react-science 7.0.0 → 8.0.1

package/lib-esm/app/panels/measurements/MeasurementsTable.js

@@ -1,159 +0,0 @@
-import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
-import { Menu, MenuItem, Popover } from '@blueprintjs/core';
-import styled from '@emotion/styled';
-import { useMemo } from 'react';
-import { getMeasurement, useAppDispatch, useAppState, } from '../../../app-data';
-import { Button, ConfirmDialog, InfoPanel, PanelPreferencesToolbar, useOnOff, } from '../../../components';
-import { MeasurementConfigPanel } from '../index';
-import { MeasurementCheckbox, MeasurementColorPreview, MeasurementSelectedVisibilityChange, MeasurementVisibilityToggle, useMeasurementPanel, } from '.';
-const MeasurementsTableContainer = styled.div `
-  display: flex;
-  flex-direction: column;
-`;
-const MeasurementsTableRoot = styled.table `
-  font-size: 0.875rem;
-  line-height: 1.25rem;
-  border-collapse: collapse;
-  table-layout: fixed;
-`;
-const MeasurementsTableHeaderStyled = styled.tr `
-  border-bottom-width: 1px;
-  font-weight: 500;
-  text-align: left;
-  padding-bottom: 10px;
-  padding-top: 10px;
-  padding-left: 2rem;
-`;
-const MeasurementsTableBody = styled.tbody `
-  background-color: white;
-`;
-const MeasurementsHeaderColumn = styled.div `
-  display: flex;
-  flex-direction: row;
-  gap: 12px;
-  align-items: center;
-  padding-left: 5px;
-  padding-right: 5px;
-  border-bottom: 1px solid black;
-`;
-const MeasurementsHeaderGroup = styled.div `
-  display: flex;
-  gap: 6px;
-`;
-const MeasurementsTableRowData = styled.tr `
-  height: 50px;
-  max-height: 50px;
-  overflow: hidden;
-  cursor: pointer;
-  padding-left: 2rem;
-  padding-bottom: 10px;
-  padding-top: 10px;
-  border-bottom-width: 1px;
-
-  font-weight: 500;
-  font-size: 0.875rem;
-  line-height: 1.25rem;
-`;
-const MeasurementsIconsContainer = styled.th `
-  display: flex;
-  justify-content: flex-start;
-  align-items: center;
-  justify-items: center;
-  height: 50px;
-  flex-direction: row;
-  cursor: default;
-  gap: 2px;
-  width: 100px;
-`;
-export function MeasurementsTable(props) {
-    const { kind } = props;
-    const { data: { measurements }, view: { selectedMeasurements }, } = useAppState();
-    const dispatch = useAppDispatch();
-    const [isRemoveDialogOpen, openRemoveDialog, closeRemoveDialog] = useOnOff();
-    const hasSelectedMeasurements = (selectedMeasurements[kind]?.length ?? 0) > 0;
-    function onRemove() {
-        dispatch({ type: 'REMOVE_SELECTED_MEASUREMENTS', payload: { kind } });
-        closeRemoveDialog();
-    }
-    return (_jsxs(MeasurementsTableContainer, { children: [_jsxs(MeasurementsHeaderColumn, { children: [_jsx(MeasurementsHeaderGroup, { children: _jsx(Button, { minimal: true, icon: "trash", intent: "danger", style: { opacity: hasSelectedMeasurements ? 1 : 0.6 }, onClick: hasSelectedMeasurements ? openRemoveDialog : undefined, tooltipProps: { content: 'Remove selected', position: 'bottom' } }) }), _jsx(ConfirmDialog, { headerColor: "red", isOpen: isRemoveDialogOpen, onConfirm: onRemove, onClose: closeRemoveDialog, saveText: "Remove", children: _jsx("div", { style: { fontWeight: 'bold', padding: 10 }, children: "Remove selected measurements?" }) })] }), _jsxs(MeasurementsTableRoot, { children: [_jsx(MeasurementsTableHeader, { kind: kind }), _jsx(MeasurementsTableBody, { children: measurements[kind].entries.map((element) => (_jsx(MeasurementsTableRow, { item: element, kind: kind }, element.id))) })] })] }));
-}
-const TableHeaderFilename = styled.th `
-  width: 50%;
-`;
-const TableHeaderTechnique = styled.th `
-  width: 150px;
-`;
-const TableDataHeaderName = styled.td `
-  width: 50%;
-  overflow: hidden;
-`;
-function MeasurementsTableHeader({ kind, }) {
-    const { data: { measurements: measurementsData }, view: { selectedMeasurements, measurements }, } = useAppState();
-    const dispatch = useAppDispatch();
-    function onSelectLink(select) {
-        dispatch({
-            type: 'SELECT_ALL_MEASUREMENTS',
-            payload: {
-                kind,
-                select,
-            },
-        });
-    }
-    const allSelected = useMemo(() => selectedMeasurements[kind]?.length ===
-        measurementsData[kind]?.entries.length, [kind, measurementsData, selectedMeasurements]);
-    const selectedVisible = useMemo(() => {
-        const ids = selectedMeasurements[kind];
-        if (ids) {
-            return ids.every((id) => measurements[id]?.visible);
-        }
-        return false;
-    }, [selectedMeasurements, kind, measurements]);
-    return (_jsx("thead", { children: _jsxs(MeasurementsTableHeaderStyled, { children: [_jsxs(MeasurementsIconsContainer, { style: {
-                        paddingLeft: '26px',
-                    }, children: [_jsx(MeasurementCheckbox, { checked: allSelected, onSelectCheckbox: () => {
-                                onSelectLink(!allSelected);
-                            } }), _jsx(MeasurementSelectedVisibilityChange, { kind: kind, isVisible: selectedVisible })] }), _jsx(TableHeaderFilename, { children: "Filename" }), _jsx(TableHeaderTechnique, { children: "Technique" })] }) }));
-}
-function MeasurementsTableRow(props) {
-    const { item, kind } = props;
-    const { openPanel } = useMeasurementPanel();
-    const { data, view: { selectedMeasurements, measurements }, } = useAppState();
-    const dispatch = useAppDispatch();
-    function onSelectRow() {
-        dispatch({
-            type: 'SELECT_MEASUREMENT',
-            payload: { id: item.id, kind, acc: 'replace' },
-        });
-    }
-    function onSelectCheckbox() {
-        const isAlreadyChecked = selectedMeasurements[kind]?.includes(item.id);
-        dispatch({
-            type: 'SELECT_MEASUREMENT',
-            payload: { id: item.id, kind, acc: isAlreadyChecked ? 'remove' : 'add' },
-        });
-    }
-    const { info = {}, meta = {} } = getMeasurement(data.measurements, kind, item.id) || {};
-    const infoPanelData = [
-        {
-            description: 'Information',
-            data: info,
-        },
-        {
-            description: 'Metadata',
-            data: meta,
-        },
-    ];
-    const content = (_jsxs(Menu, { style: {
-            minWidth: 0,
-        }, children: [_jsx(MenuItem, { text: "Information", icon: "info-sign", onClick: () => openPanel?.({
-                    title: item.info.file?.name ?? item.info.title,
-                    renderPanel: (props) => (_jsxs("div", { children: [_jsx(PanelPreferencesToolbar, { title: item.info.file?.name ?? item.info.title, onClose: () => props.closePanel() }), _jsx(InfoPanel, { data: infoPanelData, title: "" })] })),
-                }) }), _jsx(MenuItem, { text: "Configuration", icon: "settings", onClick: () => openPanel?.({
-                    title: item.info.file?.name ?? item.info.title,
-                    renderPanel: (props) => (_jsxs("div", { children: [_jsx(PanelPreferencesToolbar, { title: item.info.file?.name ?? item.info.title, onClose: () => props.closePanel() }), _jsx(MeasurementConfigPanel, {})] })),
-                }) })] }));
-    return (_jsxs(MeasurementsTableRowData, { children: [_jsxs(MeasurementsIconsContainer, { children: [_jsx(Popover, { content: content, position: "bottom-left", children: _jsx(Button, { minimal: true, icon: "more", style: {
-                                transform: 'rotate(90deg)',
-                            }, small: true }) }), _jsx(MeasurementCheckbox, { checked: selectedMeasurements[kind]?.includes(item.id) || false, onSelectCheckbox: onSelectCheckbox }), _jsx(MeasurementVisibilityToggle, { id: item.id, isVisible: measurements[item.id].visible }), _jsx(MeasurementColorPreview, { measurementId: item.id, kind: kind, color: measurements[item.id].color })] }), _jsx(TableDataHeaderName, { onClick: onSelectRow, title: item.id, children: item.info.file?.name ?? item.info.title }), _jsx("td", { onClick: onSelectRow, children: item.meta.technique })] }));
-}
-//# sourceMappingURL=MeasurementsTable.js.map

package/lib-esm/app/panels/measurements/MeasurementsTable.js.map

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package/lib-esm/app/panels/measurements/index.d.ts

@@ -1,8 +0,0 @@
-export * from './MeasurementsPanelAccordion';
-export * from './MeasurementsPanel';
-export * from './MeasurementsTable';
-export * from './measurementPanelContext';
-export * from './MeasurementVisibilityToggle';
-export * from './MeasurementCheckbox';
-export * from './MeasurementColorPreview';
-//# sourceMappingURL=index.d.ts.map

package/lib-esm/app/panels/measurements/index.d.ts.map

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package/lib-esm/app/panels/measurements/index.js

@@ -1,8 +0,0 @@
-export * from './MeasurementsPanelAccordion';
-export * from './MeasurementsPanel';
-export * from './MeasurementsTable';
-export * from './measurementPanelContext';
-export * from './MeasurementVisibilityToggle';
-export * from './MeasurementCheckbox';
-export * from './MeasurementColorPreview';
-//# sourceMappingURL=index.js.map

package/lib-esm/app/panels/measurements/index.js.map

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package/lib-esm/app/panels/measurements/measurementPanelContext.d.ts

@@ -1,11 +0,0 @@
-import { Panel } from '@blueprintjs/core';
-import { type ReactNode } from 'react';
-export interface MeasurementState {
-    openPanel?: (panel: Panel<object>) => void;
-}
-export declare function useMeasurementPanel(): MeasurementState;
-export declare function MeasurementPanelProvider({ children, value, }: {
-    children: ReactNode;
-    value: MeasurementState;
-}): import("react/jsx-runtime").JSX.Element;
-//# sourceMappingURL=measurementPanelContext.d.ts.map

package/lib-esm/app/panels/measurements/measurementPanelContext.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"measurementPanelContext.d.ts","sourceRoot":"","sources":["../../../../src/app/panels/measurements/measurementPanelContext.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,mBAAmB,CAAC;AAC1C,OAAO,EAAiB,KAAK,SAAS,EAAc,MAAM,OAAO,CAAC;AAElE,MAAM,WAAW,gBAAgB;IAC/B,SAAS,CAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,MAAM,CAAC,KAAK,IAAI,CAAC;CAC5C;AAID,wBAAgB,mBAAmB,qBAQlC;AAED,wBAAgB,wBAAwB,CAAC,EACvC,QAAQ,EACR,KAAK,GACN,EAAE;IACD,QAAQ,EAAE,SAAS,CAAC;IACpB,KAAK,EAAE,gBAAgB,CAAC;CACzB,2CAMA"}

package/lib-esm/app/panels/measurements/measurementPanelContext.js

@@ -1,14 +0,0 @@
-import { jsx as _jsx } from "react/jsx-runtime";
-import { createContext, useContext } from 'react';
-const measurementPanelContext = createContext({});
-export function useMeasurementPanel() {
-    const context = useContext(measurementPanelContext);
-    if (!context) {
-        throw new Error('useMeasurementPanel must be used within a MeasurementPanel');
-    }
-    return context;
-}
-export function MeasurementPanelProvider({ children, value, }) {
-    return (_jsx(measurementPanelContext.Provider, { value: value, children: children }));
-}
-//# sourceMappingURL=measurementPanelContext.js.map

package/lib-esm/app/panels/measurements/measurementPanelContext.js.map

@@ -1 +0,0 @@
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package/lib-esm/app-data/enhancers/enhance.d.ts

@@ -1,8 +0,0 @@
-import type { Measurements } from '../index';
-import { MeasurementBase } from '../state/index';
-export type Enhancer<T extends MeasurementBase> = (data: T) => void;
-export type Enhancers = {
-    [mKind in keyof Measurements]: Array<Enhancer<Measurements[mKind]['entries'][number]>>;
-};
-export declare function enhance(measurements: Partial<Measurements>, enhancers: Partial<Enhancers>): void;
-//# sourceMappingURL=enhance.d.ts.map

package/lib-esm/app-data/enhancers/enhance.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"enhance.d.ts","sourceRoot":"","sources":["../../../src/app-data/enhancers/enhance.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,UAAU,CAAC;AAC7C,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAEjD,MAAM,MAAM,QAAQ,CAAC,CAAC,SAAS,eAAe,IAAI,CAAC,IAAI,EAAE,CAAC,KAAK,IAAI,CAAC;AAEpE,MAAM,MAAM,SAAS,GAAG;KACrB,KAAK,IAAI,MAAM,YAAY,GAAG,KAAK,CAClC,QAAQ,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,CAAC,CACjD;CACF,CAAC;AAEF,wBAAgB,OAAO,CACrB,YAAY,EAAE,OAAO,CAAC,YAAY,CAAC,EACnC,SAAS,EAAE,OAAO,CAAC,SAAS,CAAC,QAY9B"}

package/lib-esm/app-data/enhancers/enhance.js

@@ -1,13 +0,0 @@
-export function enhance(measurements, enhancers) {
-    for (const [kind, kindEnhancers] of Object.entries(enhancers)) {
-        const kindMeasurements = measurements[kind];
-        if (kindMeasurements) {
-            for (const measurement of kindMeasurements.entries) {
-                for (const enhancer of kindEnhancers) {
-                    enhancer(measurement);
-                }
-            }
-        }
-    }
-}
-//# sourceMappingURL=enhance.js.map

package/lib-esm/app-data/enhancers/enhance.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"enhance.js","sourceRoot":"","sources":["../../../src/app-data/enhancers/enhance.ts"],"names":[],"mappings":"AAWA,MAAM,UAAU,OAAO,CACrB,YAAmC,EACnC,SAA6B;IAE7B,KAAK,MAAM,CAAC,IAAI,EAAE,aAAa,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE,CAAC;QAC9D,MAAM,gBAAgB,GAAG,YAAY,CAAC,IAA0B,CAAC,CAAC;QAClE,IAAI,gBAAgB,EAAE,CAAC;YACrB,KAAK,MAAM,WAAW,IAAI,gBAAgB,CAAC,OAAO,EAAE,CAAC;gBACnD,KAAK,MAAM,QAAQ,IAAI,aAAa,EAAE,CAAC;oBACrC,QAAQ,CAAC,WAAW,CAAC,CAAC;gBACxB,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}

package/lib-esm/app-data/enhancers/index.d.ts

@@ -1,2 +0,0 @@
-export * from './enhance';
-//# sourceMappingURL=index.d.ts.map

package/lib-esm/app-data/enhancers/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/app-data/enhancers/index.ts"],"names":[],"mappings":"AAAA,cAAc,WAAW,CAAC"}

package/lib-esm/app-data/enhancers/index.js

@@ -1,2 +0,0 @@
-export * from './enhance';
-//# sourceMappingURL=index.js.map

package/lib-esm/app-data/enhancers/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/app-data/enhancers/index.ts"],"names":[],"mappings":"AAAA,cAAc,WAAW,CAAC"}

package/lib-esm/app-data/helpers/index.d.ts

@@ -1,2 +0,0 @@
-export * from './variables';
-//# sourceMappingURL=index.d.ts.map

package/lib-esm/app-data/helpers/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/app-data/helpers/index.ts"],"names":[],"mappings":"AAAA,cAAc,aAAa,CAAC"}

package/lib-esm/app-data/helpers/index.js

@@ -1,2 +0,0 @@
-export * from './variables';
-//# sourceMappingURL=index.js.map

package/lib-esm/app-data/helpers/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/app-data/helpers/index.ts"],"names":[],"mappings":"AAAA,cAAc,aAAa,CAAC"}

package/lib-esm/app-data/helpers/variables.d.ts

@@ -1,6 +0,0 @@
-import { MeasurementVariable } from 'cheminfo-types';
-import { MeasurementBase } from '../state/index';
-export declare function getAllVariableSymbols(measurement: MeasurementBase): string[];
-export declare function getPreferredVariable(measurement: MeasurementBase, axis: 'x' | 'y'): MeasurementVariable;
-export declare function getVariableByLabel(measurement: MeasurementBase, label: string): MeasurementVariable | null;
-//# sourceMappingURL=variables.d.ts.map

package/lib-esm/app-data/helpers/variables.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"variables.d.ts","sourceRoot":"","sources":["../../../src/app-data/helpers/variables.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,gBAAgB,CAAC;AAErD,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAEjD,wBAAgB,qBAAqB,CAAC,WAAW,EAAE,eAAe,GAAG,MAAM,EAAE,CAE5E;AAED,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,eAAe,EAC5B,IAAI,EAAE,GAAG,GAAG,GAAG,GACd,mBAAmB,CAMrB;AAED,wBAAgB,kBAAkB,CAChC,WAAW,EAAE,eAAe,EAC5B,KAAK,EAAE,MAAM,GACZ,mBAAmB,GAAG,IAAI,CAM5B"}

package/lib-esm/app-data/helpers/variables.js

@@ -1,20 +0,0 @@
-export function getAllVariableSymbols(measurement) {
-    return Object.values(measurement.data[0].variables).map((v) => v.label);
-}
-export function getPreferredVariable(measurement, axis) {
-    if (axis === 'x') {
-        return measurement.data[0].variables.x || measurement.data[0].variables.a;
-    }
-    else {
-        return measurement.data[0].variables.y || measurement.data[0].variables.b;
-    }
-}
-export function getVariableByLabel(measurement, label) {
-    const variables = measurement.data[0].variables;
-    for (const value of Object.values(variables)) {
-        if (value.label === label)
-            return value;
-    }
-    return null;
-}
-//# sourceMappingURL=variables.js.map

package/lib-esm/app-data/helpers/variables.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"variables.js","sourceRoot":"","sources":["../../../src/app-data/helpers/variables.ts"],"names":[],"mappings":"AAIA,MAAM,UAAU,qBAAqB,CAAC,WAA4B;IAChE,OAAO,MAAM,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;AAC1E,CAAC;AAED,MAAM,UAAU,oBAAoB,CAClC,WAA4B,EAC5B,IAAe;IAEf,IAAI,IAAI,KAAK,GAAG,EAAE,CAAC;QACjB,OAAO,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,IAAI,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC;IAC5E,CAAC;SAAM,CAAC;QACN,OAAO,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,IAAI,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC;IAC5E,CAAC;AACH,CAAC;AAED,MAAM,UAAU,kBAAkB,CAChC,WAA4B,EAC5B,KAAa;IAEb,MAAM,SAAS,GAAG,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IAChD,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,MAAM,CAAC,SAAS,CAAC,EAAE,CAAC;QAC7C,IAAI,KAAK,CAAC,KAAK,KAAK,KAAK;YAAE,OAAO,KAAK,CAAC;IAC1C,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC"}

package/lib-esm/app-data/index.d.ts

@@ -1,7 +0,0 @@
-export * from './enhancers/index';
-export * from './helpers/index';
-export * from './kinds/index';
-export * from './loaders/index';
-export * from './state/index';
-export * from './utils';
-//# sourceMappingURL=index.d.ts.map

package/lib-esm/app-data/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/app-data/index.ts"],"names":[],"mappings":"AAAA,cAAc,mBAAmB,CAAC;AAClC,cAAc,iBAAiB,CAAC;AAChC,cAAc,eAAe,CAAC;AAC9B,cAAc,iBAAiB,CAAC;AAChC,cAAc,eAAe,CAAC;AAC9B,cAAc,SAAS,CAAC"}

package/lib-esm/app-data/index.js

@@ -1,7 +0,0 @@
-export * from './enhancers/index';
-export * from './helpers/index';
-export * from './kinds/index';
-export * from './loaders/index';
-export * from './state/index';
-export * from './utils';
-//# sourceMappingURL=index.js.map

package/lib-esm/app-data/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/app-data/index.ts"],"names":[],"mappings":"AAAA,cAAc,mBAAmB,CAAC;AAClC,cAAc,iBAAiB,CAAC;AAChC,cAAc,eAAe,CAAC;AAC9B,cAAc,iBAAiB,CAAC;AAChC,cAAc,eAAe,CAAC;AAC9B,cAAc,SAAS,CAAC"}

package/lib-esm/app-data/kinds/index.d.ts

@@ -1,3 +0,0 @@
-export * from './ir/index';
-export * from './iv/index';
-//# sourceMappingURL=index.d.ts.map

package/lib-esm/app-data/kinds/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/app-data/kinds/index.ts"],"names":[],"mappings":"AAAA,cAAc,YAAY,CAAC;AAC3B,cAAc,YAAY,CAAC"}

package/lib-esm/app-data/kinds/index.js

@@ -1,3 +0,0 @@
-export * from './ir/index';
-export * from './iv/index';
-//# sourceMappingURL=index.js.map

package/lib-esm/app-data/kinds/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/app-data/kinds/index.ts"],"names":[],"mappings":"AAAA,cAAc,YAAY,CAAC;AAC3B,cAAc,YAAY,CAAC"}

package/lib-esm/app-data/kinds/ir/IrMeasurement.d.ts

@@ -1,13 +0,0 @@
-import type { MeasurementBase } from '../../index';
-import type { IrPeak } from './IrPeak';
-/**
- * When we have a simple measurement like uv, ir, etc, data should only contain one element
- * Sometimes measurements are more complex like in GC / MS, GC / MS / MS, raman images, etc. In this case we will add the meta and info properties
- * to differentiate each measurement
- * If we have isotherm with gaz absorption / desorption this format should also be used.
- * The 'info'for each 'Measurement' should be normalized.
- */
-export interface IrMeasurement extends MeasurementBase {
-    peaks?: IrPeak[];
-}
-//# sourceMappingURL=IrMeasurement.d.ts.map

package/lib-esm/app-data/kinds/ir/IrMeasurement.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"IrMeasurement.d.ts","sourceRoot":"","sources":["../../../../src/app-data/kinds/ir/IrMeasurement.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAEnD,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAEvC;;;;;;GAMG;AAEH,MAAM,WAAW,aAAc,SAAQ,eAAe;IACpD,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;CAClB"}

package/lib-esm/app-data/kinds/ir/IrMeasurement.js

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=IrMeasurement.js.map

package/lib-esm/app-data/kinds/ir/IrMeasurement.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"IrMeasurement.js","sourceRoot":"","sources":["../../../../src/app-data/kinds/ir/IrMeasurement.ts"],"names":[],"mappings":""}

package/lib-esm/app-data/kinds/ir/IrPeak.d.ts

@@ -1,8 +0,0 @@
-export type IrPeakKind = 'S' | 'w' | 'm';
-export interface IrPeak {
-    wavenumber: number;
-    absorbance: number;
-    transmittance: number;
-    kind: IrPeakKind;
-}
-//# sourceMappingURL=IrPeak.d.ts.map

package/lib-esm/app-data/kinds/ir/IrPeak.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"IrPeak.d.ts","sourceRoot":"","sources":["../../../../src/app-data/kinds/ir/IrPeak.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,UAAU,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,CAAC;AAEzC,MAAM,WAAW,MAAM;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,MAAM,CAAC;IACtB,IAAI,EAAE,UAAU,CAAC;CAClB"}

package/lib-esm/app-data/kinds/ir/IrPeak.js

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=IrPeak.js.map

package/lib-esm/app-data/kinds/ir/IrPeak.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"IrPeak.js","sourceRoot":"","sources":["../../../../src/app-data/kinds/ir/IrPeak.ts"],"names":[],"mappings":""}

package/lib-esm/app-data/kinds/ir/index.d.ts

@@ -1,5 +0,0 @@
-export * from './irAutoPeakPickingEnhancer';
-export * from './IrMeasurement';
-export * from './irMeasurementEnhancer';
-export * from './IrPeak';
-//# sourceMappingURL=index.d.ts.map

package/lib-esm/app-data/kinds/ir/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/app-data/kinds/ir/index.ts"],"names":[],"mappings":"AAAA,cAAc,6BAA6B,CAAC;AAC5C,cAAc,iBAAiB,CAAC;AAChC,cAAc,yBAAyB,CAAC;AACxC,cAAc,UAAU,CAAC"}

package/lib-esm/app-data/kinds/ir/index.js

@@ -1,5 +0,0 @@
-export * from './irAutoPeakPickingEnhancer';
-export * from './IrMeasurement';
-export * from './irMeasurementEnhancer';
-export * from './IrPeak';
-//# sourceMappingURL=index.js.map

package/lib-esm/app-data/kinds/ir/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/app-data/kinds/ir/index.ts"],"names":[],"mappings":"AAAA,cAAc,6BAA6B,CAAC;AAC5C,cAAc,iBAAiB,CAAC;AAChC,cAAc,yBAAyB,CAAC;AACxC,cAAc,UAAU,CAAC"}

package/lib-esm/app-data/kinds/ir/irAutoPeakPickingEnhancer.d.ts

@@ -1,20 +0,0 @@
-import { GSDOptions } from 'ml-gsd';
-import type { Shape1D } from 'ml-peak-shape-generator';
-import type { IrMeasurement } from './IrMeasurement';
-export interface AutoPeakPickingOptions extends GSDOptions {
-    /** x variable label, by default 'x' */
-    xVariable?: string;
-    /** y variable label, by default 'y' */
-    yVariable?: string;
-    shape?: Shape1D;
-    /** First X value for the peak picking (default: first X value */
-    from?: number;
-    /** Last X value for the peak picking (default: last X value */
-    to?: number;
-    /** Minimal peak width */
-    minPeakWidth?: number;
-}
-/** Based on a x value we will return a peak*/
-export declare function irAutoPeakPickingEnhancer(measurement: IrMeasurement, options?: AutoPeakPickingOptions): never[] | undefined;
-export declare function getIrAutoPeakPickingEnhancer(options: AutoPeakPickingOptions | undefined): (measurement: IrMeasurement) => never[] | undefined;
-//# sourceMappingURL=irAutoPeakPickingEnhancer.d.ts.map

package/lib-esm/app-data/kinds/ir/irAutoPeakPickingEnhancer.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"irAutoPeakPickingEnhancer.d.ts","sourceRoot":"","sources":["../../../../src/app-data/kinds/ir/irAutoPeakPickingEnhancer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAO,UAAU,EAAE,MAAM,QAAQ,CAAC;AACzC,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,yBAAyB,CAAC;AAGvD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAGrD,MAAM,WAAW,sBAAuB,SAAQ,UAAU;IACxD,uCAAuC;IACvC,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,uCAAuC;IACvC,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,iEAAiE;IACjE,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,+DAA+D;IAC/D,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,yBAAyB;IACzB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED,8CAA8C;AAC9C,wBAAgB,yBAAyB,CACvC,WAAW,EAAE,aAAa,EAC1B,OAAO,GAAE,sBAA2B,uBA8CrC;AAED,wBAAgB,4BAA4B,CAC1C,OAAO,EAAE,sBAAsB,GAAG,SAAS,iBAEtB,aAAa,yBAEnC"}

package/lib-esm/app-data/kinds/ir/irAutoPeakPickingEnhancer.js

@@ -1,50 +0,0 @@
-import { gsd } from 'ml-gsd';
-import { xMinMaxValues } from 'ml-spectra-processing';
-/** Based on a x value we will return a peak*/
-export function irAutoPeakPickingEnhancer(measurement, options = {}) {
-    const { xVariable = 'x', yVariable = 'y', minPeakWidth } = options;
-    // we throw if there are more than one spectrum
-    if (measurement.data.length > 1) {
-        throw new Error('autoPeakPickingEnhancer can only be applied if there is only on measurement data');
-    }
-    if (measurement.data.length === 0)
-        return;
-    const datum = measurement.data[0];
-    const x = datum.variables[xVariable]?.data;
-    const y = datum.variables[yVariable]?.data;
-    if (!x || !y)
-        return [];
-    const { from, to } = options;
-    let peaks = gsd({ x, y }, options);
-    if (from !== undefined) {
-        peaks = peaks.filter((peak) => peak.x >= from);
-    }
-    if (to !== undefined) {
-        peaks = peaks.filter((peak) => peak.x <= to);
-    }
-    if (minPeakWidth) {
-        peaks = peaks.filter((peak) => peak.width >= minPeakWidth);
-    }
-    const minMaxTransmittance = xMinMaxValues(datum.variables.t.data);
-    const results = peaks.map((peak) => ({
-        wavenumber: datum.variables.x.data[peak.index],
-        absorbance: datum.variables.a.data[peak.index],
-        transmittance: datum.variables.t.data[peak.index] / 100,
-        kind: getPeakKind(datum.variables.t.data[peak.index], minMaxTransmittance.min, minMaxTransmittance.max),
-    }));
-    measurement.peaks = results;
-}
-export function getIrAutoPeakPickingEnhancer(options) {
-    return (measurement) => irAutoPeakPickingEnhancer(measurement, options);
-}
-function getPeakKind(transmittance, minTransmittance, maxTransmittance) {
-    const position = (maxTransmittance - transmittance) / (maxTransmittance - minTransmittance);
-    if (position < 0.33) {
-        return 'w';
-    }
-    else if (position < 0.66) {
-        return 'm';
-    }
-    return 'S';
-}
-//# sourceMappingURL=irAutoPeakPickingEnhancer.js.map

package/lib-esm/app-data/kinds/ir/irAutoPeakPickingEnhancer.js.map

@@ -1 +0,0 @@
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package/lib-esm/app-data/kinds/ir/irMeasurementEnhancer.d.ts

@@ -1,8 +0,0 @@
-import type { MeasurementBase } from '../../index';
-/**
- * we add missing absorbance / transmittance
- * variable a = absorbance
- * variable t = transmittance
- */
-export declare function irMeasurementEnhancer(measurement: MeasurementBase): void;
-//# sourceMappingURL=irMeasurementEnhancer.d.ts.map

package/lib-esm/app-data/kinds/ir/irMeasurementEnhancer.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"irMeasurementEnhancer.d.ts","sourceRoot":"","sources":["../../../../src/app-data/kinds/ir/irMeasurementEnhancer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAEnD;;;;GAIG;AAEH,wBAAgB,qBAAqB,CAAC,WAAW,EAAE,eAAe,QA0CjE"}

package/lib-esm/app-data/kinds/ir/irMeasurementEnhancer.js

@@ -1,47 +0,0 @@
-/**
- * we add missing absorbance / transmittance
- * variable a = absorbance
- * variable t = transmittance
- */
-export function irMeasurementEnhancer(measurement) {
-    for (const datum of measurement.data) {
-        const variables = datum.variables;
-        const yVariable = variables.y;
-        let absorbance = true;
-        if (yVariable.label.toLowerCase().includes('trans')) {
-            absorbance = false;
-        }
-        if (absorbance) {
-            variables.a = { ...yVariable };
-            variables.a.data = variables.a.data.slice();
-            variables.t = {
-                data: yVariable.data.map((absorbance) => 10 ** -absorbance * 100),
-                label: 'Transmittance (%)',
-                units: '',
-            };
-        }
-        else {
-            const factor = yVariable.label.includes('%') ||
-                yVariable.label.toLowerCase().includes('percent')
-                ? 100
-                : 1;
-            variables.a = {
-                data: yVariable.data.map((transmittance) => -Math.log10(transmittance / factor)),
-                label: 'Absorbance',
-                units: '',
-            };
-            if (factor === 100) {
-                variables.t = { ...yVariable };
-                variables.t.data = variables.t.data.slice();
-            }
-            else {
-                variables.t = {
-                    units: '',
-                    label: 'Transmittance (%)',
-                    data: yVariable.data.map((transmittance) => transmittance * 100),
-                };
-            }
-        }
-    }
-}
-//# sourceMappingURL=irMeasurementEnhancer.js.map

package/lib-esm/app-data/kinds/ir/irMeasurementEnhancer.js.map

@@ -1 +0,0 @@
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package/lib-esm/app-data/kinds/iv/IvMeasurement.d.ts

@@ -1,3 +0,0 @@
-import type { MeasurementBase } from '../../index';
-export type IvMeasurement = MeasurementBase;
-//# sourceMappingURL=IvMeasurement.d.ts.map

package/lib-esm/app-data/kinds/iv/IvMeasurement.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"IvMeasurement.d.ts","sourceRoot":"","sources":["../../../../src/app-data/kinds/iv/IvMeasurement.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAEnD,MAAM,MAAM,aAAa,GAAG,eAAe,CAAC"}