npm - react-science - Versions diffs - 3.0.0 → 4.0.0 - Mend

react-science 3.0.0 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (239) hide show

package/lib/app/hooks/file-loading.d.ts CHANGED Viewed

@@ -1,7 +1,8 @@
 import { UseQueryResult } from '@tanstack/react-query';
+import type { FifoLogger } from 'fifo-logger';
 import { FileCollection } from 'filelist-utils';
-import { AppDispatch } from '../../app-data/index';
-type LoadFn = (files: File[] | FileCollection, dispatch: AppDispatch) => Promise<void>;
+import { AppDispatch } from '../../app-data';
+type LoadFn = (files: File[] | FileCollection, logger: FifoLogger, dispatch: AppDispatch) => Promise<void>;
 export declare function useLoadFileCollectionFromHash(onLoad: LoadFn): UseQueryResult<true | null>;
 export declare function useDropFiles(onLoad: LoadFn): (files: File[]) => void;
 export {};

package/lib/app/hooks/file-loading.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"file-loading.d.ts","sourceRoot":"","sources":["../../../src/app/hooks/file-loading.ts"],"names":[],"mappings":"AAAA,OAAO,EAAY,cAAc,EAAE,MAAM,uBAAuB,CAAC;AACjE,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAC9C,OAAO,EAAE,cAAc,EAA+B,MAAM,gBAAgB,CAAC;AAG7E,OAAO,EAAE,WAAW,EAAkB,MAAM,gBAAgB,CAAC;AAG7D,KAAK,MAAM,GAAG,CACZ,KAAK,EAAE,IAAI,EAAE,GAAG,cAAc,EAC9B,MAAM,EAAE,UAAU,EAClB,QAAQ,EAAE,WAAW,KAClB,OAAO,CAAC,IAAI,CAAC,CAAC;AAEnB,wBAAgB,6BAA6B,CAC3C,MAAM,EAAE,MAAM,GACb,cAAc,CAAC,IAAI,GAAG,IAAI,CAAC,CAsB7B;AAED,wBAAgB,YAAY,CAAC,MAAM,EAAE,MAAM,WAI/B,IAAI,EAAE,UAKjB"}

package/lib/app/hooks/file-loading.js CHANGED Viewed

@@ -4,13 +4,14 @@ exports.useDropFiles = exports.useLoadFileCollectionFromHash = void 0;
 const react_query_1 = require("@tanstack/react-query");
 const filelist_utils_1 = require("filelist-utils");
 const react_1 = require("react");
-const index_1 = require("../../app-data/index");
-const index_2 = require("../../components/index");
+const app_data_1 = require("../../app-data");
+const components_1 = require("../../components");
 function useLoadFileCollectionFromHash(onLoad) {
-    const appDispatch = (0, index_1.useAppDispatch)();
-    const hashParams = (0, index_2.useHashSearchParams)();
+    const logger = (0, components_1.useFifoLogger)();
+    const appDispatch = (0, app_data_1.useAppDispatch)();
+    const hashParams = (0, components_1.useHashSearchParams)();
     const filelistUrl = hashParams.get('filelist');
-    const query = (0, react_query_1.useQuery)({
+    return (0, react_query_1.useQuery)({
         queryKey: ['filelist', filelistUrl],
         queryFn: async () => {
             if (!filelistUrl) {
@@ -23,19 +24,18 @@ function useLoadFileCollectionFromHash(onLoad) {
                 entries: data,
                 baseURL,
             });
-            void onLoad(fileCollection, appDispatch);
+            void onLoad(fileCollection, logger, appDispatch);
             return true;
         },
     });
-    return query;
 }
 exports.useLoadFileCollectionFromHash = useLoadFileCollectionFromHash;
 function useDropFiles(onLoad) {
-    const dispatch = (0, index_1.useAppDispatch)();
-    const onDrop = (0, react_1.useCallback)((files) => {
-        void onLoad(files, dispatch);
-    }, [dispatch, onLoad]);
-    return onDrop;
+    const dispatch = (0, app_data_1.useAppDispatch)();
+    const logger = (0, components_1.useFifoLogger)();
+    return (0, react_1.useCallback)((files) => {
+        void onLoad(files, logger, dispatch);
+    }, [dispatch, onLoad, logger]);
 }
 exports.useDropFiles = useDropFiles;
 //# sourceMappingURL=file-loading.js.map

package/lib/app/hooks/file-loading.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"file-loading.js","sourceRoot":"","sources":["../../../src/app/hooks/file-loading.ts"],"names":[],"mappings":";;;AAAA,uDAAiE;AAEjE,mDAA6E;AAC7E,iCAAoC;AAEpC,6CAA6D;AAC7D,iDAAsE;AAQtE,SAAgB,6BAA6B,CAC3C,MAAc;IAEd,MAAM,MAAM,GAAG,IAAA,0BAAa,GAAE,CAAC;IAC/B,MAAM,WAAW,GAAG,IAAA,yBAAc,GAAE,CAAC;IACrC,MAAM,UAAU,GAAG,IAAA,gCAAmB,GAAE,CAAC;IACzC,MAAM,WAAW,GAAG,UAAU,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;IAC/C,OAAO,IAAA,sBAAQ,EAAC;QACd,QAAQ,EAAE,CAAC,UAAU,EAAE,WAAW,CAAC;QACnC,OAAO,EAAE,KAAK,IAAI,EAAE;YAClB,IAAI,CAAC,WAAW,EAAE,CAAC;gBACjB,OAAO,IAAI,CAAC;YACd,CAAC;YACD,MAAM,OAAO,GAAG,MAAM,KAAK,CAAC,WAAW,CAAC,CAAC;YACzC,MAAM,IAAI,GAAG,MAAM,OAAO,CAAC,IAAI,EAAE,CAAC;YAClC,MAAM,OAAO,GAAG,WAAW,CAAC,OAAO,CAAC,UAAU,EAAE,GAAG,CAAC,CAAC;YACrD,MAAM,cAAc,GAAG,MAAM,IAAA,4CAA2B,EAAC;gBACvD,OAAO,EAAE,IAAI;gBACb,OAAO;aACR,CAAC,CAAC;YACH,KAAK,MAAM,CAAC,cAAc,EAAE,MAAM,EAAE,WAAW,CAAC,CAAC;YACjD,OAAO,IAAI,CAAC;QACd,CAAC;KACF,CAAC,CAAC;AACL,CAAC;AAxBD,sEAwBC;AAED,SAAgB,YAAY,CAAC,MAAc;IACzC,MAAM,QAAQ,GAAG,IAAA,yBAAc,GAAE,CAAC;IAClC,MAAM,MAAM,GAAG,IAAA,0BAAa,GAAE,CAAC;IAC/B,OAAO,IAAA,mBAAW,EAChB,CAAC,KAAa,EAAE,EAAE;QAChB,KAAK,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAC;IACvC,CAAC,EACD,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,CAAC,CAC3B,CAAC;AACJ,CAAC;AATD,oCASC"}

package/lib/app/panels/SignalProcessingPanel.js CHANGED Viewed

@@ -24,7 +24,7 @@ const defaultFilters = FilterXYSchema_json_1.default.anyOf.map(({ properties })
 });
 function SignalProcessingPanel(props) {
     const { filters = [], onChange } = props;
-    return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)(index_1.Table, { children: [(0, jsx_runtime_1.jsxs)(index_1.Table.Header, { children: [(0, jsx_runtime_1.jsx)(index_1.ValueRenderers.Header, { value: " " }), (0, jsx_runtime_1.jsx)(index_1.ValueRenderers.Header, { value: "Name" }), (0, jsx_runtime_1.jsx)(index_1.ValueRenderers.Header, { value: "Options" })] }), filters.map(({ name, options }, i) => ((0, jsx_runtime_1.jsxs)(index_1.Table.Row, { hasBorder: true, children: [(0, jsx_runtime_1.jsx)(index_1.ValueRenderers.Component, { children: (0, jsx_runtime_1.jsxs)("div", { style: { display: 'flex', gap: '3px' }, children: [(0, jsx_runtime_1.jsx)(index_1.Button, { style: { width: '15px' }, intent: "success", onClick: () => {
+    return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)(index_1.Table, { children: [(0, jsx_runtime_1.jsxs)(index_1.Table.Header, { children: [(0, jsx_runtime_1.jsx)(index_1.ValueRenderers.Header, { value: " " }), (0, jsx_runtime_1.jsx)(index_1.ValueRenderers.Header, { value: "Name" }), (0, jsx_runtime_1.jsx)(index_1.ValueRenderers.Header, { value: "Options" })] }), filters.map(({ name, options }, i) => ((0, jsx_runtime_1.jsxs)(index_1.Table.Row, { bordered: true, children: [(0, jsx_runtime_1.jsx)(index_1.ValueRenderers.Component, { children: (0, jsx_runtime_1.jsxs)("div", { style: { display: 'flex', gap: '3px' }, children: [(0, jsx_runtime_1.jsx)(index_1.Button, { style: { width: '15px' }, intent: "success", onClick: () => {
                                                 const newFilters = [...filters];
                                                 newFilters.splice(i + 1, 0, getDefaultFilter(defaultFilters[0]));
                                                 onChange?.(newFilters);

package/lib/app/panels/SignalProcessingPanel.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/lib/app/panels/measurement-info/MeasurementInfoPanelAccordion.js CHANGED Viewed

@@ -5,7 +5,7 @@ const jsx_runtime_1 = require("react/jsx-runtime");
 const index_1 = require("../../../components/index");
 const MeasurementInfoPanel_1 = require("./MeasurementInfoPanel");
 function MeasurementInfoPanelAccordion() {
-    return ((0, jsx_runtime_1.jsx)(index_1.Accordion.Item, { title: "Measurement info", children: (0, jsx_runtime_1.jsx)(MeasurementInfoPanel_1.MeasurementInfoPanel, {}) }));
+    return ((0, jsx_runtime_1.jsx)(index_1.Accordion.Item, { title: "Measurement info", defaultOpened: true, children: (0, jsx_runtime_1.jsx)(MeasurementInfoPanel_1.MeasurementInfoPanel, {}) }));
 }
 exports.MeasurementInfoPanelAccordion = MeasurementInfoPanelAccordion;
 //# sourceMappingURL=MeasurementInfoPanelAccordion.js.map

package/lib/app/panels/measurement-info/MeasurementInfoPanelAccordion.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"MeasurementInfoPanelAccordion.js","sourceRoot":"","sources":["../../../../src/app/panels/measurement-info/MeasurementInfoPanelAccordion.tsx"],"names":[],"mappings":";;;;AAAA,qDAAsD;AAEtD,iEAA8D;AAE9D,SAAgB,6BAA6B;IAC3C,OAAO,CACL,uBAAC,iBAAS,CAAC,IAAI,IAAC,KAAK,EAAC,kBAAkB,EAAC,aAAa,kBACpD,uBAAC,2CAAoB,KAAG,GACT,CAClB,CAAC;AACJ,CAAC;AAND,sEAMC"}

package/lib/app-data/loaders/biologicLoader.d.ts CHANGED Viewed

@@ -1,11 +1,11 @@
+import type { FifoLogger } from 'fifo-logger';
 import type { FileCollection } from 'filelist-utils';
 import type { Measurements } from '../index';
-import { ParserLog } from './utility/parserLog';
 /**
  *
  * @param fileCollection - the dragged file/files
  * @param logs - pass to append errors to the logs, it mutates the external array.
  * @returns - new measurements object to be merged
  */
-export declare function biologicLoader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+export declare function biologicLoader(fileCollection: FileCollection, logger?: FifoLogger): Promise<Partial<Measurements>>;
 //# sourceMappingURL=biologicLoader.d.ts.map

package/lib/app-data/loaders/biologicLoader.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"biologicLoader.d.ts","sourceRoot":"","sources":["../../../src/app-data/loaders/biologicLoader.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAC9C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAErD,OAAO,KAAK,EAAmB,YAAY,EAAE,MAAM,UAAU,CAAC;AAO9D;;;;;GAKG;AACH,wBAAsB,cAAc,CAClC,cAAc,EAAE,cAAc,EAC9B,MAAM,CAAC,EAAE,UAAU,GAClB,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CA2DhC"}

package/lib/app-data/loaders/biologicLoader.js CHANGED Viewed

@@ -3,14 +3,13 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.biologicLoader = void 0;
 const biologic_converter_1 = require("biologic-converter");
 const getMeasurementInfoFromFile_1 = require("./utility/getMeasurementInfoFromFile");
-const parserLog_1 = require("./utility/parserLog");
 /**
  *
  * @param fileCollection - the dragged file/files
  * @param logs - pass to append errors to the logs, it mutates the external array.
  * @returns - new measurements object to be merged
  */
-async function biologicLoader(fileCollection, logs) {
+async function biologicLoader(fileCollection, logger) {
     const measurements = {};
     const entries = [];
     for (const file of fileCollection.files) {
@@ -53,8 +52,8 @@ async function biologicLoader(fileCollection, logs) {
         catch (error) {
             //send error to UI to show to User ?
             if (error instanceof Error) {
-                if (logs) {
-                    logs.push((0, parserLog_1.createLogEntry)({ error, relativePath: file.relativePath }));
+                if (logger) {
+                    logger.error(error);
                 }
                 else {
                     throw error;
@@ -62,6 +61,7 @@ async function biologicLoader(fileCollection, logs) {
             }
         }
     }
+    logger?.debug(`Loaded ${entries.length} entries with biologicLoader`);
     measurements.iv = { entries };
     return measurements;
 }

package/lib/app-data/loaders/biologicLoader.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/app-data/loaders/cdfLoader.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
+import type { FifoLogger } from 'fifo-logger';
 import type { FileCollection } from 'filelist-utils';
 import type { Measurements } from '../index';
-import { ParserLog } from './utility/parserLog';
-export declare function cdfLoader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+export declare function cdfLoader(fileCollection: FileCollection, logger?: FifoLogger): Promise<Partial<Measurements>>;
 //# sourceMappingURL=cdfLoader.d.ts.map

package/lib/app-data/loaders/cdfLoader.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/app-data/loaders/cdfLoader.js CHANGED Viewed

@@ -4,10 +4,10 @@ exports.cdfLoader = void 0;
 const netcdfjs_1 = require("netcdfjs");
 const index_1 = require("../../components/index");
 const getMeasurementInfoFromFile_1 = require("./utility/getMeasurementInfoFromFile");
-const parserLog_1 = require("./utility/parserLog");
-async function cdfLoader(fileCollection, logs) {
+async function cdfLoader(fileCollection, logger) {
     const newMeasurements = {};
     let kind;
+    let count = 0;
     for (const file of fileCollection) {
         if (/\.cdf$/i.test(file.name)) {
             try {
@@ -39,17 +39,13 @@ async function cdfLoader(fileCollection, logs) {
                         : chromatogram(reader),
                 };
                 newMeasurements[kind]?.entries.push(newMeasurement);
+                count++;
             }
             catch (error) {
                 if (error instanceof Error) {
                     //send error to UI ?
-                    if (logs) {
-                        logs.push((0, parserLog_1.createLogEntry)({
-                            error,
-                            parser: 'cdfLoader',
-                            message: 'error parsing file from cdfLoader',
-                            relativePath: file.relativePath,
-                        }));
+                    if (logger) {
+                        logger.error(error);
                     }
                     else {
                         throw error;
@@ -58,6 +54,7 @@ async function cdfLoader(fileCollection, logs) {
             }
         }
     }
+    logger?.debug(`Loaded ${count} measurements with cdfLoader`);
     return newMeasurements;
 }
 exports.cdfLoader = cdfLoader;

package/lib/app-data/loaders/cdfLoader.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/app-data/loaders/jcampLoader.d.ts CHANGED Viewed

@@ -1,11 +1,11 @@
+import type { FifoLogger } from 'fifo-logger';
 import type { FileCollection } from 'filelist-utils';
 import type { Measurements } from '../index';
-import { ParserLog } from './utility/parserLog';
 /**
  *
  * @param fileCollection - the dragged file/files
  * @param logger - whether to log to console or not
  * @returns - new measurements object to be merged
  */
-export declare function jcampLoader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+export declare function jcampLoader(fileCollection: FileCollection, logger?: FifoLogger): Promise<Partial<Measurements>>;
 //# sourceMappingURL=jcampLoader.d.ts.map

package/lib/app-data/loaders/jcampLoader.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"jcampLoader.d.ts","sourceRoot":"","sources":["../../../src/app-data/loaders/jcampLoader.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAC9C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAIrD,OAAO,KAAK,EAAmB,YAAY,EAAE,MAAM,UAAU,CAAC;AAI9D;;;;;GAKG;AACH,wBAAsB,WAAW,CAC/B,cAAc,EAAE,cAAc,EAC9B,MAAM,CAAC,EAAE,UAAU,GAClB,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAsDhC"}

package/lib/app-data/loaders/jcampLoader.js CHANGED Viewed

@@ -4,14 +4,14 @@ exports.jcampLoader = void 0;
 const jcampconverter_1 = require("jcampconverter");
 const index_1 = require("../../components/index");
 const getMeasurementInfoFromFile_1 = require("./utility/getMeasurementInfoFromFile");
-const parserLog_1 = require("./utility/parserLog");
 /**
  *
  * @param fileCollection - the dragged file/files
  * @param logger - whether to log to console or not
  * @returns - new measurements object to be merged
  */
-async function jcampLoader(fileCollection, logs) {
+async function jcampLoader(fileCollection, logger) {
+    let count = 0;
     const newMeasurements = {};
     for (const file of fileCollection) {
         if (/(?:\.jdx|\.dx)$/i.test(file.name)) {
@@ -46,21 +46,16 @@ async function jcampLoader(fileCollection, logs) {
                             meta: measurement.meta,
                             data: normalizeSpectra(measurement.spectra),
                         };
+                        count++;
                         Object.assign(newMeasurement.info, measurement.info);
                         newMeasurements[kind]?.entries.push(newMeasurement);
                     }
                 }
             }
             catch (error) {
-                // send error to UI ?
                 if (error instanceof Error) {
-                    if (logs) {
-                        logs.push((0, parserLog_1.createLogEntry)({
-                            error,
-                            parser: 'jcamp converter',
-                            relativePath: file.relativePath,
-                            message: 'error parsing jdx or dx file',
-                        }));
+                    if (logger) {
+                        logger?.error(error);
                     }
                     else {
                         throw error;
@@ -69,6 +64,7 @@ async function jcampLoader(fileCollection, logs) {
             }
         }
     }
+    logger?.debug(`Loaded ${count} measurements with jcampLoader`);
     return newMeasurements;
 }
 exports.jcampLoader = jcampLoader;
@@ -94,10 +90,11 @@ function normalizeSpectra(spectra) {
                 const variable = variables[key];
                 if (variable.label)
                     continue;
-                variable.label = variable.name || variable.symbol || key;
-                if (variable.units && !variable.label.includes(variable.units)) {
-                    variable.label += ` [${variable.units}]`;
+                let label = variable.name || variable.symbol || key;
+                if (variable.units && !label.includes(variable.units)) {
+                    label += ` [${variable.units}]`;
                 }
+                variable.label = label;
             }
         }
         data.push({ variables });

package/lib/app-data/loaders/jcampLoader.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"jcampLoader.js","sourceRoot":"","sources":["../../../src/app-data/loaders/jcampLoader.ts"],"names":[],"mappings":";;;AAEA,mDAAyC;AAEzC,kDAAgD;AAGhD,qFAAkF;AAElF;;;;;GAKG;AACI,KAAK,UAAU,WAAW,CAC/B,cAA8B,EAC9B,MAAmB;IAEnB,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,MAAM,eAAe,GAA0B,EAAE,CAAC;IAClD,KAAK,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;QAClC,IAAI,kBAAkB,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;YACvC,IAAI,CAAC;gBACH,yBAAyB;gBACzB,4CAA4C;gBAC5C,MAAM,MAAM,GAAG,IAAA,wBAAO,EAAC,MAAM,IAAI,CAAC,IAAI,EAAE,EAAE,EAAE,iBAAiB,EAAE,IAAI,EAAE,CAAC,CAAC;gBACvE,KAAK,MAAM,WAAW,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;oBACzC,IAAI,IAAiC,CAAC;oBACtC,IAAI,WAAW,EAAE,QAAQ,EAAE,KAAK,CAAC,cAAc,CAAC,EAAE,CAAC;wBACjD,IAAI,GAAG,IAAI,CAAC;oBACd,CAAC;yBAAM,IAAI,WAAW,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,CAAC,EAAE,CAAC;wBAClD,IAAI,GAAG,OAAO,CAAC;oBACjB,CAAC;yBAAM,IAAI,WAAW,EAAE,QAAQ,EAAE,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;wBAC/C,IAAI,GAAG,IAAI,CAAC;oBACd,CAAC;yBAAM,IAAI,WAAW,EAAE,QAAQ,EAAE,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;wBACjD,IAAI,GAAG,MAAM,CAAC;oBAChB,CAAC;yBAAM,IAAI,WAAW,EAAE,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,EAAE,CAAC;wBAChD,IAAI,GAAG,KAAK,CAAC;oBACf,CAAC;oBACD,IAAI,IAAI,EAAE,CAAC;wBACT,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,EAAE,CAAC;4BAC3B,eAAe,CAAC,IAAI,CAAC,GAAG,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC;wBAC1C,CAAC;wBACD,IAAA,cAAM,EACJ,eAAe,CAAC,IAAI,CAAC,EACrB,0CAA0C,CAC3C,CAAC;wBACF,MAAM,cAAc,GAAG;4BACrB,GAAG,IAAA,uDAA0B,EAAC,IAAI,EAAE,WAAW,CAAC,KAAK,IAAI,EAAE,CAAC;4BAC5D,IAAI,EAAE,WAAW,CAAC,IAAI;4BACtB,IAAI,EAAE,gBAAgB,CAAC,WAAW,CAAC,OAAO,CAAC;yBAC5C,CAAC;wBACF,KAAK,EAAE,CAAC;wBACR,MAAM,CAAC,MAAM,CAAC,cAAc,CAAC,IAAI,EAAE,WAAW,CAAC,IAAI,CAAC,CAAC;wBACrD,eAAe,CAAC,IAAI,CAAC,EAAE,OAAO,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;oBACtD,CAAC;gBACH,CAAC;YACH,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,IAAI,KAAK,YAAY,KAAK,EAAE,CAAC;oBAC3B,IAAI,MAAM,EAAE,CAAC;wBACX,MAAM,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC;oBACvB,CAAC;yBAAM,CAAC;wBACN,MAAM,KAAK,CAAC;oBACd,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;IAED,MAAM,EAAE,KAAK,CAAC,UAAU,KAAK,gCAAgC,CAAC,CAAC;IAC/D,OAAO,eAAe,CAAC;AACzB,CAAC;AAzDD,kCAyDC;AAED,SAAS,gBAAgB,CAAC,OAAY;IACpC,MAAM,IAAI,GAAU,EAAE,CAAC;IACvB,KAAK,MAAM,QAAQ,IAAI,OAAO,EAAE,CAAC;QAC/B,IAAI,SAAS,GAAG,QAAQ,CAAC,SAAS,CAAC;QACnC,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,SAAS,GAAG,EAAE,CAAC;YACf,SAAS,CAAC,CAAC,GAAG;gBACZ,KAAK,EAAE,QAAQ,CAAC,MAAM;gBACtB,MAAM,EAAE,GAAG;gBACX,IAAI,EAAE,QAAQ,CAAC,IAAI,CAAC,CAAC,IAAI,QAAQ,CAAC,IAAI,CAAC,CAAC;aACzC,CAAC;YACF,SAAS,CAAC,CAAC,GAAG;gBACZ,KAAK,EAAE,QAAQ,CAAC,MAAM;gBACtB,MAAM,EAAE,GAAG;gBACX,IAAI,EAAE,QAAQ,CAAC,IAAI,CAAC,CAAC,IAAI,QAAQ,CAAC,IAAI,CAAC,CAAC;aACzC,CAAC;QACJ,CAAC;aAAM,CAAC;YACN,KAAK,MAAM,GAAG,IAAI,SAAS,EAAE,CAAC;gBAC5B,MAAM,QAAQ,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC;gBAChC,IAAI,QAAQ,CAAC,KAAK;oBAAE,SAAS;gBAC7B,IAAI,KAAK,GAAW,QAAQ,CAAC,IAAI,IAAI,QAAQ,CAAC,MAAM,IAAI,GAAG,CAAC;gBAC5D,IAAI,QAAQ,CAAC,KAAK,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;oBACtD,KAAK,IAAI,KAAK,QAAQ,CAAC,KAAK,GAAG,CAAC;gBAClC,CAAC;gBACD,QAAQ,CAAC,KAAK,GAAG,KAAK,CAAC;YACzB,CAAC;QACH,CAAC;QACD,IAAI,CAAC,IAAI,CAAC,EAAE,SAAS,EAAE,CAAC,CAAC;IAC3B,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC"}

package/lib/app-data/loaders/loadMeasurements.d.ts CHANGED Viewed

@@ -1,13 +1,14 @@
+import type { FifoLogger } from 'fifo-logger';
 import type { FileCollection } from 'filelist-utils';
-import { Measurements, Enhancers } from '../index';
+import { Enhancers, Measurements } from '../index';
 import { MeasurementsLoader } from './utility/measurementLoader';
 import type { ParserLog } from './utility/parserLog';
 export interface LoadOptions {
     loaders?: MeasurementsLoader[];
     enhancers?: Partial<Enhancers>;
-    logger?: boolean;
+    logger?: FifoLogger;
 }
-export declare function loadMeasurements(fileCollection: FileCollection, options?: LoadOptions): Promise<{
+export declare function loadMeasurements(fileCollection: FileCollection, options: LoadOptions): Promise<{
     measurements: Partial<Measurements>;
     logs: ParserLog[];
 }>;

package/lib/app-data/loaders/loadMeasurements.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"loadMeasurements.d.ts","sourceRoot":"","sources":["../../../src/app-data/loaders/loadMeasurements.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAGrD,OAAO,~~EAAE,YAAY,~~EAAW,SAAS,EAAmB,MAAM,UAAU,CAAC;AAE7E,OAAO,EACL,kBAAkB,EAEnB,MAAM,6BAA6B,CAAC;AACrC,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAErD,MAAM,WAAW,WAAW;IAC1B,OAAO,CAAC,EAAE,kBAAkB,EAAE,CAAC;IAC/B,SAAS,CAAC,EAAE,OAAO,CAAC,SAAS,CAAC,CAAC;IAC/B,MAAM,CAAC,EAAE,~~OAAO~~,CAAC;~~CAClB~~;AAED,wBAAsB,gBAAgB,CACpC,cAAc,EAAE,cAAc,EAC9B,OAAO,~~GAAE~~,~~WAAgB~~;;;~~GAkB1B~~"}
1	+ {"version":3,"file":"loadMeasurements.d.ts","sourceRoot":"","sources":["../../../src/app-data/loaders/loadMeasurements.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAC9C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAGrD,OAAO,EAAW,SAAS,EAAmB,YAAY,EAAE,MAAM,UAAU,CAAC;AAE7E,OAAO,EACL,kBAAkB,EAEnB,MAAM,6BAA6B,CAAC;AACrC,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAErD,MAAM,WAAW,WAAW;IAC1B,OAAO,CAAC,EAAE,kBAAkB,EAAE,CAAC;IAC/B,SAAS,CAAC,EAAE,OAAO,CAAC,SAAS,CAAC,CAAC;IAC/B,MAAM,CAAC,EAAE,UAAU,CAAC;CACrB;AAED,wBAAsB,gBAAgB,CACpC,cAAc,EAAE,cAAc,EAC9B,OAAO,EAAE,WAAW;;;GAkBrB"}

package/lib/app-data/loaders/loadMeasurements.js CHANGED Viewed

@@ -4,14 +4,14 @@ exports.loadMeasurements = void 0;
 const ml_spectra_processing_1 = require("ml-spectra-processing");
 const index_1 = require("../index");
 const measurementLoader_1 = require("./utility/measurementLoader");
-async function loadMeasurements(fileCollection, options = {}) {
+async function loadMeasurements(fileCollection, options) {
     const measurements = {};
     const logs = [];
-    const { loaders = [], enhancers = {}, logger = true } = options;
+    const { loaders = [], enhancers = {}, logger } = options;
     for (const loader of loaders) {
         // TODO: load in parallel
         // eslint-disable-next-line no-await-in-loop
-        const loaderData = await loader(fileCollection, logger ? logs : undefined);
+        const loaderData = await loader(fileCollection, logger);
         for (const { entries } of Object.values(loaderData)) {
             for (const entry of entries) {
                 computeMinMax(entry);

package/lib/app-data/loaders/loadMeasurements.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"loadMeasurements.js","sourceRoot":"","sources":["../../../src/app-data/loaders/loadMeasurements.ts"],"names":[],"mappings":";;;AAEA,iEAAsD;AAEtD,oCAA6E;AAE7E,mEAGqC;AAS9B,KAAK,UAAU,gBAAgB,CACpC,cAA8B,EAC9B,OAAoB;IAEpB,MAAM,YAAY,GAA0B,EAAE,CAAC;IAC/C,MAAM,IAAI,GAAgB,EAAE,CAAC;IAC7B,MAAM,EAAE,OAAO,GAAG,EAAE,EAAE,SAAS,GAAG,EAAE,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;IACzD,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;QAC7B,yBAAyB;QACzB,4CAA4C;QAC5C,MAAM,UAAU,GAAG,MAAM,MAAM,CAAC,cAAc,EAAE,MAAM,CAAC,CAAC;QACxD,KAAK,MAAM,EAAE,OAAO,EAAE,IAAI,MAAM,CAAC,MAAM,CAAC,UAAU,CAAC,EAAE,CAAC;YACpD,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;gBAC5B,aAAa,CAAC,KAAK,CAAC,CAAC;YACvB,CAAC;QACH,CAAC;QACD,IAAA,eAAO,EAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QAC/B,IAAA,qCAAiB,EAAC,YAAY,EAAE,UAAU,CAAC,CAAC;IAC9C,CAAC;IACD,OAAO,EAAE,YAAY,EAAE,IAAI,EAAE,CAAC;AAChC,CAAC;AApBD,4CAoBC;AAED,SAAS,aAAa,CAAC,WAA4B;IACjD,KAAK,MAAM,KAAK,IAAI,WAAW,CAAC,IAAI,EAAE,CAAC;QACrC,KAAK,MAAM,QAAQ,IAAI,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,EAAE,CAAC;YACtD,IAAI,QAAQ,CAAC,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBAC/B,qCAAqC;gBACrC,OAAO;YACT,CAAC;YACD,IAAI,QAAQ,CAAC,GAAG,KAAK,SAAS,IAAI,QAAQ,CAAC,GAAG,KAAK,SAAS,EAAE,CAAC;gBAC7D,MAAM,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAAA,qCAAa,EAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;gBAClD,QAAQ,CAAC,GAAG,GAAG,GAAG,CAAC;gBACnB,QAAQ,CAAC,GAAG,GAAG,GAAG,CAAC;YACrB,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}

package/lib/app-data/loaders/proprietary/agilent/cary500Loader.d.ts CHANGED Viewed

@@ -1,4 +1,5 @@
+import type { FifoLogger } from 'fifo-logger';
 import type { FileCollection } from 'filelist-utils';
-import { Measurements, ParserLog } from '../../../index';
-export declare function cary500Loader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+import { Measurements } from '../../../index';
+export declare function cary500Loader(fileCollection: FileCollection, logger?: FifoLogger): Promise<Partial<Measurements>>;
 //# sourceMappingURL=cary500Loader.d.ts.map

package/lib/app-data/loaders/proprietary/agilent/cary500Loader.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"cary500Loader.d.ts","sourceRoot":"","sources":["../../../../../src/app-data/loaders/proprietary/agilent/cary500Loader.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,~~EAAsB~~,~~cAAc~~,EAAE,MAAM,gBAAgB,CAAC;AAEzE,OAAO,~~EACL~~,YAAY,~~EAGZ~~,~~SAAS,EAEV,~~MAAM,gBAAgB,CAAC;AAExB,wBAAsB,aAAa,CACjC,cAAc,EAAE,cAAc,EAC9B,~~IAAI~~,CAAC,EAAE,~~SAAS~~,~~EAAE~~,~~GACjB,~~OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,~~CAkChC~~"}
1	+ {"version":3,"file":"cary500Loader.d.ts","sourceRoot":"","sources":["../../../../../src/app-data/loaders/proprietary/agilent/cary500Loader.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAC9C,OAAO,KAAK,EAAE,cAAc,EAAsB,MAAM,gBAAgB,CAAC;AAEzE,OAAO,EAGL,YAAY,EACb,MAAM,gBAAgB,CAAC;AAExB,wBAAsB,aAAa,CACjC,cAAc,EAAE,cAAc,EAC9B,MAAM,CAAC,EAAE,UAAU,GAClB,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CA2BhC"}

package/lib/app-data/loaders/proprietary/agilent/cary500Loader.js CHANGED Viewed

@@ -2,7 +2,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.cary500Loader = void 0;
 const index_1 = require("../../../index");
-async function cary500Loader(fileCollection, logs) {
+async function cary500Loader(fileCollection, logger) {
     const newMeasurements = {};
     const entries = [];
     for (const file of fileCollection) {
@@ -17,14 +17,8 @@ async function cary500Loader(fileCollection, logs) {
             }
             catch (error) {
                 if (error instanceof Error) {
-                    if (logs) {
-                        logs.push((0, index_1.createLogEntry)({
-                            kind: 'error',
-                            parser: 'cary500Loader',
-                            message: 'Error parsing cary500 experiment.',
-                            error,
-                            relativePath: file.relativePath,
-                        }));
+                    if (logger) {
+                        logger.error(error);
                     }
                     else {
                         throw error;
@@ -33,6 +27,7 @@ async function cary500Loader(fileCollection, logs) {
             }
         }
     }
+    logger?.debug(`Loaded ${entries.length} entries with cary500Loader`);
     newMeasurements.uvvis = { entries };
     return newMeasurements;
 }

package/lib/app-data/loaders/proprietary/agilent/cary500Loader.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/app-data/loaders/spcLoader.d.ts CHANGED Viewed

@@ -1,11 +1,11 @@
+import type { FifoLogger } from 'fifo-logger';
 import type { FileCollection } from 'filelist-utils';
 import type { Measurements } from '../index';
-import { ParserLog } from './utility/parserLog';
 /**
  *
  * @param fileCollection - the dragged file/files
  * @param logger - whether to log to console or not
  * @returns - new measurements object to be merged
  */
-export declare function spcLoader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+export declare function spcLoader(fileCollection: FileCollection, logger?: FifoLogger): Promise<Partial<Measurements>>;
 //# sourceMappingURL=spcLoader.d.ts.map

package/lib/app-data/loaders/spcLoader.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"spcLoader.d.ts","sourceRoot":"","sources":["../../../src/app-data/loaders/spcLoader.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAC9C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAIrD,OAAO,KAAK,EAAoC,YAAY,EAAE,MAAM,UAAU,CAAC;AAI/E;;;;;GAKG;AACH,wBAAsB,SAAS,CAC7B,cAAc,EAAE,cAAc,EAC9B,MAAM,CAAC,EAAE,UAAU,GAClB,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAgChC"}

package/lib/app-data/loaders/spcLoader.js CHANGED Viewed

@@ -4,14 +4,13 @@ exports.spcLoader = void 0;
 const spc_parser_1 = require("spc-parser");
 const index_1 = require("../../components/index");
 const getMeasurementInfoFromFile_1 = require("./utility/getMeasurementInfoFromFile");
-const parserLog_1 = require("./utility/parserLog");
 /**
  *
  * @param fileCollection - the dragged file/files
  * @param logger - whether to log to console or not
  * @returns - new measurements object to be merged
  */
-async function spcLoader(fileCollection, logs) {
+async function spcLoader(fileCollection, logger) {
     const measurements = {};
     for (const file of fileCollection) {
         if (/\.spc$/i.test(file.name)) {
@@ -31,12 +30,8 @@ async function spcLoader(fileCollection, logs) {
                 });
             }
             catch (error) {
-                if (error instanceof Error && logs) {
-                    logs.push((0, parserLog_1.createLogEntry)({
-                        parser: 'spc-parser',
-                        relativePath: file.relativePath,
-                        error,
-                    }));
+                if (error instanceof Error && logger) {
+                    logger.error(error);
                 }
                 else {
                     throw error;

package/lib/app-data/loaders/spcLoader.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/app-data/loaders/utility/measurementLoader.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
+import type { FifoLogger } from 'fifo-logger';
 import type { FileCollection } from 'filelist-utils';
 import type { Measurements } from '../../index';
-import type { ParserLog } from './parserLog';
-export type MeasurementsLoader = (fileCollection: FileCollection, logs?: ParserLog[]) => Promise<Partial<Measurements>>;
+export type MeasurementsLoader = (fileCollection: FileCollection, logger?: FifoLogger) => Promise<Partial<Measurements>>;
 export declare function mergeMeasurements(measurements: Partial<Measurements>, newMeasurements: Partial<Measurements>): void;
 //# sourceMappingURL=measurementLoader.d.ts.map

package/lib/app-data/loaders/utility/measurementLoader.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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