renkin 0.19.0 → 0.20.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +16 -0
- package/package.json +1 -1
- package/renkin_bg.wasm +0 -0
package/README.md
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@@ -314,6 +314,20 @@ underneath (deduplicated when the same reference backs more than one part of
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an example). See [Reaction Evidence guide](docs/guides/reaction-evidence.md#substrate-specific-examples-schema_version-2)
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for full matching/validation semantics.
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**Importing evidence from ORD.** `renkin evidence match` (exact-set batch
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template matching, no fuzzy/similarity matching) and
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[`scripts/ord_evidence_audit.py`](scripts/README_ord_evidence.md) (offline,
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network-free) turn a locally-downloaded
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[Open Reaction Database](https://github.com/open-reaction-database/ord-data)
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corpus into a `schema_version: 2` sidecar — every accepted record is
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independently re-validated by RENKIN's own loader, and anything not uniquely
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matched, unambiguous, and provenanced is excluded and counted in an audit
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report rather than guessed at. RENKIN itself never fetches or searches the
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literature; reported yields are citations, not predictions. ORD's reaction
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data is CC-BY-SA-4.0, a different license from RENKIN's own MIT code — see
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[Reaction Evidence guide](docs/guides/reaction-evidence.md#importing-from-ord-open-reaction-database)
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for the full acceptance criteria and licensing split.
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---
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## Key Features
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### Recently shipped
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- [x] `apply_retro`/`run_reactants` performance regression resolved — `chematic` moved from a narrow git-pinned fix to the published `0.8.0` release (upstream automorphism-orbit-pruned canonicalization, [chematic#193](https://github.com/kent-tokyo/chematic/pull/193)); on a fixed 30-target gate, measured in one session against current master: total elapsed **34.7%** faster, p95 **33.8%** faster, and the single worst-case target **42.2%** faster (confirmed via repeated isolated measurement, not a one-off run). Zero correctness change (`apply_retro` call counts identical across versions)
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- [x] `renkin-forward` CLI hardening — versioned `ForwardPredictionReport`, deterministic candidate IDs/merge/provenance, reactant-order-independent matching (up to 3 reactants), strict CLI/route-JSON validation
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- [x] RETROSPECT-inspired offline candidate-reranking foundation — candidate proposal/selection separation, feature schema v1, manifest v2, leakage-safe train/val/test splitting, 7 deterministic baseline arms + trained-ranker arm, paired bootstrap + offline gate tooling ([#59](https://github.com/kent-tokyo/renkin/pull/59); **foundation only — no trained model or accuracy result yet, not wired into route search**)
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- [x] Stable `template_id` (`rule:<name>` / `smirks-sha256:<hex>`) + `--template-metadata` evidence sidecar + `renkin template ids` ([#41](https://github.com/kent-tokyo/renkin/issues/41) phase 1)
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- [x] Substrate-specific `examples` (`schema_version: 2`) — per-step exact-substrate vs. same-template-different-substrate resolution, surfaced in `--format explain` and as `match_kind` in JSON ([#41](https://github.com/kent-tokyo/renkin/issues/41) phase 2)
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- [x] Deterministic ORD (Open Reaction Database) evidence import — offline `renkin evidence match` exact-set batch template matcher + `scripts/ord_evidence_audit.py` audit/converter into `schema_version: 2` sidecars; no network access, no fuzzy matching, ambiguous/unprovenanced records excluded and counted in an audit report rather than guessed at ([#41](https://github.com/kent-tokyo/renkin/issues/41) phase 3A)
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- [x] `renkin-bench cascade` — multi-stage search (fast defaults → hard cases re-run deeper); only unsolved targets propagate to later stages. **78.0% → 95.9%** on USPTO-50k
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- [x] `renkin-bench --failure-taxonomy` — classify unsolved targets by cause (beam limit / depth limit / template gap / stock near-miss)
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- [x] Graph-based ester cleavage — BFS-leakage-free `R-C(=O)-O-R' → RCOOH + R'OH`
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package/package.json
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"kent-tokyo <kent-tokyo@users.noreply.github.com>"
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],
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"description": "Ultra-fast retrosynthesis engine for computer-aided synthesis planning (CASP) — pure Rust, WASM-ready, Python bindings via PyO3",
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"version": "0.
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"version": "0.20.0",
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"license": "MIT",
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"repository": {
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"type": "git",
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package/renkin_bg.wasm
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Binary file
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