb.side, fb.row);\n    nodes.push({\n      kind: \"sum\",\n      id: s.id,\n      cx,\n      cy,\n      r: SUM_R,\n      hasBranch: hasBranchOf(s.id),\n    });\n  }\n\n  if (hasIn) {\n    nodes.push({\n      kind: \"port\",\n      id: \"in\",\n      label: \"in\",\n      x: LEFT_PAD,\n      y: forwardY,\n      isInput: true,\n      hasBranch: hasBranchOf(\"in\"),\n    });\n  }\n  if (nodeIds.has(\"out\")) {\n    const outCol = col.get(\"out\") ?? maxFwdCol;\n    const cx = colX[Math.min(outCol, colX.length - 1)];\n    nodes.push({\n      kind: \"port\",\n      id: \"out\",\n      label: \"out\",\n      x: cx,\n      y: forwardY,\n      isInput: false,\n    });\n  }\n\n  // Anchor lookup\n  interface Anchor {\n    left: { x: number; y: number };\n    right: { x: number; y: number };\n    top: { x: number; y: number };\n    bottom: { x: number; y: number };\n    cx: number;\n    cy: number;\n  }\n  const anchors = new Map<string, Anchor>();\n  for (const n of nodes) {\n    if (n.kind === \"block\") {\n      anchors.set(n.id, {\n        left: { x: n.x, y: n.y + n.height / 2 },\n        right: { x: n.x + n.width, y: n.y + n.height / 2 },\n        top: { x: n.x + n.width / 2, y: n.y },\n        bottom: { x: n.x + n.width / 2, y: n.y + n.height },\n        cx: n.x + n.width / 2,\n        cy: n.y + n.height / 2,\n      });\n    } else if (n.kind === \"sum\") {\n      anchors.set(n.id, {\n        left: { x: n.cx - n.r, y: n.cy },\n        right: { x: n.cx + n.r, y: n.cy },\n        top: { x: n.cx, y: n.cy - n.r },\n        bottom: { x: n.cx, y: n.cy + n.r },\n        cx: n.cx,\n        cy: n.cy,\n      });\n    } else {\n      anchors.set(n.id, {\n        left: { x: n.x - 10, y: n.y },\n        right: { x: n.x + (n.isInput ? 20 : 0), y: n.y },\n        top: { x: n.x, y: n.y - 10 },\n        bottom: { x: n.x, y: n.y + 10 },\n        cx: n.x,\n        cy: n.y,\n      });\n    }\n  }\n\n  // Build sum-input-polarity lookup\n  const sumPolarity = new Map<string, Map<string, \"+\" | \"-\">>();\n  for (const s of ast.sums) {\n    const m = new Map<string, \"+\" | \"-\">();\n    for (const tok of s.inputs) {\n      const sign = tok.startsWith(\"-\") ? \"-\" : \"+\";\n      const srcId = tok.replace(/^[+-]/, \"\");\n      m.set(srcId, sign);\n    }\n    sumPolarity.set(s.id, m);\n  }\n\n  // Build edges\n  const edges: LaidEdge[] = [];\n  // Track horizontal-track offsets for feedback paths to avoid overlap\n  const sumById = new Map<string, SummingJunction>();\n  for (const s of ast.sums) sumById.set(s.id, s);\n\n  for (const e of ast.connections) {\n    const fromA = anchors.get(e.from);\n    const toA = anchors.get(e.to);\n    if (!fromA || !toA) continue;\n\n    const fromFb = fbById.get(e.from);\n    const toFb = fbById.get(e.to);\n    const fromCol = col.get(e.from) ?? 0;\n    const toCol = col.get(e.to) ?? 0;\n\n    // Determine pin on target when target is a sum: left (from forward earlier),\n    // bottom (from below feedback), top (from above feedforward), or right (rare, output)\n    let polarity: LaidEdgePolarity | undefined;\n    if (sumById.has(e.to)) {\n      const pm = sumPolarity.get(e.to);\n      const sign = pm?.get(e.from) ?? \"+\";\n      let pin: \"left\" | \"top\" | \"bottom\" | \"right\" = \"left\";\n      if (fromFb?.side === \"below\") pin = \"bottom\";\n      else if (fromFb?.side === \"above\") pin = \"top\";\n      else if (fromCol < toCol) pin = \"left\";\n      else pin = \"bottom\";\n      const sumNode = nodes.find(\n        (n) => n.kind === \"sum\" && n.id === e.to\n      ) as LaidSum | undefined;\n      if (sumNode) {\n        let px = sumNode.cx, py = sumNode.cy;\n        if (pin === \"left\") {\n          px = sumNode.cx - sumNode.r - 8;\n          py = sumNode.cy + 6;\n        } else if (pin === \"bottom\") {\n          px = sumNode.cx - sumNode.r - 2;\n          py = sumNode.cy + sumNode.r + 10;\n        } else if (pin === \"top\") {\n          px = sumNode.cx - sumNode.r - 2;\n          py = sumNode.cy - sumNode.r - 2;\n        }\n        polarity = { sign, pin, x: px, y: py };\n      }\n    }\n\n    // Route\n    let path: string;\n    let midX: number, midY: number;\n    let isFb = false;\n\n    const fromIsFbSide = fromFb?.side;\n    const toIsFbSide = toFb?.side;\n\n    if (fromIsFbSide && toIsFbSide === fromIsFbSide) {\n      // within same feedback row\n      const sx = fromA.left.x;\n      const sy = fromA.left.y;\n      const tx = toA.right.x;\n      const ty = toA.right.y;\n      path = `M ${sx} ${sy} L ${tx} ${ty}`;\n      midX = (sx + tx) / 2;\n      midY = sy - 6;\n      isFb = true;\n    } else if (!fromIsFbSide && toIsFbSide === \"below\") {\n      // forward → below feedback: branch down from source.bottom\n      const sx = fromA.bottom.x;\n      const sy = fromA.bottom.y;\n      const tx = toA.right.x;\n      const ty = toA.right.y;\n      path = `M ${sx} ${sy} L ${sx} ${ty} L ${tx} ${ty}`;\n      midX = sx;\n      midY = (sy + ty) / 2;\n      isFb = true;\n    } else if (!fromIsFbSide && toIsFbSide === \"above\") {\n      // forward → above feedforward: branch up from source.top\n      const sx = fromA.top.x;\n      const sy = fromA.top.y;\n      const tx = toA.right.x;\n      const ty = toA.right.y;\n      path = `M ${sx} ${sy} L ${sx} ${ty} L ${tx} ${ty}`;\n      midX = sx;\n      midY = (sy + ty) / 2;\n      isFb = true;\n    } else if (fromIsFbSide === \"below\" && !toIsFbSide) {\n      // below feedback → forward target (bottom pin if sum)\n      const sx = fromA.left.x;\n      const sy = fromA.left.y;\n      const tx = toA.bottom.x;\n      const ty = toA.bottom.y;\n      path = `M ${sx} ${sy} L ${tx} ${sy} L ${tx} ${ty}`;\n      midX = (sx + tx) / 2;\n      midY = sy - 6;\n      isFb = true;\n    } else if (fromIsFbSide === \"above\" && !toIsFbSide) {\n      // above feedforward → forward target (top pin if sum)\n      const sx = fromA.left.x;\n      const sy = fromA.left.y;\n      const tx = toA.top.x;\n      const ty = toA.top.y;\n      path = `M ${sx} ${sy} L ${tx} ${sy} L ${tx} ${ty}`;\n      midX = (sx + tx) / 2;\n      midY = sy - 6;\n      isFb = true;\n    } else if (toCol < fromCol) {\n      // generic back-edge fallback (below)\n      const sx = fromA.right.x;\n      const sy = fromA.right.y;\n      const tx = toA.bottom.x;\n      const ty = toA.bottom.y;\n      const dipY = Math.max(sy, ty) + 60;\n      path = `M ${sx} ${sy} L ${sx} ${dipY} L ${tx} ${dipY} L ${tx} ${ty}`;\n      midX = (sx + tx) / 2;\n      midY = dipY + 10;\n      isFb = true;\n    } else {\n      // forward edge\n      const sx = fromA.right.x;\n      const sy = fromA.right.y;\n      const tx = toA.left.x;\n      const ty = toA.left.y;\n      if (Math.abs(sy - ty) < 0.5) {\n        path = `M ${sx} ${sy} L ${tx} ${ty}`;\n      } else {\n        const midXH = (sx + tx) / 2;\n        path = `M ${sx} ${sy} L ${midXH} ${sy} L ${midXH} ${ty} L ${tx} ${ty}`;\n      }\n      midX = (sx + tx) / 2;\n      midY = sy - 8;\n    }\n\n    edges.push({\n      from: e.from,\n      to: e.to,\n      label: e.label,\n      discrete: !!e.discrete,\n      path,\n      midX,\n      midY,\n      isFeedback: isFb,\n      polarity,\n    });\n  }\n\n  // Total canvas height: enough for top rows + forward + bottom rows\n  const totalTopSpace =\n    maxAboveRow > 0\n      ? FIRST_ROW_OFFSET + (maxAboveRow - 1) * ROW_GAP + 60\n      : 30;\n  const totalBottomSpace =\n    maxBelowRow > 0\n      ? FIRST_ROW_OFFSET + (maxBelowRow - 1) * ROW_GAP + 60\n      : 100;\n  const height = Math.max(\n    forwardY + totalBottomSpace,\n    FWD_Y + 170,\n    totalTopSpace + totalBottomSpace\n  );\n\n  return {\n    width: totalWidth,\n    height,\n    nodes,\n    edges,\n    title: ast.title,\n    topOffset,\n  };\n}\n","import type { BlockAST } from \"../../core/types\";\nimport { layoutBlockDiagram } from \"./layout\";\nimport {\n  svgRoot,\n  defs,\n  group,\n  el,\n  circle,\n  path as pathEl,\n  text,\n  title as titleEl,\n  desc,\n} from \"../../core/svg\";\n\nconst ROLE_FILL: Record<string, string> = {\n  plant: \"#ffffff\",\n  controller: \"#E3F2FD\",\n  sensor: \"#F3E5F5\",\n  actuator: \"#E8F5E9\",\n  filter: \"#FFF8E1\",\n  reference: \"#ffffff\",\n  disturbance: \"#FFF3E0\",\n  generic: \"#ffffff\",\n};\n\nexport function renderBlockDiagram(ast: BlockAST): string {\n  const layout = layoutBlockDiagram(ast);\n  const titleOffset = ast.title ? 26 : 0;\n  const { width } = layout;\n  const height = layout.height + titleOffset;\n\n  const css = `\n.schematex-bd { font-family: system-ui, -apple-system, sans-serif; }\n.schematex-bd-block { stroke: #333; stroke-width: 2; }\n.schematex-bd-tf { font: italic 14px serif; fill: #111; }\n.schematex-bd-block-name { font: 10px sans-serif; fill: #666; }\n.schematex-bd-sum { fill: #fff; stroke: #333; stroke-width: 2; }\n.schematex-bd-sum-sign { font: bold 11px sans-serif; fill: #333; }\n.schematex-bd-signal { stroke: #333; stroke-width: 2; fill: none; }\n.schematex-bd-signal-discrete { stroke: #333; stroke-width: 2; fill: none; stroke-dasharray: 6 4; }\n.schematex-bd-signal-label { font: italic 12px serif; fill: #333; }\n.schematex-bd-port-label { font: italic 13px serif; fill: #111; }\n.schematex-bd-title { font: bold 15px sans-serif; fill: #111; }\n.schematex-bd-branch { fill: #333; stroke: none; }\n`.trim();\n\n  const arrowDef = el(\n    \"marker\",\n    {\n      id: \"lt-bd-arrow\",\n      markerWidth: 10,\n      markerHeight: 8,\n      refX: 9,\n      refY: 4,\n      orient: \"auto\",\n    },\n    [el(\"polygon\", { points: \"0 0, 10 4, 0 8\", fill: \"#333\" })]\n  );\n\n  const nodeSvgs: string[] = [];\n  const edgeSvgs: string[] = [];\n  const branchSvgs: string[] = [];\n\n  for (const n of layout.nodes) {\n    if (n.kind === \"block\") {\n      const fill = ROLE_FILL[n.role] ?? \"#fff\";\n      nodeSvgs.push(\n        group(\n          {\n            transform: `translate(${n.x}, ${n.y})`,\n            \"data-block-id\": n.id,\n            \"data-block-role\": n.role,\n          },\n          [\n            el(\"rect\", {\n              width: n.width,\n              height: n.height,\n              fill,\n              class: \"schematex-bd-block\",\n              rx: 2,\n            }),\n            text(\n              {\n                x: n.width / 2,\n                y: n.height / 2 + 5,\n                \"text-anchor\": \"middle\",\n                class: \"schematex-bd-tf\",\n              },\n              n.label\n            ),\n          ]\n        )\n      );\n      if (n.hasBranch) {\n        branchSvgs.push(\n          circle({\n            cx: n.x + n.width,\n            cy: n.y + n.height / 2,\n            r: 3.5,\n            class: \"schematex-bd-branch\",\n          })\n        );\n      }\n    } else if (n.kind === \"sum\") {\n      nodeSvgs.push(\n        group({ \"data-sum-id\": n.id }, [\n          circle({\n            cx: n.cx,\n            cy: n.cy,\n            r: n.r,\n            class: \"schematex-bd-sum\",\n          }),\n        ])\n      );\n      if (n.hasBranch) {\n        branchSvgs.push(\n          circle({\n            cx: n.cx + n.r,\n            cy: n.cy,\n            r: 3.5,\n            class: \"schematex-bd-branch\",\n          })\n        );\n      }\n    } else if (n.kind === \"port\") {\n      nodeSvgs.push(\n        group({ \"data-port-id\": n.id }, [\n          text(\n            {\n              x: n.isInput ? n.x - 4 : n.x + 4,\n              y: n.y + 4,\n              \"text-anchor\": n.isInput ? \"end\" : \"start\",\n              class: \"schematex-bd-port-label\",\n            },\n            n.label\n          ),\n        ])\n      );\n    }\n  }\n\n  for (const e of layout.edges) {\n    const cls = e.discrete\n      ? \"schematex-bd-signal-discrete\"\n      : \"schematex-bd-signal\";\n    edgeSvgs.push(\n      pathEl({\n        d: e.path,\n        class: cls,\n        \"marker-end\": \"url(#lt-bd-arrow)\",\n        \"data-from\": e.from,\n        \"data-to\": e.to,\n      })\n    );\n    if (e.label) {\n      edgeSvgs.push(\n        text(\n          {\n            x: e.midX,\n            y: e.midY,\n            \"text-anchor\": \"middle\",\n            class: \"schematex-bd-signal-label\",\n          },\n          e.label\n        )\n      );\n    }\n    if (e.polarity) {\n      edgeSvgs.push(\n        text(\n          {\n            x: e.polarity.x,\n            y: e.polarity.y,\n            \"text-anchor\": \"middle\",\n            class: \"schematex-bd-sum-sign\",\n          },\n          e.polarity.sign === \"-\" ? \"−\" : \"+\"\n        )\n      );\n    }\n  }\n\n  const titleSvg = ast.title\n    ? text(\n        {\n          x: width / 2,\n          y: 18,\n          \"text-anchor\": \"middle\",\n          class: \"schematex-bd-title\",\n        },\n        ast.title\n      )\n    : \"\";\n\n  return svgRoot(\n    {\n      class: \"schematex-bd\",\n      viewBox: `0 0 ${width} ${height}`,\n      width,\n      height,\n      role: \"img\",\n      \"data-diagram-type\": \"blockdiagram\",\n    },\n    [\n      titleEl(ast.title ?? \"Block Diagram\"),\n      desc(\n        `Block diagram with ${ast.blocks.length} blocks, ${ast.sums.length} summing junctions, ${ast.connections.length} signals`\n      ),\n      defs([el(\"style\", {}, css), arrowDef]),\n      titleSvg,\n      group({ transform: `translate(0, ${titleOffset})` }, [\n        group({ class: \"schematex-bd-signals\" }, edgeSvgs),\n        group({ class: \"schematex-bd-nodes\" }, nodeSvgs),\n        group({ class: \"schematex-bd-branches\" }, branchSvgs),\n      ]),\n    ]\n  );\n}\n","import type { DiagramPlugin } from \"../../core/types\";\nimport { parseBlockDiagram } from \"./parser\";\nimport { renderBlockDiagram } from \"./renderer\";\n\nexport const blockdiagram: DiagramPlugin = {\n  type: \"blockdiagram\",\n  detect(text: string): boolean {\n    const first = text.trim().split(\"\\n\")[0]?.trim().toLowerCase() ?? \"\";\n    return first.startsWith(\"blockdiagram\");\n  },\n  parse: parseBlockDiagram,\n\n  render(text: string): string {\n    const ast = parseBlockDiagram(text);\n    return renderBlockDiagram(ast);\n  },\n};\n\nexport { parseBlockDiagram } from \"./parser\";\nexport { renderBlockDiagram } from \"./renderer\";\nexport { layoutBlockDiagram } from \"./layout\";\n"]}