reasonix 0.35.0 → 0.36.0

package/dist/cli/{chunk-RXGEGA7K.js.map → chunk-XQIFIB3U.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../../src/index/semantic/builder.ts","../../src/index/semantic/chunker.ts","../../src/index/semantic/embedding.ts","../../src/index/semantic/store.ts","../../src/index/semantic/ollama-launcher.ts"],"sourcesContent":["import { promises as fs } from \"node:fs\";\nimport path from \"node:path\";\nimport { type ResolvedEmbeddingConfig, resolveSemanticEmbeddingConfig } from \"../../config.js\";\nimport { type ResolvedIndexConfig, defaultIndexConfig } from \"../config.js\";\nimport { walkChunks } from \"./chunker.js\";\nimport type { CodeChunk, SkipReason } from \"./chunker.js\";\nimport { embed, embedAll, probeOllama } from \"./embedding.js\";\nimport type { EmbedOptions } from \"./embedding.js\";\nimport {\n  compareIndexIdentity,\n  normalize,\n  openStore,\n  readIndexMeta,\n  wipeStoreFiles,\n} from \"./store.js\";\nimport type { IndexEntry, IndexIdentity, IndexMismatch, SearchHit } from \"./store.js\";\n\nexport const INDEX_DIR_NAME = path.join(\".reasonix\", \"semantic\");\n\ntype BuildOptions = {\n  provider?: \"ollama\" | \"openai-compat\";\n  baseUrl?: string;\n  apiKey?: string;\n  model?: string;\n  extraBody?: Record<string, unknown>;\n  timeoutMs?: number;\n  signal?: AbortSignal;\n  windowLines?: number;\n  overlap?: number;\n  rebuild?: boolean;\n  indexConfig?: ResolvedIndexConfig;\n  onProgress?: (info: BuildProgress) => void;\n  configPath?: string;\n};\n\nexport type SkipBuckets = Record<SkipReason, number>;\n\nexport interface BuildProgress {\n  phase: \"setup\" | \"scan\" | \"embed\" | \"write\" | \"done\";\n  filesScanned?: number;\n  chunksTotal?: number;\n  chunksDone?: number;\n  filesSkipped?: number;\n  filesChanged?: number;\n  skipBuckets?: SkipBuckets;\n}\n\nexport interface BuildResult {\n  filesScanned: number;\n  filesChanged: number;\n  chunksAdded: number;\n  chunksRemoved: number;\n  chunksSkipped: number;\n  skipBuckets: SkipBuckets;\n  durationMs: number;\n}\n\nfunction emptyBuckets(): SkipBuckets {\n  return {\n    defaultDir: 0,\n    defaultFile: 0,\n    binaryExt: 0,\n    binaryContent: 0,\n    tooLarge: 0,\n    gitignore: 0,\n    pattern: 0,\n    readError: 0,\n  };\n}\n\nexport async function buildIndex(root: string, opts: BuildOptions = {}): Promise<BuildResult> {\n  const t0 = Date.now();\n  const indexDir = path.join(root, INDEX_DIR_NAME);\n  const resolved = resolveBuildEmbeddingConfig(opts);\n\n  opts.onProgress?.({ phase: \"setup\" });\n  throwIfAborted(opts.signal);\n  await probeEmbeddingProvider(resolved, opts.signal);\n  throwIfAborted(opts.signal);\n\n  if (opts.rebuild) await wipeStoreFiles(indexDir);\n  const store = await openStore(indexDir, {\n    provider: resolved.provider,\n    model: resolved.model,\n  });\n\n  const lastMtimes = store.fileMtimes();\n  const seenPaths = new Set<string>();\n  const fileChunks = new Map<string, { chunks: CodeChunk[]; mtimeMs: number }>();\n  let filesScanned = 0;\n  let filesSkipped = 0;\n  const skipBuckets = emptyBuckets();\n  for await (const chunk of walkChunks(root, {\n    windowLines: opts.windowLines,\n    overlap: opts.overlap,\n    config: opts.indexConfig ?? defaultIndexConfig(),\n    onSkip: (_p, reason) => {\n      skipBuckets[reason]++;\n    },\n  })) {\n    throwIfAborted(opts.signal);\n    seenPaths.add(chunk.path);\n    let bucket = fileChunks.get(chunk.path);\n    if (!bucket) {\n      filesScanned++;\n      const abs = path.join(root, chunk.path);\n      let mtimeMs = 0;\n      try {\n        const stat = await fs.stat(abs);\n        mtimeMs = stat.mtimeMs;\n      } catch {\n        continue;\n      }\n      const last = lastMtimes.get(chunk.path);\n      if (last !== undefined && last === mtimeMs && !opts.rebuild) {\n        filesSkipped++;\n        continue;\n      }\n      bucket = { chunks: [], mtimeMs };\n      fileChunks.set(chunk.path, bucket);\n    }\n    bucket.chunks.push(chunk);\n    opts.onProgress?.({ phase: \"scan\", filesScanned });\n  }\n\n  throwIfAborted(opts.signal);\n  const deletedPaths: string[] = [];\n  for (const oldPath of lastMtimes.keys()) {\n    if (!seenPaths.has(oldPath)) deletedPaths.push(oldPath);\n  }\n  const replacePaths = [...fileChunks.keys()].filter((p) => lastMtimes.has(p));\n  throwIfAborted(opts.signal);\n  const removed = await store.remove([...deletedPaths, ...replacePaths]);\n\n  let chunksAdded = 0;\n  let chunksSkipped = 0;\n  const filesChanged = fileChunks.size;\n  let chunksTotal = 0;\n  for (const { chunks } of fileChunks.values()) chunksTotal += chunks.length;\n  let chunksDone = 0;\n  for (const [, bucket] of fileChunks) {\n    throwIfAborted(opts.signal);\n    if (bucket.chunks.length === 0) continue;\n    const texts = bucket.chunks.map((c) => c.text);\n    const vectors = await embedAll(texts, {\n      ...resolved,\n      signal: opts.signal,\n      onProgress: (done, total) => {\n        opts.onProgress?.({\n          phase: \"embed\",\n          filesScanned,\n          filesChanged,\n          chunksTotal,\n          chunksDone: chunksDone + done,\n        });\n        if (done === total) chunksDone += total;\n      },\n      onError: (idx, err) => {\n        chunksSkipped++;\n        const c = bucket.chunks[idx];\n        const where = c ? `${c.path}:${c.startLine}-${c.endLine}` : `chunk #${idx}`;\n        const msg = err instanceof Error ? err.message : String(err);\n        process.stderr.write(`\\n  ! skipped ${where}: ${msg}\\n`);\n      },\n    });\n    throwIfAborted(opts.signal);\n    const entries: IndexEntry[] = [];\n    for (let i = 0; i < bucket.chunks.length; i++) {\n      const vec = vectors[i];\n      if (!vec) continue;\n      const c = bucket.chunks[i];\n      if (!c) continue;\n      normalize(vec);\n      entries.push({\n        path: c.path,\n        startLine: c.startLine,\n        endLine: c.endLine,\n        text: c.text,\n        embedding: vec,\n        mtimeMs: bucket.mtimeMs,\n      });\n    }\n    throwIfAborted(opts.signal);\n    if (entries.length > 0) await store.add(entries);\n    chunksAdded += entries.length;\n  }\n\n  throwIfAborted(opts.signal);\n  opts.onProgress?.({\n    phase: \"done\",\n    filesScanned,\n    filesSkipped,\n    filesChanged,\n    chunksTotal,\n    chunksDone,\n    skipBuckets,\n  });\n\n  return {\n    filesScanned,\n    filesChanged,\n    chunksAdded,\n    chunksRemoved: removed,\n    chunksSkipped,\n    skipBuckets,\n    durationMs: Date.now() - t0,\n  };\n}\n\ntype QueryOptions = {\n  provider?: \"ollama\" | \"openai-compat\";\n  baseUrl?: string;\n  apiKey?: string;\n  model?: string;\n  extraBody?: Record<string, unknown>;\n  timeoutMs?: number;\n  signal?: AbortSignal;\n  topK?: number;\n  minScore?: number;\n  configPath?: string;\n};\n\nexport async function querySemantic(\n  root: string,\n  query: string,\n  opts: QueryOptions = {},\n): Promise<SearchHit[] | null> {\n  const indexDir = path.join(root, INDEX_DIR_NAME);\n  const resolved = resolveQueryEmbeddingConfig(opts);\n  const store = await openStore(indexDir, {\n    provider: resolved.provider,\n    model: resolved.model,\n  });\n  if (store.empty) return null;\n  const qvec = await embed(query, { ...resolved, signal: opts.signal });\n  normalize(qvec);\n  return store.search(qvec, opts.topK ?? 8, opts.minScore ?? 0.3);\n}\n\nexport async function indexExists(root: string): Promise<boolean> {\n  const meta = path.join(root, INDEX_DIR_NAME, \"index.meta.json\");\n  try {\n    await fs.access(meta);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nexport async function indexCompatible(\n  root: string,\n  opts: { provider?: \"ollama\" | \"openai-compat\"; model?: string; configPath?: string } = {},\n): Promise<boolean> {\n  const meta = await readIndexMeta(path.join(root, INDEX_DIR_NAME));\n  if (!meta) return false;\n  return compareIndexIdentity(meta, resolveIndexIdentity(opts)) === null;\n}\n\nfunction resolveBuildEmbeddingConfig(opts: BuildOptions): ResolvedEmbeddingConfig {\n  if (opts.provider === \"openai-compat\") {\n    if (!opts.baseUrl || !opts.apiKey || !opts.model) {\n      throw new Error(\n        \"OpenAI-compatible embeddings require baseUrl, apiKey, and model when passed directly.\",\n      );\n    }\n    return {\n      provider: \"openai-compat\",\n      baseUrl: opts.baseUrl,\n      apiKey: opts.apiKey,\n      model: opts.model,\n      extraBody: opts.extraBody ?? {},\n      timeoutMs: opts.timeoutMs ?? 30_000,\n    };\n  }\n  if (opts.baseUrl || opts.model) {\n    return {\n      provider: \"ollama\",\n      baseUrl: opts.baseUrl ?? process.env.OLLAMA_URL ?? \"http://localhost:11434\",\n      model: opts.model ?? process.env.REASONIX_EMBED_MODEL ?? \"nomic-embed-text\",\n      timeoutMs: opts.timeoutMs ?? 30_000,\n    };\n  }\n  return resolveSemanticEmbeddingConfig(opts.configPath);\n}\n\nfunction resolveIndexIdentity(opts: {\n  provider?: \"ollama\" | \"openai-compat\";\n  model?: string;\n  configPath?: string;\n}): IndexIdentity {\n  if (opts.provider && opts.model) {\n    return { provider: opts.provider, model: opts.model };\n  }\n  const resolved = resolveSemanticEmbeddingConfig(opts.configPath);\n  return { provider: resolved.provider, model: resolved.model };\n}\n\nfunction resolveQueryEmbeddingConfig(opts: QueryOptions): ResolvedEmbeddingConfig {\n  return resolveBuildEmbeddingConfig(opts);\n}\n\nasync function probeEmbeddingProvider(\n  config: ResolvedEmbeddingConfig,\n  signal: AbortSignal | undefined,\n): Promise<void> {\n  if (config.provider === \"openai-compat\") return;\n  const probe = await probeOllama({ baseUrl: config.baseUrl, signal });\n  if (!probe.ok) {\n    throw new Error(\n      `Ollama is not reachable: ${probe.error}. Install from https://ollama.com, then \\`ollama serve\\` and \\`ollama pull ${config.model}\\`.`,\n    );\n  }\n}\n\nfunction throwIfAborted(signal: AbortSignal | undefined): void {\n  if (signal?.aborted) {\n    throw new Error(\"semantic indexing aborted\");\n  }\n}\n","/** Line-window chunker (not AST) — language-agnostic, every chunk carries exact startLine/endLine for cite-back. */\n\nimport { promises as fs } from \"node:fs\";\nimport path from \"node:path\";\nimport { type GitignoreLayer, ignoredByLayers, loadGitignoreAt } from \"../../gitignore.js\";\nimport {\n  type IndexFilters,\n  type ResolvedIndexConfig,\n  compileFilters,\n  defaultIndexConfig,\n} from \"../config.js\";\n\nexport interface CodeChunk {\n  /** Path relative to the index root, forward slashes. Stable across OS. */\n  path: string;\n  /** 1-based, inclusive. */\n  startLine: number;\n  endLine: number;\n  text: string;\n}\n\nexport type SkipReason =\n  | \"defaultDir\"\n  | \"defaultFile\"\n  | \"binaryExt\"\n  | \"binaryContent\"\n  | \"tooLarge\"\n  | \"gitignore\"\n  | \"pattern\"\n  | \"readError\";\n\nexport interface ChunkOptions {\n  /** Lines per window. Default 60. */\n  windowLines?: number;\n  /** Lines of overlap between consecutive windows. Default 12. */\n  overlap?: number;\n  /** Default 4000 — keeps unicode-heavy slices under nomic-embed-text's 8K-token window. */\n  maxChunkChars?: number;\n  /** Resolved exclude/limit settings. Falls back to package defaults when omitted. */\n  config?: ResolvedIndexConfig;\n  /** Tally callback for files that didn't make it into the index. */\n  onSkip?: (relPath: string, reason: SkipReason) => void;\n}\n\n/** Default character cap per chunk — sized for nomic-embed-text. */\nexport const DEFAULT_MAX_CHUNK_CHARS = 4000;\n\nexport function chunkText(\n  text: string,\n  filePath: string,\n  windowLines: number,\n  overlap: number,\n  maxChunkChars: number = DEFAULT_MAX_CHUNK_CHARS,\n): CodeChunk[] {\n  const lines = text.split(/\\r?\\n/);\n  if (lines.length === 0 || (lines.length === 1 && lines[0] === \"\")) return [];\n  const stride = Math.max(1, windowLines - overlap);\n  const chunks: CodeChunk[] = [];\n  for (let start = 0; start < lines.length; start += stride) {\n    const end = Math.min(lines.length, start + windowLines);\n    const slice = lines.slice(start, end).join(\"\\n\").trim();\n    if (slice.length === 0) {\n      if (end >= lines.length) break;\n      continue;\n    }\n    const window: CodeChunk = {\n      path: filePath,\n      startLine: start + 1,\n      endLine: end,\n      text: slice,\n    };\n    for (const sub of safeSplit(window, maxChunkChars)) chunks.push(sub);\n    if (end >= lines.length) break;\n  }\n  return chunks;\n}\n\nfunction safeSplit(chunk: CodeChunk, maxChars: number): CodeChunk[] {\n  if (chunk.text.length <= maxChars) return [chunk];\n  const lines = chunk.text.split(\"\\n\");\n  const out: CodeChunk[] = [];\n  let bufLines: string[] = [];\n  let bufStart = chunk.startLine;\n  let bufLen = 0;\n  const flush = (untilLineNo: number): void => {\n    if (bufLines.length === 0) return;\n    out.push({\n      path: chunk.path,\n      startLine: bufStart,\n      endLine: untilLineNo,\n      text: bufLines.join(\"\\n\"),\n    });\n    bufLines = [];\n    bufLen = 0;\n  };\n  for (let i = 0; i < lines.length; i++) {\n    const line = lines[i] ?? \"\";\n    const lineLen = line.length + 1;\n    if (lineLen > maxChars) {\n      flush(chunk.startLine + i - 1);\n      out.push({\n        path: chunk.path,\n        startLine: chunk.startLine + i,\n        endLine: chunk.startLine + i,\n        text: line.slice(0, maxChars),\n      });\n      bufStart = chunk.startLine + i + 1;\n      continue;\n    }\n    if (bufLen + lineLen > maxChars && bufLines.length > 0) {\n      flush(chunk.startLine + i - 1);\n      bufStart = chunk.startLine + i;\n    }\n    bufLines.push(line);\n    bufLen += lineLen;\n  }\n  flush(chunk.endLine);\n  return out;\n}\n\nfunction toForwardRel(root: string, abs: string): string {\n  return path.relative(root, abs).split(path.sep).join(\"/\");\n}\n\ninterface WalkFrame {\n  dir: string;\n  layers: readonly GitignoreLayer[];\n}\n\nexport async function* walkChunks(\n  root: string,\n  opts: ChunkOptions = {},\n): AsyncGenerator<CodeChunk> {\n  const windowLines = opts.windowLines ?? 60;\n  const overlap = Math.min(opts.overlap ?? 12, Math.max(0, windowLines - 1));\n  const maxChunkChars = opts.maxChunkChars ?? DEFAULT_MAX_CHUNK_CHARS;\n  const filters: IndexFilters = compileFilters(opts.config ?? defaultIndexConfig());\n  const onSkip = opts.onSkip ?? (() => {});\n\n  const initial: GitignoreLayer[] = [];\n  if (filters.respectGitignore) {\n    const rootIg = await loadGitignoreAt(root);\n    if (rootIg) initial.push({ dirAbs: root, ig: rootIg });\n  }\n\n  const stack: WalkFrame[] = [{ dir: root, layers: initial }];\n  while (stack.length > 0) {\n    const frame = stack.pop();\n    if (!frame) break;\n    const { dir, layers } = frame;\n    let entries: import(\"node:fs\").Dirent[];\n    try {\n      entries = await fs.readdir(dir, { withFileTypes: true });\n    } catch {\n      continue;\n    }\n    for (const entry of entries) {\n      const name = entry.name;\n      const abs = path.join(dir, name);\n      const rel = toForwardRel(root, abs);\n      if (entry.isDirectory()) {\n        if (filters.dirSet.has(name)) {\n          onSkip(rel, \"defaultDir\");\n          continue;\n        }\n        if (filters.respectGitignore && ignoredByLayers(layers, abs, true)) {\n          onSkip(rel, \"gitignore\");\n          continue;\n        }\n        if (filters.patternMatch(`${rel}/`) || filters.patternMatch(rel)) {\n          onSkip(rel, \"pattern\");\n          continue;\n        }\n        const childLayers = filters.respectGitignore ? await extendLayers(layers, abs) : layers;\n        stack.push({ dir: abs, layers: childLayers });\n        continue;\n      }\n      if (!entry.isFile()) continue;\n      if (filters.fileSet.has(name)) {\n        onSkip(rel, \"defaultFile\");\n        continue;\n      }\n      const ext = path.extname(name).toLowerCase();\n      if (filters.extSet.has(ext)) {\n        onSkip(rel, \"binaryExt\");\n        continue;\n      }\n      if (filters.respectGitignore && ignoredByLayers(layers, abs, false)) {\n        onSkip(rel, \"gitignore\");\n        continue;\n      }\n      if (filters.patternMatch(rel)) {\n        onSkip(rel, \"pattern\");\n        continue;\n      }\n      // Open once and check size + read against the same fd. Skipping\n      // a path-based `fs.stat` upstream is intentional — stat→open is\n      // the TOCTOU shape CodeQL flags as js/file-system-race.\n      const result = await readSizeBoundedFile(abs, filters.maxFileBytes);\n      if (result.kind === \"skip\") {\n        onSkip(rel, result.reason);\n        continue;\n      }\n      const text = result.text;\n      if (text.indexOf(\"\\0\") !== -1) {\n        onSkip(rel, \"binaryContent\");\n        continue;\n      }\n      for (const chunk of chunkText(text, rel, windowLines, overlap, maxChunkChars)) {\n        yield chunk;\n      }\n    }\n  }\n}\n\nasync function extendLayers(\n  layers: readonly GitignoreLayer[],\n  dirAbs: string,\n): Promise<readonly GitignoreLayer[]> {\n  const ig = await loadGitignoreAt(dirAbs);\n  return ig ? [...layers, { dirAbs, ig }] : layers;\n}\n\nexport async function chunkDirectory(root: string, opts: ChunkOptions = {}): Promise<CodeChunk[]> {\n  const out: CodeChunk[] = [];\n  for await (const c of walkChunks(root, opts)) out.push(c);\n  return out;\n}\n\ntype ReadFileResult = { kind: \"ok\"; text: string } | { kind: \"skip\"; reason: SkipReason };\n\nasync function readSizeBoundedFile(abs: string, maxBytes: number): Promise<ReadFileResult> {\n  try {\n    const fh = await fs.open(abs, \"r\");\n    try {\n      const stat = await fh.stat();\n      if (stat.size > maxBytes) return { kind: \"skip\", reason: \"tooLarge\" };\n      return { kind: \"ok\", text: await fh.readFile(\"utf8\") };\n    } finally {\n      await fh.close();\n    }\n  } catch {\n    return { kind: \"skip\", reason: \"readError\" };\n  }\n}\n","const DEFAULT_OLLAMA_URL = \"http://localhost:11434\";\nconst DEFAULT_EMBED_MODEL = \"nomic-embed-text\";\nconst DEFAULT_TIMEOUT_MS = 30_000;\n\nexport type EmbedOptions =\n  | {\n      provider?: \"ollama\";\n      baseUrl?: string;\n      model?: string;\n      timeoutMs?: number;\n      signal?: AbortSignal;\n    }\n  | {\n      provider: \"openai-compat\";\n      baseUrl: string;\n      apiKey: string;\n      model: string;\n      extraBody?: Record<string, unknown>;\n      timeoutMs?: number;\n      signal?: AbortSignal;\n    };\n\nexport class EmbeddingError extends Error {\n  constructor(\n    message: string,\n    public override readonly cause?: unknown,\n  ) {\n    super(message);\n    this.name = \"EmbeddingError\";\n  }\n}\n\nexport async function embed(text: string, opts: EmbedOptions = {}): Promise<Float32Array> {\n  if (opts.provider === \"openai-compat\") return await embedOpenAICompat(text, opts);\n  return await embedOllama(text, opts);\n}\n\nexport async function embedAll(\n  texts: readonly string[],\n  opts: EmbedOptions & {\n    onProgress?: (done: number, total: number) => void;\n    onError?: (index: number, err: unknown) => void;\n  } = {},\n): Promise<Array<Float32Array | null>> {\n  if (opts.provider === \"openai-compat\") return await embedAllOpenAICompat(texts, opts);\n  const out: Array<Float32Array | null> = [];\n  for (let i = 0; i < texts.length; i++) {\n    if (opts.signal?.aborted) throw new EmbeddingError(\"embedding aborted\");\n    const text = texts[i];\n    if (text === undefined) continue;\n    try {\n      out.push(await embed(text, opts));\n    } catch (err) {\n      if (isAbortError(err) || opts.signal?.aborted) {\n        throw new EmbeddingError(\"embedding aborted\", err);\n      }\n      opts.onError?.(i, err);\n      out.push(null);\n    }\n    opts.onProgress?.(i + 1, texts.length);\n  }\n  return out;\n}\n\nexport async function probeOllama(\n  opts: { baseUrl?: string; signal?: AbortSignal } = {},\n): Promise<{ ok: true; models: string[] } | { ok: false; error: string }> {\n  const baseUrl = opts.baseUrl ?? process.env.OLLAMA_URL ?? DEFAULT_OLLAMA_URL;\n  try {\n    const res = await fetch(`${baseUrl}/api/tags`, { signal: opts.signal });\n    if (!res.ok) return { ok: false, error: `Ollama returned ${res.status}` };\n    const json = (await res.json()) as { models?: Array<{ name?: string }> };\n    const models = (json.models ?? [])\n      .map((m) => m.name)\n      .filter((n): n is string => typeof n === \"string\");\n    return { ok: true, models };\n  } catch (err) {\n    const msg = err instanceof Error ? err.message : String(err);\n    return { ok: false, error: msg };\n  }\n}\n\nasync function embedOllama(\n  text: string,\n  opts: Extract<EmbedOptions, { provider?: \"ollama\" }>,\n): Promise<Float32Array> {\n  const baseUrl = opts.baseUrl ?? process.env.OLLAMA_URL ?? DEFAULT_OLLAMA_URL;\n  const model = opts.model ?? process.env.REASONIX_EMBED_MODEL ?? DEFAULT_EMBED_MODEL;\n  const timeoutMs = opts.timeoutMs ?? DEFAULT_TIMEOUT_MS;\n  const { controller, cleanup } = composeAbort(opts.signal, timeoutMs, \"embedding timeout\");\n\n  let res: Response;\n  try {\n    res = await fetch(`${baseUrl}/api/embeddings`, {\n      method: \"POST\",\n      headers: { \"content-type\": \"application/json\" },\n      body: JSON.stringify({ model, prompt: text }),\n      signal: controller.signal,\n    });\n  } catch (err) {\n    cleanup();\n    const msg = err instanceof Error ? err.message : String(err);\n    if (/ECONNREFUSED|connect ECONNREFUSED|fetch failed/i.test(msg)) {\n      throw new EmbeddingError(\n        `Cannot reach Ollama at ${baseUrl}. Install from https://ollama.com, then run \\`ollama pull ${model}\\` and \\`ollama serve\\`. Override the URL via OLLAMA_URL.`,\n        err,\n      );\n    }\n    throw new EmbeddingError(`embedding request failed: ${msg}`, err);\n  } finally {\n    cleanup();\n  }\n\n  if (!res.ok) {\n    const body = await res.text().catch(() => \"\");\n    if (res.status === 404 && /model.*not found/i.test(body)) {\n      throw new EmbeddingError(\n        `Embedding model \"${model}\" not pulled. Run \\`ollama pull ${model}\\` once, then retry.`,\n      );\n    }\n    throw new EmbeddingError(`Ollama returned ${res.status}: ${body.slice(0, 200)}`);\n  }\n\n  const json = (await res.json()) as { embedding?: unknown };\n  if (!json.embedding || !Array.isArray(json.embedding)) {\n    throw new EmbeddingError(\"Ollama response missing 'embedding' array\");\n  }\n  return toFloat32Array(json.embedding, \"embedding\");\n}\n\nasync function embedOpenAICompat(\n  text: string,\n  opts: Extract<EmbedOptions, { provider: \"openai-compat\" }>,\n): Promise<Float32Array> {\n  const vectors = await requestOpenAICompatEmbeddings(text, opts);\n  return vectors[0] ?? new Float32Array(0);\n}\n\nasync function embedAllOpenAICompat(\n  texts: readonly string[],\n  opts: Extract<EmbedOptions, { provider: \"openai-compat\" }> & {\n    onProgress?: (done: number, total: number) => void;\n    onError?: (index: number, err: unknown) => void;\n  },\n): Promise<Array<Float32Array | null>> {\n  if (texts.length === 0) return [];\n  if (opts.signal?.aborted) throw new EmbeddingError(\"embedding aborted\");\n  const vectors = await requestOpenAICompatEmbeddings([...texts], opts);\n  opts.onProgress?.(texts.length, texts.length);\n  return vectors;\n}\n\nasync function requestOpenAICompatEmbeddings(\n  input: string | string[],\n  opts: Extract<EmbedOptions, { provider: \"openai-compat\" }>,\n): Promise<Float32Array[]> {\n  const timeoutMs = opts.timeoutMs ?? DEFAULT_TIMEOUT_MS;\n  const { controller, cleanup } = composeAbort(opts.signal, timeoutMs, \"embedding timeout\");\n  const url = opts.baseUrl.trim();\n  const body = {\n    ...(opts.extraBody ?? {}),\n    model: opts.model,\n    input,\n    encoding_format: \"float\",\n  };\n\n  let res: Response;\n  try {\n    res = await fetch(url, {\n      method: \"POST\",\n      headers: {\n        authorization: `Bearer ${opts.apiKey}`,\n        \"content-type\": \"application/json\",\n      },\n      body: JSON.stringify(body),\n      signal: controller.signal,\n    });\n  } catch (err) {\n    cleanup();\n    if (isAbortError(err) || opts.signal?.aborted) {\n      throw new EmbeddingError(\"embedding aborted\", err);\n    }\n    const msg = err instanceof Error ? err.message : String(err);\n    throw new EmbeddingError(`Cannot reach OpenAI-compatible embeddings at ${url}: ${msg}`, err);\n  } finally {\n    cleanup();\n  }\n\n  if (!res.ok) {\n    const raw = await res.text().catch(() => \"\");\n    const bodyText = raw.slice(0, 300);\n    if (res.status === 401 || res.status === 403) {\n      throw new EmbeddingError(\n        `OpenAI-compatible API rejected the API key for ${url}. Response ${res.status}: ${bodyText}`,\n      );\n    }\n    if (res.status === 404) {\n      throw new EmbeddingError(\n        `Embeddings endpoint not found at ${url}. Check the configured API URL. Response ${res.status}: ${bodyText}`,\n      );\n    }\n    if (res.status === 400) {\n      throw new EmbeddingError(\n        `Embedding provider returned 400: ${bodyText}. Check model and custom request body fields.`,\n      );\n    }\n    throw new EmbeddingError(`OpenAI-compatible API returned ${res.status}: ${bodyText}`);\n  }\n\n  const json = (await res.json()) as {\n    data?: Array<{ index?: unknown; embedding?: unknown }>;\n  };\n  if (!Array.isArray(json.data)) {\n    throw new EmbeddingError(\"OpenAI-compatible response missing 'data' array\");\n  }\n  const size = Array.isArray(input) ? input.length : 1;\n  const out: Array<Float32Array | null> = new Array(size).fill(null);\n  for (const row of json.data) {\n    const rawIndex = row.index;\n    if (\n      typeof rawIndex !== \"number\" ||\n      !Number.isInteger(rawIndex) ||\n      rawIndex < 0 ||\n      rawIndex >= size\n    ) {\n      throw new EmbeddingError(\"OpenAI-compatible response returned an invalid embedding index\");\n    }\n    const index = rawIndex;\n    if (!Array.isArray(row.embedding)) {\n      throw new EmbeddingError(`OpenAI-compatible response missing embedding for index ${index}`);\n    }\n    out[index] = toFloat32Array(row.embedding, `data[${index}].embedding`);\n  }\n  for (let i = 0; i < out.length; i++) {\n    if (!out[i])\n      throw new EmbeddingError(`OpenAI-compatible response missing embedding at index ${i}`);\n  }\n  return out as Float32Array[];\n}\n\nfunction toFloat32Array(values: unknown[], label: string): Float32Array {\n  const out = new Float32Array(values.length);\n  for (let i = 0; i < values.length; i++) {\n    const value = values[i];\n    if (typeof value !== \"number\" || !Number.isFinite(value)) {\n      throw new EmbeddingError(`${label}[${i}] is not a finite number`);\n    }\n    out[i] = value;\n  }\n  return out;\n}\n\nfunction composeAbort(\n  signal: AbortSignal | undefined,\n  timeoutMs: number,\n  reason: string,\n): { controller: AbortController; cleanup: () => void } {\n  const controller = new AbortController();\n  const onCallerAbort = () => controller.abort(signal?.reason);\n  if (signal) {\n    if (signal.aborted) controller.abort(signal.reason);\n    else signal.addEventListener(\"abort\", onCallerAbort, { once: true });\n  }\n  const timer = setTimeout(() => controller.abort(new Error(reason)), timeoutMs);\n  return {\n    controller,\n    cleanup: () => {\n      clearTimeout(timer);\n      if (signal) signal.removeEventListener(\"abort\", onCallerAbort);\n    },\n  };\n}\n\nfunction isAbortError(err: unknown): boolean {\n  if (err instanceof Error) {\n    if (err.name === \"AbortError\") return true;\n    if (/aborted/i.test(err.message)) return true;\n  }\n  return false;\n}\n","/** JSONL append-only (Ctrl+C-safe) + linear cosine scan over unboxed Float32Array — fast enough for ≤10k chunks. */\n\nimport { promises as fs } from \"node:fs\";\nimport path from \"node:path\";\nimport type { EmbeddingProvider } from \"../../config.js\";\nimport type { CodeChunk } from \"./chunker.js\";\n\nexport interface IndexEntry extends CodeChunk {\n  embedding: Float32Array;\n  mtimeMs: number;\n}\n\nexport interface SearchHit {\n  entry: IndexEntry;\n  score: number;\n}\n\nexport type IndexMismatch = \"provider\" | \"model\";\n\nexport interface IndexIdentity {\n  provider: EmbeddingProvider;\n  model: string;\n}\n\nexport interface IndexMeta extends IndexIdentity {\n  version: number;\n  dim: number;\n  updatedAt: string;\n}\n\nexport const STORE_VERSION = 1;\n\nconst META_FILE = \"index.meta.json\";\nconst DATA_FILE = \"index.jsonl\";\n\nexport async function readIndexMeta(indexDir: string): Promise<IndexMeta | null> {\n  try {\n    const raw = await fs.readFile(path.join(indexDir, META_FILE), \"utf8\");\n    return normalizeMeta(JSON.parse(raw) as Partial<IndexMeta>);\n  } catch {\n    return null;\n  }\n}\n\nexport function compareIndexIdentity(\n  meta: IndexIdentity,\n  identity: IndexIdentity,\n): IndexMismatch | null {\n  if (meta.provider !== identity.provider) return \"provider\";\n  if (meta.model !== identity.model) return \"model\";\n  return null;\n}\n\nexport async function wipeStoreFiles(indexDir: string): Promise<void> {\n  await fs.rm(path.join(indexDir, DATA_FILE), { force: true });\n  await fs.rm(path.join(indexDir, META_FILE), { force: true });\n}\n\nexport class SemanticStore {\n  private entries: IndexEntry[] = [];\n  private byPath = new Map<string, IndexEntry[]>();\n  private dim = 0;\n\n  constructor(\n    public readonly indexDir: string,\n    public readonly identity: IndexIdentity,\n  ) {}\n\n  get provider(): EmbeddingProvider {\n    return this.identity.provider;\n  }\n\n  get model(): string {\n    return this.identity.model;\n  }\n\n  get empty(): boolean {\n    return this.entries.length === 0;\n  }\n\n  get size(): number {\n    return this.entries.length;\n  }\n\n  get all(): readonly IndexEntry[] {\n    return this.entries;\n  }\n\n  fileMtimes(): Map<string, number> {\n    const out = new Map<string, number>();\n    for (const [p, group] of this.byPath) {\n      const first = group[0];\n      if (first) out.set(p, first.mtimeMs);\n    }\n    return out;\n  }\n\n  async add(entries: readonly IndexEntry[]): Promise<void> {\n    if (entries.length === 0) return;\n    if (this.dim === 0) this.dim = entries[0]!.embedding.length;\n    const lines: string[] = [];\n    for (const e of entries) {\n      if (e.embedding.length !== this.dim) {\n        throw new Error(\n          `embedding dim mismatch: expected ${this.dim}, got ${e.embedding.length} for ${e.path}:${e.startLine}`,\n        );\n      }\n      this.entries.push(e);\n      const list = this.byPath.get(e.path);\n      if (list) list.push(e);\n      else this.byPath.set(e.path, [e]);\n      lines.push(serializeEntry(e));\n    }\n    await fs.mkdir(this.indexDir, { recursive: true });\n    await fs.appendFile(path.join(this.indexDir, DATA_FILE), `${lines.join(\"\\n\")}\\n`, \"utf8\");\n    await this.writeMeta();\n  }\n\n  async remove(paths: readonly string[]): Promise<number> {\n    if (paths.length === 0) return 0;\n    const drop = new Set(paths);\n    const before = this.entries.length;\n    this.entries = this.entries.filter((e) => !drop.has(e.path));\n    for (const p of paths) this.byPath.delete(p);\n    const removed = before - this.entries.length;\n    if (removed > 0) await this.flush();\n    return removed;\n  }\n\n  search(query: Float32Array, topK = 8, minScore = 0): SearchHit[] {\n    if (this.entries.length === 0) return [];\n    if (query.length !== this.dim && this.dim !== 0) {\n      throw new Error(`query dim ${query.length} ≠ index dim ${this.dim}`);\n    }\n    const heap: SearchHit[] = [];\n    for (const entry of this.entries) {\n      const score = dot(query, entry.embedding);\n      if (score < minScore) continue;\n      if (heap.length < topK) {\n        heap.push({ entry, score });\n        if (heap.length === topK) heap.sort((a, b) => a.score - b.score);\n      } else if (score > heap[0]!.score) {\n        heap[0] = { entry, score };\n        for (let i = 0; i < heap.length - 1; i++) {\n          if (heap[i]!.score > heap[i + 1]!.score) {\n            const tmp = heap[i]!;\n            heap[i] = heap[i + 1]!;\n            heap[i + 1] = tmp;\n          }\n        }\n      }\n    }\n    return heap.sort((a, b) => b.score - a.score);\n  }\n\n  private async flush(): Promise<void> {\n    await fs.mkdir(this.indexDir, { recursive: true });\n    const tmp = path.join(this.indexDir, `${DATA_FILE}.tmp`);\n    const final = path.join(this.indexDir, DATA_FILE);\n    const lines = this.entries.map(serializeEntry).join(\"\\n\");\n    await fs.writeFile(tmp, lines.length > 0 ? `${lines}\\n` : \"\", \"utf8\");\n    await fs.rename(tmp, final);\n    await this.writeMeta();\n  }\n\n  private async writeMeta(): Promise<void> {\n    const meta: IndexMeta = {\n      version: STORE_VERSION,\n      provider: this.provider,\n      model: this.model,\n      dim: this.dim,\n      updatedAt: new Date().toISOString(),\n    };\n    await fs.writeFile(\n      path.join(this.indexDir, META_FILE),\n      `${JSON.stringify(meta, null, 2)}\\n`,\n      \"utf8\",\n    );\n  }\n\n  async wipe(): Promise<void> {\n    this.entries = [];\n    this.byPath.clear();\n    this.dim = 0;\n    await wipeStoreFiles(this.indexDir);\n  }\n}\n\nexport async function openStore(indexDir: string, identity: IndexIdentity): Promise<SemanticStore> {\n  const store = new SemanticStore(indexDir, identity);\n  const dataPath = path.join(indexDir, DATA_FILE);\n\n  const meta = await readIndexMeta(indexDir);\n\n  if (meta) {\n    if (meta.version !== STORE_VERSION) {\n      throw new Error(\n        `Index format version ${meta.version} does not match current ${STORE_VERSION}. Run \\`reasonix index --rebuild\\`.`,\n      );\n    }\n    const mismatch = compareIndexIdentity(meta, identity);\n    if (mismatch !== null) {\n      throw new Error(\n        `Index was built with provider \"${meta.provider}\" model \"${meta.model}\" but current config is provider \"${identity.provider}\" model \"${identity.model}\". Run \\`reasonix index --rebuild\\`.`,\n      );\n    }\n  }\n\n  let raw: string;\n  try {\n    raw = await fs.readFile(dataPath, \"utf8\");\n  } catch {\n    return store;\n  }\n  for (const line of raw.split(\"\\n\")) {\n    if (line.length === 0) continue;\n    try {\n      const entry = deserializeEntry(line);\n      (store as unknown as { dim: number }).dim = entry.embedding.length;\n      (store as unknown as { entries: IndexEntry[] }).entries.push(entry);\n      const map = (store as unknown as { byPath: Map<string, IndexEntry[]> }).byPath;\n      const list = map.get(entry.path);\n      if (list) list.push(entry);\n      else map.set(entry.path, [entry]);\n    } catch {\n      /* tolerate malformed line */\n    }\n  }\n  return store;\n}\n\nexport function normalize(v: Float32Array): Float32Array {\n  let sum = 0;\n  for (let i = 0; i < v.length; i++) sum += v[i]! * v[i]!;\n  const inv = sum > 0 ? 1 / Math.sqrt(sum) : 0;\n  for (let i = 0; i < v.length; i++) v[i] = v[i]! * inv;\n  return v;\n}\n\nfunction dot(a: Float32Array, b: Float32Array): number {\n  let s = 0;\n  for (let i = 0; i < a.length; i++) s += a[i]! * b[i]!;\n  return s;\n}\n\nfunction serializeEntry(e: IndexEntry): string {\n  const buf = Buffer.from(e.embedding.buffer, e.embedding.byteOffset, e.embedding.byteLength);\n  return JSON.stringify({\n    p: e.path,\n    s: e.startLine,\n    e: e.endLine,\n    m: e.mtimeMs,\n    t: e.text,\n    v: buf.toString(\"base64\"),\n  });\n}\n\nfunction deserializeEntry(line: string): IndexEntry {\n  const parsed = JSON.parse(line) as {\n    p: string;\n    s: number;\n    e: number;\n    m: number;\n    t: string;\n    v: string;\n  };\n  const buf = Buffer.from(parsed.v, \"base64\");\n  const embedding = new Float32Array(\n    buf.buffer.slice(buf.byteOffset, buf.byteOffset + buf.byteLength),\n  );\n  return {\n    path: parsed.p,\n    startLine: parsed.s,\n    endLine: parsed.e,\n    mtimeMs: parsed.m,\n    text: parsed.t,\n    embedding: new Float32Array(embedding),\n  };\n}\n\nfunction normalizeMeta(meta: Partial<IndexMeta>): IndexMeta {\n  return {\n    version: typeof meta.version === \"number\" ? meta.version : STORE_VERSION,\n    provider: meta.provider === \"openai-compat\" ? \"openai-compat\" : \"ollama\",\n    model: typeof meta.model === \"string\" ? meta.model : \"\",\n    dim: typeof meta.dim === \"number\" ? meta.dim : 0,\n    updatedAt: typeof meta.updatedAt === \"string\" ? meta.updatedAt : new Date(0).toISOString(),\n  };\n}\n","/** Daemon spawn is detached + unref'd so it outlives the CLI; non-TTY shells error instead of prompting. */\n\nimport { spawn, spawnSync } from \"node:child_process\";\nimport { setTimeout as sleep } from \"node:timers/promises\";\nimport { probeOllama } from \"./embedding.js\";\n\nexport interface OllamaStatus {\n  /** `ollama` binary present on PATH. */\n  binaryFound: boolean;\n  /** HTTP daemon reachable at the configured base URL. */\n  daemonRunning: boolean;\n  /** True if `<model>` (or `<model>:latest`) appears in `ollama list`. */\n  modelPulled: boolean;\n  /** Model the caller asked about — echoed for log clarity. */\n  modelName: string;\n  /** Models the daemon reported, for diagnostics. Empty when daemon down. */\n  installedModels: string[];\n}\n\n/** Defers to `which`/`where` so we don't reimplement Windows App-installer resolution rules. */\nexport function findOllamaBinary(): string | null {\n  const cmd = process.platform === \"win32\" ? \"where\" : \"which\";\n  const out = spawnSync(cmd, [\"ollama\"], { encoding: \"utf8\" });\n  if (out.status !== 0) return null;\n  const first = out.stdout.split(/\\r?\\n/).find((l) => l.trim().length > 0);\n  return first ? first.trim() : null;\n}\n\n/** Treats `<model>` and `<model>:latest` as the same — Ollama appends `:latest` to plain pulls. */\nexport async function checkOllamaStatus(\n  modelName: string,\n  baseUrl?: string,\n): Promise<OllamaStatus> {\n  const binary = findOllamaBinary();\n  const probe = await probeOllama({ baseUrl });\n  const installedModels = probe.ok ? probe.models : [];\n  const wanted = modelName.includes(\":\") ? modelName : `${modelName}:latest`;\n  const modelPulled = installedModels.some((m) => m === modelName || m === wanted);\n  return {\n    binaryFound: binary !== null,\n    daemonRunning: probe.ok,\n    modelPulled,\n    modelName,\n    installedModels,\n  };\n}\n\n/** Detached + unref'd so daemon survives the CLI; output discarded so no ghost cmd window on Windows. */\nexport async function startOllamaDaemon(\n  opts: { baseUrl?: string; timeoutMs?: number; signal?: AbortSignal } = {},\n): Promise<{ ready: boolean; pid: number | null }> {\n  const timeoutMs = opts.timeoutMs ?? 15_000;\n  const child = spawn(\"ollama\", [\"serve\"], {\n    detached: true,\n    stdio: \"ignore\",\n    windowsHide: true,\n  });\n  child.unref();\n\n  const pid = child.pid ?? null;\n  const start = Date.now();\n  while (Date.now() - start < timeoutMs) {\n    if (opts.signal?.aborted) return { ready: false, pid };\n    const probe = await probeOllama({ baseUrl: opts.baseUrl, signal: opts.signal });\n    if (probe.ok) return { ready: true, pid };\n    await sleep(500);\n  }\n  return { ready: false, pid };\n}\n\n/** `onLine` called per line so the CLI can render its own bar instead of ollama's TTY output. */\nexport async function pullOllamaModel(\n  modelName: string,\n  opts: { onLine?: (line: string, stream: \"stdout\" | \"stderr\") => void; signal?: AbortSignal } = {},\n): Promise<number> {\n  return new Promise<number>((resolve) => {\n    const child = spawn(\"ollama\", [\"pull\", modelName], {\n      stdio: [\"ignore\", \"pipe\", \"pipe\"],\n      windowsHide: true,\n    });\n    if (opts.signal) {\n      const onAbort = () => child.kill();\n      opts.signal.addEventListener(\"abort\", onAbort, { once: true });\n      child.once(\"exit\", () => opts.signal?.removeEventListener(\"abort\", onAbort));\n    }\n    streamLines(child.stdout, (l) => opts.onLine?.(l, \"stdout\"));\n    streamLines(child.stderr, (l) => opts.onLine?.(l, \"stderr\"));\n    child.once(\"exit\", (code) => resolve(code ?? -1));\n    child.once(\"error\", () => resolve(-1));\n  });\n}\n\nfunction streamLines(stream: NodeJS.ReadableStream | null, cb: (line: string) => void): void {\n  if (!stream) return;\n  let buf = \"\";\n  stream.setEncoding(\"utf8\");\n  stream.on(\"data\", (chunk: string) => {\n    buf += chunk;\n    let nl = buf.indexOf(\"\\n\");\n    while (nl !== -1) {\n      const line = buf.slice(0, nl).replace(/\\r$/, \"\");\n      buf = buf.slice(nl + 1);\n      if (line.length > 0) cb(line);\n      nl = buf.indexOf(\"\\n\");\n    }\n  });\n  stream.on(\"end\", () => {\n    if (buf.length > 0) cb(buf.replace(/\\r$/, \"\"));\n  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defaultIndexConfig(),\n    onSkip: (_p, reason) => {\n      skipBuckets[reason]++;\n    },\n  })) {\n    throwIfAborted(opts.signal);\n    seenPaths.add(chunk.path);\n    let bucket = fileChunks.get(chunk.path);\n    if (!bucket) {\n      filesScanned++;\n      const abs = path.join(root, chunk.path);\n      let mtimeMs = 0;\n      try {\n        const stat = await fs.stat(abs);\n        mtimeMs = stat.mtimeMs;\n      } catch {\n        continue;\n      }\n      const last = lastMtimes.get(chunk.path);\n      if (last !== undefined && last === mtimeMs && !opts.rebuild) {\n        filesSkipped++;\n        continue;\n      }\n      bucket = { chunks: [], mtimeMs };\n      fileChunks.set(chunk.path, bucket);\n    }\n    bucket.chunks.push(chunk);\n    opts.onProgress?.({ phase: \"scan\", filesScanned });\n  }\n\n  throwIfAborted(opts.signal);\n  const deletedPaths: string[] = [];\n  for (const oldPath of lastMtimes.keys()) {\n    if (!seenPaths.has(oldPath)) deletedPaths.push(oldPath);\n  }\n  const replacePaths = [...fileChunks.keys()].filter((p) => lastMtimes.has(p));\n  throwIfAborted(opts.signal);\n  const removed = await store.remove([...deletedPaths, ...replacePaths]);\n\n  let chunksAdded = 0;\n  let chunksSkipped = 0;\n  const filesChanged = fileChunks.size;\n  let chunksTotal = 0;\n  for (const { chunks } of fileChunks.values()) chunksTotal += chunks.length;\n  let chunksDone = 0;\n  for (const [, bucket] of fileChunks) {\n    throwIfAborted(opts.signal);\n    if (bucket.chunks.length === 0) continue;\n    const texts = bucket.chunks.map((c) => c.text);\n    const vectors = await embedAll(texts, {\n      ...resolved,\n      signal: opts.signal,\n      onProgress: (done, total) => {\n        opts.onProgress?.({\n          phase: \"embed\",\n          filesScanned,\n          filesChanged,\n          chunksTotal,\n          chunksDone: chunksDone + done,\n        });\n        if (done === total) chunksDone += total;\n      },\n      onError: (idx, err) => {\n        chunksSkipped++;\n        const c = bucket.chunks[idx];\n        const where = c ? `${c.path}:${c.startLine}-${c.endLine}` : `chunk #${idx}`;\n        const msg = err instanceof Error ? err.message : String(err);\n        process.stderr.write(`\\n  ! skipped ${where}: ${msg}\\n`);\n      },\n    });\n    throwIfAborted(opts.signal);\n    const entries: IndexEntry[] = [];\n    for (let i = 0; i < bucket.chunks.length; i++) {\n      const vec = vectors[i];\n      if (!vec) continue;\n      const c = bucket.chunks[i];\n      if (!c) continue;\n      normalize(vec);\n      entries.push({\n        path: c.path,\n        startLine: c.startLine,\n        endLine: c.endLine,\n        text: c.text,\n        embedding: vec,\n        mtimeMs: bucket.mtimeMs,\n      });\n    }\n    throwIfAborted(opts.signal);\n    if (entries.length > 0) await store.add(entries);\n    chunksAdded += entries.length;\n  }\n\n  throwIfAborted(opts.signal);\n  opts.onProgress?.({\n    phase: \"done\",\n    filesScanned,\n    filesSkipped,\n    filesChanged,\n    chunksTotal,\n    chunksDone,\n    skipBuckets,\n  });\n\n  return {\n    filesScanned,\n    filesChanged,\n    chunksAdded,\n    chunksRemoved: removed,\n    chunksSkipped,\n    skipBuckets,\n    durationMs: Date.now() - t0,\n  };\n}\n\ntype QueryOptions = {\n  provider?: \"ollama\" | \"openai-compat\";\n  baseUrl?: string;\n  apiKey?: string;\n  model?: string;\n  extraBody?: Record<string, unknown>;\n  timeoutMs?: number;\n  signal?: AbortSignal;\n  topK?: number;\n  minScore?: number;\n  configPath?: string;\n};\n\nexport async function querySemantic(\n  root: string,\n  query: string,\n  opts: QueryOptions = {},\n): Promise<SearchHit[] | null> {\n  const indexDir = path.join(root, INDEX_DIR_NAME);\n  const resolved = resolveQueryEmbeddingConfig(opts);\n  const store = await openStore(indexDir, {\n    provider: resolved.provider,\n    model: resolved.model,\n  });\n  if (store.empty) return null;\n  const qvec = await embed(query, { ...resolved, signal: opts.signal });\n  normalize(qvec);\n  return store.search(qvec, opts.topK ?? 8, opts.minScore ?? 0.3);\n}\n\nexport async function indexExists(root: string): Promise<boolean> {\n  const meta = path.join(root, INDEX_DIR_NAME, \"index.meta.json\");\n  try {\n    await fs.access(meta);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nexport async function indexCompatible(\n  root: string,\n  opts: { provider?: \"ollama\" | \"openai-compat\"; model?: string; configPath?: string } = {},\n): Promise<boolean> {\n  const meta = await readIndexMeta(path.join(root, INDEX_DIR_NAME));\n  if (!meta) return false;\n  return compareIndexIdentity(meta, resolveIndexIdentity(opts)) === null;\n}\n\nfunction resolveBuildEmbeddingConfig(opts: BuildOptions): ResolvedEmbeddingConfig {\n  if (opts.provider === \"openai-compat\") {\n    if (!opts.baseUrl || !opts.apiKey || !opts.model) {\n      throw new Error(\n        \"OpenAI-compatible embeddings require baseUrl, apiKey, and model when passed directly.\",\n      );\n    }\n    return {\n      provider: \"openai-compat\",\n      baseUrl: opts.baseUrl,\n      apiKey: opts.apiKey,\n      model: opts.model,\n      extraBody: opts.extraBody ?? {},\n      timeoutMs: opts.timeoutMs ?? 30_000,\n    };\n  }\n  if (opts.baseUrl || opts.model) {\n    return {\n      provider: \"ollama\",\n      baseUrl: opts.baseUrl ?? process.env.OLLAMA_URL ?? \"http://localhost:11434\",\n      model: opts.model ?? process.env.REASONIX_EMBED_MODEL ?? \"nomic-embed-text\",\n      timeoutMs: opts.timeoutMs ?? 30_000,\n    };\n  }\n  return resolveSemanticEmbeddingConfig(opts.configPath);\n}\n\nfunction resolveIndexIdentity(opts: {\n  provider?: \"ollama\" | \"openai-compat\";\n  model?: string;\n  configPath?: string;\n}): IndexIdentity {\n  if (opts.provider && opts.model) {\n    return { provider: opts.provider, model: opts.model };\n  }\n  const resolved = resolveSemanticEmbeddingConfig(opts.configPath);\n  return { provider: resolved.provider, model: resolved.model };\n}\n\nfunction resolveQueryEmbeddingConfig(opts: QueryOptions): ResolvedEmbeddingConfig {\n  return resolveBuildEmbeddingConfig(opts);\n}\n\nasync function probeEmbeddingProvider(\n  config: ResolvedEmbeddingConfig,\n  signal: AbortSignal | undefined,\n): Promise<void> {\n  if (config.provider === \"openai-compat\") return;\n  const probe = await probeOllama({ baseUrl: config.baseUrl, signal });\n  if (!probe.ok) {\n    throw new Error(\n      `Ollama is not reachable: ${probe.error}. Install from https://ollama.com, then \\`ollama serve\\` and \\`ollama pull ${config.model}\\`.`,\n    );\n  }\n}\n\nfunction throwIfAborted(signal: AbortSignal | undefined): void {\n  if (signal?.aborted) {\n    throw new Error(\"semantic indexing aborted\");\n  }\n}\n","/** Line-window chunker (not AST) — language-agnostic, every chunk carries exact startLine/endLine for cite-back. */\n\nimport { promises as fs } from \"node:fs\";\nimport path from \"node:path\";\nimport { type GitignoreLayer, ignoredByLayers, loadGitignoreAt } from \"../../gitignore.js\";\nimport {\n  type IndexFilters,\n  type ResolvedIndexConfig,\n  compileFilters,\n  defaultIndexConfig,\n} from \"../config.js\";\n\nexport interface CodeChunk {\n  /** Path relative to the index root, forward slashes. Stable across OS. */\n  path: string;\n  /** 1-based, inclusive. */\n  startLine: number;\n  endLine: number;\n  text: string;\n}\n\nexport type SkipReason =\n  | \"defaultDir\"\n  | \"defaultFile\"\n  | \"binaryExt\"\n  | \"binaryContent\"\n  | \"tooLarge\"\n  | \"gitignore\"\n  | \"pattern\"\n  | \"readError\";\n\nexport interface ChunkOptions {\n  /** Lines per window. Default 60. */\n  windowLines?: number;\n  /** Lines of overlap between consecutive windows. Default 12. */\n  overlap?: number;\n  /** Default 4000 — keeps unicode-heavy slices under nomic-embed-text's 8K-token window. */\n  maxChunkChars?: number;\n  /** Resolved exclude/limit settings. Falls back to package defaults when omitted. */\n  config?: ResolvedIndexConfig;\n  /** Tally callback for files that didn't make it into the index. */\n  onSkip?: (relPath: string, reason: SkipReason) => void;\n}\n\n/** Default character cap per chunk — sized for nomic-embed-text. */\nexport const DEFAULT_MAX_CHUNK_CHARS = 4000;\n\nexport function chunkText(\n  text: string,\n  filePath: string,\n  windowLines: number,\n  overlap: number,\n  maxChunkChars: number = DEFAULT_MAX_CHUNK_CHARS,\n): CodeChunk[] {\n  const lines = text.split(/\\r?\\n/);\n  if (lines.length === 0 || (lines.length === 1 && lines[0] === \"\")) return [];\n  const stride = Math.max(1, windowLines - overlap);\n  const chunks: CodeChunk[] = [];\n  for (let start = 0; start < lines.length; start += stride) {\n    const end = Math.min(lines.length, start + windowLines);\n    const slice = lines.slice(start, end).join(\"\\n\").trim();\n    if (slice.length === 0) {\n      if (end >= lines.length) break;\n      continue;\n    }\n    const window: CodeChunk = {\n      path: filePath,\n      startLine: start + 1,\n      endLine: end,\n      text: slice,\n    };\n    for (const sub of safeSplit(window, maxChunkChars)) chunks.push(sub);\n    if (end >= lines.length) break;\n  }\n  return chunks;\n}\n\nfunction safeSplit(chunk: CodeChunk, maxChars: number): CodeChunk[] {\n  if (chunk.text.length <= maxChars) return [chunk];\n  const lines = chunk.text.split(\"\\n\");\n  const out: CodeChunk[] = [];\n  let bufLines: string[] = [];\n  let bufStart = chunk.startLine;\n  let bufLen = 0;\n  const flush = (untilLineNo: number): void => {\n    if (bufLines.length === 0) return;\n    out.push({\n      path: chunk.path,\n      startLine: bufStart,\n      endLine: untilLineNo,\n      text: bufLines.join(\"\\n\"),\n    });\n    bufLines = [];\n    bufLen = 0;\n  };\n  for (let i = 0; i < lines.length; i++) {\n    const line = lines[i] ?? \"\";\n    const lineLen = line.length + 1;\n    if (lineLen > maxChars) {\n      flush(chunk.startLine + i - 1);\n      out.push({\n        path: chunk.path,\n        startLine: chunk.startLine + i,\n        endLine: chunk.startLine + i,\n        text: line.slice(0, maxChars),\n      });\n      bufStart = chunk.startLine + i + 1;\n      continue;\n    }\n    if (bufLen + lineLen > maxChars && bufLines.length > 0) {\n      flush(chunk.startLine + i - 1);\n      bufStart = chunk.startLine + i;\n    }\n    bufLines.push(line);\n    bufLen += lineLen;\n  }\n  flush(chunk.endLine);\n  return out;\n}\n\nfunction toForwardRel(root: string, abs: string): string {\n  return path.relative(root, abs).split(path.sep).join(\"/\");\n}\n\ninterface WalkFrame {\n  dir: string;\n  layers: readonly GitignoreLayer[];\n}\n\nexport async function* walkChunks(\n  root: string,\n  opts: ChunkOptions = {},\n): AsyncGenerator<CodeChunk> {\n  const windowLines = opts.windowLines ?? 60;\n  const overlap = Math.min(opts.overlap ?? 12, Math.max(0, windowLines - 1));\n  const maxChunkChars = opts.maxChunkChars ?? DEFAULT_MAX_CHUNK_CHARS;\n  const filters: IndexFilters = compileFilters(opts.config ?? defaultIndexConfig());\n  const onSkip = opts.onSkip ?? (() => {});\n\n  const initial: GitignoreLayer[] = [];\n  if (filters.respectGitignore) {\n    const rootIg = await loadGitignoreAt(root);\n    if (rootIg) initial.push({ dirAbs: root, ig: rootIg });\n  }\n\n  const stack: WalkFrame[] = [{ dir: root, layers: initial }];\n  while (stack.length > 0) {\n    const frame = stack.pop();\n    if (!frame) break;\n    const { dir, layers } = frame;\n    let entries: import(\"node:fs\").Dirent[];\n    try {\n      entries = await fs.readdir(dir, { withFileTypes: true });\n    } catch {\n      continue;\n    }\n    for (const entry of entries) {\n      const name = entry.name;\n      const abs = path.join(dir, name);\n      const rel = toForwardRel(root, abs);\n      if (entry.isDirectory()) {\n        if (filters.dirSet.has(name)) {\n          onSkip(rel, \"defaultDir\");\n          continue;\n        }\n        if (filters.respectGitignore && ignoredByLayers(layers, abs, true)) {\n          onSkip(rel, \"gitignore\");\n          continue;\n        }\n        if (filters.patternMatch(`${rel}/`) || filters.patternMatch(rel)) {\n          onSkip(rel, \"pattern\");\n          continue;\n        }\n        const childLayers = filters.respectGitignore ? await extendLayers(layers, abs) : layers;\n        stack.push({ dir: abs, layers: childLayers });\n        continue;\n      }\n      if (!entry.isFile()) continue;\n      if (filters.fileSet.has(name)) {\n        onSkip(rel, \"defaultFile\");\n        continue;\n      }\n      const ext = path.extname(name).toLowerCase();\n      if (filters.extSet.has(ext)) {\n        onSkip(rel, \"binaryExt\");\n        continue;\n      }\n      if (filters.respectGitignore && ignoredByLayers(layers, abs, false)) {\n        onSkip(rel, \"gitignore\");\n        continue;\n      }\n      if (filters.patternMatch(rel)) {\n        onSkip(rel, \"pattern\");\n        continue;\n      }\n      // Open once and check size + read against the same fd. Skipping\n      // a path-based `fs.stat` upstream is intentional — stat→open is\n      // the TOCTOU shape CodeQL flags as js/file-system-race.\n      const result = await readSizeBoundedFile(abs, filters.maxFileBytes);\n      if (result.kind === \"skip\") {\n        onSkip(rel, result.reason);\n        continue;\n      }\n      const text = result.text;\n      if (text.indexOf(\"\\0\") !== -1) {\n        onSkip(rel, \"binaryContent\");\n        continue;\n      }\n      for (const chunk of chunkText(text, rel, windowLines, overlap, maxChunkChars)) {\n        yield chunk;\n      }\n    }\n  }\n}\n\nasync function extendLayers(\n  layers: readonly GitignoreLayer[],\n  dirAbs: string,\n): Promise<readonly GitignoreLayer[]> {\n  const ig = await loadGitignoreAt(dirAbs);\n  return ig ? [...layers, { dirAbs, ig }] : layers;\n}\n\nexport async function chunkDirectory(root: string, opts: ChunkOptions = {}): Promise<CodeChunk[]> {\n  const out: CodeChunk[] = [];\n  for await (const c of walkChunks(root, opts)) out.push(c);\n  return out;\n}\n\ntype ReadFileResult = { kind: \"ok\"; text: string } | { kind: \"skip\"; reason: SkipReason };\n\nasync function readSizeBoundedFile(abs: string, maxBytes: number): Promise<ReadFileResult> {\n  try {\n    const fh = await fs.open(abs, \"r\");\n    try {\n      const stat = await fh.stat();\n      if (stat.size > maxBytes) return { kind: \"skip\", reason: \"tooLarge\" };\n      return { kind: \"ok\", text: await fh.readFile(\"utf8\") };\n    } finally {\n      await fh.close();\n    }\n  } catch {\n    return { kind: \"skip\", reason: \"readError\" };\n  }\n}\n","const DEFAULT_OLLAMA_URL = \"http://localhost:11434\";\nconst DEFAULT_EMBED_MODEL = \"nomic-embed-text\";\nconst DEFAULT_TIMEOUT_MS = 30_000;\n\nexport type EmbedOptions =\n  | {\n      provider?: \"ollama\";\n      baseUrl?: string;\n      model?: string;\n      timeoutMs?: number;\n      signal?: AbortSignal;\n    }\n  | {\n      provider: \"openai-compat\";\n      baseUrl: string;\n      apiKey: string;\n      model: string;\n      extraBody?: Record<string, unknown>;\n      timeoutMs?: number;\n      signal?: AbortSignal;\n    };\n\nexport class EmbeddingError extends Error {\n  constructor(\n    message: string,\n    public override readonly cause?: unknown,\n  ) {\n    super(message);\n    this.name = \"EmbeddingError\";\n  }\n}\n\nexport async function embed(text: string, opts: EmbedOptions = {}): Promise<Float32Array> {\n  if (opts.provider === \"openai-compat\") return await embedOpenAICompat(text, opts);\n  return await embedOllama(text, opts);\n}\n\nexport async function embedAll(\n  texts: readonly string[],\n  opts: EmbedOptions & {\n    onProgress?: (done: number, total: number) => void;\n    onError?: (index: number, err: unknown) => void;\n  } = {},\n): Promise<Array<Float32Array | null>> {\n  if (opts.provider === \"openai-compat\") return await embedAllOpenAICompat(texts, opts);\n  const out: Array<Float32Array | null> = [];\n  for (let i = 0; i < texts.length; i++) {\n    if (opts.signal?.aborted) throw new EmbeddingError(\"embedding aborted\");\n    const text = texts[i];\n    if (text === undefined) continue;\n    try {\n      out.push(await embed(text, opts));\n    } catch (err) {\n      if (isAbortError(err) || opts.signal?.aborted) {\n        throw new EmbeddingError(\"embedding aborted\", err);\n      }\n      opts.onError?.(i, err);\n      out.push(null);\n    }\n    opts.onProgress?.(i + 1, texts.length);\n  }\n  return out;\n}\n\nexport async function probeOllama(\n  opts: { baseUrl?: string; signal?: AbortSignal } = {},\n): Promise<{ ok: true; models: string[] } | { ok: false; error: string }> {\n  const baseUrl = opts.baseUrl ?? process.env.OLLAMA_URL ?? DEFAULT_OLLAMA_URL;\n  try {\n    const res = await fetch(`${baseUrl}/api/tags`, { signal: opts.signal });\n    if (!res.ok) return { ok: false, error: `Ollama returned ${res.status}` };\n    const json = (await res.json()) as { models?: Array<{ name?: string }> };\n    const models = (json.models ?? [])\n      .map((m) => m.name)\n      .filter((n): n is string => typeof n === \"string\");\n    return { ok: true, models };\n  } catch (err) {\n    const msg = err instanceof Error ? err.message : String(err);\n    return { ok: false, error: msg };\n  }\n}\n\nasync function embedOllama(\n  text: string,\n  opts: Extract<EmbedOptions, { provider?: \"ollama\" }>,\n): Promise<Float32Array> {\n  const baseUrl = opts.baseUrl ?? process.env.OLLAMA_URL ?? DEFAULT_OLLAMA_URL;\n  const model = opts.model ?? process.env.REASONIX_EMBED_MODEL ?? DEFAULT_EMBED_MODEL;\n  const timeoutMs = opts.timeoutMs ?? DEFAULT_TIMEOUT_MS;\n  const { controller, cleanup } = composeAbort(opts.signal, timeoutMs, \"embedding timeout\");\n\n  let res: Response;\n  try {\n    res = await fetch(`${baseUrl}/api/embeddings`, {\n      method: \"POST\",\n      headers: { \"content-type\": \"application/json\" },\n      body: JSON.stringify({ model, prompt: text }),\n      signal: controller.signal,\n    });\n  } catch (err) {\n    cleanup();\n    const msg = err instanceof Error ? err.message : String(err);\n    if (/ECONNREFUSED|connect ECONNREFUSED|fetch failed/i.test(msg)) {\n      throw new EmbeddingError(\n        `Cannot reach Ollama at ${baseUrl}. Install from https://ollama.com, then run \\`ollama pull ${model}\\` and \\`ollama serve\\`. Override the URL via OLLAMA_URL.`,\n        err,\n      );\n    }\n    throw new EmbeddingError(`embedding request failed: ${msg}`, err);\n  } finally {\n    cleanup();\n  }\n\n  if (!res.ok) {\n    const body = await res.text().catch(() => \"\");\n    if (res.status === 404 && /model.*not found/i.test(body)) {\n      throw new EmbeddingError(\n        `Embedding model \"${model}\" not pulled. Run \\`ollama pull ${model}\\` once, then retry.`,\n      );\n    }\n    throw new EmbeddingError(`Ollama returned ${res.status}: ${body.slice(0, 200)}`);\n  }\n\n  const json = (await res.json()) as { embedding?: unknown };\n  if (!json.embedding || !Array.isArray(json.embedding)) {\n    throw new EmbeddingError(\"Ollama response missing 'embedding' array\");\n  }\n  return toFloat32Array(json.embedding, \"embedding\");\n}\n\nasync function embedOpenAICompat(\n  text: string,\n  opts: Extract<EmbedOptions, { provider: \"openai-compat\" }>,\n): Promise<Float32Array> {\n  const vectors = await requestOpenAICompatEmbeddings(text, opts);\n  return vectors[0] ?? new Float32Array(0);\n}\n\nasync function embedAllOpenAICompat(\n  texts: readonly string[],\n  opts: Extract<EmbedOptions, { provider: \"openai-compat\" }> & {\n    onProgress?: (done: number, total: number) => void;\n    onError?: (index: number, err: unknown) => void;\n  },\n): Promise<Array<Float32Array | null>> {\n  if (texts.length === 0) return [];\n  if (opts.signal?.aborted) throw new EmbeddingError(\"embedding aborted\");\n  const vectors = await requestOpenAICompatEmbeddings([...texts], opts);\n  opts.onProgress?.(texts.length, texts.length);\n  return vectors;\n}\n\nasync function requestOpenAICompatEmbeddings(\n  input: string | string[],\n  opts: Extract<EmbedOptions, { provider: \"openai-compat\" }>,\n): Promise<Float32Array[]> {\n  const timeoutMs = opts.timeoutMs ?? DEFAULT_TIMEOUT_MS;\n  const { controller, cleanup } = composeAbort(opts.signal, timeoutMs, \"embedding timeout\");\n  const url = opts.baseUrl.trim();\n  const body = {\n    ...(opts.extraBody ?? {}),\n    model: opts.model,\n    input,\n    encoding_format: \"float\",\n  };\n\n  let res: Response;\n  try {\n    res = await fetch(url, {\n      method: \"POST\",\n      headers: {\n        authorization: `Bearer ${opts.apiKey}`,\n        \"content-type\": \"application/json\",\n      },\n      body: JSON.stringify(body),\n      signal: controller.signal,\n    });\n  } catch (err) {\n    cleanup();\n    if (isAbortError(err) || opts.signal?.aborted) {\n      throw new EmbeddingError(\"embedding aborted\", err);\n    }\n    const msg = err instanceof Error ? err.message : String(err);\n    throw new EmbeddingError(`Cannot reach OpenAI-compatible embeddings at ${url}: ${msg}`, err);\n  } finally {\n    cleanup();\n  }\n\n  if (!res.ok) {\n    const raw = await res.text().catch(() => \"\");\n    const bodyText = raw.slice(0, 300);\n    if (res.status === 401 || res.status === 403) {\n      throw new EmbeddingError(\n        `OpenAI-compatible API rejected the API key for ${url}. Response ${res.status}: ${bodyText}`,\n      );\n    }\n    if (res.status === 404) {\n      throw new EmbeddingError(\n        `Embeddings endpoint not found at ${url}. Check the configured API URL. Response ${res.status}: ${bodyText}`,\n      );\n    }\n    if (res.status === 400) {\n      throw new EmbeddingError(\n        `Embedding provider returned 400: ${bodyText}. Check model and custom request body fields.`,\n      );\n    }\n    throw new EmbeddingError(`OpenAI-compatible API returned ${res.status}: ${bodyText}`);\n  }\n\n  const json = (await res.json()) as {\n    data?: Array<{ index?: unknown; embedding?: unknown }>;\n  };\n  if (!Array.isArray(json.data)) {\n    throw new EmbeddingError(\"OpenAI-compatible response missing 'data' array\");\n  }\n  const size = Array.isArray(input) ? input.length : 1;\n  const out: Array<Float32Array | null> = new Array(size).fill(null);\n  for (const row of json.data) {\n    const rawIndex = row.index;\n    if (\n      typeof rawIndex !== \"number\" ||\n      !Number.isInteger(rawIndex) ||\n      rawIndex < 0 ||\n      rawIndex >= size\n    ) {\n      throw new EmbeddingError(\"OpenAI-compatible response returned an invalid embedding index\");\n    }\n    const index = rawIndex;\n    if (!Array.isArray(row.embedding)) {\n      throw new EmbeddingError(`OpenAI-compatible response missing embedding for index ${index}`);\n    }\n    out[index] = toFloat32Array(row.embedding, `data[${index}].embedding`);\n  }\n  for (let i = 0; i < out.length; i++) {\n    if (!out[i])\n      throw new EmbeddingError(`OpenAI-compatible response missing embedding at index ${i}`);\n  }\n  return out as Float32Array[];\n}\n\nfunction toFloat32Array(values: unknown[], label: string): Float32Array {\n  const out = new Float32Array(values.length);\n  for (let i = 0; i < values.length; i++) {\n    const value = values[i];\n    if (typeof value !== \"number\" || !Number.isFinite(value)) {\n      throw new EmbeddingError(`${label}[${i}] is not a finite number`);\n    }\n    out[i] = value;\n  }\n  return out;\n}\n\nfunction composeAbort(\n  signal: AbortSignal | undefined,\n  timeoutMs: number,\n  reason: string,\n): { controller: AbortController; cleanup: () => void } {\n  const controller = new AbortController();\n  const onCallerAbort = () => controller.abort(signal?.reason);\n  if (signal) {\n    if (signal.aborted) controller.abort(signal.reason);\n    else signal.addEventListener(\"abort\", onCallerAbort, { once: true });\n  }\n  const timer = setTimeout(() => controller.abort(new Error(reason)), timeoutMs);\n  return {\n    controller,\n    cleanup: () => {\n      clearTimeout(timer);\n      if (signal) signal.removeEventListener(\"abort\", onCallerAbort);\n    },\n  };\n}\n\nfunction isAbortError(err: unknown): boolean {\n  if (err instanceof Error) {\n    if (err.name === \"AbortError\") return true;\n    if (/aborted/i.test(err.message)) return true;\n  }\n  return false;\n}\n","/** JSONL append-only (Ctrl+C-safe) + linear cosine scan over unboxed Float32Array — fast enough for ≤10k chunks. */\n\nimport { promises as fs } from \"node:fs\";\nimport path from \"node:path\";\nimport type { EmbeddingProvider } from \"../../config.js\";\nimport type { CodeChunk } from \"./chunker.js\";\n\nexport interface IndexEntry extends CodeChunk {\n  embedding: Float32Array;\n  mtimeMs: number;\n}\n\nexport interface SearchHit {\n  entry: IndexEntry;\n  score: number;\n}\n\nexport type IndexMismatch = \"provider\" | \"model\";\n\nexport interface IndexIdentity {\n  provider: EmbeddingProvider;\n  model: string;\n}\n\nexport interface IndexMeta extends IndexIdentity {\n  version: number;\n  dim: number;\n  updatedAt: string;\n}\n\nexport const STORE_VERSION = 1;\n\nconst META_FILE = \"index.meta.json\";\nconst DATA_FILE = \"index.jsonl\";\n\nexport async function readIndexMeta(indexDir: string): Promise<IndexMeta | null> {\n  try {\n    const raw = await fs.readFile(path.join(indexDir, META_FILE), \"utf8\");\n    return normalizeMeta(JSON.parse(raw) as Partial<IndexMeta>);\n  } catch {\n    return null;\n  }\n}\n\nexport function compareIndexIdentity(\n  meta: IndexIdentity,\n  identity: IndexIdentity,\n): IndexMismatch | null {\n  if (meta.provider !== identity.provider) return \"provider\";\n  if (meta.model !== identity.model) return \"model\";\n  return null;\n}\n\nexport async function wipeStoreFiles(indexDir: string): Promise<void> {\n  await fs.rm(path.join(indexDir, DATA_FILE), { force: true });\n  await fs.rm(path.join(indexDir, META_FILE), { force: true });\n}\n\nexport class SemanticStore {\n  private entries: IndexEntry[] = [];\n  private byPath = new Map<string, IndexEntry[]>();\n  private dim = 0;\n\n  constructor(\n    public readonly indexDir: string,\n    public readonly identity: IndexIdentity,\n  ) {}\n\n  get provider(): EmbeddingProvider {\n    return this.identity.provider;\n  }\n\n  get model(): string {\n    return this.identity.model;\n  }\n\n  get empty(): boolean {\n    return this.entries.length === 0;\n  }\n\n  get size(): number {\n    return this.entries.length;\n  }\n\n  get all(): readonly IndexEntry[] {\n    return this.entries;\n  }\n\n  fileMtimes(): Map<string, number> {\n    const out = new Map<string, number>();\n    for (const [p, group] of this.byPath) {\n      const first = group[0];\n      if (first) out.set(p, first.mtimeMs);\n    }\n    return out;\n  }\n\n  async add(entries: readonly IndexEntry[]): Promise<void> {\n    if (entries.length === 0) return;\n    if (this.dim === 0) this.dim = entries[0]!.embedding.length;\n    const lines: string[] = [];\n    for (const e of entries) {\n      if (e.embedding.length !== this.dim) {\n        throw new Error(\n          `embedding dim mismatch: expected ${this.dim}, got ${e.embedding.length} for ${e.path}:${e.startLine}`,\n        );\n      }\n      this.entries.push(e);\n      const list = this.byPath.get(e.path);\n      if (list) list.push(e);\n      else this.byPath.set(e.path, [e]);\n      lines.push(serializeEntry(e));\n    }\n    await fs.mkdir(this.indexDir, { recursive: true });\n    await fs.appendFile(path.join(this.indexDir, DATA_FILE), `${lines.join(\"\\n\")}\\n`, \"utf8\");\n    await this.writeMeta();\n  }\n\n  async remove(paths: readonly string[]): Promise<number> {\n    if (paths.length === 0) return 0;\n    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1; i++) {\n          if (heap[i]!.score > heap[i + 1]!.score) {\n            const tmp = heap[i]!;\n            heap[i] = heap[i + 1]!;\n            heap[i + 1] = tmp;\n          }\n        }\n      }\n    }\n    return heap.sort((a, b) => b.score - a.score);\n  }\n\n  private async flush(): Promise<void> {\n    await fs.mkdir(this.indexDir, { recursive: true });\n    const tmp = path.join(this.indexDir, `${DATA_FILE}.tmp`);\n    const final = path.join(this.indexDir, DATA_FILE);\n    const lines = this.entries.map(serializeEntry).join(\"\\n\");\n    await fs.writeFile(tmp, lines.length > 0 ? `${lines}\\n` : \"\", \"utf8\");\n    await fs.rename(tmp, final);\n    await this.writeMeta();\n  }\n\n  private async writeMeta(): Promise<void> {\n    const meta: IndexMeta = {\n      version: STORE_VERSION,\n      provider: this.provider,\n      model: this.model,\n      dim: this.dim,\n      updatedAt: new Date().toISOString(),\n    };\n    await fs.writeFile(\n      path.join(this.indexDir, META_FILE),\n      `${JSON.stringify(meta, null, 2)}\\n`,\n      \"utf8\",\n    );\n  }\n\n  async wipe(): Promise<void> {\n    this.entries = [];\n    this.byPath.clear();\n    this.dim = 0;\n    await wipeStoreFiles(this.indexDir);\n  }\n}\n\nexport async function openStore(indexDir: string, identity: IndexIdentity): Promise<SemanticStore> {\n  const store = new SemanticStore(indexDir, identity);\n  const dataPath = path.join(indexDir, DATA_FILE);\n\n  const meta = await readIndexMeta(indexDir);\n\n  if (meta) {\n    if (meta.version !== STORE_VERSION) {\n      throw new Error(\n        `Index format version ${meta.version} does not match current ${STORE_VERSION}. Run \\`reasonix index --rebuild\\`.`,\n      );\n    }\n    const mismatch = compareIndexIdentity(meta, identity);\n    if (mismatch !== null) {\n      throw new Error(\n        `Index was built with provider \"${meta.provider}\" model \"${meta.model}\" but current config is provider \"${identity.provider}\" model \"${identity.model}\". Run \\`reasonix index --rebuild\\`.`,\n      );\n    }\n  }\n\n  let raw: string;\n  try {\n    raw = await fs.readFile(dataPath, \"utf8\");\n  } catch {\n    return store;\n  }\n  for (const line of raw.split(\"\\n\")) {\n    if (line.length === 0) continue;\n    try {\n      const entry = deserializeEntry(line);\n      (store as unknown as { dim: number }).dim = entry.embedding.length;\n      (store as unknown as { entries: IndexEntry[] }).entries.push(entry);\n      const map = (store as unknown as { byPath: Map<string, IndexEntry[]> }).byPath;\n      const list = map.get(entry.path);\n      if (list) list.push(entry);\n      else map.set(entry.path, [entry]);\n    } catch {\n      /* tolerate malformed line */\n    }\n  }\n  return store;\n}\n\nexport function normalize(v: Float32Array): Float32Array {\n  let sum = 0;\n  for (let i = 0; i < v.length; i++) sum += v[i]! * v[i]!;\n  const inv = sum > 0 ? 1 / Math.sqrt(sum) : 0;\n  for (let i = 0; i < v.length; i++) v[i] = v[i]! * inv;\n  return v;\n}\n\nfunction dot(a: Float32Array, b: Float32Array): number {\n  let s = 0;\n  for (let i = 0; i < a.length; i++) s += a[i]! * b[i]!;\n  return s;\n}\n\nfunction serializeEntry(e: IndexEntry): string {\n  const buf = Buffer.from(e.embedding.buffer, e.embedding.byteOffset, e.embedding.byteLength);\n  return JSON.stringify({\n    p: e.path,\n    s: e.startLine,\n    e: e.endLine,\n    m: e.mtimeMs,\n    t: e.text,\n    v: buf.toString(\"base64\"),\n  });\n}\n\nfunction deserializeEntry(line: string): IndexEntry {\n  const parsed = JSON.parse(line) as {\n    p: string;\n    s: number;\n    e: number;\n    m: number;\n    t: string;\n    v: string;\n  };\n  const buf = Buffer.from(parsed.v, \"base64\");\n  const embedding = new Float32Array(\n    buf.buffer.slice(buf.byteOffset, buf.byteOffset + buf.byteLength),\n  );\n  return {\n    path: parsed.p,\n    startLine: parsed.s,\n    endLine: parsed.e,\n    mtimeMs: parsed.m,\n    text: parsed.t,\n    embedding: new Float32Array(embedding),\n  };\n}\n\nfunction normalizeMeta(meta: Partial<IndexMeta>): IndexMeta {\n  return {\n    version: typeof meta.version === \"number\" ? meta.version : STORE_VERSION,\n    provider: meta.provider === \"openai-compat\" ? \"openai-compat\" : \"ollama\",\n    model: typeof meta.model === \"string\" ? meta.model : \"\",\n    dim: typeof meta.dim === \"number\" ? meta.dim : 0,\n    updatedAt: typeof meta.updatedAt === \"string\" ? meta.updatedAt : new Date(0).toISOString(),\n  };\n}\n","/** Daemon spawn is detached + unref'd so it outlives the CLI; non-TTY shells error instead of prompting. */\n\nimport { spawn, spawnSync } from \"node:child_process\";\nimport { existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { setTimeout as sleep } from \"node:timers/promises\";\nimport { probeOllama } from \"./embedding.js\";\n\nexport interface OllamaStatus {\n  /** `ollama` binary resolvable on PATH or at the Windows installer path. */\n  binaryFound: boolean;\n  /** HTTP daemon reachable at the configured base URL. */\n  daemonRunning: boolean;\n  /** True if `<model>` (or `<model>:latest`) appears in `ollama list`. */\n  modelPulled: boolean;\n  /** Model the caller asked about — echoed for log clarity. */\n  modelName: string;\n  /** Models the daemon reported, for diagnostics. 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baseUrl?: string,\n): Promise<OllamaStatus> {\n  const binary = findOllamaBinary();\n  const probe = await probeOllama({ baseUrl });\n  const installedModels = probe.ok ? probe.models : [];\n  const wanted = modelName.includes(\":\") ? modelName : `${modelName}:latest`;\n  const modelPulled = installedModels.some((m) => m === modelName || m === wanted);\n  return {\n    binaryFound: binary !== null,\n    daemonRunning: probe.ok,\n    modelPulled,\n    modelName,\n    installedModels,\n  };\n}\n\n/** Detached + unref'd so daemon survives the CLI; output discarded so no ghost cmd window on Windows. */\nexport async function startOllamaDaemon(\n  opts: { baseUrl?: string; timeoutMs?: number; signal?: AbortSignal } = {},\n): Promise<{ ready: boolean; pid: number | null }> {\n  const timeoutMs = opts.timeoutMs ?? 15_000;\n  const child = spawn(findOllamaBinary() ?? \"ollama\", [\"serve\"], {\n    detached: true,\n    stdio: \"ignore\",\n    windowsHide: true,\n  });\n  child.unref();\n\n  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package/dist/cli/{chunk-2EBODRRO.js → chunk-ZJR4QLXB.js}

@@ -26,6 +26,9 @@ function ThemeProvider({
 function useThemeTokens() {
   return React.useContext(ThemeContext);
 }
+function useTheme() {
+  return useThemeTokens();
+}
 
 // src/cli/ui/theme.ts
 import React2 from "react";
@@ -141,9 +144,10 @@ var FG2 = proxyThemeValue(() => fgFromTheme(currentTheme()));
 export {
   ThemeProvider,
   useThemeTokens,
+  useTheme,
   useColor,
   GRADIENT,
   COLOR,
   GLYPH
 };
-//# sourceMappingURL=chunk-2EBODRRO.js.map
+//# sourceMappingURL=chunk-ZJR4QLXB.js.map

package/dist/cli/{chunk-2EBODRRO.js.map → chunk-ZJR4QLXB.js.map}

@@ -1 +1 @@
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+{"version":3,"sources":["../../src/cli/ui/theme/context.tsx","../../src/cli/ui/theme.ts"],"sourcesContent":["import React from \"react\";\nimport {\n  DEFAULT_THEME_NAME,\n  THEMES,\n  type ThemeName,\n  type ThemeTokens,\n  resolveThemeName,\n  setActiveTheme,\n} from \"./tokens.js\";\n\nconst ThemeContext = React.createContext<ThemeTokens>(THEMES[DEFAULT_THEME_NAME]);\n\nexport function ThemeProvider({\n  children,\n  name,\n}: {\n  children: React.ReactNode;\n  name?: string | null;\n}): React.ReactElement {\n  const theme = THEMES[resolveThemeName(name)];\n  const restoreActiveTheme = setActiveTheme(theme);\n\n  React.useLayoutEffect(() => restoreActiveTheme, [restoreActiveTheme]);\n\n  return <ThemeContext.Provider value={theme}>{children}</ThemeContext.Provider>;\n}\n\nexport function useThemeTokens(): ThemeTokens {\n  return React.useContext(ThemeContext);\n}\n\nexport function useTheme(): ThemeTokens {\n  return useThemeTokens();\n}\n\nexport type { ThemeName, ThemeTokens };\n","import React from \"react\";\nimport { useThemeTokens } from \"./theme/context.js\";\nimport {\n  CARD,\n  FG as TOKEN_FG,\n  SURFACE as TOKEN_SURFACE,\n  TONE,\n  TONE_ACTIVE,\n  type ThemeTokens,\n} from \"./theme/tokens.js\";\n\nexport type UiColor = ReturnType<typeof colorFromTheme>;\nexport type UiGradient = ReturnType<typeof gradientFromTheme>;\nexport type UiSurface = ReturnType<typeof surfaceFromTheme>;\nexport type UiFg = ReturnType<typeof fgFromTheme>;\n\nexport function gradientFromTheme(theme: ThemeTokens): ReadonlyArray<string> {\n  return [\n    theme.tone.ok,\n    theme.tone.brand,\n    theme.tone.info,\n    theme.toneActive.brand,\n    theme.toneActive.violet,\n    theme.tone.accent,\n    theme.toneActive.accent,\n    theme.tone.err,\n  ];\n}\n\nexport function colorFromTheme(theme: ThemeTokens) {\n  return {\n    primary: theme.tone.brand,\n    accent: theme.tone.accent,\n    brand: theme.tone.ok,\n\n    user: theme.tone.brand,\n    assistant: theme.tone.ok,\n    tool: theme.tone.warn,\n    toolErr: theme.tone.err,\n    info: theme.fg.sub,\n    warn: theme.tone.warn,\n    err: theme.tone.err,\n    ok: theme.tone.ok,\n  } as const;\n}\n\nexport function surfaceFromTheme(theme: ThemeTokens) {\n  return {\n    canvas: theme.surface.bg,\n    shell: theme.surface.bgInput,\n    card: theme.surface.bgElev,\n    elev: theme.surface.bgElev,\n    sel: theme.surface.bgInput,\n    line: theme.fg.faint,\n    lineSoft: theme.fg.meta,\n  } as const;\n}\n\nexport function fgFromTheme(theme: ThemeTokens) {\n  return {\n    strong: theme.fg.strong,\n    default: theme.fg.body,\n    dim: theme.fg.sub,\n    faint: theme.fg.meta,\n    ghost: theme.fg.faint,\n  } as const;\n}\n\nfunction proxyThemeValue<T extends object>(build: () => T): T {\n  const target = build();\n  return new Proxy(target, {\n    get(_target, prop: string | symbol) {\n      return build()[prop as keyof T];\n    },\n    getOwnPropertyDescriptor(_target, prop: string | symbol) {\n      return Reflect.getOwnPropertyDescriptor(build(), prop);\n    },\n    has(_target, prop: string | symbol) {\n      return prop in build();\n    },\n    ownKeys() {\n      return Reflect.ownKeys(build());\n    },\n  });\n}\n\nfunction currentTheme(): ThemeTokens {\n  return {\n    fg: TOKEN_FG,\n    tone: TONE,\n    toneActive: TONE_ACTIVE,\n    surface: TOKEN_SURFACE,\n    card: CARD,\n  };\n}\n\nexport function useGradient(): UiGradient {\n  const theme = useThemeTokens();\n  return React.useMemo(() => gradientFromTheme(theme), [theme]);\n}\n\nexport function useColor(): UiColor {\n  const theme = useThemeTokens();\n  return React.useMemo(() => colorFromTheme(theme), [theme]);\n}\n\nexport function useUiSurface(): UiSurface {\n  const theme = useThemeTokens();\n  return React.useMemo(() => surfaceFromTheme(theme), [theme]);\n}\n\nexport function useUiFg(): UiFg {\n  const theme = useThemeTokens();\n  return React.useMemo(() => fgFromTheme(theme), [theme]);\n}\n\nexport const GRADIENT = proxyThemeValue(() => gradientFromTheme(currentTheme()));\nexport const COLOR = proxyThemeValue(() => colorFromTheme(currentTheme()));\n\nexport const GLYPH = {\n  brand: \"◈\",\n  user: \"◇\",\n  assistant: \"◆\",\n  toolOk: \"▣\",\n  toolErr: \"▥\",\n  warn: \"▲\",\n  err: \"✦\",\n  arrow: \"›\",\n  bullet: \"·\",\n  bar: \"▎\",\n  thinBar: \"▏\",\n  block: \"█\",\n  shade1: \"░\",\n  shade2: \"▒\",\n  shade3: \"▓\",\n\n  done: \"✓\",\n  cur: \"▸\",\n  pending: \"○\",\n  fail: \"✗\",\n  running: \"●\",\n\n  branch: \"┣\",\n  branchEnd: \"┗\",\n  branchStub: \"┃\",\n  rule: \"─\",\n\n  spinFrames: [\"◐\", \"◓\", \"◑\", \"◒\"] as readonly string[],\n} as const;\n\nexport const SURFACE = proxyThemeValue(() => surfaceFromTheme(currentTheme()));\nexport const FG = proxyThemeValue(() => fgFromTheme(currentTheme()));\n\nexport function gradientCells(\n  width: number,\n  glyph: string = GLYPH.block,\n  gradient: ReadonlyArray<string> = GRADIENT,\n): Array<{ ch: string; color: string }> {\n  const cells: Array<{ ch: string; color: string }> = [];\n  if (width <= 0) return cells;\n  const last = gradient.length - 1;\n  for (let i = 0; i < width; i++) {\n    if (last <= 0) {\n      cells.push({ ch: glyph, color: gradient[0] ?? COLOR.primary });\n      continue;\n    }\n    const t = width === 1 ? 0 : (i * last) / (width - 1);\n    const lo = Math.floor(t);\n    const hi = Math.min(last, lo + 1);\n    const color = t - lo < 0.5 ? gradient[lo]! : gradient[hi]!;\n    cells.push({ ch: glyph, color });\n  }\n  return cells;\n}\n"],"mappings":";;;;;;;;;;;;;;AAAA,OAAO,WAAW;AAUlB,IAAM,eAAe,MAAM,cAA2B,OAAO,kBAAkB,CAAC;AAEzE,SAAS,cAAc;AAAA,EAC5B;AAAA,EACA;AACF,GAGuB;AACrB,QAAM,QAAQ,OAAO,iBAAiB,IAAI,CAAC;AAC3C,QAAM,qBAAqB,eAAe,KAAK;AAE/C,QAAM,gBAAgB,MAAM,oBAAoB,CAAC,kBAAkB,CAAC;AAEpE,SAAO,oCAAC,aAAa,UAAb,EAAsB,OAAO,SAAQ,QAAS;AACxD;AAEO,SAAS,iBAA8B;AAC5C,SAAO,MAAM,WAAW,YAAY;AACtC;AAEO,SAAS,WAAwB;AACtC,SAAO,eAAe;AACxB;;;ACjCA,OAAOA,YAAW;AAgBX,SAAS,kBAAkB,OAA2C;AAC3E,SAAO;AAAA,IACL,MAAM,KAAK;AAAA,IACX,MAAM,KAAK;AAAA,IACX,MAAM,KAAK;AAAA,IACX,MAAM,WAAW;AAAA,IACjB,MAAM,WAAW;AAAA,IACjB,MAAM,KAAK;AAAA,IACX,MAAM,WAAW;AAAA,IACjB,MAAM,KAAK;AAAA,EACb;AACF;AAEO,SAAS,eAAe,OAAoB;AACjD,SAAO;AAAA,IACL,SAAS,MAAM,KAAK;AAAA,IACpB,QAAQ,MAAM,KAAK;AAAA,IACnB,OAAO,MAAM,KAAK;AAAA,IAElB,MAAM,MAAM,KAAK;AAAA,IACjB,WAAW,MAAM,KAAK;AAAA,IACtB,MAAM,MAAM,KAAK;AAAA,IACjB,SAAS,MAAM,KAAK;AAAA,IACpB,MAAM,MAAM,GAAG;AAAA,IACf,MAAM,MAAM,KAAK;AAAA,IACjB,KAAK,MAAM,KAAK;AAAA,IAChB,IAAI,MAAM,KAAK;AAAA,EACjB;AACF;AAEO,SAAS,iBAAiB,OAAoB;AACnD,SAAO;AAAA,IACL,QAAQ,MAAM,QAAQ;AAAA,IACtB,OAAO,MAAM,QAAQ;AAAA,IACrB,MAAM,MAAM,QAAQ;AAAA,IACpB,MAAM,MAAM,QAAQ;AAAA,IACpB,KAAK,MAAM,QAAQ;AAAA,IACnB,MAAM,MAAM,GAAG;AAAA,IACf,UAAU,MAAM,GAAG;AAAA,EACrB;AACF;AAEO,SAAS,YAAY,OAAoB;AAC9C,SAAO;AAAA,IACL,QAAQ,MAAM,GAAG;AAAA,IACjB,SAAS,MAAM,GAAG;AAAA,IAClB,KAAK,MAAM,GAAG;AAAA,IACd,OAAO,MAAM,GAAG;AAAA,IAChB,OAAO,MAAM,GAAG;AAAA,EAClB;AACF;AAEA,SAAS,gBAAkC,OAAmB;AAC5D,QAAM,SAAS,MAAM;AACrB,SAAO,IAAI,MAAM,QAAQ;AAAA,IACvB,IAAI,SAAS,MAAuB;AAClC,aAAO,MAAM,EAAE,IAAe;AAAA,IAChC;AAAA,IACA,yBAAyB,SAAS,MAAuB;AACvD,aAAO,QAAQ,yBAAyB,MAAM,GAAG,IAAI;AAAA,IACvD;AAAA,IACA,IAAI,SAAS,MAAuB;AAClC,aAAO,QAAQ,MAAM;AAAA,IACvB;AAAA,IACA,UAAU;AACR,aAAO,QAAQ,QAAQ,MAAM,CAAC;AAAA,IAChC;AAAA,EACF,CAAC;AACH;AAEA,SAAS,eAA4B;AACnC,SAAO;AAAA,IACL,IAAI;AAAA,IACJ,MAAM;AAAA,IACN,YAAY;AAAA,IACZ,SAAS;AAAA,IACT,MAAM;AAAA,EACR;AACF;AAOO,SAAS,WAAoB;AAClC,QAAM,QAAQ,eAAe;AAC7B,SAAOC,OAAM,QAAQ,MAAM,eAAe,KAAK,GAAG,CAAC,KAAK,CAAC;AAC3D;AAYO,IAAM,WAAW,gBAAgB,MAAM,kBAAkB,aAAa,CAAC,CAAC;AACxE,IAAM,QAAQ,gBAAgB,MAAM,eAAe,aAAa,CAAC,CAAC;AAElE,IAAM,QAAQ;AAAA,EACnB,OAAO;AAAA,EACP,MAAM;AAAA,EACN,WAAW;AAAA,EACX,QAAQ;AAAA,EACR,SAAS;AAAA,EACT,MAAM;AAAA,EACN,KAAK;AAAA,EACL,OAAO;AAAA,EACP,QAAQ;AAAA,EACR,KAAK;AAAA,EACL,SAAS;AAAA,EACT,OAAO;AAAA,EACP,QAAQ;AAAA,EACR,QAAQ;AAAA,EACR,QAAQ;AAAA,EAER,MAAM;AAAA,EACN,KAAK;AAAA,EACL,SAAS;AAAA,EACT,MAAM;AAAA,EACN,SAAS;AAAA,EAET,QAAQ;AAAA,EACR,WAAW;AAAA,EACX,YAAY;AAAA,EACZ,MAAM;AAAA,EAEN,YAAY,CAAC,UAAK,UAAK,UAAK,QAAG;AACjC;AAEO,IAAMC,WAAU,gBAAgB,MAAM,iBAAiB,aAAa,CAAC,CAAC;AACtE,IAAMC,MAAK,gBAAgB,MAAM,YAAY,aAAa,CAAC,CAAC;","names":["React","React","SURFACE","FG"]}

package/dist/cli/{code-XBEFHXVM.js → code-KJB3WDU6.js}

@@ -1,10 +1,10 @@
 #!/usr/bin/env node
 import {
   bootstrapSemanticSearchInCodeMode
-} from "./chunk-SW3CCXEV.js";
+} from "./chunk-4Q3GRJIU.js";
 import {
   chatCommand
-} from "./chunk-GPHBJWCV.js";
+} from "./chunk-EN4LAZW5.js";
 import "./chunk-BQNUJJN7.js";
 import {
   preflightStdioSpec
@@ -20,52 +20,53 @@ import {
   registerMemoryTools,
   registerPlanTool,
   registerTodoTool
-} from "./chunk-N2IC4XDL.js";
+} from "./chunk-QRUQ2BFT.js";
 import {
   parseMcpSpec
-} from "./chunk-I6YIAK6C.js";
+} from "./chunk-UNMYFZPZ.js";
 import "./chunk-XJLZ4HKU.js";
 import "./chunk-XHQIK7B6.js";
 import "./chunk-ZU45XW3P.js";
-import "./chunk-KZHMKOJH.js";
-import "./chunk-2EBODRRO.js";
+import "./chunk-T52GAWPP.js";
+import "./chunk-ZJR4QLXB.js";
 import "./chunk-MHDNZXJJ.js";
-import "./chunk-IDP65VCC.js";
+import "./chunk-BJ376EN3.js";
 import "./chunk-DAEAAVDF.js";
 import "./chunk-KMWKGPFZ.js";
 import "./chunk-3Q3C4W66.js";
 import "./chunk-4DCHFFEY.js";
-import "./chunk-RJ5GUVS2.js";
-import "./chunk-G3XNWSFN.js";
+import "./chunk-WJ3YX4PZ.js";
+import "./chunk-2MCYGFLK.js";
 import "./chunk-SOZE7V7V.js";
+import "./chunk-G3XNWSFN.js";
 import {
   JobRegistry,
   registerShellTools
-} from "./chunk-SX6L4HZZ.js";
+} from "./chunk-QPNZWUZF.js";
 import {
   SkillStore
 } from "./chunk-KJQIA4US.js";
 import {
   MCP_CATALOG
 } from "./chunk-FM57FNPJ.js";
-import "./chunk-RXGEGA7K.js";
-import "./chunk-JJTOZPM3.js";
-import "./chunk-2AWTGJ2C.js";
+import "./chunk-XQIFIB3U.js";
+import "./chunk-IPCPEZWQ.js";
 import "./chunk-5X7LZJDE.js";
 import {
   sanitizeName
 } from "./chunk-DFP4YSVM.js";
-import "./chunk-SN7YH6FC.js";
+import "./chunk-MLXUGPJE.js";
 import {
   defaultConfigPath,
   loadEditMode,
   loadProjectShellAllowed,
   readConfig,
   writeConfig
-} from "./chunk-5JXXEPDM.js";
+} from "./chunk-BHLHOS5Y.js";
 import "./chunk-WUI3P4RA.js";
 import "./chunk-ZTLZO42A.js";
 import "./chunk-ORM6PK57.js";
+import "./chunk-CRPQUBP6.js";
 
 // src/cli/commands/code.tsx
 import { readFileSync } from "fs";
@@ -424,10 +425,11 @@ async function codeCommand(opts = {}) {
     forceResume: opts.forceResume,
     forceNew: opts.forceNew,
     noDashboard: opts.noDashboard,
-    altScreen: opts.altScreen
+    altScreen: opts.altScreen,
+    mouse: opts.mouse
   });
 }
 export {
   codeCommand
 };
-//# sourceMappingURL=code-XBEFHXVM.js.map
+//# sourceMappingURL=code-KJB3WDU6.js.map

package/dist/cli/code-KJB3WDU6.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../../src/cli/commands/code.tsx","../../src/tools/scaffold.ts"],"sourcesContent":["/**\n * `reasonix code [dir]` — opinionated wrapper around `reasonix chat` for\n * code-editing workflows.\n *\n * What it does differently from plain chat:\n *   - Registers native filesystem tools rooted at the given directory\n *     (CWD by default). No subprocess, no `npx install` step, R1-\n *     friendly schemas. Replaced the old `@modelcontextprotocol/server-filesystem`\n *     subprocess in 0.4.9 because its `edit_file` argv shape was the\n *     biggest driver of R1 DSML hallucinations.\n *   - Uses a coding-focused system prompt (src/code/prompt.ts) that\n *     teaches the model to propose edits as SEARCH/REPLACE blocks.\n *   - Defaults to the `smart` preset (reasoner + harvest) because\n *     coding tasks pay back R1 thinking.\n *   - Scopes its session to the directory so projects don't share\n *     conversation history.\n *   - Hooks `codeMode` into the TUI so assistant replies get parsed\n *     for SEARCH/REPLACE blocks and applied on disk after each turn.\n */\n\nimport { readFileSync } from \"node:fs\";\nimport { basename, resolve } from \"node:path\";\nimport { loadEditMode, loadProjectShellAllowed, readConfig } from \"../../config.js\";\nimport { bootstrapSemanticSearchInCodeMode } from \"../../index/semantic/tool.js\";\nimport { sanitizeName } from \"../../memory/session.js\";\nimport { ToolRegistry } from \"../../tools.js\";\nimport { registerChoiceTool } from \"../../tools/choice.js\";\nimport { registerFilesystemTools } from \"../../tools/filesystem.js\";\nimport { JobRegistry } from \"../../tools/jobs.js\";\nimport { registerMemoryTools } from \"../../tools/memory.js\";\nimport { registerPlanTool } from \"../../tools/plan.js\";\nimport { registerScaffoldTools } from \"../../tools/scaffold.js\";\nimport { registerShellTools } from \"../../tools/shell.js\";\nimport { registerTodoTool } from \"../../tools/todo.js\";\nimport { markPhase } from \"../startup-profile.js\";\nimport { chatCommand } from \"./chat.js\";\n\nexport interface CodeOptions {\n  /** Directory to root the filesystem tools at. Defaults to process.cwd(). */\n  dir?: string;\n  /** Override the default `smart` model. */\n  model?: string;\n  /** Disable session persistence. */\n  noSession?: boolean;\n  /** Transcript file for replay/diff. */\n  transcript?: string;\n  /** Skip the session picker — always resume prior messages. */\n  forceResume?: boolean;\n  /** Skip the session picker — always wipe prior messages and start fresh. */\n  forceNew?: boolean;\n  /**\n   * Soft USD spend cap. Off by default. Same semantics as `chat`:\n   * warns at 80%, refuses next turn at 100%. Mid-session adjustable\n   * via `/budget <usd>` slash command.\n   */\n  budgetUsd?: number;\n  /** Suppress the auto-launched embedded web dashboard. */\n  noDashboard?: boolean;\n  /** Inline string appended to the code system prompt after the generated base prompt. */\n  systemAppend?: string;\n  /** Path to a UTF-8 text file whose contents are appended to the code system prompt. */\n  systemAppendFile?: string;\n  /** Default true. Pass false (CLI: `--no-alt-screen`) to keep chat output in shell scrollback. */\n  altScreen?: boolean;\n  /** Default true. Pass false (CLI: `--no-mouse`) to keep terminal-native drag-select unmodified. */\n  mouse?: boolean;\n}\n\nexport async function codeCommand(opts: CodeOptions = {}): Promise<void> {\n  markPhase(\"code_command_enter\");\n  const { codeSystemPrompt } = await import(\"../../code/prompt.js\");\n  const rootDir = resolve(opts.dir ?? process.cwd());\n  // Per-directory session so switching projects doesn't mix histories.\n  // `code-<sanitized-basename>` fits the session name rules without\n  // truncating most project names.\n  const session = opts.noSession ? undefined : `code-${sanitizeName(basename(rootDir))}`;\n\n  // Native filesystem tools. No subprocess, ~50-200 ms faster per call\n  // than the MCP server was, and `edit_file` takes a flat SEARCH/REPLACE\n  // shape instead of the `string=\"false\"` JSON-in-string array that\n  // triggered R1's DSML hallucinations all through 0.4.x.\n  const tools = new ToolRegistry();\n  // Background-process registry shared between the shell tools and the\n  // TUI's /jobs + /kill slashes + exit cleanup. One per `reasonix code`\n  // run — orphan prevention on SIGINT / process exit kills everything\n  // it owns, so dev servers don't outlive the Reasonix process.\n  const jobs = new JobRegistry();\n  // Bundled re-registration so `/cwd <path>` can swap every rootDir-\n  // dependent tool atomically. ToolRegistry.register is keyed by name\n  // and overwrites in-place, so re-calling these against the existing\n  // registry replaces the closures cleanly without disturbing tool\n  // specs (names/descriptions/params don't reference rootDir, so the\n  // prefix cache survives).\n  const registerRootedTools = (root: string): void => {\n    registerFilesystemTools(tools, { rootDir: root });\n    registerShellTools(tools, {\n      rootDir: root,\n      // Per-project \"always allow\" list persisted from prior ShellConfirm\n      // choices; merged on top of the built-in allowlist in shell.ts.\n      // GETTER form — re-read every dispatch so a prefix the user adds\n      // via ShellConfirm mid-session takes effect on the next shell call\n      // instead of waiting for `/new` or a relaunch.\n      extraAllowed: () => loadProjectShellAllowed(root),\n      // `yolo` edit-mode disables shell confirmations entirely. Re-read\n      // from config on each dispatch so /mode yolo (or Shift+Tab cycling\n      // through to it) flips the gate live without forcing a relaunch.\n      allowAll: () => loadEditMode() === \"yolo\",\n      jobs,\n    });\n    // `remember` / `forget` / `recall_memory` — cross-session user memory.\n    // Project scope hashes off rootDir so switching projects gets a fresh\n    // per-project memory store; the global scope is shared across runs.\n    registerMemoryTools(tools, { projectRoot: root });\n  };\n  // Async tail to `registerRootedTools`. Kept separate because the FS /\n  // shell / memory re-registration above is sync and must happen before\n  // the next tool dispatch, while semantic-index probing reads disk and\n  // can race ahead in the background. On `/cwd`, App.tsx fires this\n  // after the sync swap and surfaces the result via postInfo.\n  const reBootstrapSemantic = async (root: string): Promise<{ enabled: boolean }> => {\n    const result = await bootstrapSemanticSearchInCodeMode(tools, root);\n    if (!result.enabled) tools.unregister(\"semantic_search\");\n    return result;\n  };\n  registerRootedTools(rootDir);\n  // `submit_plan` is always in the spec list so the prefix cache stays\n  // stable across plan-mode toggles (Pillar 1). The tool itself is a\n  // no-op outside plan mode and throws `PlanProposedError` when the\n  // user has `/plan`-enabled the session.\n  registerPlanTool(tools);\n  // `ask_choice` — branching primitive. Independent of plan mode: the\n  // model uses it to put a 2–4 way choice in front of the user\n  // (strategy, style, library pick) without trying to squeeze the\n  // menu into a submit_plan body. Keeping it always-registered\n  // preserves the prefix cache across plan-mode toggles.\n  registerChoiceTool(tools);\n  // `todo_write` — lightweight in-session task tracker, no approval gate.\n  // Independent of plan mode (readOnly=true so it stays callable in /plan).\n  registerTodoTool(tools);\n  // `create_skill` / `add_mcp_server` — let the model scaffold from chat.\n  // Both writes go through the same paths the wizard / `/skill new` use,\n  // so the on-disk shape stays one source of truth. New servers take\n  // effect on next launch (no live client churn).\n  registerScaffoldTools(tools, { projectRoot: rootDir });\n  // `run_skill` is intentionally NOT registered here — App.tsx wires it\n  // up with the subagent runner attached, so `runAs: subagent` skills\n  // can spawn isolated child loops. Doing it here would mean the App's\n  // re-registration would shadow the no-runner version, which works\n  // (last write wins) but obscures the wiring.\n\n  // Bootstrap semantic_search. Silent: registers the tool when an\n  // on-disk index already exists, skips entirely otherwise. Setup\n  // happens via the explicit `reasonix index` command — never\n  // by surprise on launch.\n  markPhase(\"semantic_bootstrap_start\");\n  const semantic = await reBootstrapSemantic(rootDir);\n  markPhase(\n    semantic.enabled ? \"semantic_bootstrap_done_enabled\" : \"semantic_bootstrap_done_skipped\",\n  );\n\n  process.stderr.write(\n    `▸ reasonix code: rooted at ${rootDir}, session \"${session ?? \"(ephemeral)\"}\" · ${tools.size} native tool(s)${\n      semantic.enabled ? \" · semantic_search on\" : \"\"\n    }\\n`,\n  );\n\n  // Belt-and-suspenders cleanup: even though spawn(detached:false)\n  // should tie child processes to the parent's lifetime, Windows cmd.exe\n  // wrappers occasionally leak. We DON'T install SIGINT/SIGTERM\n  // handlers here — that overrode Node's default \"exit on Ctrl+C\" with\n  // a silent no-op, which made Ctrl+C feel broken in the TUI. App.tsx\n  // owns the SIGINT path now (it shows the quit-armed banner and calls\n  // exit() on confirmation); this 'exit' hook just guarantees the job\n  // registry is drained on the way out, regardless of which exit path\n  // fired.\n  process.once(\"exit\", () => {\n    void jobs.shutdown();\n  });\n\n  let systemAppendFileContents: string | undefined;\n  if (opts.systemAppend !== undefined && opts.systemAppend.trim().length === 0) {\n    process.stderr.write(\"--system-append is empty — no prompt text will be appended\\n\");\n  }\n  if (opts.systemAppendFile) {\n    const filePath = resolve(opts.systemAppendFile);\n    try {\n      systemAppendFileContents = readFileSync(filePath, \"utf8\");\n    } catch (err) {\n      const e = err as NodeJS.ErrnoException;\n      process.stderr.write(\n        `Error: cannot read --system-append-file \"${filePath}\": ${e.code ? `[${e.code}] ` : \"\"}${e.message}\\n`,\n      );\n      process.exit(1);\n    }\n  }\n\n  await chatCommand({\n    model: opts.model ?? \"deepseek-v4-flash\",\n    budgetUsd: opts.budgetUsd,\n    system: codeSystemPrompt(rootDir, {\n      hasSemanticSearch: semantic.enabled,\n      systemAppend: opts.systemAppend,\n      systemAppendFile: systemAppendFileContents,\n    }),\n    transcript: opts.transcript,\n    session,\n    seedTools: tools,\n    codeMode: {\n      rootDir,\n      jobs,\n      reregisterTools: registerRootedTools,\n      reBootstrapSemantic,\n    },\n    mcp: readConfig().mcp,\n    forceResume: opts.forceResume,\n    forceNew: opts.forceNew,\n    noDashboard: opts.noDashboard,\n    altScreen: opts.altScreen,\n    mouse: opts.mouse,\n  });\n}\n","/** Agent-facing tools for scaffolding skills + MCP servers from chat. Persists via the same paths the wizard / `/skill new` use. */\n\nimport { defaultConfigPath, readConfig, writeConfig } from \"../config.js\";\nimport { MCP_CATALOG } from \"../mcp/catalog.js\";\nimport { preflightStdioSpec } from \"../mcp/preflight.js\";\nimport { type McpSpec, parseMcpSpec } from \"../mcp/spec.js\";\nimport { SkillStore } from \"../skills.js\";\nimport type { ToolRegistry } from \"../tools.js\";\n\nexport interface ScaffoldToolsOptions {\n  homeDir?: string;\n  projectRoot?: string;\n  /** Override config path — tests point this at a tmp file. */\n  configPath?: string;\n}\n\nconst VALID_SKILL_NAME = /^[a-zA-Z0-9][a-zA-Z0-9._-]{0,63}$/;\nconst VALID_SERVER_NAME = /^[a-zA-Z_][a-zA-Z0-9_-]{0,63}$/;\nconst VALID_TOOL_NAME = /^[a-zA-Z_][a-zA-Z0-9_-]*$/;\n\nexport function registerScaffoldTools(\n  registry: ToolRegistry,\n  opts: ScaffoldToolsOptions = {},\n): ToolRegistry {\n  const configPath = opts.configPath ?? defaultConfigPath();\n\n  registry.register({\n    name: \"create_skill\",\n    description:\n      'Scaffold a new skill (`SKILL.md` in `.reasonix/skills/<name>.md`) the user can invoke later via `/skill <name>`. Use this when the user asks the agent to add a playbook, automate a recurring workflow, or capture a multi-step recipe as a named skill. The frontmatter is filled from the structured args here (description / allowed_tools / run_as / model) so the model never has to write raw YAML. Use `run_as: \"subagent\"` for read-and-synthesize playbooks where only the final answer should come back; default `\"inline\"` appends the body to the parent log so the user sees the steps. Refuses to overwrite an existing skill — pick a different name or ask the user to delete the old one.',\n    parameters: {\n      type: \"object\",\n      properties: {\n        name: {\n          type: \"string\",\n          description:\n            \"Skill identifier — letters/digits/`_`/`-`/`.`, 1–64 chars. Becomes the `name` frontmatter and the `<name>.md` filename.\",\n        },\n        description: {\n          type: \"string\",\n          description:\n            'One-line summary shown in the pinned skills index. Lead with the verb (\"Run X and …\") so the parent agent can scan it.',\n        },\n        body: {\n          type: \"string\",\n          description:\n            \"Markdown body of the skill — the playbook the model follows when invoked. Plain prose + bullets; reference tools by name.\",\n        },\n        scope: {\n          type: \"string\",\n          enum: [\"project\", \"global\"],\n          description:\n            \"`project` = `.reasonix/skills/` under the workspace (default, requires `reasonix code`); `global` = `~/.reasonix/skills/` shared across all repos.\",\n        },\n        allowed_tools: {\n          type: \"array\",\n          items: { type: \"string\" },\n          description:\n            \"Optional whitelist of tool names the subagent registry is scoped to (only meaningful for `run_as: subagent`). Common values: `read_file`, `search_content`, `directory_tree`, `run_command`. Omit to give the subagent the full inherited toolset.\",\n        },\n        run_as: {\n          type: \"string\",\n          enum: [\"inline\", \"subagent\"],\n          description:\n            \"`inline` (default) appends the body to the parent log as a tool result. `subagent` spawns an isolated child loop and only the final answer comes back — use for read-and-synthesize playbooks (explore, research, review).\",\n        },\n        model: {\n          type: \"string\",\n          enum: [\"deepseek-v4-flash\", \"deepseek-v4-pro\"],\n          description:\n            \"Subagent model override (only meaningful for `run_as: subagent`). Default is the same as `spawn_subagent` — `deepseek-v4-flash`. Set to `deepseek-v4-pro` only when the playbook empirically needs the stronger model.\",\n        },\n      },\n      required: [\"name\", \"description\", \"body\"],\n    },\n    fn: async (args: {\n      name?: unknown;\n      description?: unknown;\n      body?: unknown;\n      scope?: unknown;\n      allowed_tools?: unknown;\n      run_as?: unknown;\n      model?: unknown;\n    }) => {\n      const name = typeof args.name === \"string\" ? args.name.trim() : \"\";\n      if (!VALID_SKILL_NAME.test(name)) {\n        return JSON.stringify({\n          error: `invalid skill name: ${JSON.stringify(name)} — use letters, digits, _, -, .`,\n        });\n      }\n      const description =\n        typeof args.description === \"string\" ? args.description.trim().replace(/\\n+/g, \" \") : \"\";\n      if (!description) {\n        return JSON.stringify({\n          error: \"create_skill requires a non-empty 'description'\",\n        });\n      }\n      const body = typeof args.body === \"string\" ? args.body : \"\";\n      if (!body.trim()) {\n        return JSON.stringify({ error: \"create_skill requires a non-empty 'body'\" });\n      }\n      const scope: \"project\" | \"global\" =\n        args.scope === \"global\" ? \"global\" : opts.projectRoot ? \"project\" : \"global\";\n      const runAs: \"inline\" | \"subagent\" = args.run_as === \"subagent\" ? \"subagent\" : \"inline\";\n      const allowedTools = parseAllowedTools(args.allowed_tools);\n      if (allowedTools && \"error\" in allowedTools) {\n        return JSON.stringify({ error: allowedTools.error });\n      }\n      const model =\n        typeof args.model === \"string\" && args.model.startsWith(\"deepseek-\")\n          ? args.model\n          : undefined;\n\n      const content = serializeSkill({\n        name,\n        description,\n        runAs,\n        allowedTools: allowedTools ?? undefined,\n        model,\n        body,\n      });\n\n      const store = new SkillStore({\n        homeDir: opts.homeDir,\n        projectRoot: opts.projectRoot,\n      });\n      const result = store.createWithContent(name, scope, content);\n      if (\"error\" in result) {\n        return JSON.stringify({ error: result.error });\n      }\n      return JSON.stringify({\n        success: true,\n        path: result.path,\n        scope,\n        name,\n        run_as: runAs,\n      });\n    },\n  });\n\n  registry.register({\n    name: \"add_mcp_server\",\n    description:\n      'Register a new MCP server in the user\\'s Reasonix config (`mcp` array). Takes effect on the next session — does NOT spawn the server now. Use stdio for local commands (npx packages, local binaries), `sse` or `streamable-http` for remote endpoints. Pass `from_catalog: \"<name>\"` (e.g. `\"filesystem\"`, `\"memory\"`, `\"github\"`) to auto-fill `command` + `args` from the bundled catalog — the user still has to supply user-args (filesystem: a sandbox dir; github: GITHUB_PERSONAL_ACCESS_TOKEN in env). Refuses to add a server whose name collides with an existing entry.',\n    parameters: {\n      type: \"object\",\n      properties: {\n        name: {\n          type: \"string\",\n          description:\n            \"Server name — used as the namespace prefix on every tool the server exposes. Letters/digits/`_`/`-`, must start with a letter or `_`.\",\n        },\n        transport: {\n          type: \"string\",\n          enum: [\"stdio\", \"sse\", \"streamable-http\"],\n          description:\n            \"`stdio` = spawn a local command and pipe MCP over stdin/stdout. `sse` = HTTP+SSE remote. `streamable-http` = Streamable HTTP remote. Required unless `from_catalog` is set.\",\n        },\n        command: {\n          type: \"string\",\n          description:\n            'Argv[0] for stdio servers — typically `npx` or a binary path. Required when `transport: \"stdio\"` (and no `from_catalog`).',\n        },\n        args: {\n          type: \"array\",\n          items: { type: \"string\" },\n          description:\n            'Remaining argv for stdio servers — e.g. `[\"-y\", \"@modelcontextprotocol/server-filesystem\", \"/path/to/dir\"]`. The dir at the tail is enforced to exist by the preflight check.',\n        },\n        url: {\n          type: \"string\",\n          description:\n            \"Endpoint URL for `sse` / `streamable-http` transports. Must be `http://` or `https://`.\",\n        },\n        from_catalog: {\n          type: \"string\",\n          description:\n            \"Optional shortcut — name out of the bundled catalog (`filesystem`, `memory`, `github`, `puppeteer`, `everything`). When set, fills `command` + `args` from the catalog entry; you still supply `name` (defaults to the catalog name) and any user-args via `args`.\",\n        },\n      },\n      required: [\"name\"],\n    },\n    fn: async (args: {\n      name?: unknown;\n      transport?: unknown;\n      command?: unknown;\n      args?: unknown;\n      url?: unknown;\n      from_catalog?: unknown;\n    }) => {\n      const name = typeof args.name === \"string\" ? args.name.trim() : \"\";\n      if (!VALID_SERVER_NAME.test(name)) {\n        return JSON.stringify({\n          error: `invalid server name: ${JSON.stringify(name)} — must match [a-zA-Z_][a-zA-Z0-9_-]*`,\n        });\n      }\n\n      const specStr = buildSpecString({\n        name,\n        transport: typeof args.transport === \"string\" ? args.transport : undefined,\n        command: typeof args.command === \"string\" ? args.command : undefined,\n        argv: Array.isArray(args.args)\n          ? (args.args.filter((a) => typeof a === \"string\") as string[])\n          : undefined,\n        url: typeof args.url === \"string\" ? args.url : undefined,\n        fromCatalog: typeof args.from_catalog === \"string\" ? args.from_catalog : undefined,\n      });\n      if (\"error\" in specStr) {\n        return JSON.stringify({ error: specStr.error });\n      }\n\n      let parsed: McpSpec;\n      try {\n        parsed = parseMcpSpec(specStr.spec);\n      } catch (err) {\n        return JSON.stringify({ error: (err as Error).message });\n      }\n      if (parsed.transport === \"stdio\") {\n        try {\n          preflightStdioSpec(parsed);\n        } catch (err) {\n          return JSON.stringify({ error: (err as Error).message });\n        }\n      }\n\n      const cfg = readConfig(configPath);\n      const existing = cfg.mcp ?? [];\n      const collision = existing.find((s) => parseSpecName(s) === name);\n      if (collision) {\n        return JSON.stringify({\n          error: `MCP server ${JSON.stringify(name)} already registered: ${collision}`,\n        });\n      }\n      cfg.mcp = [...existing, specStr.spec];\n      writeConfig(cfg, configPath);\n      return JSON.stringify({\n        success: true,\n        name,\n        transport: parsed.transport,\n        spec: specStr.spec,\n        config_path: configPath,\n        active_on_next_launch: true,\n      });\n    },\n  });\n\n  return registry;\n}\n\ninterface SerializeSkillArgs {\n  name: string;\n  description: string;\n  runAs: \"inline\" | \"subagent\";\n  allowedTools?: readonly string[];\n  model?: string;\n  body: string;\n}\n\nexport function serializeSkill(args: SerializeSkillArgs): string {\n  const lines: string[] = [\"---\", `name: ${args.name}`, `description: ${args.description}`];\n  if (args.runAs === \"subagent\") {\n    lines.push(\"runAs: subagent\");\n  }\n  if (args.allowedTools && args.allowedTools.length > 0) {\n    lines.push(`allowed-tools: ${args.allowedTools.join(\", \")}`);\n  }\n  if (args.model) {\n    lines.push(`model: ${args.model}`);\n  }\n  lines.push(\"---\", \"\");\n  return `${lines.join(\"\\n\")}\\n${args.body.trim()}\\n`;\n}\n\nfunction parseAllowedTools(raw: unknown): readonly string[] | { error: string } | undefined {\n  if (raw === undefined || raw === null) return undefined;\n  if (!Array.isArray(raw)) {\n    return { error: \"'allowed_tools' must be an array of tool-name strings\" };\n  }\n  const out: string[] = [];\n  for (const v of raw) {\n    if (typeof v !== \"string\") {\n      return { error: \"'allowed_tools' entries must be strings\" };\n    }\n    const trimmed = v.trim();\n    if (!trimmed) continue;\n    if (!VALID_TOOL_NAME.test(trimmed)) {\n      return { error: `invalid tool name in allowed_tools: ${JSON.stringify(trimmed)}` };\n    }\n    out.push(trimmed);\n  }\n  return out.length > 0 ? out : undefined;\n}\n\ninterface BuildSpecInput {\n  name: string;\n  transport?: string;\n  command?: string;\n  argv?: string[];\n  url?: string;\n  fromCatalog?: string;\n}\n\nfunction buildSpecString(input: BuildSpecInput): { spec: string } | { error: string } {\n  if (input.fromCatalog) {\n    const entry = MCP_CATALOG.find((e) => e.name === input.fromCatalog);\n    if (!entry) {\n      const known = MCP_CATALOG.map((e) => e.name).join(\", \");\n      return {\n        error: `unknown catalog entry: ${JSON.stringify(input.fromCatalog)} — known: ${known}`,\n      };\n    }\n    const userArgs = input.argv ?? [];\n    if (entry.userArgs && userArgs.length === 0) {\n      return {\n        error: `catalog entry \"${entry.name}\" needs ${entry.userArgs} — pass it via the 'args' parameter`,\n      };\n    }\n    const tail = userArgs.map(quoteIfNeeded).join(\" \");\n    const body = `npx -y ${entry.package}${tail ? ` ${tail}` : \"\"}`;\n    return { spec: `${input.name}=${body}` };\n  }\n\n  const transport = input.transport;\n  if (!transport) {\n    return { error: \"add_mcp_server requires 'transport' (or 'from_catalog')\" };\n  }\n  if (transport === \"stdio\") {\n    if (!input.command || !input.command.trim()) {\n      return { error: \"stdio transport requires 'command'\" };\n    }\n    const tail = (input.argv ?? []).map(quoteIfNeeded).join(\" \");\n    const body = `${quoteIfNeeded(input.command.trim())}${tail ? ` ${tail}` : \"\"}`;\n    return { spec: `${input.name}=${body}` };\n  }\n  if (transport === \"sse\" || transport === \"streamable-http\") {\n    if (!input.url || !/^https?:\\/\\//i.test(input.url)) {\n      return { error: `${transport} transport requires an http(s):// 'url'` };\n    }\n    const prefix = transport === \"streamable-http\" ? \"streamable+\" : \"\";\n    return { spec: `${input.name}=${prefix}${input.url.trim()}` };\n  }\n  return { error: `unknown transport: ${JSON.stringify(transport)}` };\n}\n\nfunction parseSpecName(spec: string): string | null {\n  const m = spec.trim().match(/^([a-zA-Z_][a-zA-Z0-9_-]*)=/);\n  return m ? (m[1] ?? null) : null;\n}\n\nfunction quoteIfNeeded(s: string): string {\n  return /\\s|\"/.test(s) ? `\"${s.replace(/\\\\/g, \"\\\\\\\\\").replace(/\"/g, '\\\\\"')}\"` : 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package/dist/cli/{commands-MEZPSEHV.js → commands-FE2UDFBC.js}

@@ -4,12 +4,12 @@ import {
   checkOllamaStatus,
   pullOllamaModel,
   startOllamaDaemon
-} from "./chunk-RXGEGA7K.js";
+} from "./chunk-XQIFIB3U.js";
 import "./chunk-5X7LZJDE.js";
 import {
   loadIndexConfig,
   resolveSemanticEmbeddingConfig
-} from "./chunk-5JXXEPDM.js";
+} from "./chunk-BHLHOS5Y.js";
 import "./chunk-WUI3P4RA.js";
 
 // src/cli/commands/index.ts
@@ -350,4 +350,4 @@ function makeTtyWriter() {
 export {
   indexCommand
 };
-//# sourceMappingURL=commands-MEZPSEHV.js.map
+//# sourceMappingURL=commands-FE2UDFBC.js.map

package/dist/cli/{commit-CE4EFTUQ.js → commit-3IAGB22T.js}

@@ -6,8 +6,9 @@ import {
   loadDotenv
 } from "./chunk-3Q3C4W66.js";
 import {
-  loadApiKey
-} from "./chunk-5JXXEPDM.js";
+  loadApiKey,
+  loadBaseUrl
+} from "./chunk-BHLHOS5Y.js";
 import "./chunk-WUI3P4RA.js";
 
 // src/cli/commands/commit.ts
@@ -230,7 +231,7 @@ async function commitCommand(opts = {}) {
       "reasonix commit: diff exceeded 80KB; head + tail sent to the model. Large diffs often produce vague drafts \u2014 consider committing in smaller chunks.\n"
     );
   }
-  const client = new DeepSeekClient({ apiKey });
+  const client = new DeepSeekClient({ apiKey, baseUrl: loadBaseUrl() });
   const model = opts.model ?? DEFAULT_MODEL;
   const recentCommits = readRecentCommits();
   let message = "";
@@ -286,4 +287,4 @@ async function commitCommand(opts = {}) {
 export {
   commitCommand
 };
-//# sourceMappingURL=commit-CE4EFTUQ.js.map
+//# sourceMappingURL=commit-3IAGB22T.js.map