rho-graph 0.1.0

package/dist/cli/commands/status.js

@@ -0,0 +1,40 @@
+import { resolve } from "node:path";
+import { loadConfig } from "../../config.js";
+import { createConnection } from "../../db/connection.js";
+export function registerStatusCommand(program) {
+    program
+        .command("status")
+        .description("Show index status")
+        .action(async () => {
+        const repoPath = resolve(".");
+        const config = loadConfig(repoPath);
+        const db = createConnection(config.neo4j);
+        const healthy = await db.healthCheck();
+        if (!healthy) {
+            console.log("Neo4j is not running. Run `code-graph-rag init` to start it.");
+            process.exit(1);
+        }
+        const session = db.session();
+        try {
+            const repos = await session.run("MATCH (r:Repository) RETURN r.name AS name, r.path AS path, r.lastIndexedAt AS lastIndexed");
+            const files = await session.run("MATCH (f:File) RETURN f.language AS language, count(f) AS count");
+            const functions = await session.run("MATCH (fn:Function) RETURN count(fn) AS count");
+            const classes = await session.run("MATCH (c:Class) RETURN count(c) AS count");
+            console.log("\nRepositories:");
+            for (const r of repos.records) {
+                console.log(`  ${r.get("name")} (${r.get("path")}) — last indexed: ${r.get("lastIndexed")}`);
+            }
+            console.log("\nFiles by language:");
+            for (const f of files.records) {
+                console.log(`  ${f.get("language")}: ${f.get("count")}`);
+            }
+            console.log(`\nFunctions: ${functions.records[0]?.get("count") ?? 0}`);
+            console.log(`Classes: ${classes.records[0]?.get("count") ?? 0}`);
+        }
+        finally {
+            await session.close();
+            await db.close();
+        }
+    });
+}
+//# sourceMappingURL=status.js.map

package/dist/cli/commands/status.js.map

@@ -0,0 +1 @@
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package/dist/cli/commands/visualize.d.ts

@@ -0,0 +1,2 @@
+import { Command } from "commander";
+export declare function registerVisualizeCommand(program: Command): void;

package/dist/cli/commands/visualize.js

@@ -0,0 +1,45 @@
+import { resolve, dirname } from "node:path";
+import { fileURLToPath } from "node:url";
+import ora from "ora";
+import { loadConfig } from "../../config.js";
+import { isDockerAvailable, startNeo4j, waitForNeo4j } from "../../docker/neo4j.js";
+import { startVisualizationServer } from "../../visualize/server.js";
+const __dirname = dirname(fileURLToPath(import.meta.url));
+export function registerVisualizeCommand(program) {
+    program
+        .command("visualize")
+        .description("Open browser-based graph visualization")
+        .option("--repo <name>", "Filter by repository")
+        .option("--file <path>", "Focus on a specific file")
+        .option("--function <name>", "Focus on a specific function")
+        .option("--port <port>", "Server port", "3333")
+        .action(async (opts) => {
+        const repoPath = resolve(".");
+        const config = loadConfig(repoPath);
+        if (config.neo4j.managed) {
+            if (!isDockerAvailable()) {
+                console.error("Docker is not available. Install Docker or set neo4j.managed to false.");
+                process.exit(1);
+            }
+            const spinner = ora("Starting Neo4j...").start();
+            const composePath = resolve(__dirname, "../../../docker-compose.yml");
+            startNeo4j(composePath);
+            const ready = await waitForNeo4j(config.neo4j.uri, config.neo4j.username, config.neo4j.password);
+            if (!ready) {
+                spinner.fail("Neo4j failed to start");
+                process.exit(1);
+            }
+            spinner.succeed("Neo4j running");
+        }
+        await startVisualizationServer({
+            neo4jConfig: config.neo4j,
+            port: parseInt(opts.port),
+            filter: {
+                repo: opts.repo,
+                file: opts.file,
+                function: opts.function,
+            },
+        });
+    });
+}
+//# sourceMappingURL=visualize.js.map

package/dist/cli/commands/visualize.js.map

@@ -0,0 +1 @@
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package/dist/cli/index.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/cli/index.js

@@ -0,0 +1,32 @@
+// src/cli/index.ts
+import { Command } from "commander";
+import { registerInitCommand } from "./commands/init.js";
+import { registerIndexCommand } from "./commands/index-cmd.js";
+import { registerStatusCommand } from "./commands/status.js";
+import { registerSetupCommand } from "./commands/setup.js";
+import { registerInstallMcpCommand } from "./commands/install-mcp.js";
+import { registerInstallHookCommand } from "./commands/install-hook.js";
+import { registerQueryCommand } from "./commands/query.js";
+import { registerVisualizeCommand } from "./commands/visualize.js";
+const program = new Command();
+program
+    .name("code-graph-rag")
+    .description("Graph-RAG code indexer — token-efficient code search for AI agents")
+    .version("0.1.0");
+registerInitCommand(program);
+registerIndexCommand(program);
+registerStatusCommand(program);
+registerSetupCommand(program);
+registerInstallMcpCommand(program);
+registerInstallHookCommand(program);
+registerQueryCommand(program);
+registerVisualizeCommand(program);
+program
+    .command("mcp-serve")
+    .description("Start the MCP server (used by Claude Code)")
+    .action(async () => {
+    const { startMcpServer } = await import("../mcp/index.js");
+    await startMcpServer();
+});
+program.parse();
+//# sourceMappingURL=index.js.map

package/dist/cli/index.js.map

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package/dist/config.d.ts

@@ -0,0 +1,22 @@
+export interface Neo4jConfig {
+    uri: string;
+    username: string;
+    password: string;
+    managed: boolean;
+}
+export interface IndexConfig {
+    include: string[];
+    exclude: string[];
+    languages: string;
+}
+export interface RepoEntry {
+    path: string;
+    name: string;
+}
+export interface Config {
+    neo4j: Neo4jConfig;
+    index: IndexConfig;
+    repos: RepoEntry[];
+}
+export declare const DEFAULT_CONFIG: Config;
+export declare function loadConfig(repoRoot: string): Config;

package/dist/config.js

@@ -0,0 +1,95 @@
+import { readFileSync, existsSync } from "node:fs";
+import { join } from "node:path";
+import { homedir } from "node:os";
+export const DEFAULT_CONFIG = {
+    neo4j: {
+        uri: "bolt://localhost:7687",
+        username: "neo4j",
+        password: "code-graph-rag",
+        managed: true,
+    },
+    index: {
+        include: ["**/*"],
+        exclude: [
+            // VCS
+            ".git",
+            // JS/TS dependencies, build outputs, framework caches
+            "node_modules",
+            "bower_components",
+            "dist",
+            "build",
+            "vendor",
+            ".next",
+            ".nuxt",
+            "coverage",
+            ".nyc_output",
+            // Python virtual environments and vendored packages
+            "venv",
+            ".venv",
+            "virtualenv",
+            ".tox",
+            "site-packages",
+            // Python tool caches
+            "__pycache__",
+            ".pytest_cache",
+            ".mypy_cache",
+            ".ruff_cache",
+            // Rust / JVM build outputs
+            "target",
+            ".gradle",
+            // IDE state
+            ".idea",
+            ".vscode",
+            // Generic caches
+            ".cache",
+        ],
+        languages: "auto",
+    },
+    repos: [],
+};
+function deepMerge(base, override) {
+    const result = structuredClone(base);
+    if (override.neo4j) {
+        result.neo4j = { ...result.neo4j, ...override.neo4j };
+    }
+    if (override.index) {
+        result.index = { ...result.index, ...override.index };
+    }
+    if (override.repos) {
+        result.repos = override.repos;
+    }
+    return result;
+}
+function loadJsonFile(filePath) {
+    if (!existsSync(filePath))
+        return null;
+    const raw = readFileSync(filePath, "utf-8");
+    return JSON.parse(raw);
+}
+export function loadConfig(repoRoot) {
+    let config = structuredClone(DEFAULT_CONFIG);
+    // Global config: ~/.config/code-graph-rag/config.json
+    const globalPath = join(homedir(), ".config", "code-graph-rag", "config.json");
+    const globalOverrides = loadJsonFile(globalPath);
+    if (globalOverrides) {
+        config = deepMerge(config, globalOverrides);
+    }
+    // Repo config: .code-graph-rag.json in repo root
+    const repoPath = join(repoRoot, ".code-graph-rag.json");
+    const repoOverrides = loadJsonFile(repoPath);
+    if (repoOverrides) {
+        config = deepMerge(config, repoOverrides);
+    }
+    // Environment variable overrides
+    if (process.env.NEO4J_URI) {
+        config.neo4j.uri = process.env.NEO4J_URI;
+    }
+    if (process.env.NEO4J_USERNAME) {
+        config.neo4j.username = process.env.NEO4J_USERNAME;
+    }
+    if (process.env.NEO4J_PASSWORD) {
+        config.neo4j.password = process.env.NEO4J_PASSWORD;
+    }
+    return config;
+}
+//# sourceMappingURL=config.js.map

package/dist/config.js.map

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package/dist/db/connection.d.ts

@@ -0,0 +1,13 @@
+import { type Driver, type Session } from "neo4j-driver";
+export interface ConnectionConfig {
+    uri: string;
+    username: string;
+    password: string;
+}
+export interface DbConnection {
+    driver: Driver;
+    session(): Session;
+    healthCheck(): Promise<boolean>;
+    close(): Promise<void>;
+}
+export declare function createConnection(config: ConnectionConfig): DbConnection;

package/dist/db/connection.js

@@ -0,0 +1,25 @@
+import neo4j from "neo4j-driver";
+export function createConnection(config) {
+    const driver = neo4j.driver(config.uri, neo4j.auth.basic(config.username, config.password));
+    return {
+        driver,
+        session() {
+            return driver.session();
+        },
+        async healthCheck() {
+            try {
+                const session = driver.session();
+                await session.run("RETURN 1");
+                await session.close();
+                return true;
+            }
+            catch {
+                return false;
+            }
+        },
+        async close() {
+            await driver.close();
+        },
+    };
+}
+//# sourceMappingURL=connection.js.map

package/dist/db/connection.js.map

@@ -0,0 +1 @@
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package/dist/db/queries.d.ts

@@ -0,0 +1,106 @@
+export interface CypherQuery {
+    cypher: string;
+    params: Record<string, unknown>;
+}
+export declare function upsertRepository(data: {
+    path: string;
+    name: string;
+}): CypherQuery;
+export declare function upsertFile(data: {
+    path: string;
+    relativePath: string;
+    repoPath: string;
+    language: string;
+    hash: string;
+    lastModified: number;
+}): CypherQuery;
+export declare function upsertFunction(data: {
+    name: string;
+    filePath: string;
+    startLine: number;
+    endLine: number;
+    signature: string;
+    docstring: string | null;
+    snippet: string;
+    className?: string;
+}): CypherQuery;
+export declare function upsertClass(data: {
+    name: string;
+    filePath: string;
+    startLine: number;
+    endLine: number;
+    docstring: string | null;
+}): CypherQuery;
+export declare function upsertCallRelationship(data: {
+    callerName: string;
+    callerFilePath: string;
+    calleeName: string;
+}): CypherQuery;
+export declare function upsertImportRelationship(data: {
+    sourceFilePath: string;
+    targetFilePath: string;
+}): CypherQuery;
+export declare function upsertImportSymbol(data: {
+    sourceFilePath: string;
+    symbolName: string;
+}): CypherQuery;
+export declare function batchUpsertFiles(items: Array<{
+    path: string;
+    relativePath: string;
+    repoPath: string;
+    language: string;
+    hash: string;
+    lastModified: number;
+}>): CypherQuery;
+export declare function batchDeleteFileChildren(filePaths: string[]): CypherQuery;
+export declare function batchUpsertFunctions(items: Array<{
+    name: string;
+    filePath: string;
+    startLine: number;
+    endLine: number;
+    signature: string;
+    docstring: string | null;
+    snippet: string;
+    className: string | null;
+}>): CypherQuery;
+export declare function batchUpsertMethods(items: Array<{
+    name: string;
+    filePath: string;
+    startLine: number;
+    endLine: number;
+    signature: string;
+    docstring: string | null;
+    snippet: string;
+    className: string;
+}>): CypherQuery;
+export declare function batchUpsertClasses(items: Array<{
+    name: string;
+    filePath: string;
+    startLine: number;
+    endLine: number;
+    docstring: string | null;
+}>): CypherQuery;
+export declare function batchUpsertImportRelationships(items: Array<{
+    sourceFilePath: string;
+    targetFilePath: string;
+}>): CypherQuery;
+export declare function batchUpsertCallRelationships(items: Array<{
+    callerName: string;
+    callerFilePath: string;
+    calleeName: string;
+}>): CypherQuery;
+export declare function upsertRepositoryWithCommit(data: {
+    path: string;
+    name: string;
+    lastIndexedCommit: string;
+}): CypherQuery;
+export declare function getRepositoryCommit(data: {
+    path: string;
+}): CypherQuery;
+export declare function deleteFileAndRelationships(data: {
+    filePath: string;
+}): CypherQuery;
+export declare function getAllFilePathsUnderPrefix(data: {
+    pathPrefix: string;
+}): CypherQuery;
+export declare function batchDeleteOrphanFiles(filePaths: string[]): CypherQuery;

package/dist/db/queries.js

@@ -0,0 +1,247 @@
+// src/db/queries.ts
+export function upsertRepository(data) {
+    return {
+        cypher: `
+      MERGE (r:Repository {path: $path})
+      SET r.name = $name, r.lastIndexedAt = datetime()
+    `,
+        params: data,
+    };
+}
+export function upsertFile(data) {
+    return {
+        cypher: `
+      MATCH (r:Repository {path: $repoPath})
+      MERGE (f:File {path: $path})
+      SET f.relativePath = $relativePath,
+          f.language = $language,
+          f.hash = $hash,
+          f.lastModified = $lastModified
+      MERGE (r)-[:CONTAINS_FILE]->(f)
+    `,
+        params: data,
+    };
+}
+export function upsertFunction(data) {
+    if (data.className) {
+        return {
+            cypher: `
+        MATCH (c:Class {name: $className})<-[:CONTAINS]-(:File {path: $filePath})
+        MERGE (fn:Function {name: $name, filePath: $filePath, className: $className})
+        SET fn.startLine = $startLine,
+            fn.endLine = $endLine,
+            fn.signature = $signature,
+            fn.docstring = $docstring,
+            fn.snippet = $snippet
+        MERGE (c)-[:HAS_METHOD]->(fn)
+      `,
+            params: data,
+        };
+    }
+    return {
+        cypher: `
+      MATCH (f:File {path: $filePath})
+      MERGE (fn:Function {name: $name, filePath: $filePath})
+      ON CREATE SET fn.className = null
+      SET fn.startLine = $startLine,
+          fn.endLine = $endLine,
+          fn.signature = $signature,
+          fn.docstring = $docstring,
+          fn.snippet = $snippet
+      MERGE (f)-[:CONTAINS]->(fn)
+    `,
+        params: { ...data, className: null },
+    };
+}
+export function upsertClass(data) {
+    return {
+        cypher: `
+      MATCH (f:File {path: $filePath})
+      MERGE (c:Class {name: $name, filePath: $filePath})
+      SET c.startLine = $startLine,
+          c.endLine = $endLine,
+          c.docstring = $docstring
+      MERGE (f)-[:CONTAINS]->(c)
+    `,
+        params: data,
+    };
+}
+export function upsertCallRelationship(data) {
+    return {
+        cypher: `
+      MATCH (caller:Function {name: $callerName, filePath: $callerFilePath})
+      MATCH (callee:Function {name: $calleeName})
+      MERGE (caller)-[:CALLS]->(callee)
+    `,
+        params: data,
+    };
+}
+export function upsertImportRelationship(data) {
+    return {
+        cypher: `
+      MATCH (source:File {path: $sourceFilePath})
+      MATCH (target:File {path: $targetFilePath})
+      MERGE (source)-[:IMPORTS]->(target)
+    `,
+        params: data,
+    };
+}
+export function upsertImportSymbol(data) {
+    return {
+        cypher: `
+      MATCH (source:File {path: $sourceFilePath})
+      MATCH (symbol) WHERE (symbol:Function OR symbol:Class) AND symbol.name = $symbolName
+      MERGE (source)-[:IMPORTS_SYMBOL]->(symbol)
+    `,
+        params: data,
+    };
+}
+export function batchUpsertFiles(items) {
+    return {
+        cypher: `
+      UNWIND $items AS item
+      MATCH (r:Repository {path: item.repoPath})
+      MERGE (f:File {path: item.path})
+      SET f.relativePath = item.relativePath,
+          f.language = item.language,
+          f.hash = item.hash,
+          f.lastModified = item.lastModified
+      MERGE (r)-[:CONTAINS_FILE]->(f)
+    `,
+        params: { items },
+    };
+}
+export function batchDeleteFileChildren(filePaths) {
+    return {
+        cypher: `
+      UNWIND $filePaths AS fp
+      MATCH (f:File {path: fp})-[:CONTAINS]->(child)
+      OPTIONAL MATCH (child)-[:HAS_METHOD]->(method)
+      DETACH DELETE method, child
+    `,
+        params: { filePaths },
+    };
+}
+export function batchUpsertFunctions(items) {
+    return {
+        cypher: `
+      UNWIND $items AS item
+      MATCH (f:File {path: item.filePath})
+      MERGE (fn:Function {name: item.name, filePath: item.filePath})
+      ON CREATE SET fn.className = null
+      SET fn.startLine = item.startLine,
+          fn.endLine = item.endLine,
+          fn.signature = item.signature,
+          fn.docstring = item.docstring,
+          fn.snippet = item.snippet
+      MERGE (f)-[:CONTAINS]->(fn)
+    `,
+        params: { items },
+    };
+}
+export function batchUpsertMethods(items) {
+    return {
+        cypher: `
+      UNWIND $items AS item
+      MATCH (c:Class {name: item.className})<-[:CONTAINS]-(:File {path: item.filePath})
+      MERGE (fn:Function {name: item.name, filePath: item.filePath, className: item.className})
+      SET fn.startLine = item.startLine,
+          fn.endLine = item.endLine,
+          fn.signature = item.signature,
+          fn.docstring = item.docstring,
+          fn.snippet = item.snippet
+      MERGE (c)-[:HAS_METHOD]->(fn)
+    `,
+        params: { items },
+    };
+}
+export function batchUpsertClasses(items) {
+    return {
+        cypher: `
+      UNWIND $items AS item
+      MATCH (f:File {path: item.filePath})
+      MERGE (c:Class {name: item.name, filePath: item.filePath})
+      SET c.startLine = item.startLine,
+          c.endLine = item.endLine,
+          c.docstring = item.docstring
+      MERGE (f)-[:CONTAINS]->(c)
+    `,
+        params: { items },
+    };
+}
+export function batchUpsertImportRelationships(items) {
+    return {
+        cypher: `
+      UNWIND $items AS item
+      MATCH (source:File {path: item.sourceFilePath})
+      MATCH (target:File {path: item.targetFilePath})
+      MERGE (source)-[:IMPORTS]->(target)
+    `,
+        params: { items },
+    };
+}
+export function batchUpsertCallRelationships(items) {
+    return {
+        cypher: `
+      UNWIND $items AS item
+      MATCH (caller:Function {name: item.callerName, filePath: item.callerFilePath})
+      MATCH (callee:Function {name: item.calleeName})
+      MERGE (caller)-[:CALLS]->(callee)
+    `,
+        params: { items },
+    };
+}
+export function upsertRepositoryWithCommit(data) {
+    return {
+        cypher: `
+      MERGE (r:Repository {path: $path})
+      SET r.name = $name,
+          r.lastIndexedAt = datetime(),
+          r.lastIndexedCommit = $lastIndexedCommit
+    `,
+        params: data,
+    };
+}
+export function getRepositoryCommit(data) {
+    return {
+        cypher: `
+      MATCH (r:Repository {path: $path})
+      RETURN r.lastIndexedCommit AS lastIndexedCommit
+    `,
+        params: data,
+    };
+}
+export function deleteFileAndRelationships(data) {
+    return {
+        cypher: `
+      MATCH (f:File {path: $filePath})
+      OPTIONAL MATCH (f)-[:CONTAINS]->(child)
+      OPTIONAL MATCH (child)-[:HAS_METHOD]->(method)
+      DETACH DELETE method, child, f
+    `,
+        params: data,
+    };
+}
+export function getAllFilePathsUnderPrefix(data) {
+    return {
+        cypher: `
+      MATCH (f:File)
+      WHERE f.path STARTS WITH $pathPrefix
+      RETURN f.path AS path
+    `,
+        params: data,
+    };
+}
+export function batchDeleteOrphanFiles(filePaths) {
+    return {
+        cypher: `
+      UNWIND $filePaths AS fp
+      MATCH (f:File {path: fp})
+      OPTIONAL MATCH (f)-[:CONTAINS]->(child)
+      OPTIONAL MATCH (child)-[:HAS_METHOD]->(method)
+      DETACH DELETE method, child, f
+    `,
+        params: { filePaths },
+    };
+}
+//# sourceMappingURL=queries.js.map

package/dist/db/queries.js.map

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package/dist/db/schema.d.ts

@@ -0,0 +1,2 @@
+import type { DbConnection } from "./connection.js";
+export declare function setupSchema(db: DbConnection): Promise<void>;