remnote-mcp-server 0.2.1 → 0.3.0

package/CHANGELOG.md

@@ -7,6 +7,36 @@ Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased]
 
+## [0.3.0] - 2026-02-12
+
+### Added
+
+- Comprehensive logging infrastructure with Pino logger
+- CLI argument parsing with Commander for server configuration
+- Configurable log levels (debug, info, warn, error) for console and file output
+- Optional file logging with separate log level control
+- Optional request/response logging to JSON Lines files for debugging
+- Verbose mode (`--verbose`) for quick debug logging enablement
+- CLI flags for port configuration (`--ws-port`, `--http-port`)
+- Structured logging throughout the application with contextual information
+- Debug-level logging for detailed troubleshooting
+- Request timing and duration tracking in logs
+- Graceful error handling with comprehensive error logging
+
+### Changed
+
+- Startup message now includes version number and port information
+- All console.error calls replaced with structured Pino logging
+- Server startup sequence now validates configuration before starting services
+- Environment variable configuration now validated with better error messages
+- Port validation moved earlier in startup process for faster failure feedback
+
+### Dependencies
+
+- Added `pino@^9.6.0` for structured logging
+- Added `commander@^13.0.0` for CLI argument parsing
+- Added `pino-pretty@^11.0.0` (dev) for human-readable development logs
+
 ## [0.2.1] - 2026-02-11
 
 ### Added

package/README.md

@@ -41,6 +41,25 @@ The server acts as a bridge:
 - WebSocket server (port 3002) connects to the RemNote browser plugin
 - Translates MCP tool calls into RemNote API actions
 
+**About Streamable HTTP Transport**
+
+This MCP server uses [Streamable HTTP
+transport](https://modelcontextprotocol.io/specification/2025-06-18/basic/transports#http-with-sse), a communication
+mechanism for MCP that supports multiple concurrent clients.
+
+**Key characteristics:**
+
+- **Lifecycle management**: You must start the server independently (`npm start` or `npm run dev`). Claude Code connects
+  to the running server via HTTP.
+- **Message protocol**: Communication uses JSON-RPC over HTTP POST for requests and Server-Sent Events (SSE) for
+  notifications.
+- **Multi-client support**: Multiple AI agents can connect simultaneously, each with their own MCP session.
+- **Session management**: Server tracks sessions via `mcp-session-id` headers and UUID-based request correlation.
+
+This architecture enables multiple Claude Code windows to access RemNote concurrently while maintaining process
+isolation and security boundaries. For technical details, see the [MCP
+specification](https://modelcontextprotocol.io/specification/2025-06-18/basic/transports).
+
 ## Features
 
 - **Create Notes** - Create new notes with optional parent hierarchy and tags
@@ -82,6 +101,8 @@ The WebSocket bridge still enforces a **single RemNote plugin connection**. This
 
 **From npm (recommended for most users):**
 
+See [MCP Server npm Package](https://www.npmjs.com/package/remnote-mcp-server).
+
 ```bash
 # Install globally
 npm install -g remnote-mcp-server
@@ -104,82 +125,59 @@ npm uninstall -g remnote-mcp-server
 git clone https://github.com/robert7/remnote-mcp-server.git
 cd remnote-mcp-server
 npm install
-npm run build
-
-# Creates global symlink: makes remnote-mcp-server command available system-wide
-npm link
-
-# Verify it worked
-which remnote-mcp-server
-# Should output e.g.: /Users/<username>/.nvm/versions/node/<version>/bin/remnote-mcp-server
-```
-
-**What npm link does:** Creates a symbolic link from your global `node_modules` bin directory to this project's
-executable, allowing Claude Code to launch `remnote-mcp-server` from anywhere without publishing to npm.
-
-**Important:** Claude Code CLI must have access to the same Node.js environment where you ran `npm link`. If Claude Code
-uses a different Node.js version or environment (e.g., different shell PATH), it won't find the command. Ensure your
-shell configuration (`.bashrc`, `.zshrc`) properly exposes your Node.js environment.
-
-**Unlinking the source installation:**
-
-When you no longer want the global `remnote-mcp-server` command to point to your local repository:
-
-```bash
-# Remove the global symlink
-npm unlink -g remnote-mcp-server
-
-# Verify it's removed
-which remnote-mcp-server
-# Should output nothing if successfully unlinked
 ```
 
-After unlinking, you can install the published npm package globally with `npm install -g remnote-mcp-server` if needed.
-
-**About Streamable HTTP Transport**
-
-This MCP server uses [Streamable HTTP
-transport](https://modelcontextprotocol.io/specification/2025-06-18/basic/transports#http-with-sse), a communication
-mechanism for MCP that supports multiple concurrent clients.
-
-**Key characteristics:**
-
-- **Lifecycle management**: You must start the server independently (`npm start` or `npm run dev`). Claude Code connects
-  to the running server via HTTP.
-- **Message protocol**: Communication uses JSON-RPC over HTTP POST for requests and Server-Sent Events (SSE) for
-  notifications.
-- **Multi-client support**: Multiple AI agents can connect simultaneously, each with their own MCP session.
-- **Session management**: Server tracks sessions via `mcp-session-id` headers and UUID-based request correlation.
-
-This architecture enables multiple Claude Code windows to access RemNote concurrently while maintaining process
-isolation and security boundaries. For technical details, see the [MCP
-specification](https://modelcontextprotocol.io/specification/2025-06-18/basic/transports).
-
 ### 2. Install RemNote MCP Bridge Plugin
 
 Install the [RemNote MCP Bridge plugin](https://github.com/robert7/remnote-mcp-bridge) in your RemNote app:
 
 1. Open RemNote
 2. Navigate to plugin installation (see plugin repository for instructions)
-3. Configure WebSocket URL: `ws://127.0.0.1:3002`
-4. Enable auto-reconnect
 
 ### 3. Start the Server
 
 **IMPORTANT:** You must start the server before using it with Claude Code.
 
 ```bash
-# Production mode
-npm start
+# Start with default settings
+remnote-mcp-server
+
+# With custom ports
+remnote-mcp-server --ws-port 4002 --http-port 4001
+
+# With verbose logging
+remnote-mcp-server --verbose
+
+# With file logging
+remnote-mcp-server --log-file /tmp/remnote-mcp.log --log-level-file debug
 
 # OR development mode (with hot reload)
 npm run dev
+# you can also pass CLI options after `--`, e.g.
+npm run dev -- -h
 ```
 
+**CLI Options:**
+
+Server Configuration:
+- `--ws-port <number>` - WebSocket port (default: 3002, env: REMNOTE_WS_PORT)
+- `--http-port <number>` - HTTP MCP port (default: 3001, env: REMNOTE_HTTP_PORT)
+
+Logging Configuration:
+- `--log-level <level>` - Console log level: debug, info, warn, error (default: info)
+- `--log-level-file <level>` - File log level (default: same as --log-level)
+- `--verbose` - Shorthand for --log-level debug
+- `--log-file <path>` - Log to file (default: console only)
+- `--request-log <path>` - Log all WebSocket requests to file (JSON Lines)
+- `--response-log <path>` - Log all WebSocket responses to file (JSON Lines)
+
+Information:
+- `-h, --help` - Display help message
+- `-v, --version` - Display version number
+
 Expected output:
 ```
-[WebSocket Server] Listening on port 3002
-[HTTP Server] Listening on port 3001
+RemNote MCP Server v0.2.1 listening { wsPort: 3002, httpPort: 3001 }
 ```
 
 Keep this terminal running. The server must be running for Claude Code to connect.
@@ -317,12 +315,11 @@ Use remnote_status to check the connection
 Expected response:
 
 ```json
-{
-  "connected": true,
-  "actionsProcessed": 0,
-  "pluginVersion": "1.1.0",
-  "timestamp": "2026-02-07T..."
-}
+⏺ remnote - remnote_status (MCP)
+  ⎿ {
+       "connected": true,
+       "pluginVersion": "0.3.2"
+     }
 ```
 
 ### Test RemNote Integration
@@ -398,6 +395,8 @@ Check if RemNote is connected
 export REMNOTE_HTTP_PORT=3003
 export REMNOTE_WS_PORT=3004
 npm start
+# you can pass CLI options after `--`, e.g.
+npm start -- -h
 ```
 
 Then update your `~/.claude.json` and RemNote plugin settings to use the new ports.
@@ -538,35 +537,6 @@ npm run lint         # ESLint only
 npm run format       # Format code
 ```
 
-### Before Committing
-
-Run `./code-quality.sh` to ensure all checks pass.
-
-### Manual Testing
-
-To test the server:
-
-```bash
-cd ~/Projects/_private/remnote-mcp-server
-npm run dev
-```
-
-Expected output:
-```
-[WebSocket Server] Listening on port 3002
-[HTTP Server] Listening on port 3001
-```
-
-When the RemNote plugin connects:
-```
-[WebSocket Server] Client connected
-[RemNote Bridge] RemNote plugin connected
-```
-
-When Claude Code connects, you'll see HTTP requests in the logs.
-
-Press Ctrl+C to stop.
-
 ### Development Documentation
 
 - **[docs/architecture.md](./docs/architecture.md)** - Architecture and design rationale

package/dist/cli.d.ts

@@ -0,0 +1,14 @@
+export interface CliOptions {
+    wsPort?: number;
+    httpPort?: number;
+    logLevel?: string;
+    logLevelFile?: string;
+    verbose?: boolean;
+    logFile?: string;
+    requestLog?: string;
+    responseLog?: string;
+}
+/**
+ * Parse CLI arguments and return typed options
+ */
+export declare function parseCliArgs(): CliOptions;

package/dist/cli.js

@@ -0,0 +1,51 @@
+import { Command } from 'commander';
+import { createRequire } from 'module';
+const require = createRequire(import.meta.url);
+const packageJson = require('../package.json');
+const validLogLevels = ['debug', 'info', 'warn', 'error'];
+/**
+ * Parse CLI arguments and return typed options
+ */
+export function parseCliArgs() {
+    const program = new Command();
+    program
+        .name('remnote-mcp-server')
+        .description('MCP server bridge for RemNote knowledge base')
+        .version(packageJson.version)
+        .option('--ws-port <number>', 'WebSocket port (default: 3002, env: REMNOTE_WS_PORT)', parsePort)
+        .option('--http-port <number>', 'HTTP MCP port (default: 3001, env: REMNOTE_HTTP_PORT)', parsePort)
+        .option('--log-level <level>', `Console log level: ${validLogLevels.join(', ')} (default: info)`, validateLogLevel)
+        .option('--log-level-file <level>', `File log level (default: same as --log-level)`, validateLogLevel)
+        .option('--verbose', 'Shorthand for --log-level debug')
+        .option('--log-file <path>', 'Log to file (default: console only)')
+        .option('--request-log <path>', 'Log all WebSocket requests to file (JSON Lines)')
+        .option('--response-log <path>', 'Log all WebSocket responses to file (JSON Lines)');
+    program.parse();
+    const options = program.opts();
+    // Validate port conflicts
+    if (options.wsPort && options.httpPort && options.wsPort === options.httpPort) {
+        console.error('Error: WebSocket port and HTTP port cannot be the same');
+        process.exit(1);
+    }
+    return options;
+}
+/**
+ * Parse and validate port number
+ */
+function parsePort(value) {
+    const port = parseInt(value, 10);
+    if (isNaN(port) || port < 1 || port > 65535) {
+        throw new Error(`Invalid port number: ${value}. Must be between 1 and 65535.`);
+    }
+    return port;
+}
+/**
+ * Validate log level string
+ */
+function validateLogLevel(value) {
+    if (!validLogLevels.includes(value.toLowerCase())) {
+        throw new Error(`Invalid log level: ${value}. Valid levels: ${validLogLevels.join(', ')}`);
+    }
+    return value.toLowerCase();
+}
+//# sourceMappingURL=cli.js.map

package/dist/cli.js.map

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package/dist/config.d.ts

@@ -0,0 +1,16 @@
+import type { CliOptions } from './cli.js';
+export interface ServerConfig {
+    wsPort: number;
+    httpPort: number;
+    logLevel: string;
+    logLevelFile?: string;
+    logFile?: string;
+    requestLog?: string;
+    responseLog?: string;
+    prettyLogs: boolean;
+}
+/**
+ * Merge CLI options with environment variables and apply defaults
+ * Precedence: CLI > Environment Variables > Defaults
+ */
+export declare function getConfig(cliOptions: CliOptions): ServerConfig;

package/dist/config.js

@@ -0,0 +1,41 @@
+/**
+ * Merge CLI options with environment variables and apply defaults
+ * Precedence: CLI > Environment Variables > Defaults
+ */
+export function getConfig(cliOptions) {
+    // Apply verbose flag override
+    let logLevel = cliOptions.logLevel || 'info';
+    if (cliOptions.verbose) {
+        logLevel = 'debug';
+    }
+    // Validate CLI port ranges before merging
+    if (cliOptions.wsPort !== undefined && (cliOptions.wsPort < 1 || cliOptions.wsPort > 65535)) {
+        throw new Error(`Invalid WebSocket port: ${cliOptions.wsPort}. Must be between 1 and 65535.`);
+    }
+    if (cliOptions.httpPort !== undefined &&
+        (cliOptions.httpPort < 1 || cliOptions.httpPort > 65535)) {
+        throw new Error(`Invalid HTTP port: ${cliOptions.httpPort}. Must be between 1 and 65535.`);
+    }
+    // Get ports with CLI > env > default precedence
+    const wsPort = cliOptions.wsPort || parseInt(process.env.REMNOTE_WS_PORT || '3002', 10);
+    const httpPort = cliOptions.httpPort || parseInt(process.env.REMNOTE_HTTP_PORT || '3001', 10);
+    // Validate port conflicts
+    if (wsPort === httpPort) {
+        throw new Error(`WebSocket port and HTTP port cannot be the same (both set to ${wsPort})`);
+    }
+    // File log level defaults to console log level if not specified
+    const logLevelFile = cliOptions.logLevelFile || (cliOptions.logFile ? logLevel : undefined);
+    // Pretty logs in development (when using pino-pretty)
+    const prettyLogs = process.stdout.isTTY === true;
+    return {
+        wsPort,
+        httpPort,
+        logLevel,
+        logLevelFile,
+        logFile: cliOptions.logFile,
+        requestLog: cliOptions.requestLog,
+        responseLog: cliOptions.responseLog,
+        prettyLogs,
+    };
+}
+//# sourceMappingURL=config.js.map

package/dist/config.js.map

@@ -0,0 +1 @@
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package/dist/http-server.d.ts

@@ -1,4 +1,5 @@
 import { WebSocketServer } from './websocket-server.js';
+import type { Logger } from './logger.js';
 interface ServerInfo {
     name: string;
     version: string;
@@ -9,8 +10,9 @@ export declare class HttpMcpServer {
     private port;
     private wsServer;
     private serverInfo;
+    private logger;
     private transports;
-    constructor(port: number, wsServer: WebSocketServer, serverInfo: ServerInfo);
+    constructor(port: number, wsServer: WebSocketServer, serverInfo: ServerInfo, logger: Logger);
     private setupRoutes;
     private initializeNewSession;
     private handleSessionRequest;

package/dist/http-server.js

@@ -9,11 +9,13 @@ export class HttpMcpServer {
     port;
     wsServer;
     serverInfo;
+    logger;
     transports = new Map();
-    constructor(port, wsServer, serverInfo) {
+    constructor(port, wsServer, serverInfo, logger) {
         this.port = port;
         this.wsServer = wsServer;
         this.serverInfo = serverInfo;
+        this.logger = logger.child({ context: 'http-server' });
         // Create Express app with JSON parsing
         this.app = express();
         this.app.use(express.json());
@@ -28,6 +30,10 @@ export class HttpMcpServer {
                 const body = req.body;
                 // Check if this is an initialize request
                 const isInitializeRequest = body && body.method === 'initialize' && body.jsonrpc === '2.0';
+                this.logger.debug({
+                    sessionId: sessionId || 'none',
+                    method: body?.method || 'unknown',
+                }, 'POST request received');
                 if (!sessionId && isInitializeRequest) {
                     // New session initialization
                     await this.initializeNewSession(req, res, body);
@@ -49,7 +55,10 @@ export class HttpMcpServer {
                 }
             }
             catch (error) {
-                console.error('[HTTP Server] Error handling POST request:', error);
+                this.logger.error({
+                    error,
+                    sessionId: req.headers['mcp-session-id'],
+                }, 'Error handling POST request');
                 res.status(500).json({
                     jsonrpc: '2.0',
                     error: {
@@ -63,6 +72,7 @@ export class HttpMcpServer {
         // GET: SSE stream for session notifications
         this.app.get('/mcp', async (req, res) => {
             const sessionId = req.headers['mcp-session-id'];
+            this.logger.debug({ sessionId: sessionId || 'none' }, 'SSE stream opened');
             if (!sessionId) {
                 res.status(400).json({ error: 'Missing mcp-session-id header' });
                 return;
@@ -78,6 +88,7 @@ export class HttpMcpServer {
         // DELETE: Terminate session
         this.app.delete('/mcp', async (req, res) => {
             const sessionId = req.headers['mcp-session-id'];
+            this.logger.debug({ sessionId: sessionId || 'none' }, 'Session termination requested');
             if (!sessionId) {
                 res.status(400).json({ error: 'Missing mcp-session-id header' });
                 return;
@@ -97,14 +108,14 @@ export class HttpMcpServer {
             sessionIdGenerator: () => randomUUID(),
             onsessioninitialized: (sessionId) => {
                 this.transports.set(sessionId, transport);
-                console.error(`[HTTP Server] New session initialized: ${sessionId}`);
+                this.logger.info({ sessionId }, 'New MCP session initialized');
             },
         });
         // Set up onclose handler to clean up transport when closed
         transport.onclose = () => {
             const sessionId = transport.sessionId;
             if (sessionId && this.transports.has(sessionId)) {
-                console.error(`[HTTP Server] Session closed: ${sessionId}`);
+                this.logger.info({ sessionId }, 'MCP session closed');
                 this.transports.delete(sessionId);
             }
         };
@@ -115,7 +126,7 @@ export class HttpMcpServer {
             },
         });
         // Register all tools with the shared WebSocket server
-        registerAllTools(server, this.wsServer);
+        registerAllTools(server, this.wsServer, this.logger);
         // Connect server to transport
         await server.connect(transport);
         // Handle the initialize request
@@ -140,11 +151,11 @@ export class HttpMcpServer {
         return new Promise((resolve, reject) => {
             try {
                 this.server = this.app.listen(this.port, () => {
-                    console.error(`[HTTP Server] Listening on port ${this.port}`);
+                    this.logger.info({ port: this.port }, 'HTTP server started');
                     resolve();
                 });
                 this.server.on('error', (error) => {
-                    console.error('[HTTP Server] Server error:', error);
+                    this.logger.error({ error }, 'HTTP server error');
                     reject(error);
                 });
             }
@@ -157,19 +168,19 @@ export class HttpMcpServer {
         // Close all active transports
         for (const [sessionId, transport] of this.transports.entries()) {
             try {
-                console.error(`[HTTP Server] Closing session: ${sessionId}`);
+                this.logger.debug({ sessionId }, 'Closing MCP session');
                 await transport.close();
                 this.transports.delete(sessionId);
             }
             catch (error) {
-                console.error(`[HTTP Server] Error closing session ${sessionId}:`, error);
+                this.logger.error({ sessionId, error }, 'Error closing session');
             }
         }
         // Close HTTP server
         return new Promise((resolve) => {
             if (this.server) {
                 this.server.close(() => {
-                    console.error('[HTTP Server] Server stopped');
+                    this.logger.info('HTTP server stopped');
                     this.server = null;
                     resolve();
                 });

package/dist/http-server.js.map

@@ -1 +1 @@
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package/dist/index.js

@@ -2,32 +2,64 @@
 import { createRequire } from 'module';
 import { WebSocketServer } from './websocket-server.js';
 import { HttpMcpServer } from './http-server.js';
+import { parseCliArgs } from './cli.js';
+import { getConfig } from './config.js';
+import { createLogger, ensureLogDirectory, createRequestResponseLogger } from './logger.js';
 const require = createRequire(import.meta.url);
 const packageJson = require('../package.json');
-const WS_PORT = parseInt(process.env.REMNOTE_WS_PORT || '3002', 10);
-const HTTP_PORT = parseInt(process.env.REMNOTE_HTTP_PORT || '3001', 10);
 async function main() {
+    // Parse CLI arguments and merge with environment variables
+    const cliOptions = parseCliArgs();
+    const config = getConfig(cliOptions);
+    // Ensure log directories exist
+    if (config.logFile) {
+        await ensureLogDirectory(config.logFile);
+    }
+    if (config.requestLog) {
+        await ensureLogDirectory(config.requestLog);
+    }
+    if (config.responseLog) {
+        await ensureLogDirectory(config.responseLog);
+    }
+    // Create logger
+    const logger = createLogger({
+        consoleLevel: config.logLevel,
+        fileLevel: config.logLevelFile,
+        filePath: config.logFile,
+        pretty: config.prettyLogs,
+    });
+    // Create request/response loggers if configured
+    const requestLogger = config.requestLog
+        ? createRequestResponseLogger(config.requestLog)
+        : undefined;
+    const responseLogger = config.responseLog
+        ? createRequestResponseLogger(config.responseLog)
+        : undefined;
     // Initialize WebSocket server for RemNote plugin
-    const wsServer = new WebSocketServer(WS_PORT);
+    const wsServer = new WebSocketServer(config.wsPort, logger, requestLogger, responseLogger);
     // Log connection status
     wsServer.onClientConnect(() => {
-        console.error('[RemNote Bridge] RemNote plugin connected');
+        logger.info('RemNote plugin connected');
     });
     wsServer.onClientDisconnect(() => {
-        console.error('[RemNote Bridge] RemNote plugin disconnected');
+        logger.info('RemNote plugin disconnected');
     });
     // Start WebSocket server
     await wsServer.start();
-    console.error(`[WebSocket Server] Listening on port ${WS_PORT}`);
     // Initialize HTTP MCP server
-    const httpServer = new HttpMcpServer(HTTP_PORT, wsServer, {
+    const httpServer = new HttpMcpServer(config.httpPort, wsServer, {
         name: 'remnote-mcp-server',
         version: packageJson.version,
-    });
+    }, logger);
     await httpServer.start();
+    // Log startup message
+    logger.info({
+        wsPort: config.wsPort,
+        httpPort: config.httpPort,
+    }, `RemNote MCP Server v${packageJson.version} listening`);
     // Graceful shutdown
     const shutdown = async () => {
-        console.error('[MCP Server] Shutting down...');
+        logger.info('Shutting down');
         await httpServer.stop();
         await wsServer.stop();
         process.exit(0);
@@ -36,6 +68,7 @@ async function main() {
     process.on('SIGTERM', shutdown);
 }
 main().catch((error) => {
+    // Pre-logger error handling
     console.error('[MCP Server] Fatal error:', error);
     process.exit(1);
 });

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AACA,OAAO,EAAE,aAAa,EAAE,MAAM,QAAQ,CAAC;AACvC,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AACjD,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAC;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AACxC,OAAO,EAAE,YAAY,EAAE,kBAAkB,EAAE,2BAA2B,EAAE,MAAM,aAAa,CAAC;AAE5F,MAAM,OAAO,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAC/C,MAAM,WAAW,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAAC;AAE/C,KAAK,UAAU,IAAI;IACjB,2DAA2D;IAC3D,MAAM,UAAU,GAAG,YAAY,EAAE,CAAC;IAClC,MAAM,MAAM,GAAG,SAAS,CAAC,UAAU,CAAC,CAAC;IAErC,+BAA+B;IAC/B,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QACnB,MAAM,kBAAkB,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IAC3C,CAAC;IACD,IAAI,MAAM,CAAC,UAAU,EAAE,CAAC;QACtB,MAAM,kBAAkB,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;IAC9C,CAAC;IACD,IAAI,MAAM,CAAC,WAAW,EAAE,CAAC;QACvB,MAAM,kBAAkB,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;IAC/C,CAAC;IAED,gBAAgB;IAChB,MAAM,MAAM,GAAG,YAAY,CAAC;QAC1B,YAAY,EAAE,MAAM,CAAC,QAAQ;QAC7B,SAAS,EAAE,MAAM,CAAC,YAAY;QAC9B,QAAQ,EAAE,MAAM,CAAC,OAAO;QACxB,MAAM,EAAE,MAAM,CAAC,UAAU;KAC1B,CAAC,CAAC;IAEH,gDAAgD;IAChD,MAAM,aAAa,GAAG,MAAM,CAAC,UAAU;QACrC,CAAC,CAAC,2BAA2B,CAAC,MAAM,CAAC,UAAU,CAAC;QAChD,CAAC,CAAC,SAAS,CAAC;IACd,MAAM,cAAc,GAAG,MAAM,CAAC,WAAW;QACvC,CAAC,CAAC,2BAA2B,CAAC,MAAM,CAAC,WAAW,CAAC;QACjD,CAAC,CAAC,SAAS,CAAC;IAEd,iDAAiD;IACjD,MAAM,QAAQ,GAAG,IAAI,eAAe,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,aAAa,EAAE,cAAc,CAAC,CAAC;IAE3F,wBAAwB;IACxB,QAAQ,CAAC,eAAe,CAAC,GAAG,EAAE;QAC5B,MAAM,CAAC,IAAI,CAAC,0BAA0B,CAAC,CAAC;IAC1C,CAAC,CAAC,CAAC;IAEH,QAAQ,CAAC,kBAAkB,CAAC,GAAG,EAAE;QAC/B,MAAM,CAAC,IAAI,CAAC,6BAA6B,CAAC,CAAC;IAC7C,CAAC,CAAC,CAAC;IAEH,yBAAyB;IACzB,MAAM,QAAQ,CAAC,KAAK,EAAE,CAAC;IAEvB,6BAA6B;IAC7B,MAAM,UAAU,GAAG,IAAI,aAAa,CAClC,MAAM,CAAC,QAAQ,EACf,QAAQ,EACR;QACE,IAAI,EAAE,oBAAoB;QAC1B,OAAO,EAAE,WAAW,CAAC,OAAO;KAC7B,EACD,MAAM,CACP,CAAC;IAEF,MAAM,UAAU,CAAC,KAAK,EAAE,CAAC;IAEzB,sBAAsB;IACtB,MAAM,CAAC,IAAI,CACT;QACE,MAAM,EAAE,MAAM,CAAC,MAAM;QACrB,QAAQ,EAAE,MAAM,CAAC,QAAQ;KAC1B,EACD,uBAAuB,WAAW,CAAC,OAAO,YAAY,CACvD,CAAC;IAEF,oBAAoB;IACpB,MAAM,QAAQ,GAAG,KAAK,IAAI,EAAE;QAC1B,MAAM,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC;QAC7B,MAAM,UAAU,CAAC,IAAI,EAAE,CAAC;QACxB,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;QACtB,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC,CAAC;IAEF,OAAO,CAAC,EAAE,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;IAC/B,OAAO,CAAC,EAAE,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAC;AAClC,CAAC;AAED,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,EAAE;IACrB,4BAA4B;IAC5B,OAAO,CAAC,KAAK,CAAC,2BAA2B,EAAE,KAAK,CAAC,CAAC;IAClD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAClB,CAAC,CAAC,CAAC"}

package/dist/logger.d.ts

@@ -0,0 +1,20 @@
+import pino from 'pino';
+export type { Logger } from 'pino';
+export interface LoggerConfig {
+    consoleLevel: string;
+    fileLevel?: string;
+    filePath?: string;
+    pretty?: boolean;
+}
+/**
+ * Create a Pino logger with the specified configuration
+ */
+export declare function createLogger(config: LoggerConfig): pino.Logger;
+/**
+ * Create a logger for request/response logging (JSON Lines format)
+ */
+export declare function createRequestResponseLogger(filePath: string): pino.Logger;
+/**
+ * Ensure directory exists for log file
+ */
+export declare function ensureLogDirectory(filePath: string): Promise<void>;

package/dist/logger.js

@@ -0,0 +1,85 @@
+import pino from 'pino';
+import { mkdir } from 'fs/promises';
+import { dirname } from 'path';
+/**
+ * Create a Pino logger with the specified configuration
+ */
+export function createLogger(config) {
+    const targets = [];
+    // Console transport
+    if (config.pretty) {
+        targets.push({
+            level: config.consoleLevel,
+            target: 'pino-pretty',
+            options: {
+                colorize: true,
+                translateTime: 'HH:MM:ss.l',
+                ignore: 'pid,hostname',
+            },
+        });
+    }
+    else {
+        targets.push({
+            level: config.consoleLevel,
+            target: 'pino/file',
+            options: { destination: 2 }, // stderr
+        });
+    }
+    // File transport (if configured)
+    if (config.filePath && config.fileLevel) {
+        targets.push({
+            level: config.fileLevel,
+            target: 'pino/file',
+            options: { destination: config.filePath },
+        });
+    }
+    return pino({
+        level: getMinLevel(config.consoleLevel, config.fileLevel),
+        transport: {
+            targets,
+        },
+    });
+}
+/**
+ * Create a logger for request/response logging (JSON Lines format)
+ */
+export function createRequestResponseLogger(filePath) {
+    return pino({
+        level: 'info',
+        timestamp: pino.stdTimeFunctions.isoTime,
+    }, pino.destination(filePath));
+}
+/**
+ * Ensure directory exists for log file
+ */
+export async function ensureLogDirectory(filePath) {
+    try {
+        const dir = dirname(filePath);
+        await mkdir(dir, { recursive: true });
+    }
+    catch (error) {
+        throw new Error(`Failed to create log directory for ${filePath}: ${error instanceof Error ? error.message : String(error)}`);
+    }
+}
+/**
+ * Get minimum log level between console and file
+ */
+function getMinLevel(consoleLevel, fileLevel) {
+    const levels = {
+        debug: 20,
+        info: 30,
+        warn: 40,
+        error: 50,
+    };
+    const consoleLevelNum = levels[consoleLevel] || 30;
+    const fileLevelNum = fileLevel ? levels[fileLevel] || 30 : Infinity;
+    const minLevelNum = Math.min(consoleLevelNum, fileLevelNum);
+    // Return level name for minimum level number
+    for (const [name, num] of Object.entries(levels)) {
+        if (num === minLevelNum) {
+            return name;
+        }
+    }
+    return 'info';
+}
+//# sourceMappingURL=logger.js.map

package/dist/logger.js.map

@@ -0,0 +1 @@
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package/dist/tools/index.d.ts

@@ -1,5 +1,6 @@
 import { Server } from '@modelcontextprotocol/sdk/server/index.js';
 import { WebSocketServer } from '../websocket-server.js';
+import type { Logger } from '../logger.js';
 export declare const CREATE_NOTE_TOOL: {
     name: string;
     description: string;
@@ -131,4 +132,4 @@ export declare const STATUS_TOOL: {
         properties: {};
     };
 };
-export declare function registerAllTools(server: Server, wsServer: WebSocketServer): void;
+export declare function registerAllTools(server: Server, wsServer: WebSocketServer, logger: Logger): void;

package/dist/tools/index.js

@@ -78,73 +78,68 @@ export const STATUS_TOOL = {
         properties: {},
     },
 };
-export function registerAllTools(server, wsServer) {
+export function registerAllTools(server, wsServer, logger) {
+    const toolLogger = logger.child({ context: 'tools' });
     // Single CallTool handler for all tools
     server.setRequestHandler(CallToolRequestSchema, async (request) => {
+        const toolName = request.params.name;
+        const startTime = Date.now();
+        toolLogger.debug({ tool: toolName, args: request.params.arguments }, 'Executing tool');
         try {
-            switch (request.params.name) {
+            let result;
+            switch (toolName) {
                 case 'remnote_create_note': {
                     const args = CreateNoteSchema.parse(request.params.arguments);
-                    const result = await wsServer.sendRequest('create_note', args);
-                    return {
-                        content: [{ type: 'text', text: JSON.stringify(result, null, 2) }],
-                    };
+                    result = await wsServer.sendRequest('create_note', args);
+                    break;
                 }
                 case 'remnote_search': {
                     const args = SearchSchema.parse(request.params.arguments);
-                    const result = await wsServer.sendRequest('search', args);
-                    return {
-                        content: [{ type: 'text', text: JSON.stringify(result, null, 2) }],
-                    };
+                    result = await wsServer.sendRequest('search', args);
+                    break;
                 }
                 case 'remnote_read_note': {
                     const args = ReadNoteSchema.parse(request.params.arguments);
-                    const result = await wsServer.sendRequest('read_note', args);
-                    return {
-                        content: [{ type: 'text', text: JSON.stringify(result, null, 2) }],
-                    };
+                    result = await wsServer.sendRequest('read_note', args);
+                    break;
                 }
                 case 'remnote_update_note': {
                     const args = UpdateNoteSchema.parse(request.params.arguments);
-                    const result = await wsServer.sendRequest('update_note', args);
-                    return {
-                        content: [{ type: 'text', text: JSON.stringify(result, null, 2) }],
-                    };
+                    result = await wsServer.sendRequest('update_note', args);
+                    break;
                 }
                 case 'remnote_append_journal': {
                     const args = AppendJournalSchema.parse(request.params.arguments);
-                    const result = await wsServer.sendRequest('append_journal', args);
-                    return {
-                        content: [{ type: 'text', text: JSON.stringify(result, null, 2) }],
-                    };
+                    result = await wsServer.sendRequest('append_journal', args);
+                    break;
                 }
                 case 'remnote_status': {
                     const connected = wsServer.isConnected();
                     if (!connected) {
-                        return {
-                            content: [
-                                {
-                                    type: 'text',
-                                    text: JSON.stringify({ connected: false, message: 'RemNote plugin not connected' }, null, 2),
-                                },
-                            ],
-                        };
+                        result = { connected: false, message: 'RemNote plugin not connected' };
                     }
-                    const result = await wsServer.sendRequest('get_status', {});
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: JSON.stringify({ connected: true, ...(typeof result === 'object' ? result : {}) }, null, 2),
-                            },
-                        ],
-                    };
+                    else {
+                        const statusResult = await wsServer.sendRequest('get_status', {});
+                        result = { connected: true, ...(typeof statusResult === 'object' ? statusResult : {}) };
+                    }
+                    break;
                 }
                 default:
-                    throw new Error(`Unknown tool: ${request.params.name}`);
+                    throw new Error(`Unknown tool: ${toolName}`);
             }
+            toolLogger.debug({
+                tool: toolName,
+                duration_ms: Date.now() - startTime,
+            }, 'Tool completed');
+            return {
+                content: [{ type: 'text', text: JSON.stringify(result, null, 2) }],
+            };
         }
         catch (error) {
+            toolLogger.error({
+                tool: toolName,
+                error: error instanceof Error ? error.message : String(error),
+            }, 'Tool failed');
             return {
                 content: [
                     {
@@ -157,15 +152,18 @@ export function registerAllTools(server, wsServer) {
         }
     });
     // Register list_tools handler
-    server.setRequestHandler(ListToolsRequestSchema, async () => ({
-        tools: [
-            CREATE_NOTE_TOOL,
-            SEARCH_TOOL,
-            READ_NOTE_TOOL,
-            UPDATE_NOTE_TOOL,
-            APPEND_JOURNAL_TOOL,
-            STATUS_TOOL,
-        ],
-    }));
+    server.setRequestHandler(ListToolsRequestSchema, async () => {
+        toolLogger.debug('Listing available tools');
+        return {
+            tools: [
+                CREATE_NOTE_TOOL,
+                SEARCH_TOOL,
+                READ_NOTE_TOOL,
+                UPDATE_NOTE_TOOL,
+                APPEND_JOURNAL_TOOL,
+                STATUS_TOOL,
+            ],
+        };
+    });
 }
 //# sourceMappingURL=index.js.map

package/dist/tools/index.js.map

@@ -1 +1 @@
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package/dist/websocket-server.d.ts

@@ -1,11 +1,15 @@
+import type { Logger } from './logger.js';
 export declare class WebSocketServer {
     private wss;
     private client;
     private port;
+    private logger;
+    private requestLogger;
+    private responseLogger;
     private pendingRequests;
     private connectCallbacks;
     private disconnectCallbacks;
-    constructor(port: number);
+    constructor(port: number, logger: Logger, requestLogger?: Logger, responseLogger?: Logger);
     start(): Promise<void>;
     stop(): Promise<void>;
     sendRequest(action: string, payload: Record<string, unknown>): Promise<unknown>;

package/dist/websocket-server.js

@@ -4,41 +4,48 @@ export class WebSocketServer {
     wss = null;
     client = null;
     port;
+    logger;
+    requestLogger = null;
+    responseLogger = null;
     pendingRequests = new Map();
     connectCallbacks = [];
     disconnectCallbacks = [];
-    constructor(port) {
+    constructor(port, logger, requestLogger, responseLogger) {
         this.port = port;
+        this.logger = logger.child({ context: 'websocket-server' });
+        this.requestLogger = requestLogger || null;
+        this.responseLogger = responseLogger || null;
     }
     async start() {
         return new Promise((resolve, reject) => {
             this.wss = new WSServer({ port: this.port }, () => {
+                this.logger.debug({ port: this.port }, 'WebSocket server started');
                 resolve();
             });
             this.wss.on('error', (error) => {
-                console.error('[WebSocket Server] Error:', error);
+                this.logger.error({ error }, 'WebSocket server error');
                 reject(error);
             });
             this.wss.on('connection', (ws) => {
                 // Only allow single client connection
                 if (this.client && this.client.readyState === WebSocket.OPEN) {
-                    console.error('[WebSocket Server] Rejecting connection: client already connected');
+                    this.logger.warn('Rejecting connection: client already connected');
                     ws.close(1008, 'Only one client allowed');
                     return;
                 }
                 this.client = ws;
-                console.error('[WebSocket Server] Client connected');
+                this.logger.info('WebSocket client connected');
                 this.connectCallbacks.forEach((cb) => cb());
                 ws.on('message', (data) => {
                     try {
                         this.handleMessage(data.toString());
                     }
                     catch (error) {
-                        console.error('[WebSocket Server] Error handling message:', error);
+                        this.logger.error({ error }, 'Error handling message');
                     }
                 });
                 ws.on('close', () => {
-                    console.error('[WebSocket Server] Client disconnected');
+                    this.logger.info('WebSocket client disconnected');
                     this.client = null;
                     // Reject all pending requests
                     for (const [_id, pending] of this.pendingRequests.entries()) {
@@ -49,7 +56,7 @@ export class WebSocketServer {
                     this.disconnectCallbacks.forEach((cb) => cb());
                 });
                 ws.on('error', (error) => {
-                    console.error('[WebSocket Server] Client error:', error);
+                    this.logger.error({ error }, 'WebSocket client error');
                 });
             });
         });
@@ -62,6 +69,7 @@ export class WebSocketServer {
             }
             if (this.wss) {
                 this.wss.close(() => {
+                    this.logger.debug('WebSocket server stopped');
                     this.wss = null;
                     resolve();
                 });
@@ -77,12 +85,44 @@ export class WebSocketServer {
         }
         const id = randomUUID();
         const request = { id, action, payload };
+        const startTime = Date.now();
+        this.logger.debug({ id, action }, 'Sending request');
+        // Log request if configured
+        if (this.requestLogger) {
+            this.requestLogger.info({ type: 'request', id, action, payload });
+        }
         return new Promise((resolve, reject) => {
             const timeout = setTimeout(() => {
                 this.pendingRequests.delete(id);
                 reject(new Error(`Request timeout: ${action}`));
             }, 5000);
-            this.pendingRequests.set(id, { resolve, reject, timeout });
+            this.pendingRequests.set(id, {
+                resolve: (result) => {
+                    // Log response if configured
+                    if (this.responseLogger) {
+                        this.responseLogger.info({
+                            type: 'response',
+                            id,
+                            duration_ms: Date.now() - startTime,
+                            error: null,
+                        });
+                    }
+                    resolve(result);
+                },
+                reject: (error) => {
+                    // Log error response if configured
+                    if (this.responseLogger) {
+                        this.responseLogger.info({
+                            type: 'response',
+                            id,
+                            duration_ms: Date.now() - startTime,
+                            error: error.message,
+                        });
+                    }
+                    reject(error);
+                },
+                timeout,
+            });
             try {
                 this.client.send(JSON.stringify(request));
             }
@@ -105,6 +145,9 @@ export class WebSocketServer {
     handleMessage(data) {
         try {
             const message = JSON.parse(data);
+            this.logger.debug({
+                type: 'type' in message ? message.type : 'response',
+            }, 'Received message');
             // Handle pong response to ping
             if ('type' in message && message.type === 'pong') {
                 return;
@@ -131,12 +174,12 @@ export class WebSocketServer {
                     }
                 }
                 else {
-                    console.error('[WebSocket Server] Received response for unknown request ID:', response.id);
+                    this.logger.warn({ id: response.id }, 'Unknown request ID');
                 }
             }
         }
         catch (error) {
-            console.error('[WebSocket Server] Error parsing message:', error);
+            this.logger.error({ error }, 'Error parsing message');
         }
     }
 }

package/dist/websocket-server.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "remnote-mcp-server",
-  "version": "0.2.1",
+  "version": "0.3.0",
   "description": "MCP server bridge for RemNote knowledge base",
   "type": "module",
   "main": "dist/index.js",
@@ -53,7 +53,9 @@
   "homepage": "https://github.com/robert7/remnote-mcp-server#readme",
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.26.0",
+    "commander": "^13.0.0",
     "express": "^5.2.0",
+    "pino": "^9.6.0",
     "ws": "^8.19.0",
     "zod": "^4.3.6"
   },
@@ -67,6 +69,7 @@
     "@vitest/ui": "^1.6.1",
     "eslint": "^8.57.1",
     "eslint-config-prettier": "^9.1.2",
+    "pino-pretty": "^11.0.0",
     "prettier": "^3.8.1",
     "tsx": "^4.21.0",
     "typescript": "^5.9.3",