renkin 1.0.4 → 1.0.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +2 -1
- package/package.json +1 -1
- package/renkin_bg.wasm +0 -0
package/README.md
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@@ -171,7 +171,7 @@ Use `--format mermaid` for GitHub/Notion-compatible flowcharts.
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## Current Limitations
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Current release: **v1.0.
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Current release: **v1.0.5**.
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⚠️ The corrected 4,903-target v1.0.1 shared-stock comparison is complete. RENKIN
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recorded 591/4,903 primary successes (12.05%) versus AiZynthFinder 4.4.1's
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| **LightGBM candidate reranker** | `--reranker-model`/`--reranker-freq-table` (CLI) or `reranker_model_path`/`reranker_freq_table_path` (Python) — opt-in, ordering-only re-ranking via a frozen LightGBM model; never changes which candidates are generated, only their order, and reproduces legacy ordering byte-for-byte when off. Paired 100-target route-search gate: `route_to_configured_stock` 16→20 (+4/-0). `python3 scripts/fetch_reranker_model.py` fetches the frozen model (SHA-256-verified, not bundled in any package — see [Roadmap](#roadmap)) |
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| **Coverage mode** (opt-in) | `--search-mode coverage --coverage-templates <path>` (CLI) or `search_mode="coverage"`, `coverage_templates_path=...` (Python) — if the default template set finds no route, automatically escalates to a larger, separately loaded template set, cooperatively cancellable via `--coverage-timeout-secs`. Standard-mode output is byte-for-byte unchanged when not used. `python3 scripts/fetch_coverage_templates.py` fetches the frozen 2,000-template Stage-2 set (SHA-256-verified, not bundled in any package, same reasoning as the reranker model — see [Roadmap](#roadmap)) |
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| **Staged recovery** (opt-in, native) | `--search-mode recovery --beam-diversity-slots N` preserves a successful baseline and conditionally escalates element gating, diversity, depth, and caller-supplied narrow-to-broad coverage tiers. Every attempt is audit-visible; standard mode and its defaults are unchanged. See [staged recovery mode](docs/guides/staged-recovery.md) |
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| **Search budget profiles** (opt-in) | `--search-profile fast\|balanced\|deep` selects an explicit speed/coverage budget. Named-profile JSON records schema-versioned effective baseline/recovery settings; legacy output is unchanged when omitted. |
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| **RENKIN Bridge / `audit-route`** | `renkin audit-route route.json [--format auto\|renkin\|aizynthfinder\|syntheseus\|synplanner] [--stock stock.smi] [--output human\|json]` — tool-neutral route audit: structural integrity, stock, and declared-reaction forward-replay validation, each reported independently as `pass`/`fail`/`not_evaluable`, rolled up into a route-level `pass`/`fail`/`partial` verdict. Reads RENKIN-native route JSON (v0.25.0), real AiZynthFinder route JSON — single-target and gzip-compressed batch output, verified against AiZynthFinder 4.3.2, 4.4.0, and 4.4.1 specifically, not claimed for every version (v0.26.0, version matrix widened v0.32.0) — Syntheseus routes via the optional `renkin.syntheseus_exporter`'s `syntheseus-route-v1` interchange schema, since Syntheseus itself has no native route export (v0.30.0) — and real SynPlanner 1.6.0 `write_routes_json` exports directly, no exporter package needed (v0.34.0); `--format auto` detects the input shape and hard-errors rather than guessing on anything ambiguous. [AiZynthFinder walkthrough →](https://kent-tokyo.github.io/renkin/guides/aizynthfinder-audit-demo/) · [Syntheseus walkthrough →](https://kent-tokyo.github.io/renkin/guides/syntheseus-audit-demo/) · [SynPlanner walkthrough →](https://kent-tokyo.github.io/renkin/guides/synplanner-audit-demo/) |
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| **Route scoring & diagnostics** | Separate `confidence`, `success_probability`, cost, feasibility findings, building-block diversity, and template-proxy chemical-idea diversity; no aggregate laboratory-feasibility score is fabricated — see the caveat below and the [diagnostics](docs/guides/route-feasibility-diagnostics.md) / [diversity](docs/guides/route-set-diversity.md) guides |
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| **Step metadata provenance** | Each step reports `metadata_source`/`metadata_scope` so it's machine-readable whether `conditions`/`reaction_family` came from a rule-author default vs. something more grounded; absent (not fabricated) for extracted templates |
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package/package.json
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"kent-tokyo <kent-tokyo@users.noreply.github.com>"
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],
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"description": "Ultra-fast retrosynthesis engine for computer-aided synthesis planning (CASP) — pure Rust, WASM-ready, Python bindings via PyO3",
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"version": "1.0.
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"version": "1.0.5",
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"license": "MIT",
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"repository": {
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"type": "git",
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package/renkin_bg.wasm
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Binary file
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