react-science 0.32.1 → 0.32.2

package/lib/app-data/loaders/index.js

@@ -0,0 +1,25 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./proprietary/agilent/cary500Loader"), exports);
+__exportStar(require("./utility/index"), exports);
+__exportStar(require("./biologicLoader"), exports);
+__exportStar(require("./cdfLoader"), exports);
+__exportStar(require("./jcampLoader"), exports);
+__exportStar(require("./loadMeasurements"), exports);
+__exportStar(require("./spcLoader"), exports);
+__exportStar(require("./wdfLoader"), exports);
+//# sourceMappingURL=index.js.map

package/lib/app-data/loaders/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/app-data/loaders/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,sEAAoD;AACpD,kDAAgC;AAChC,mDAAiC;AACjC,8CAA4B;AAC5B,gDAA8B;AAC9B,qDAAmC;AACnC,8CAA4B;AAC5B,8CAA4B"}

package/lib/app-data/loaders/jcampLoader.d.ts

@@ -0,0 +1,11 @@
+import type { FileCollection } from 'filelist-utils';
+import type { Measurements } from '../index';
+import { ParserLog } from './utility/parserLog';
+/**
+ *
+ * @param fileCollection - the dragged file/files
+ * @param logger - whether to log to console or not
+ * @returns - new measurements object to be merged
+ */
+export declare function jcampLoader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+//# sourceMappingURL=jcampLoader.d.ts.map

package/lib/app-data/loaders/jcampLoader.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"jcampLoader.d.ts","sourceRoot":"","sources":["../../../src/app-data/loaders/jcampLoader.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAIrD,OAAO,KAAK,EAAmB,YAAY,EAAE,MAAM,UAAU,CAAC;AAG9D,OAAO,EAAkB,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAEhE;;;;;GAKG;AACH,wBAAsB,WAAW,CAC/B,cAAc,EAAE,cAAc,EAC9B,IAAI,CAAC,EAAE,SAAS,EAAE,GACjB,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CA2DhC"}

package/lib/app-data/loaders/jcampLoader.js

@@ -0,0 +1,107 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.jcampLoader = void 0;
+const jcampconverter_1 = require("jcampconverter");
+const index_1 = require("../../components/index");
+const getMeasurementInfoFromFile_1 = require("./utility/getMeasurementInfoFromFile");
+const parserLog_1 = require("./utility/parserLog");
+/**
+ *
+ * @param fileCollection - the dragged file/files
+ * @param logger - whether to log to console or not
+ * @returns - new measurements object to be merged
+ */
+async function jcampLoader(fileCollection, logs) {
+    const newMeasurements = {};
+    for (const file of fileCollection) {
+        if (/(?:\.jdx|\.dx)$/i.test(file.name)) {
+            try {
+                // TODO: load in parallel
+                // eslint-disable-next-line no-await-in-loop
+                const parsed = (0, jcampconverter_1.convert)(await file.text(), { keepRecordsRegExp: /.*/ });
+                for (const measurement of parsed.flatten) {
+                    let kind;
+                    if (measurement?.dataType?.match(/infrared|ir/i)) {
+                        kind = 'ir';
+                    }
+                    else if (measurement?.dataType?.match(/raman/i)) {
+                        kind = 'raman';
+                    }
+                    else if (measurement?.dataType?.match(/uv/i)) {
+                        kind = 'uv';
+                    }
+                    else if (measurement?.dataType?.match(/mass/i)) {
+                        kind = 'mass';
+                    }
+                    else if (measurement?.dataType?.match(/nmr/i)) {
+                        kind = 'nmr';
+                    }
+                    if (kind) {
+                        if (!newMeasurements[kind]) {
+                            newMeasurements[kind] = { entries: [] };
+                        }
+                        (0, index_1.assert)(newMeasurements[kind], 'Error while loading, kind is not defined');
+                        const newMeasurement = {
+                            ...(0, getMeasurementInfoFromFile_1.getMeasurementInfoFromFile)(file, measurement.title || ''),
+                            meta: measurement.meta,
+                            data: normalizeSpectra(measurement.spectra),
+                        };
+                        Object.assign(newMeasurement.info, measurement.info);
+                        newMeasurements[kind]?.entries.push(newMeasurement);
+                    }
+                }
+            }
+            catch (error) {
+                // send error to UI ?
+                if (error instanceof Error) {
+                    if (logs) {
+                        logs.push((0, parserLog_1.createLogEntry)({
+                            error,
+                            parser: 'jcamp converter',
+                            relativePath: file.relativePath,
+                            message: 'error parsing jdx or dx file',
+                        }));
+                    }
+                    else {
+                        throw error;
+                    }
+                }
+            }
+        }
+    }
+    return newMeasurements;
+}
+exports.jcampLoader = jcampLoader;
+function normalizeSpectra(spectra) {
+    const data = [];
+    for (const spectrum of spectra) {
+        let variables = spectrum.variables;
+        if (!variables) {
+            variables = {};
+            variables.x = {
+                label: spectrum.xUnits,
+                symbol: 'X',
+                data: spectrum.data.x || spectrum.data.X,
+            };
+            variables.y = {
+                label: spectrum.yUnits,
+                symbol: 'Y',
+                data: spectrum.data.y || spectrum.data.Y,
+            };
+        }
+        else {
+            for (const key in variables) {
+                const variable = variables[key];
+                if (variable.label)
+                    continue;
+                variable.label = variable.name || variable.symbol || key;
+                if (variable.units && !variable.label.includes(variable.units)) {
+                    variable.label += ` [${variable.units}]`;
+                }
+            }
+        }
+        data.push({ variables });
+    }
+    return data;
+}
+//# sourceMappingURL=jcampLoader.js.map

package/lib/app-data/loaders/jcampLoader.js.map

@@ -0,0 +1 @@
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package/lib/app-data/loaders/loadMeasurements.d.ts

@@ -0,0 +1,14 @@
+import type { FileCollection } from 'filelist-utils';
+import { Measurements, Enhancers } from '../index';
+import { MeasurementsLoader } from './utility/measurementLoader';
+import type { ParserLog } from './utility/parserLog';
+export interface LoadOptions {
+    loaders?: MeasurementsLoader[];
+    enhancers?: Partial<Enhancers>;
+    logger?: boolean;
+}
+export declare function loadMeasurements(fileCollection: FileCollection, options?: LoadOptions): Promise<{
+    measurements: Partial<Measurements>;
+    logs: ParserLog[];
+}>;
+//# sourceMappingURL=loadMeasurements.d.ts.map

package/lib/app-data/loaders/loadMeasurements.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"loadMeasurements.d.ts","sourceRoot":"","sources":["../../../src/app-data/loaders/loadMeasurements.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAGrD,OAAO,EAAE,YAAY,EAAW,SAAS,EAAmB,MAAM,UAAU,CAAC;AAE7E,OAAO,EACL,kBAAkB,EAEnB,MAAM,6BAA6B,CAAC;AACrC,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAErD,MAAM,WAAW,WAAW;IAC1B,OAAO,CAAC,EAAE,kBAAkB,EAAE,CAAC;IAC/B,SAAS,CAAC,EAAE,OAAO,CAAC,SAAS,CAAC,CAAC;IAC/B,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,wBAAsB,gBAAgB,CACpC,cAAc,EAAE,cAAc,EAC9B,OAAO,GAAE,WAAgB;;;GAkB1B"}

package/lib/app-data/loaders/loadMeasurements.js

@@ -0,0 +1,41 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.loadMeasurements = void 0;
+const ml_spectra_processing_1 = require("ml-spectra-processing");
+const index_1 = require("../index");
+const measurementLoader_1 = require("./utility/measurementLoader");
+async function loadMeasurements(fileCollection, options = {}) {
+    const measurements = {};
+    const logs = [];
+    const { loaders = [], enhancers = {}, logger = true } = options;
+    for (const loader of loaders) {
+        // TODO: load in parallel
+        // eslint-disable-next-line no-await-in-loop
+        const loaderData = await loader(fileCollection, logger ? logs : undefined);
+        for (const { entries } of Object.values(loaderData)) {
+            for (const entry of entries) {
+                computeMinMax(entry);
+            }
+        }
+        (0, index_1.enhance)(loaderData, enhancers);
+        (0, measurementLoader_1.mergeMeasurements)(measurements, loaderData);
+    }
+    return { measurements, logs };
+}
+exports.loadMeasurements = loadMeasurements;
+function computeMinMax(measurement) {
+    for (const datum of measurement.data) {
+        for (const variable of Object.values(datum.variables)) {
+            if (variable.data.length === 0) {
+                // TODO: should we accept empty data?
+                return;
+            }
+            if (variable.min === undefined || variable.max === undefined) {
+                const { min, max } = (0, ml_spectra_processing_1.xMinMaxValues)(variable.data);
+                variable.min = min;
+                variable.max = max;
+            }
+        }
+    }
+}
+//# sourceMappingURL=loadMeasurements.js.map

package/lib/app-data/loaders/loadMeasurements.js.map

@@ -0,0 +1 @@
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package/lib/app-data/loaders/proprietary/agilent/cary500Loader.d.ts

@@ -0,0 +1,4 @@
+import type { FileCollection } from 'filelist-utils';
+import { Measurements, ParserLog } from '../../../index';
+export declare function cary500Loader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+//# sourceMappingURL=cary500Loader.d.ts.map

package/lib/app-data/loaders/proprietary/agilent/cary500Loader.d.ts.map

@@ -0,0 +1 @@
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package/lib/app-data/loaders/proprietary/agilent/cary500Loader.js

@@ -0,0 +1,80 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.cary500Loader = void 0;
+const index_1 = require("../../../index");
+async function cary500Loader(fileCollection, logs) {
+    const newMeasurements = {};
+    const entries = [];
+    for (const file of fileCollection) {
+        if (/\.csv$/i.test(file.name)) {
+            try {
+                // TODO: load in parallel
+                // eslint-disable-next-line no-await-in-loop
+                const experiments = await convert(file);
+                for (const experiment of experiments) {
+                    entries.push(experiment);
+                }
+            }
+            catch (error) {
+                if (error instanceof Error) {
+                    if (logs) {
+                        logs.push((0, index_1.createLogEntry)({
+                            kind: 'error',
+                            parser: 'cary500Loader',
+                            message: 'Error parsing cary500 experiment.',
+                            error,
+                            relativePath: file.relativePath,
+                        }));
+                    }
+                    else {
+                        throw error;
+                    }
+                }
+            }
+        }
+    }
+    newMeasurements.uvvis = { entries };
+    return newMeasurements;
+}
+exports.cary500Loader = cary500Loader;
+async function convert(file) {
+    const text = await file.text();
+    // this format allows many experiments in one file
+    const lines = text.split(/\r?\n/).map((line) => line.trim());
+    const titles = lines[0].split(',').map((field) => field.trim());
+    const labelUnits = lines[1].split(',').map((field) => field.trim());
+    let lastDataIndex;
+    for (lastDataIndex = 2; lastDataIndex < lines.length; lastDataIndex++) {
+        if (!lines[lastDataIndex].match(/^[\d,.Ee-]+$/)) {
+            break;
+        }
+    }
+    const data = lines.slice(2, lastDataIndex).map((line) => line.split(','));
+    const meta = lines.slice(lastDataIndex);
+    const nbExperiments = Math.floor(labelUnits.length / 2);
+    const experiments = [];
+    for (let i = 0; i < nbExperiments; i++) {
+        const column = i * 2;
+        const xVariable = {
+            ...labelAndUnits(labelUnits[column]),
+            data: data.map((row) => Number(row[column])),
+        };
+        const yVariable = {
+            ...labelAndUnits(labelUnits[column + 1]),
+            data: data.map((row) => Number(row[column + 1])),
+        };
+        experiments.push({
+            ...(0, index_1.getMeasurementInfoFromFile)(file, titles[column]),
+            meta: JSON.parse(JSON.stringify(meta)),
+            data: [{ variables: { x: xVariable, y: yVariable } }],
+        });
+    }
+    return experiments;
+}
+function labelAndUnits(labelUnits) {
+    const groups = labelUnits.match(/(?<label>.*) \((?<units>.*)\)/)?.groups;
+    return groups
+        ? { label: groups.label, units: groups.units }
+        : { label: labelUnits, units: '' };
+}
+//# sourceMappingURL=cary500Loader.js.map

package/lib/app-data/loaders/proprietary/agilent/cary500Loader.js.map

@@ -0,0 +1 @@
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package/lib/app-data/loaders/spcLoader.d.ts

@@ -0,0 +1,11 @@
+import type { FileCollection } from 'filelist-utils';
+import type { Measurements } from '../index';
+import { ParserLog } from './utility/parserLog';
+/**
+ *
+ * @param fileCollection - the dragged file/files
+ * @param logger - whether to log to console or not
+ * @returns - new measurements object to be merged
+ */
+export declare function spcLoader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+//# sourceMappingURL=spcLoader.d.ts.map

package/lib/app-data/loaders/spcLoader.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"spcLoader.d.ts","sourceRoot":"","sources":["../../../src/app-data/loaders/spcLoader.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAIrD,OAAO,KAAK,EAAmB,YAAY,EAAmB,MAAM,UAAU,CAAC;AAG/E,OAAO,EAAE,SAAS,EAAkB,MAAM,qBAAqB,CAAC;AAEhE;;;;;GAKG;AACH,wBAAsB,SAAS,CAC7B,cAAc,EAAE,cAAc,EAC9B,IAAI,CAAC,EAAE,SAAS,EAAE,GACjB,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAsChC"}

package/lib/app-data/loaders/spcLoader.js

@@ -0,0 +1,50 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.spcLoader = void 0;
+const spc_parser_1 = require("spc-parser");
+const index_1 = require("../../components/index");
+const getMeasurementInfoFromFile_1 = require("./utility/getMeasurementInfoFromFile");
+const parserLog_1 = require("./utility/parserLog");
+/**
+ *
+ * @param fileCollection - the dragged file/files
+ * @param logger - whether to log to console or not
+ * @returns - new measurements object to be merged
+ */
+async function spcLoader(fileCollection, logs) {
+    const measurements = {};
+    for (const file of fileCollection) {
+        if (/\.spc$/i.test(file.name)) {
+            try {
+                // TODO: load in parallel
+                // eslint-disable-next-line no-await-in-loop
+                const parsed = (0, spc_parser_1.parse)(await file.arrayBuffer());
+                const spectraType = (0, spc_parser_1.guessSpectraType)(parsed.meta);
+                if (!measurements[spectraType]) {
+                    measurements[spectraType] = { entries: [] };
+                }
+                (0, index_1.assert)(measurements[spectraType], 'Error while loading, kind is not defined');
+                measurements[spectraType]?.entries.push({
+                    meta: parsed.meta,
+                    ...(0, getMeasurementInfoFromFile_1.getMeasurementInfoFromFile)(file, parsed.meta.memo),
+                    data: parsed.spectra,
+                });
+            }
+            catch (error) {
+                if (error instanceof Error && logs) {
+                    logs.push((0, parserLog_1.createLogEntry)({
+                        parser: 'spc-parser',
+                        relativePath: file.relativePath,
+                        error,
+                    }));
+                }
+                else {
+                    throw error;
+                }
+            }
+        }
+    }
+    return measurements;
+}
+exports.spcLoader = spcLoader;
+//# sourceMappingURL=spcLoader.js.map

package/lib/app-data/loaders/spcLoader.js.map

@@ -0,0 +1 @@
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package/lib/app-data/loaders/utility/getMeasurementInfoFromFile.d.ts

@@ -0,0 +1,19 @@
+import type { FileCollectionItem } from 'filelist-utils';
+/**
+ * creates a template for the MeasurementBase (part)
+ * generated from just the file metadata only and id
+ * @param obj - file as collection item.
+ */
+export declare function getMeasurementInfoFromFile({ name, relativePath, lastModified, size }: FileCollectionItem, title: string): {
+    id: string;
+    info: {
+        title: string;
+        file: {
+            name: string;
+            path: string;
+            lastModified: number | undefined;
+            size: number | undefined;
+        };
+    };
+};
+//# sourceMappingURL=getMeasurementInfoFromFile.d.ts.map

package/lib/app-data/loaders/utility/getMeasurementInfoFromFile.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"getMeasurementInfoFromFile.d.ts","sourceRoot":"","sources":["../../../../src/app-data/loaders/utility/getMeasurementInfoFromFile.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,gBAAgB,CAAC;AAEzD;;;;GAIG;AACH,wBAAgB,0BAA0B,CACxC,EAAE,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,IAAI,EAAE,EAAE,kBAAkB,EAC9D,KAAK,EAAE,MAAM;;;;;;;;;;;EASd"}

package/lib/app-data/loaders/utility/getMeasurementInfoFromFile.js

@@ -0,0 +1,20 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getMeasurementInfoFromFile = void 0;
+const uuid_1 = require("@lukeed/uuid");
+/**
+ * creates a template for the MeasurementBase (part)
+ * generated from just the file metadata only and id
+ * @param obj - file as collection item.
+ */
+function getMeasurementInfoFromFile({ name, relativePath, lastModified, size }, title) {
+    return {
+        id: (0, uuid_1.v4)(),
+        info: {
+            title,
+            file: { name, path: relativePath, lastModified, size },
+        },
+    };
+}
+exports.getMeasurementInfoFromFile = getMeasurementInfoFromFile;
+//# sourceMappingURL=getMeasurementInfoFromFile.js.map

package/lib/app-data/loaders/utility/getMeasurementInfoFromFile.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"getMeasurementInfoFromFile.js","sourceRoot":"","sources":["../../../../src/app-data/loaders/utility/getMeasurementInfoFromFile.ts"],"names":[],"mappings":";;;AAAA,uCAAkC;AAGlC;;;;GAIG;AACH,SAAgB,0BAA0B,CACxC,EAAE,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,IAAI,EAAsB,EAC9D,KAAa;IAEb,OAAO;QACL,EAAE,EAAE,IAAA,SAAE,GAAE;QACR,IAAI,EAAE;YACJ,KAAK;YACL,IAAI,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,IAAI,EAAE;SACvD;KACF,CAAC;AACJ,CAAC;AAXD,gEAWC"}

package/lib/app-data/loaders/utility/index.d.ts

@@ -0,0 +1,4 @@
+export * from './getMeasurementInfoFromFile';
+export * from './measurementLoader';
+export * from './parserLog';
+//# sourceMappingURL=index.d.ts.map

package/lib/app-data/loaders/utility/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/app-data/loaders/utility/index.ts"],"names":[],"mappings":"AAAA,cAAc,8BAA8B,CAAC;AAC7C,cAAc,qBAAqB,CAAC;AACpC,cAAc,aAAa,CAAC"}

package/lib/app-data/loaders/utility/index.js

@@ -0,0 +1,20 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./getMeasurementInfoFromFile"), exports);
+__exportStar(require("./measurementLoader"), exports);
+__exportStar(require("./parserLog"), exports);
+//# sourceMappingURL=index.js.map

package/lib/app-data/loaders/utility/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/app-data/loaders/utility/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,+DAA6C;AAC7C,sDAAoC;AACpC,8CAA4B"}

package/lib/app-data/loaders/utility/measurementLoader.d.ts

@@ -0,0 +1,6 @@
+import type { FileCollection } from 'filelist-utils';
+import type { Measurements } from '../../index';
+import type { ParserLog } from './parserLog';
+export type MeasurementsLoader = (fileCollection: FileCollection, logs?: ParserLog[]) => Promise<Partial<Measurements>>;
+export declare function mergeMeasurements(measurements: Partial<Measurements>, newMeasurements: Partial<Measurements>): void;
+//# sourceMappingURL=measurementLoader.d.ts.map

package/lib/app-data/loaders/utility/measurementLoader.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"measurementLoader.d.ts","sourceRoot":"","sources":["../../../../src/app-data/loaders/utility/measurementLoader.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAGrD,OAAO,KAAK,EAAmB,YAAY,EAAE,MAAM,aAAa,CAAC;AAEjE,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C,MAAM,MAAM,kBAAkB,GAAG,CAC/B,cAAc,EAAE,cAAc,EAC9B,IAAI,CAAC,EAAE,SAAS,EAAE,KACf,OAAO,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC;AAEpC,wBAAgB,iBAAiB,CAC/B,YAAY,EAAE,OAAO,CAAC,YAAY,CAAC,EACnC,eAAe,EAAE,OAAO,CAAC,YAAY,CAAC,QAYvC"}

package/lib/app-data/loaders/utility/measurementLoader.js

@@ -0,0 +1,18 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.mergeMeasurements = void 0;
+const index_1 = require("../../../components/index");
+function mergeMeasurements(measurements, newMeasurements) {
+    //fixes for putting type "string" to key
+    let kind;
+    for (kind in newMeasurements) {
+        if (!measurements[kind]) {
+            measurements[kind] = { entries: [] };
+        }
+        (0, index_1.assert)(measurements[kind], 'Error while loading, kind is not defined');
+        const entries = newMeasurements[kind]?.entries || [];
+        measurements[kind]?.entries.push(...entries);
+    }
+}
+exports.mergeMeasurements = mergeMeasurements;
+//# sourceMappingURL=measurementLoader.js.map

package/lib/app-data/loaders/utility/measurementLoader.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"measurementLoader.js","sourceRoot":"","sources":["../../../../src/app-data/loaders/utility/measurementLoader.ts"],"names":[],"mappings":";;;AAEA,qDAAmD;AAUnD,SAAgB,iBAAiB,CAC/B,YAAmC,EACnC,eAAsC;IAEtC,wCAAwC;IACxC,IAAI,IAAkC,CAAC;IACvC,KAAK,IAAI,IAAI,eAAe,EAAE,CAAC;QAC7B,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC;YACxB,YAAY,CAAC,IAAI,CAAC,GAAG,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC;QACvC,CAAC;QACD,IAAA,cAAM,EAAC,YAAY,CAAC,IAAI,CAAC,EAAE,0CAA0C,CAAC,CAAC;QACvE,MAAM,OAAO,GAAsB,eAAe,CAAC,IAAI,CAAC,EAAE,OAAO,IAAI,EAAE,CAAC;QACxE,YAAY,CAAC,IAAI,CAAC,EAAE,OAAO,CAAC,IAAI,CAAC,GAAG,OAAO,CAAC,CAAC;IAC/C,CAAC;AACH,CAAC;AAdD,8CAcC"}

package/lib/app-data/loaders/utility/parserLog.d.ts

@@ -0,0 +1,10 @@
+export interface ParserLog {
+    kind: 'error' | 'warn' | 'info' | 'debug' | 'summary';
+    parser: string;
+    message: string;
+    branch?: string;
+    relativePath?: string;
+    error?: Error;
+}
+export declare function createLogEntry(info: Partial<ParserLog>): ParserLog;
+//# sourceMappingURL=parserLog.d.ts.map

package/lib/app-data/loaders/utility/parserLog.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"parserLog.d.ts","sourceRoot":"","sources":["../../../../src/app-data/loaders/utility/parserLog.ts"],"names":[],"mappings":"AAAA,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,OAAO,GAAG,MAAM,GAAG,MAAM,GAAG,OAAO,GAAG,SAAS,CAAC;IAEtD,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAEhB,MAAM,CAAC,EAAE,MAAM,CAAC;IAEhB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,KAAK,CAAC,EAAE,KAAK,CAAC;CACf;AAED,wBAAgB,cAAc,CAAC,IAAI,EAAE,OAAO,CAAC,SAAS,CAAC,GAAG,SAAS,CA0BlE"}

package/lib/app-data/loaders/utility/parserLog.js

@@ -0,0 +1,23 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.createLogEntry = void 0;
+function createLogEntry(info) {
+    const { parser = 'biologic-converter', branch, kind = 'error', message = 'Error parsing biologic experiment.', error, relativePath, } = info;
+    const log = {
+        parser,
+        kind,
+        message,
+    };
+    if (error) {
+        log.error = error;
+    }
+    if (relativePath) {
+        log.relativePath = relativePath;
+    }
+    if (branch) {
+        log.branch = branch;
+    }
+    return log;
+}
+exports.createLogEntry = createLogEntry;
+//# sourceMappingURL=parserLog.js.map

package/lib/app-data/loaders/utility/parserLog.js.map

@@ -0,0 +1 @@
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package/lib/app-data/loaders/wdfLoader.d.ts

@@ -0,0 +1,11 @@
+import type { FileCollection } from 'filelist-utils';
+import type { Measurements } from '../index';
+import { ParserLog } from './utility/parserLog';
+/**
+ *
+ * @param fileCollection - the dragged file/files
+ * @param logger - whether to log to console or not
+ * @returns - new measurements object to be merged
+ */
+export declare function wdfLoader(fileCollection: FileCollection, logs?: ParserLog[]): Promise<Partial<Measurements>>;
+//# sourceMappingURL=wdfLoader.d.ts.map

package/lib/app-data/loaders/wdfLoader.d.ts.map

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