repomemory 0.1.0 → 0.2.0

package/dist/lib/search.js

@@ -1,17 +1,50 @@
-import Database from "better-sqlite3";
+import { readFileSync, writeFileSync, existsSync } from "fs";
 import { join } from "path";
+let initSqlJsPromise = null;
+async function getSqlJs() {
+    if (!initSqlJsPromise) {
+        initSqlJsPromise = import("sql.js").then((mod) => {
+            const initSqlJs = mod.default;
+            return initSqlJs();
+        });
+    }
+    return initSqlJsPromise;
+}
 export class SearchIndex {
-    db;
+    db = null;
+    dbPath;
     store;
+    initialized = false;
     constructor(contextDir, store) {
-        const dbPath = join(contextDir, ".search.db");
-        this.db = new Database(dbPath);
+        this.dbPath = join(contextDir, ".search.db");
         this.store = store;
-        this.init();
     }
-    init() {
-        this.db.pragma("journal_mode = WAL");
-        this.db.exec(`
+    async ensureDb() {
+        if (this.db)
+            return this.db;
+        const SQL = await getSqlJs();
+        if (existsSync(this.dbPath)) {
+            try {
+                const buffer = readFileSync(this.dbPath);
+                this.db = new SQL.Database(buffer);
+            }
+            catch {
+                this.db = new SQL.Database();
+            }
+        }
+        else {
+            this.db = new SQL.Database();
+        }
+        if (!this.initialized) {
+            this.initSchema();
+            this.initialized = true;
+        }
+        return this.db;
+    }
+    initSchema() {
+        if (!this.db)
+            return;
+        this.db.run(`
       CREATE TABLE IF NOT EXISTS documents (
         id INTEGER PRIMARY KEY AUTOINCREMENT,
         category TEXT NOT NULL,
@@ -23,7 +56,7 @@ export class SearchIndex {
         UNIQUE(category, filename)
       )
     `);
-        this.db.exec(`
+        this.db.run(`
       CREATE VIRTUAL TABLE IF NOT EXISTS documents_fts USING fts5(
         title,
         content,
@@ -33,20 +66,19 @@ export class SearchIndex {
         tokenize='porter unicode61'
       )
     `);
-        // Triggers to keep FTS in sync
-        this.db.exec(`
+        this.db.run(`
       CREATE TRIGGER IF NOT EXISTS documents_ai AFTER INSERT ON documents BEGIN
         INSERT INTO documents_fts(rowid, title, content, category)
         VALUES (new.id, new.title, new.content, new.category);
       END
     `);
-        this.db.exec(`
+        this.db.run(`
       CREATE TRIGGER IF NOT EXISTS documents_ad AFTER DELETE ON documents BEGIN
         INSERT INTO documents_fts(documents_fts, rowid, title, content, category)
         VALUES ('delete', old.id, old.title, old.content, old.category);
       END
     `);
-        this.db.exec(`
+        this.db.run(`
       CREATE TRIGGER IF NOT EXISTS documents_au AFTER UPDATE ON documents BEGIN
         INSERT INTO documents_fts(documents_fts, rowid, title, content, category)
         VALUES ('delete', old.id, old.title, old.content, old.category);
@@ -55,38 +87,53 @@ export class SearchIndex {
       END
     `);
     }
-    rebuild() {
-        // Clear existing data
-        this.db.exec("DELETE FROM documents");
+    async rebuild() {
+        const db = await this.ensureDb();
+        db.run("DELETE FROM documents");
         const entries = this.store.listEntries();
-        const insert = this.db.prepare(`
-      INSERT OR REPLACE INTO documents (category, filename, title, content, relative_path, updated_at)
-      VALUES (?, ?, ?, ?, ?, ?)
-    `);
-        const tx = this.db.transaction((entries) => {
-            for (const entry of entries) {
-                insert.run(entry.category, entry.filename, entry.title, entry.content, entry.relativePath, entry.lastModified.toISOString());
-            }
-        });
-        tx(entries);
+        for (const entry of entries) {
+            db.run(`INSERT OR REPLACE INTO documents (category, filename, title, content, relative_path, updated_at)
+         VALUES (?, ?, ?, ?, ?, ?)`, [
+                entry.category,
+                entry.filename,
+                entry.title,
+                entry.content,
+                entry.relativePath,
+                entry.lastModified.toISOString(),
+            ]);
+        }
+        this.save();
+    }
+    async indexEntry(entry) {
+        const db = await this.ensureDb();
+        // Upsert: delete then insert to trigger FTS sync
+        db.run("DELETE FROM documents WHERE category = ? AND filename = ?", [entry.category, entry.filename]);
+        db.run(`INSERT INTO documents (category, filename, title, content, relative_path, updated_at)
+       VALUES (?, ?, ?, ?, ?, ?)`, [
+            entry.category,
+            entry.filename,
+            entry.title,
+            entry.content,
+            entry.relativePath,
+            entry.lastModified.toISOString(),
+        ]);
+        this.save();
     }
-    indexEntry(entry) {
-        this.db
-            .prepare(`
-      INSERT OR REPLACE INTO documents (category, filename, title, content, relative_path, updated_at)
-      VALUES (?, ?, ?, ?, ?, ?)
-    `)
-            .run(entry.category, entry.filename, entry.title, entry.content, entry.relativePath, entry.lastModified.toISOString());
+    async removeEntry(category, filename) {
+        const db = await this.ensureDb();
+        db.run("DELETE FROM documents WHERE category = ? AND filename = ?", [category, filename]);
+        this.save();
     }
-    search(query, category, limit = 10) {
-        // Escape special FTS5 characters
-        const escapedQuery = query
+    async search(query, category, limit = 10) {
+        const db = await this.ensureDb();
+        // Build FTS5 query: use AND semantics (implicit AND in FTS5)
+        const terms = query
             .replace(/['"]/g, "")
             .split(/\s+/)
             .filter(Boolean)
             .map((term) => `"${term}"`)
-            .join(" OR ");
-        if (!escapedQuery)
+            .join(" ");
+        if (!terms)
             return [];
         let sql = `
       SELECT
@@ -100,27 +147,51 @@ export class SearchIndex {
       JOIN documents d ON d.id = documents_fts.rowid
       WHERE documents_fts MATCH ?
     `;
-        const params = [escapedQuery];
+        const params = [terms];
         if (category) {
             sql += " AND d.category = ?";
             params.push(category);
         }
         sql += " ORDER BY rank LIMIT ?";
         params.push(limit);
-        const rows = this.db.prepare(sql).all(...params);
-        return rows.map((row) => ({
-            category: row.category,
-            filename: row.filename,
-            title: row.title,
-            snippet: this.extractSnippet(row.content, query),
-            score: row.score,
-            relativePath: row.relative_path,
+        try {
+            const results = db.exec(sql, params);
+            if (!results.length || !results[0].values.length) {
+                // Fallback: try OR semantics if AND returned nothing
+                const orTerms = query
+                    .replace(/['"]/g, "")
+                    .split(/\s+/)
+                    .filter(Boolean)
+                    .map((term) => `"${term}"`)
+                    .join(" OR ");
+                if (orTerms !== terms) {
+                    params[0] = orTerms;
+                    const orResults = db.exec(sql, params);
+                    if (orResults.length && orResults[0].values.length) {
+                        return this.mapResults(orResults[0], query);
+                    }
+                }
+                return [];
+            }
+            return this.mapResults(results[0], query);
+        }
+        catch {
+            return [];
+        }
+    }
+    mapResults(result, query) {
+        return result.values.map((row) => ({
+            category: row[0],
+            filename: row[1],
+            title: row[2],
+            snippet: this.extractSnippet(row[3], query),
+            score: row[5],
+            relativePath: row[4],
         }));
     }
     extractSnippet(content, query, maxLength = 500) {
         const terms = query.toLowerCase().split(/\s+/).filter(Boolean);
         const lines = content.split("\n");
-        // Find lines containing query terms
         const matchingLines = [];
         for (let i = 0; i < lines.length; i++) {
             const lower = lines[i].toLowerCase();
@@ -132,16 +203,30 @@ export class SearchIndex {
         if (matchingLines.length === 0) {
             return content.slice(0, maxLength);
         }
-        // Sort by match count, take best matches
         matchingLines.sort((a, b) => b.matchCount - a.matchCount);
-        // Build snippet from best matching region
         const bestMatch = matchingLines[0];
         const start = Math.max(0, bestMatch.index - 2);
         const end = Math.min(lines.length, bestMatch.index + 5);
         return lines.slice(start, end).join("\n").slice(0, maxLength);
     }
+    save() {
+        if (!this.db)
+            return;
+        try {
+            const data = this.db.export();
+            writeFileSync(this.dbPath, Buffer.from(data));
+        }
+        catch {
+            // Silently fail — search degradation is acceptable
+        }
+    }
     close() {
-        this.db.close();
+        if (this.db) {
+            this.save();
+            this.db.close();
+            this.db = null;
+        }
+        this.initialized = false;
     }
 }
 //# sourceMappingURL=search.js.map

package/dist/lib/search.js.map

@@ -1 +1 @@
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+{"version":3,"file":"search.js","sourceRoot":"","sources":["../../src/lib/search.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,IAAI,CAAC;AAC7D,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAC;AAwB5B,IAAI,gBAAgB,GAAgC,IAAI,CAAC;AAEzD,KAAK,UAAU,QAAQ;IACrB,IAAI,CAAC,gBAAgB,EAAE,CAAC;QACtB,gBAAgB,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE;YAC/C,MAAM,SAAS,GAAG,GAAG,CAAC,OAAO,CAAC;YAC9B,OAAO,SAAS,EAAE,CAAC;QACrB,CAAC,CAAC,CAAC;IACL,CAAC;IACD,OAAO,gBAAgB,CAAC;AAC1B,CAAC;AAED,MAAM,OAAO,WAAW;IACd,EAAE,GAAyB,IAAI,CAAC;IAChC,MAAM,CAAS;IACf,KAAK,CAAe;IACpB,WAAW,GAAG,KAAK,CAAC;IAE5B,YAAY,UAAkB,EAAE,KAAmB;QACjD,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,UAAU,EAAE,YAAY,CAAC,CAAC;QAC7C,IAAI,CAAC,KAAK,GAAG,KAAK,CAAC;IACrB,CAAC;IAEO,KAAK,CAAC,QAAQ;QACpB,IAAI,IAAI,CAAC,EAAE;YAAE,OAAO,IAAI,CAAC,EAAE,CAAC;QAE5B,MAAM,GAAG,GAAG,MAAM,QAAQ,EAAE,CAAC;QAE7B,IAAI,UAAU,CAAC,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC;YAC5B,IAAI,CAAC;gBACH,MAAM,MAAM,GAAG,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;gBACzC,IAAI,CAAC,EAAE,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;YACrC,CAAC;YAAC,MAAM,CAAC;gBACP,IAAI,CAAC,EAAE,GAAG,IAAI,GAAG,CAAC,QAAQ,EAAE,CAAC;YAC/B,CAAC;QACH,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,EAAE,GAAG,IAAI,GAAG,CAAC,QAAQ,EAAE,CAAC;QAC/B,CAAC;QAED,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC;YACtB,IAAI,CAAC,UAAU,EAAE,CAAC;YAClB,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC;QAC1B,CAAC;QAED,OAAO,IAAI,CAAC,EAAE,CAAC;IACjB,CAAC;IAEO,UAAU;QAChB,IAAI,CAAC,IAAI,CAAC,EAAE;YAAE,OAAO;QAErB,IAAI,CAAC,EAAE,CAAC,GAAG,CAAC;;;;;;;;;;;KAWX,CAAC,CAAC;QAEH,IAAI,CAAC,EAAE,CAAC,GAAG,CAAC;;;;;;;;;KASX,CAAC,CAAC;QAEH,IAAI,CAAC,EAAE,CAAC,GAAG,CAAC;;;;;KAKX,CAAC,CAAC;QAEH,IAAI,CAAC,EAAE,CAAC,GAAG,CAAC;;;;;KAKX,CAAC,CAAC;QAEH,IAAI,CAAC,EAAE,CAAC,GAAG,CAAC;;;;;;;KAOX,CAAC,CAAC;IACL,CAAC;IAED,KAAK,CAAC,OAAO;QACX,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC;QAEjC,EAAE,CAAC,GAAG,CAAC,uBAAuB,CAAC,CAAC;QAEhC,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC;QACzC,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;YAC5B,EAAE,CAAC,GAAG,CACJ;mCAC2B,EAC3B;gBACE,KAAK,CAAC,QAAQ;gBACd,KAAK,CAAC,QAAQ;gBACd,KAAK,CAAC,KAAK;gBACX,KAAK,CAAC,OAAO;gBACb,KAAK,CAAC,YAAY;gBAClB,KAAK,CAAC,YAAY,CAAC,WAAW,EAAE;aACjC,CACF,CAAC;QACJ,CAAC;QAED,IAAI,CAAC,IAAI,EAAE,CAAC;IACd,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,KAAmB;QAClC,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC;QAEjC,iDAAiD;QACjD,EAAE,CAAC,GAAG,CACJ,2DAA2D,EAC3D,CAAC,KAAK,CAAC,QAAQ,EAAE,KAAK,CAAC,QAAQ,CAAC,CACjC,CAAC;QAEF,EAAE,CAAC,GAAG,CACJ;iCAC2B,EAC3B;YACE,KAAK,CAAC,QAAQ;YACd,KAAK,CAAC,QAAQ;YACd,KAAK,CAAC,KAAK;YACX,KAAK,CAAC,OAAO;YACb,KAAK,CAAC,YAAY;YAClB,KAAK,CAAC,YAAY,CAAC,WAAW,EAAE;SACjC,CACF,CAAC;QAEF,IAAI,CAAC,IAAI,EAAE,CAAC;IACd,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,QAAgB,EAAE,QAAgB;QAClD,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC;QACjC,EAAE,CAAC,GAAG,CACJ,2DAA2D,EAC3D,CAAC,QAAQ,EAAE,QAAQ,CAAC,CACrB,CAAC;QACF,IAAI,CAAC,IAAI,EAAE,CAAC;IACd,CAAC;IAED,KAAK,CAAC,MAAM,CAAC,KAAa,EAAE,QAAiB,EAAE,QAAgB,EAAE;QAC/D,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,CAAC;QAEjC,6DAA6D;QAC7D,MAAM,KAAK,GAAG,KAAK;aAChB,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;aACpB,KAAK,CAAC,KAAK,CAAC;aACZ,MAAM,CAAC,OAAO,CAAC;aACf,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,IAAI,GAAG,CAAC;aAC1B,IAAI,CAAC,GAAG,CAAC,CAAC;QAEb,IAAI,CAAC,KAAK;YAAE,OAAO,EAAE,CAAC;QAEtB,IAAI,GAAG,GAAG;;;;;;;;;;;KAWT,CAAC;QAEF,MAAM,MAAM,GAAc,CAAC,KAAK,CAAC,CAAC;QAElC,IAAI,QAAQ,EAAE,CAAC;YACb,GAAG,IAAI,qBAAqB,CAAC;YAC7B,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QACxB,CAAC;QAED,GAAG,IAAI,wBAAwB,CAAC;QAChC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAEnB,IAAI,CAAC;YACH,MAAM,OAAO,GAAG,EAAE,CAAC,IAAI,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;YACrC,IAAI,CAAC,OAAO,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC;gBACjD,qDAAqD;gBACrD,MAAM,OAAO,GAAG,KAAK;qBAClB,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;qBACpB,KAAK,CAAC,KAAK,CAAC;qBACZ,MAAM,CAAC,OAAO,CAAC;qBACf,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,IAAI,GAAG,CAAC;qBAC1B,IAAI,CAAC,MAAM,CAAC,CAAC;gBAEhB,IAAI,OAAO,KAAK,KAAK,EAAE,CAAC;oBACtB,MAAM,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC;oBACpB,MAAM,SAAS,GAAG,EAAE,CAAC,IAAI,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;oBACvC,IAAI,SAAS,CAAC,MAAM,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC;wBACnD,OAAO,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;oBAC9C,CAAC;gBACH,CAAC;gBACD,OAAO,EAAE,CAAC;YACZ,CAAC;YAED,OAAO,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;QAC5C,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,EAAE,CAAC;QACZ,CAAC;IACH,CAAC;IAEO,UAAU,CAChB,MAAkD,EAClD,KAAa;QAEb,OAAO,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;YACjC,QAAQ,EAAE,GAAG,CAAC,CAAC,CAAW;YAC1B,QAAQ,EAAE,GAAG,CAAC,CAAC,CAAW;YAC1B,KAAK,EAAE,GAAG,CAAC,CAAC,CAAW;YACvB,OAAO,EAAE,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAW,EAAE,KAAK,CAAC;YACrD,KAAK,EAAE,GAAG,CAAC,CAAC,CAAW;YACvB,YAAY,EAAE,GAAG,CAAC,CAAC,CAAW;SAC/B,CAAC,CAAC,CAAC;IACN,CAAC;IAEO,cAAc,CAAC,OAAe,EAAE,KAAa,EAAE,YAAoB,GAAG;QAC5E,MAAM,KAAK,GAAG,KAAK,CAAC,WAAW,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QAC/D,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QAElC,MAAM,aAAa,GAA0D,EAAE,CAAC;QAEhF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EA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package/dist/mcp/server.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/mcp/server.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAE1D,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,iBAAiB,GACxB,OAAO,CAAC,IAAI,CAAC,CAwXf"}
+{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/mcp/server.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAI1D,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,iBAAiB,GACxB,OAAO,CAAC,IAAI,CAAC,CAgdf"}

package/dist/mcp/server.js

@@ -3,14 +3,14 @@ import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js"
 import { CallToolRequestSchema, ListToolsRequestSchema, ListResourcesRequestSchema, ReadResourceRequestSchema, } from "@modelcontextprotocol/sdk/types.js";
 import { ContextStore } from "../lib/context-store.js";
 import { SearchIndex } from "../lib/search.js";
+const VALID_CATEGORIES = ["facts", "decisions", "regressions", "sessions", "changelog"];
 export async function startMcpServer(repoRoot, config) {
     const store = new ContextStore(repoRoot, config);
     let searchIndex = null;
-    // Initialize search index if .context exists
     if (store.exists()) {
         try {
             searchIndex = new SearchIndex(store.path, store);
-            searchIndex.rebuild();
+            await searchIndex.rebuild();
         }
         catch (e) {
             console.error("Warning: Could not initialize search index:", e);
@@ -18,7 +18,7 @@ export async function startMcpServer(repoRoot, config) {
     }
     const server = new Server({
         name: "repomemory",
-        version: "0.1.0",
+        version: "0.2.0",
     }, {
         capabilities: {
             tools: {},
@@ -31,7 +31,7 @@ export async function startMcpServer(repoRoot, config) {
             tools: [
                 {
                     name: "context_search",
-                    description: "Search the repository's persistent knowledge base. Returns relevant facts, decisions, regressions, and session notes. Use this at the start of a task to find relevant context, or when you need to understand why something is the way it is.",
+                    description: "Search the repository's persistent knowledge base. Returns relevant facts, decisions, regressions, and session notes. Use this FIRST at the start of every task to find relevant context, or when you need to understand why something is the way it is. This prevents re-discovering architecture and re-debating past decisions.",
                     inputSchema: {
                         type: "object",
                         properties: {
@@ -41,7 +41,7 @@ export async function startMcpServer(repoRoot, config) {
                             },
                             category: {
                                 type: "string",
-                                enum: ["facts", "decisions", "regressions", "sessions", "changelog"],
+                                enum: VALID_CATEGORIES,
                                 description: "Optional: filter results to a specific category. Omit to search all.",
                             },
                             limit: {
@@ -60,7 +60,7 @@ export async function startMcpServer(repoRoot, config) {
                         properties: {
                             category: {
                                 type: "string",
-                                enum: ["facts", "decisions", "regressions", "sessions", "changelog"],
+                                enum: VALID_CATEGORIES,
                                 description: `Category for the knowledge:
 - facts: Architecture, patterns, how things work
 - decisions: Why something was chosen (include alternatives considered)
@@ -84,15 +84,34 @@ export async function startMcpServer(repoRoot, config) {
                         required: ["category", "filename", "content"],
                     },
                 },
+                {
+                    name: "context_delete",
+                    description: "Delete a knowledge entry from the repository context. Use this to remove stale or incorrect information. Knowledge quality matters more than quantity — prune aggressively.",
+                    inputSchema: {
+                        type: "object",
+                        properties: {
+                            category: {
+                                type: "string",
+                                enum: VALID_CATEGORIES,
+                                description: "The category of the entry to delete.",
+                            },
+                            filename: {
+                                type: "string",
+                                description: "The filename to delete (with or without .md extension).",
+                            },
+                        },
+                        required: ["category", "filename"],
+                    },
+                },
                 {
                     name: "context_list",
-                    description: "List all knowledge entries in the repository context, optionally filtered by category. Returns filenames and titles for browsing.",
+                    description: "List all knowledge entries in the repository context, optionally filtered by category. Returns filenames, titles, and age for browsing. Use this to understand what knowledge already exists before writing new entries.",
                     inputSchema: {
                         type: "object",
                         properties: {
                             category: {
                                 type: "string",
-                                enum: ["facts", "decisions", "regressions", "sessions", "changelog"],
+                                enum: VALID_CATEGORIES,
                                 description: "Optional: filter to a specific category.",
                             },
                         },
@@ -124,22 +143,29 @@ export async function startMcpServer(repoRoot, config) {
         switch (name) {
             case "context_search": {
                 const { query, category, limit = 5 } = args;
+                // Validate category if provided
+                if (category && !VALID_CATEGORIES.includes(category)) {
+                    return {
+                        content: [{
+                                type: "text",
+                                text: `Invalid category: ${category}. Valid categories: ${VALID_CATEGORIES.join(", ")}`,
+                            }],
+                        isError: true,
+                    };
+                }
                 if (!store.exists()) {
                     return {
-                        content: [
-                            {
+                        content: [{
                                 type: "text",
                                 text: "No .context/ directory found. Run `repomemory init && repomemory analyze` to set up.",
-                            },
-                        ],
+                            }],
                     };
                 }
-                // Rebuild index if needed
                 if (!searchIndex) {
                     searchIndex = new SearchIndex(store.path, store);
-                    searchIndex.rebuild();
+                    await searchIndex.rebuild();
                 }
-                const results = searchIndex.search(query, category, limit);
+                const results = await searchIndex.search(query, category, limit);
                 if (results.length === 0) {
                     // Fallback to simple text search
                     const entries = store.listEntries(category);
@@ -150,12 +176,10 @@ export async function startMcpServer(repoRoot, config) {
                         .slice(0, limit);
                     if (matched.length === 0) {
                         return {
-                            content: [
-                                {
+                            content: [{
                                     type: "text",
                                     text: `No results found for "${query}"${category ? ` in ${category}` : ""}. Try a different query or browse with context_list.`,
-                                },
-                            ],
+                                }],
                         };
                     }
                     const text = matched
@@ -170,6 +194,16 @@ export async function startMcpServer(repoRoot, config) {
             }
             case "context_write": {
                 const { category, filename, content, append = false } = args;
+                // Validate category
+                if (!VALID_CATEGORIES.includes(category)) {
+                    return {
+                        content: [{
+                                type: "text",
+                                text: `Invalid category: ${category}. Valid categories: ${VALID_CATEGORIES.join(", ")}`,
+                            }],
+                        isError: true,
+                    };
+                }
                 if (!store.exists()) {
                     store.scaffold();
                 }
@@ -180,40 +214,79 @@ export async function startMcpServer(repoRoot, config) {
                 else {
                     relativePath = store.writeEntry(category, filename, content);
                 }
-                // Update search index
+                // Incremental index update (not full rebuild)
                 if (searchIndex) {
-                    searchIndex.rebuild();
+                    const entries = store.listEntries(category);
+                    const entry = entries.find((e) => e.relativePath === relativePath || e.filename === filename + ".md");
+                    if (entry) {
+                        await searchIndex.indexEntry(entry);
+                    }
                 }
                 return {
-                    content: [
-                        {
+                    content: [{
                             type: "text",
-                            text: `✓ Written to ${relativePath}${append ? " (appended)" : ""}. This knowledge will persist across sessions.`,
-                        },
-                    ],
+                            text: `\u2713 Written to ${relativePath}${append ? " (appended)" : ""}. This knowledge will persist across sessions.`,
+                        }],
+                };
+            }
+            case "context_delete": {
+                const { category, filename } = args;
+                if (!VALID_CATEGORIES.includes(category)) {
+                    return {
+                        content: [{
+                                type: "text",
+                                text: `Invalid category: ${category}. Valid categories: ${VALID_CATEGORIES.join(", ")}`,
+                            }],
+                        isError: true,
+                    };
+                }
+                const fname = filename.endsWith(".md") ? filename : filename + ".md";
+                const deleted = store.deleteEntry(category, fname);
+                if (!deleted) {
+                    return {
+                        content: [{
+                                type: "text",
+                                text: `File not found: ${category}/${fname}. Use context_list to see available files.`,
+                            }],
+                    };
+                }
+                // Remove from search index
+                if (searchIndex) {
+                    await searchIndex.removeEntry(category, fname);
+                }
+                return {
+                    content: [{
+                            type: "text",
+                            text: `\u2713 Deleted ${category}/${fname}. Stale knowledge removed.`,
+                        }],
                 };
             }
             case "context_list": {
                 const { category } = (args || {});
+                if (category && !VALID_CATEGORIES.includes(category)) {
+                    return {
+                        content: [{
+                                type: "text",
+                                text: `Invalid category: ${category}. Valid categories: ${VALID_CATEGORIES.join(", ")}`,
+                            }],
+                        isError: true,
+                    };
+                }
                 if (!store.exists()) {
                     return {
-                        content: [
-                            {
+                        content: [{
                                 type: "text",
                                 text: "No .context/ directory found. Run `repomemory init` first.",
-                            },
-                        ],
+                            }],
                     };
                 }
                 const entries = store.listEntries(category);
                 if (entries.length === 0) {
                     return {
-                        content: [
-                            {
+                        content: [{
                                 type: "text",
                                 text: `No entries found${category ? ` in ${category}` : ""}. Run \`repomemory analyze\` to populate, or use context_write to add entries.`,
-                            },
-                        ],
+                            }],
                     };
                 }
                 const grouped = {};
@@ -228,7 +301,7 @@ export async function startMcpServer(repoRoot, config) {
                     for (const entry of catEntries) {
                         const sizeKb = (entry.sizeBytes / 1024).toFixed(1);
                         const age = getRelativeTime(entry.lastModified);
-                        text += `- **${entry.filename}** — ${entry.title} (${sizeKb}KB, ${age})\n`;
+                        text += `- **${entry.filename}** \u2014 ${entry.title} (${sizeKb}KB, ${age})\n`;
                     }
                     text += "\n";
                 }
@@ -240,36 +313,30 @@ export async function startMcpServer(repoRoot, config) {
                 const content = store.readEntry(category, fname);
                 if (!content) {
                     return {
-                        content: [
-                            {
+                        content: [{
                                 type: "text",
                                 text: `File not found: ${category}/${fname}. Use context_list to see available files.`,
-                            },
-                        ],
+                            }],
                     };
                 }
                 return {
-                    content: [
-                        {
+                    content: [{
                             type: "text",
                             text: `# ${category}/${fname}\n\n${content}`,
-                        },
-                    ],
+                        }],
                 };
             }
             default:
                 return {
-                    content: [
-                        {
+                    content: [{
                             type: "text",
                             text: `Unknown tool: ${name}`,
-                        },
-                    ],
+                        }],
                     isError: true,
                 };
         }
     });
-    // --- Resources (expose .context/ files as MCP resources) ---
+    // --- Resources ---
     server.setRequestHandler(ListResourcesRequestSchema, async () => {
         if (!store.exists()) {
             return { resources: [] };
@@ -296,21 +363,28 @@ export async function startMcpServer(repoRoot, config) {
             throw new Error(`Resource not found: ${uri}`);
         }
         return {
-            contents: [
-                {
+            contents: [{
                     uri,
                     mimeType: "text/markdown",
                     text: content,
-                },
-            ],
+                }],
         };
     });
-    // Connect via stdio
+    // Graceful shutdown
+    const cleanup = () => {
+        if (searchIndex) {
+            searchIndex.close();
+            searchIndex = null;
+        }
+        process.exit(0);
+    };
+    process.on("SIGTERM", cleanup);
+    process.on("SIGINT", cleanup);
     const transport = new StdioServerTransport();
     await server.connect(transport);
 }
 function getRelativeTime(date) {
-    const seconds = Math.floor((Date.now() - date.getTime()) / 1000);
+    const seconds = Math.max(0, Math.floor((Date.now() - date.getTime()) / 1000));
     if (seconds < 60)
         return "just now";
     if (seconds < 3600)