renkin 1.0.6 → 1.0.8

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package/README.md CHANGED
@@ -17,6 +17,14 @@ RENKIN has two uses:
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  Auditing is local and reproducible. Reports include structural checks, stock
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  coverage, forward replay, provenance, and a verifiable audit manifest.
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+ Current release: **v1.0.8**. Public inputs are validated before execution;
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+ WASM applies bounded search limits, and MCP numeric and element-filter
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+ arguments fail closed when invalid. Standard MCP search also accepts an
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+ optional cooperative `timeout_secs` budget.
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+
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+ The audit and private-stock policy layers are split into deterministic,
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+ testable steps so their report schema and policy behavior remain stable.
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+
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  ## Install
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  ```bash
@@ -121,14 +129,16 @@ explanation, constraints, diagnostics, and audit receipts. See the [MCP guide](h
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  ## Benchmark status
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- The latest checked-in formal comparison uses a declared shared-stock endpoint.
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- RENKIN and AiZynthFinder reached the same route count in the published
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- equal-condition comparison; universal CASP superiority is not proven.
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- Success rate, speed, stock definition, validation, and route quality must be
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- reported separately.
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+ The registered Phase 55 shared-stock, shared-budget TEST comparison completed
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+ 690 targets: RENKIN found 481 strict routes (69.71%) and AiZynthFinder 4.4.1
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+ found 32 (4.64%). The paired coverage difference was +65.07 percentage points
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+ (95% CI +61.45 to +68.55). This is evidence only for the pinned cohort,
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+ assets, stock, and budget; it is neither a universal CASP claim nor evidence
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+ of laboratory success. Peak-RSS and time-to-first-route receipts remain open,
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+ so it is not a whole-cohort performance claim.
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  See the [benchmark documentation](https://kent-tokyo.github.io/renkin/benchmark/)
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- for the full measurements, methodology, confidence intervals, and limitations.
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+ for protocol, artifacts, and claim boundaries.
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  ## Development
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@@ -146,6 +156,8 @@ Important boundaries:
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  - stock identity is exact standardized canonical-SMILES membership;
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  - route success is not experimental success;
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  - external model output is evidence or candidates, not automatic validity;
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+ - comparison manifests bind the tool, configuration, input files, and checked
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+ worktree state so resumed runs cannot silently mix configurations;
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  - benchmark claims must name the dataset, stock, versions, and endpoint.
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  ## License
package/package.json CHANGED
@@ -5,7 +5,7 @@
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  "kent-tokyo <kent-tokyo@users.noreply.github.com>"
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  ],
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  "description": "Ultra-fast retrosynthesis engine for computer-aided synthesis planning (CASP) — pure Rust, WASM-ready, Python bindings via PyO3",
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- "version": "1.0.6",
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+ "version": "1.0.8",
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  "license": "MIT",
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  "repository": {
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  "type": "git",
package/renkin_bg.wasm CHANGED
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