research-copilot 0.1.0 → 0.1.2

package/app/out/renderer/assets/{sequenceDiagram-c5b8d532-CuUBu-x4.js → sequenceDiagram-c5b8d532-Bv7njQoz.js}

@@ -1,6 +1,6 @@
-import { n as getAccDescription, m as setAccDescription, q as setAccTitle, J as setDiagramTitle, H as getDiagramTitle, o as getAccTitle, r as getConfig, u as select, v as log$1, A as dist, w as configureSvgSize, x as assignWithDepth$1, C as common$1, z as sanitizeText$2, M as clear$1, O as utils, ad as hasKatex, ae as calculateMathMLDimensions, af as parseFontSize, ag as ZERO_WIDTH_SPACE, ah as renderKatexSanitized, ai as getConfig$1 } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
-import { a as drawBackgroundRect$1, d as drawRect$1, b as getTextObj$1, c as drawEmbeddedImage, e as drawImage, g as getNoteRect$1 } from "./svgDrawCommon-b86b1483-Bein03PD.js";
-import "./index-BqDyyRCx.js";
+import { n as getAccDescription, m as setAccDescription, q as setAccTitle, J as setDiagramTitle, H as getDiagramTitle, o as getAccTitle, r as getConfig, u as select, v as log$1, A as dist, w as configureSvgSize, x as assignWithDepth$1, C as common$1, z as sanitizeText$2, M as clear$1, O as utils, ad as hasKatex, ae as calculateMathMLDimensions, af as parseFontSize, ag as ZERO_WIDTH_SPACE, ah as renderKatexSanitized, ai as getConfig$1 } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
+import { a as drawBackgroundRect$1, d as drawRect$1, b as getTextObj$1, c as drawEmbeddedImage, e as drawImage, g as getNoteRect$1 } from "./svgDrawCommon-b86b1483-RWkoQoOd.js";
+import "./index-C_cgOzmt.js";
 var parser = function() {
   var o = function(k, v, o2, l) {
     for (o2 = o2 || {}, l = k.length; l--; o2[k[l]] = v)

package/app/out/renderer/assets/{stateDiagram-1ecb1508-BOU34Zp4.js → stateDiagram-1ecb1508-CmuiBQ0q.js}

@@ -1,9 +1,9 @@
-import { s as styles, d as db, p as parser$1 } from "./styles-ca3715f6-DgbNw99p.js";
-import { r as getConfig, u as select, v as log$1, w as configureSvgSize, C as common$1, R as curveBasis, O as utils } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
-import { G as Graph } from "./graph-DpC13d95.js";
-import { l as layout } from "./layout-ZeuHE_aY.js";
-import { l as line } from "./line-CAgaGl-S.js";
-import "./index-BqDyyRCx.js";
+import { s as styles, d as db, p as parser$1 } from "./styles-ca3715f6-BJWKCKia.js";
+import { r as getConfig, u as select, v as log$1, w as configureSvgSize, C as common$1, R as curveBasis, O as utils } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
+import { G as Graph } from "./graph-CXef_RHM.js";
+import { l as layout } from "./layout-CawlN23W.js";
+import { l as line } from "./line-C_cMMDTP.js";
+import "./index-C_cgOzmt.js";
 import "./array-DgktLKBx.js";
 import "./path-Cp2qmpkd.js";
 const drawStartState = (g) => g.append("circle").attr("class", "start-state").attr("r", getConfig().state.sizeUnit).attr("cx", getConfig().state.padding + getConfig().state.sizeUnit).attr("cy", getConfig().state.padding + getConfig().state.sizeUnit);

package/app/out/renderer/assets/{stateDiagram-v2-c2b004d7-BgRoffou.js → stateDiagram-v2-c2b004d7-DErEMYcv.js}

@@ -1,13 +1,13 @@
-import { s as styles, d as db, p as parser$1, D as DEFAULT_NESTED_DOC_DIR, a as DEFAULT_STATE_TYPE, b as DIVIDER_TYPE, S as STMT_RELATION, c as STMT_STATE } from "./styles-ca3715f6-DgbNw99p.js";
-import { G as Graph } from "./graph-DpC13d95.js";
-import { v as log$1, r as getConfig, u as select, O as utils, w as configureSvgSize, C as common$1 } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
-import { r as render } from "./index-5325376f-Bbs7Fbqr.js";
-import "./layout-ZeuHE_aY.js";
-import "./index-BqDyyRCx.js";
-import "./clone-CsnzsYXQ.js";
-import "./edges-96097737-CD0EvAZQ.js";
-import "./createText-1719965b-Cji7KN4K.js";
-import "./line-CAgaGl-S.js";
+import { s as styles, d as db, p as parser$1, D as DEFAULT_NESTED_DOC_DIR, a as DEFAULT_STATE_TYPE, b as DIVIDER_TYPE, S as STMT_RELATION, c as STMT_STATE } from "./styles-ca3715f6-BJWKCKia.js";
+import { G as Graph } from "./graph-CXef_RHM.js";
+import { v as log$1, r as getConfig, u as select, O as utils, w as configureSvgSize, C as common$1 } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
+import { r as render } from "./index-5325376f-0FtzFTBH.js";
+import "./layout-CawlN23W.js";
+import "./index-C_cgOzmt.js";
+import "./clone-uoV60hcB.js";
+import "./edges-96097737-CL7Yc4hz.js";
+import "./createText-1719965b-BaRII2sm.js";
+import "./line-C_cMMDTP.js";
 import "./array-DgktLKBx.js";
 import "./path-Cp2qmpkd.js";
 const SHAPE_STATE = "rect";

package/app/out/renderer/assets/{styles-b4e223ce-BMr9TPuj.js → styles-b4e223ce-CEjXkOYY.js}

@@ -1,4 +1,4 @@
-import { H as getDiagramTitle, J as setDiagramTitle, m as setAccDescription, n as getAccDescription, o as getAccTitle, q as setAccTitle, r as getConfig, C as common$1, O as utils, v as log$1, M as clear$1, z as sanitizeText$2, aj as parseGenericTypes, u as select } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
+import { H as getDiagramTitle, J as setDiagramTitle, m as setAccDescription, n as getAccDescription, o as getAccTitle, q as setAccTitle, r as getConfig, C as common$1, O as utils, v as log$1, M as clear$1, z as sanitizeText$2, aj as parseGenericTypes, u as select } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
 var parser = function() {
   var o = function(k, v, o2, l) {
     for (o2 = o2 || {}, l = k.length; l--; o2[k[l]] = v)

package/app/out/renderer/assets/{styles-ca3715f6-DgbNw99p.js → styles-ca3715f6-BJWKCKia.js}

@@ -1,4 +1,4 @@
-import { H as getDiagramTitle, J as setDiagramTitle, m as setAccDescription, n as getAccDescription, q as setAccTitle, o as getAccTitle, r as getConfig, C as common$1, v as log$1, M as clear$1, ao as generateId } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
+import { H as getDiagramTitle, J as setDiagramTitle, m as setAccDescription, n as getAccDescription, q as setAccTitle, o as getAccTitle, r as getConfig, C as common$1, v as log$1, M as clear$1, ao as generateId } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
 var parser = function() {
   var o = function(k, v, o2, l) {
     for (o2 = o2 || {}, l = k.length; l--; o2[k[l]] = v)

package/app/out/renderer/assets/{styles-d45a18b0-DtRYKYKf.js → styles-d45a18b0-BrhRky7i.js}

@@ -1,7 +1,7 @@
-import { aN as Selection, aO as root, aP as array, aQ as isPlainObject, aR as isFunction, v as log$1, r as getConfig, u as select, O as utils, ak as setupGraphViewbox$1, al as getStylesFromArray, am as interpolateToCurve, an as curveLinear, ah as renderKatexSanitized, C as common$1, S as evaluate, at as rgba } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
-import { G as Graph } from "./graph-DpC13d95.js";
-import { r as render } from "./index-5325376f-Bbs7Fbqr.js";
-import { c as channel } from "./channel-ZAmhHE3g.js";
+import { aN as Selection, aO as root, aP as array, aQ as isPlainObject, aR as isFunction, v as log$1, r as getConfig, u as select, O as utils, ak as setupGraphViewbox$1, al as getStylesFromArray, am as interpolateToCurve, an as curveLinear, ah as renderKatexSanitized, C as common$1, S as evaluate, at as rgba } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
+import { G as Graph } from "./graph-CXef_RHM.js";
+import { r as render } from "./index-5325376f-0FtzFTBH.js";
+import { c as channel } from "./channel-xtutyETs.js";
 function selectAll(selector) {
   return typeof selector === "string" ? new Selection([document.querySelectorAll(selector)], [document.documentElement]) : new Selection([array(selector)], root);
 }

package/app/out/renderer/assets/{svgDrawCommon-b86b1483-Bein03PD.js → svgDrawCommon-b86b1483-RWkoQoOd.js}

@@ -1,4 +1,4 @@
-import { G as lineBreakRegex, A as dist } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
+import { G as lineBreakRegex, A as dist } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
 const drawRect = (element, rectData) => {
   const rectElement = element.append("rect");
   rectElement.attr("x", rectData.x);

package/app/out/renderer/assets/{timeline-definition-faaaa080-BlWpLE_4.js → timeline-definition-faaaa080-25xmyyis.js}

@@ -1,6 +1,6 @@
-import { r as getConfig, v as log$1, u as select, ak as setupGraphViewbox$1, ap as commonDb, aq as isDark, ar as lighten, as as darken, M as clear$1 } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
-import { a as arc } from "./arc-J47ePHZ2.js";
-import "./index-BqDyyRCx.js";
+import { r as getConfig, v as log$1, u as select, ak as setupGraphViewbox$1, ap as commonDb, aq as isDark, ar as lighten, as as darken, M as clear$1 } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
+import { a as arc } from "./arc-BR5G9xaE.js";
+import "./index-C_cgOzmt.js";
 import "./path-Cp2qmpkd.js";
 var parser = function() {
   var o = function(k, v, o2, l) {

package/app/out/renderer/assets/{xychartDiagram-f5964ef8-Bhga-YXm.js → xychartDiagram-f5964ef8-DwBkod9W.js}

@@ -1,10 +1,10 @@
-import { m as setAccDescription, n as getAccDescription, H as getDiagramTitle, J as setDiagramTitle, o as getAccTitle, q as setAccTitle, v as log$1, Z as selectSvgElement, w as configureSvgSize, M as clear$1, ai as getConfig$1, z as sanitizeText$2, aM as cleanAndMerge, ab as defaultConfig$2, ac as getThemeVariables$2 } from "./MilkdownMarkdownEditor-bLPxrCVb.js";
-import { a as computeDimensionOfText } from "./createText-1719965b-Cji7KN4K.js";
+import { m as setAccDescription, n as getAccDescription, H as getDiagramTitle, J as setDiagramTitle, o as getAccTitle, q as setAccTitle, v as log$1, Z as selectSvgElement, w as configureSvgSize, M as clear$1, ai as getConfig$1, z as sanitizeText$2, aM as cleanAndMerge, ab as defaultConfig$2, ac as getThemeVariables$2 } from "./MilkdownMarkdownEditor-CCiFOpuq.js";
+import { a as computeDimensionOfText } from "./createText-1719965b-BaRII2sm.js";
 import { i as initRange } from "./init-ZxktEp_H.js";
 import { o as ordinal } from "./ordinal-DSZU4PqD.js";
-import { l as linear } from "./linear-DIg7lTe1.js";
-import { l as line } from "./line-CAgaGl-S.js";
-import "./index-BqDyyRCx.js";
+import { l as linear } from "./linear-CnzgpVoT.js";
+import { l as line } from "./line-C_cMMDTP.js";
+import "./index-C_cgOzmt.js";
 import "./array-DgktLKBx.js";
 import "./path-Cp2qmpkd.js";
 function range(start, stop, step) {

package/app/out/renderer/index.html

@@ -4,7 +4,7 @@
     <meta charset="UTF-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
     <title>Research Pilot</title>
-    <script type="module" crossorigin src="./assets/index-BqDyyRCx.js"></script>
+    <script type="module" crossorigin src="./assets/index-C_cgOzmt.js"></script>
     <link rel="stylesheet" crossorigin href="./assets/index-C-_uCjZJ.css">
   </head>
   <body class="overflow-hidden">

package/bin/cli.mjs

@@ -4,7 +4,6 @@
  * CLI entry point for Research Copilot.
  *
  * Usage:
- *   npx research-copilot            # Run directly
  *   npm i -g research-copilot       # Install globally
  *   research-copilot                # Then run anywhere
  */
@@ -13,21 +12,23 @@ import { spawn } from 'child_process'
 import { createRequire } from 'module'
 import { fileURLToPath } from 'url'
 import { dirname, join } from 'path'
-import { existsSync } from 'fs'
+import { existsSync, chmodSync, readdirSync } from 'fs'
 
 const __filename = fileURLToPath(import.meta.url)
 const __dirname = dirname(__filename)
 const require = createRequire(import.meta.url)
 
-// Resolve the Electron binary from this package's node_modules
+// Resolve the Electron binary
 let electronPath
 try {
-  electronPath = require('electron')
+  electronPath = String(require('electron'))
 } catch {
-  console.error(
-    'Error: Electron is not installed.\n' +
-    'Run: npm install\n'
-  )
+  console.error('Error: Electron is not installed. Run: npm install')
+  process.exit(1)
+}
+
+if (!existsSync(electronPath)) {
+  console.error(`Error: Electron binary not found at ${electronPath}`)
   process.exit(1)
 }
 
@@ -36,21 +37,45 @@ const appDir = join(__dirname, '..', 'app')
 const mainEntry = join(appDir, 'out', 'main', 'index.mjs')
 
 if (!existsSync(mainEntry)) {
-  console.error(
-    'Error: App has not been built yet.\n' +
-    'Run: npm run build\n'
-  )
+  console.error(`Error: App not built. Expected: ${mainEntry}`)
   process.exit(1)
 }
 
+// Fix node-pty spawn-helper permissions (npm strips executable bit during pack/install)
+const ptyPrebuilds = join(__dirname, '..', 'node_modules', 'node-pty', 'prebuilds')
+if (existsSync(ptyPrebuilds)) {
+  try {
+    for (const platform of readdirSync(ptyPrebuilds)) {
+      const helper = join(ptyPrebuilds, platform, 'spawn-helper')
+      if (existsSync(helper)) chmodSync(helper, 0o755)
+    }
+  } catch { /* best-effort */ }
+}
+
+console.log('Starting Research Copilot...')
+
+// Ensure Electron's main process can resolve npm dependencies (e.g. node-pty)
+// that live in the package root's node_modules, not inside app/.
+const pkgNodeModules = join(__dirname, '..', 'node_modules')
+const nodePath = process.env.NODE_PATH
+  ? `${pkgNodeModules}:${process.env.NODE_PATH}`
+  : pkgNodeModules
+
 // Launch Electron with the app directory
-const child = spawn(String(electronPath), [appDir], {
-  stdio: 'inherit',
-  env: { ...process.env },
+const child = spawn(electronPath, [appDir], {
+  stdio: ['inherit', 'inherit', 'inherit'],
+  env: { ...process.env, NODE_PATH: nodePath },
+})
+
+child.on('close', (code) => {
+  process.exit(code ?? 0)
 })
 
-child.on('close', (code) => process.exit(code ?? 0))
 child.on('error', (err) => {
   console.error('Failed to start Electron:', err.message)
   process.exit(1)
 })
+
+// Forward signals to Electron
+process.on('SIGINT', () => child.kill('SIGINT'))
+process.on('SIGTERM', () => child.kill('SIGTERM'))

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "research-copilot",
-  "version": "0.1.0",
+  "version": "0.1.2",
   "description": "AI-powered research assistant for scientists — literature search, data analysis, academic writing, and project management",
   "type": "module",
   "bin": {