react-native-update 10.34.3 → 10.34.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/harmony/pushy/src/main/cpp/HDiffPatch/CHANGELOG.md +34 -172
- package/harmony/pushy/src/main/cpp/HDiffPatch/LICENSE +4 -4
- package/harmony/pushy/src/main/cpp/HDiffPatch/Makefile +63 -379
- package/harmony/pushy/src/main/cpp/HDiffPatch/README.md +170 -415
- package/harmony/pushy/src/main/cpp/HDiffPatch/_atosize.h +10 -54
- package/harmony/pushy/src/main/cpp/HDiffPatch/_clock_for_demo.h +1 -13
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/android_ndk_jni_mk/Android.mk +18 -171
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/android_ndk_jni_mk/Application.mk +4 -5
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/android_ndk_jni_mk/hpatch.c +7 -38
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/android_ndk_jni_mk/hpatch.h +4 -15
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/android_ndk_jni_mk/hpatch_jni.c +12 -22
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/android_ndk_jni_mk/java/com/github/sisong/HPatch.java +4 -22
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/codeblocks/HDiffPatch.workspace +8 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/codeblocks/HDiffZ.cbp +219 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/codeblocks/HPatchZ.cbp +156 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/codeblocks/unitTest.cbp +65 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/vc/HDiffPatch.sln +105 -155
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/vc/HDiffZ.vcxproj +236 -363
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/vc/HDiffZ.vcxproj.user +3 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/vc/HPatchZ.vcxproj +317 -347
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/vc/HPatchZ.vcxproj.user +3 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/vc/unitTest.vcxproj +181 -295
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/vc/unitTest.vcxproj.user +3 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/xcode/HDiffPatch.xcworkspace/contents.xcworkspacedata +0 -9
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/xcode/bestParams.xcodeproj/project.pbxproj +14 -53
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/xcode/hdiffz.xcodeproj/project.pbxproj +32 -162
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/xcode/hpatchz.xcodeproj/project.pbxproj +22 -89
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/xcode/lzma.xcodeproj/project.pbxproj +13 -237
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/xcode/testHashClash.xcodeproj/project.pbxproj +2 -2
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/xcode/unitTest.xcodeproj/project.pbxproj +14 -194
- package/harmony/pushy/src/main/cpp/HDiffPatch/builds/xcode/zstd.xcodeproj/project.pbxproj +10 -30
- package/harmony/pushy/src/main/cpp/HDiffPatch/checksum_plugin_demo.h +3 -458
- package/harmony/pushy/src/main/cpp/HDiffPatch/compress_parallel.cpp +71 -106
- package/harmony/pushy/src/main/cpp/HDiffPatch/compress_parallel.h +3 -3
- package/harmony/pushy/src/main/cpp/HDiffPatch/compress_plugin_demo.h +110 -484
- package/harmony/pushy/src/main/cpp/HDiffPatch/decompress_plugin_demo.h +193 -835
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_diff/dir_diff.cpp +50 -99
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_diff/dir_diff.h +4 -18
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_diff/dir_diff_tools.cpp +8 -147
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_diff/dir_diff_tools.h +6 -18
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_diff/dir_manifest.cpp +25 -7
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_diff/file_for_dirDiff.h +113 -5
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/dir_patch.c +97 -163
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/dir_patch.h +39 -49
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/dir_patch_tools.c +15 -15
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/dir_patch_tools.h +2 -18
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/dir_patch_types.h +4 -8
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/new_dir_output.c +57 -72
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/new_dir_output.h +13 -18
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/new_stream.c +1 -1
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/new_stream.h +2 -2
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/ref_stream.c +2 -2
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/ref_stream.h +2 -2
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/res_handle_limit.c +2 -2
- package/harmony/pushy/src/main/cpp/HDiffPatch/dirDiffPatch/dir_patch/res_handle_limit.h +1 -1
- package/harmony/pushy/src/main/cpp/HDiffPatch/file_for_patch.c +100 -311
- package/harmony/pushy/src/main/cpp/HDiffPatch/file_for_patch.h +72 -53
- package/harmony/pushy/src/main/cpp/HDiffPatch/hdiffz.cpp +487 -888
- package/harmony/pushy/src/main/cpp/HDiffPatch/hpatch_dir_listener.h +28 -45
- package/harmony/pushy/src/main/cpp/HDiffPatch/hpatchz.c +247 -812
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/diff.cpp +544 -1265
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/diff.h +38 -123
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/diff_types.h +0 -115
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/bytes_rle.cpp +102 -272
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/bytes_rle.h +12 -22
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/compress_detect.cpp +4 -18
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/compress_detect.h +5 -7
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/{divsufsort.cpp → divsufsort.c} +8 -5
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/divsufsort.c.inc.h +164 -91
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/divsufsort.h +102 -5
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/divsufsort64.c +13 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/divsufsort64.h +97 -1
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/divsufsort_private.h +44 -23
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/sssort.c.inc.h +89 -54
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/trsort.c.inc.h +55 -48
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/libdivsufsort/utils.c.inc.h +381 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/limit_mem_diff/adler_roll.c +47 -110
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/limit_mem_diff/adler_roll.h +4 -11
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/limit_mem_diff/bloom_filter.h +26 -53
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/limit_mem_diff/covers.h +25 -103
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/limit_mem_diff/digest_matcher.cpp +130 -271
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/limit_mem_diff/digest_matcher.h +7 -17
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/limit_mem_diff/stream_serialize.cpp +37 -628
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/limit_mem_diff/stream_serialize.h +43 -203
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/mem_buf.h +10 -14
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/pack_uint.h +7 -22
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/suffix_string.cpp +46 -132
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HDiff/private_diff/suffix_string.h +9 -48
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HPatch/patch.c +299 -650
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HPatch/patch.h +82 -120
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HPatch/patch_private.h +7 -87
- package/harmony/pushy/src/main/cpp/HDiffPatch/libHDiffPatch/HPatch/patch_types.h +9 -119
- package/harmony/pushy/src/main/cpp/HDiffPatch/libParallel/parallel_channel.cpp +6 -2
- package/harmony/pushy/src/main/cpp/HDiffPatch/libParallel/parallel_channel.h +15 -192
- package/harmony/pushy/src/main/cpp/HDiffPatch/libParallel/parallel_import.cpp +367 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/libParallel/parallel_import.h +56 -31
- package/harmony/pushy/src/main/cpp/HDiffPatch/test/_private_searchBestParams.cpp +1 -1
- package/harmony/pushy/src/main/cpp/HDiffPatch/test/hpatchz_test.cpp +1 -0
- package/harmony/pushy/src/main/cpp/HDiffPatch/test/testHashClash.cpp +31 -225
- package/harmony/pushy/src/main/cpp/HDiffPatch/test/unit_test.cpp +94 -566
- package/harmony/pushy/src/main/cpp/lzma/Asm/x86/7zAsm.asm +28 -222
- package/harmony/pushy/src/main/cpp/lzma/Asm/x86/7zCrcOpt.asm +117 -228
- package/harmony/pushy/src/main/cpp/lzma/Asm/x86/AesOpt.asm +173 -678
- package/harmony/pushy/src/main/cpp/lzma/Asm/x86/LzmaDecOpt.asm +22 -103
- package/harmony/pushy/src/main/cpp/lzma/Asm/x86/XzCrc64Opt.asm +167 -485
- package/harmony/pushy/src/main/cpp/lzma/C/7z.h +6 -8
- package/harmony/pushy/src/main/cpp/lzma/C/7zAlloc.c +30 -39
- package/harmony/pushy/src/main/cpp/lzma/C/7zAlloc.h +3 -3
- package/harmony/pushy/src/main/cpp/lzma/C/7zArcIn.c +217 -232
- package/harmony/pushy/src/main/cpp/lzma/C/7zBuf.h +3 -3
- package/harmony/pushy/src/main/cpp/lzma/C/7zCrc.c +68 -404
- package/harmony/pushy/src/main/cpp/lzma/C/7zCrc.h +6 -9
- package/harmony/pushy/src/main/cpp/lzma/C/7zCrcOpt.c +79 -163
- package/harmony/pushy/src/main/cpp/lzma/C/7zDec.c +78 -160
- package/harmony/pushy/src/main/cpp/lzma/C/7zFile.c +58 -215
- package/harmony/pushy/src/main/cpp/lzma/C/7zFile.h +6 -15
- package/harmony/pushy/src/main/cpp/lzma/C/7zStream.c +23 -46
- package/harmony/pushy/src/main/cpp/lzma/C/7zTypes.h +89 -311
- package/harmony/pushy/src/main/cpp/lzma/C/7zVersion.h +5 -5
- package/harmony/pushy/src/main/cpp/lzma/C/Aes.c +68 -191
- package/harmony/pushy/src/main/cpp/lzma/C/Aes.h +8 -30
- package/harmony/pushy/src/main/cpp/lzma/C/AesOpt.c +108 -926
- package/harmony/pushy/src/main/cpp/lzma/C/Alloc.c +96 -246
- package/harmony/pushy/src/main/cpp/lzma/C/Alloc.h +8 -33
- package/harmony/pushy/src/main/cpp/lzma/C/Bcj2.c +144 -177
- package/harmony/pushy/src/main/cpp/lzma/C/Bcj2.h +42 -228
- package/harmony/pushy/src/main/cpp/lzma/C/Bcj2Enc.c +182 -377
- package/harmony/pushy/src/main/cpp/lzma/C/Bra.c +143 -622
- package/harmony/pushy/src/main/cpp/lzma/C/Bra.h +40 -81
- package/harmony/pushy/src/main/cpp/lzma/C/Bra86.c +58 -163
- package/harmony/pushy/src/main/cpp/lzma/C/BraIA64.c +48 -9
- package/harmony/pushy/src/main/cpp/lzma/C/Compiler.h +15 -228
- package/harmony/pushy/src/main/cpp/lzma/C/CpuArch.c +133 -885
- package/harmony/pushy/src/main/cpp/lzma/C/CpuArch.h +78 -428
- package/harmony/pushy/src/main/cpp/lzma/C/Delta.c +31 -136
- package/harmony/pushy/src/main/cpp/lzma/C/Delta.h +3 -3
- package/harmony/pushy/src/main/cpp/lzma/C/DllSecur.c +62 -53
- package/harmony/pushy/src/main/cpp/lzma/C/DllSecur.h +5 -5
- package/harmony/pushy/src/main/cpp/lzma/C/LzFind.c +495 -1114
- package/harmony/pushy/src/main/cpp/lzma/C/LzFind.h +25 -64
- package/harmony/pushy/src/main/cpp/lzma/C/LzFindMt.c +400 -969
- package/harmony/pushy/src/main/cpp/lzma/C/LzFindMt.h +24 -37
- package/harmony/pushy/src/main/cpp/lzma/C/LzHash.h +48 -25
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma2Dec.c +7 -12
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma2Dec.h +7 -8
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma2DecMt.c +83 -96
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma2DecMt.h +9 -11
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma2Enc.c +92 -96
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma2Enc.h +9 -12
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma86.h +3 -3
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma86Dec.c +4 -3
- package/harmony/pushy/src/main/cpp/lzma/C/Lzma86Enc.c +6 -3
- package/harmony/pushy/src/main/cpp/lzma/C/LzmaDec.c +206 -384
- package/harmony/pushy/src/main/cpp/lzma/C/LzmaDec.h +8 -11
- package/harmony/pushy/src/main/cpp/lzma/C/LzmaEnc.c +315 -489
- package/harmony/pushy/src/main/cpp/lzma/C/LzmaEnc.h +9 -18
- package/harmony/pushy/src/main/cpp/lzma/C/LzmaLib.c +3 -5
- package/harmony/pushy/src/main/cpp/lzma/C/LzmaLib.h +14 -21
- package/harmony/pushy/src/main/cpp/lzma/C/MtCoder.c +87 -90
- package/harmony/pushy/src/main/cpp/lzma/C/MtCoder.h +25 -28
- package/harmony/pushy/src/main/cpp/lzma/C/MtDec.c +88 -74
- package/harmony/pushy/src/main/cpp/lzma/C/MtDec.h +20 -21
- package/harmony/pushy/src/main/cpp/lzma/C/Ppmd.h +34 -118
- package/harmony/pushy/src/main/cpp/lzma/C/Ppmd7.c +293 -712
- package/harmony/pushy/src/main/cpp/lzma/C/Ppmd7.h +70 -109
- package/harmony/pushy/src/main/cpp/lzma/C/Ppmd7Dec.c +116 -237
- package/harmony/pushy/src/main/cpp/lzma/C/Ppmd7Enc.c +95 -245
- package/harmony/pushy/src/main/cpp/lzma/C/Precomp.h +5 -122
- package/harmony/pushy/src/main/cpp/lzma/C/RotateDefs.h +4 -24
- package/harmony/pushy/src/main/cpp/lzma/C/Sha256.c +143 -387
- package/harmony/pushy/src/main/cpp/lzma/C/Sha256.h +7 -67
- package/harmony/pushy/src/main/cpp/lzma/C/Sort.c +114 -241
- package/harmony/pushy/src/main/cpp/lzma/C/Sort.h +7 -4
- package/harmony/pushy/src/main/cpp/lzma/C/Threads.c +14 -731
- package/harmony/pushy/src/main/cpp/lzma/C/Threads.h +14 -204
- package/harmony/pushy/src/main/cpp/lzma/C/ThreadsP.c +396 -0
- package/harmony/pushy/src/main/cpp/lzma/C/ThreadsP.h +31 -0
- package/harmony/pushy/src/main/cpp/lzma/C/Util/7z/7z.dsp +2 -10
- package/harmony/pushy/src/main/cpp/lzma/C/Util/7z/7zMain.c +79 -282
- package/harmony/pushy/src/main/cpp/lzma/C/Util/7z/Precomp.h +7 -10
- package/harmony/pushy/src/main/cpp/lzma/C/Util/7z/makefile +3 -7
- package/harmony/pushy/src/main/cpp/lzma/C/Util/7z/makefile.gcc +75 -32
- package/harmony/pushy/src/main/cpp/lzma/C/Util/Lzma/LzmaUtil.c +56 -111
- package/harmony/pushy/src/main/cpp/lzma/C/Util/Lzma/LzmaUtil.dsp +0 -24
- package/harmony/pushy/src/main/cpp/lzma/C/Util/Lzma/makefile +0 -2
- package/harmony/pushy/src/main/cpp/lzma/C/Util/Lzma/makefile.gcc +41 -18
- package/harmony/pushy/src/main/cpp/lzma/C/Util/LzmaLib/LzmaLib.dsp +2 -30
- package/harmony/pushy/src/main/cpp/lzma/C/Util/LzmaLib/LzmaLibExports.c +6 -7
- package/harmony/pushy/src/main/cpp/lzma/C/Util/LzmaLib/makefile +2 -27
- package/harmony/pushy/src/main/cpp/lzma/C/Util/SfxSetup/Precomp.h +7 -10
- package/harmony/pushy/src/main/cpp/lzma/C/Util/SfxSetup/SfxSetup.c +22 -39
- package/harmony/pushy/src/main/cpp/lzma/C/Util/SfxSetup/makefile +2 -9
- package/harmony/pushy/src/main/cpp/lzma/C/Util/SfxSetup/makefile_con +1 -3
- package/harmony/pushy/src/main/cpp/lzma/C/Xz.c +3 -5
- package/harmony/pushy/src/main/cpp/lzma/C/Xz.h +47 -129
- package/harmony/pushy/src/main/cpp/lzma/C/XzCrc64.c +43 -97
- package/harmony/pushy/src/main/cpp/lzma/C/XzCrc64.h +8 -8
- package/harmony/pushy/src/main/cpp/lzma/C/XzCrc64Opt.c +36 -228
- package/harmony/pushy/src/main/cpp/lzma/C/XzDec.c +295 -405
- package/harmony/pushy/src/main/cpp/lzma/C/XzEnc.c +139 -194
- package/harmony/pushy/src/main/cpp/lzma/C/XzEnc.h +11 -15
- package/harmony/pushy/src/main/cpp/lzma/C/XzIn.c +134 -200
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/7zip.mak +6 -6
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Aes.mak +1 -4
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Archive/7z/7zCompressionMode.h +13 -29
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Archive/7z/7zDecode.cpp +90 -120
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Archive/7z/7zDecode.h +6 -9
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Archive/7z/7zEncode.cpp +140 -183
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Archive/7z/7zEncode.h +20 -23
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Archive/7z/7zExtract.cpp +57 -78
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Archive/7z/7zFolderInStream.cpp +44 -169
- package/harmony/pushy/src/main/cpp/lzma/CPP/7zip/Archive/7z/7zFolderInStream.h +17 -57
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typedef struct mt_data_t{
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CHLocker locker;
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/*- Private Functions -*/
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sort_typeBstar(const sauchar_t *T,
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sort_typeBstar(const sauchar_t *T, saidx_t *SA,
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saidx_t *bucket_A, saidx_t *bucket_B,
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saidx_t n
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saidx_t n) {
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saidx_t *PAb, *ISAb, *buf;
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#ifdef _OPENMP
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saidx_t *curbuf;
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saidx_t l;
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#endif
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saidx_t i, j, k, t, m, bufsize;
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|
saint_t c0, c1;
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#ifdef _OPENMP
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saint_t d0, d1;
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int tmp;
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#endif
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for(i = 0; i < BUCKET_A_SIZE; ++i) { bucket_A[i] = 0; }
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@@ -139,42 +100,47 @@ note:
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SA[--BUCKET_BSTAR(c0, c1)] = m - 1;
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/* Sort the type B* substrings using sssort. */
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#
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-
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-
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mt_data_t mt_data;
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mt_data.T=T;
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mt_data.SA=SA;
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mt_data.n=n;
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mt_data.m=m;
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std::vector<std::thread> threads(threadCount);
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threads[ti]=std::thread(_sssort_thread,&c0,&c1,&j,buf,&mt_data);
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}
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_sssort_thread(&c0,&c1,&j,buf,&mt_data);
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for (int ti=0;ti<threadCount;++ti)
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threads[ti].join();
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}else
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#endif
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#ifdef _OPENMP
|
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tmp = omp_get_max_threads();
|
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buf = SA + m, bufsize = (n - (2 * m)) / tmp;
|
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c0 = ALPHABET_SIZE - 2, c1 = ALPHABET_SIZE - 1, j = m;
|
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#pragma omp parallel default(shared) private(curbuf, k, l, d0, d1, tmp)
|
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{
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tmp = omp_get_thread_num();
|
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curbuf = buf + tmp * bufsize;
|
|
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k = 0;
|
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for(;;) {
|
|
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|
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#pragma omp critical(sssort_lock)
|
|
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|
+
{
|
|
115
|
+
if(0 < (l = j)) {
|
|
116
|
+
d0 = c0, d1 = c1;
|
|
117
|
+
do {
|
|
118
|
+
k = BUCKET_BSTAR(d0, d1);
|
|
119
|
+
if(--d1 <= d0) {
|
|
120
|
+
d1 = ALPHABET_SIZE - 1;
|
|
121
|
+
if(--d0 < 0) { break; }
|
|
122
|
+
}
|
|
123
|
+
} while(((l - k) <= 1) && (0 < (l = k)));
|
|
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|
+
c0 = d0, c1 = d1, j = k;
|
|
125
|
+
}
|
|
126
|
+
}
|
|
127
|
+
if(l == 0) { break; }
|
|
128
|
+
sssort(T, PAb, SA + k, SA + l,
|
|
129
|
+
curbuf, bufsize, 2, n, *(SA + k) == (m - 1));
|
|
130
|
+
}
|
|
131
|
+
}
|
|
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|
+
#else
|
|
133
|
+
buf = SA + m, bufsize = n - (2 * m);
|
|
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|
+
for(c0 = ALPHABET_SIZE - 2, j = m; 0 < j; --c0) {
|
|
135
|
+
for(c1 = ALPHABET_SIZE - 1; c0 < c1; j = i, --c1) {
|
|
136
|
+
i = BUCKET_BSTAR(c0, c1);
|
|
137
|
+
if(1 < (j - i)) {
|
|
138
|
+
sssort(T, PAb, SA + i, SA + j,
|
|
139
|
+
buf, bufsize, 2, n, *(SA + i) == (m - 1));
|
|
176
140
|
}
|
|
141
|
+
}
|
|
177
142
|
}
|
|
143
|
+
#endif
|
|
178
144
|
|
|
179
145
|
/* Compute ranks of type B* substrings. */
|
|
180
146
|
for(i = m - 1; 0 <= i; --i) {
|
|
@@ -226,10 +192,10 @@ note:
|
|
|
226
192
|
/* Constructs the suffix array by using the sorted order of type B* suffixes. */
|
|
227
193
|
static
|
|
228
194
|
void
|
|
229
|
-
construct_SA(const sauchar_t *T,
|
|
195
|
+
construct_SA(const sauchar_t *T, saidx_t *SA,
|
|
230
196
|
saidx_t *bucket_A, saidx_t *bucket_B,
|
|
231
197
|
saidx_t n, saidx_t m) {
|
|
232
|
-
|
|
198
|
+
saidx_t *i, *j, *k;
|
|
233
199
|
saidx_t s;
|
|
234
200
|
saint_t c0, c1, c2;
|
|
235
201
|
|
|
@@ -286,12 +252,84 @@ construct_SA(const sauchar_t *T, sastore_t* SA,
|
|
|
286
252
|
}
|
|
287
253
|
}
|
|
288
254
|
|
|
255
|
+
/* Constructs the burrows-wheeler transformed string directly
|
|
256
|
+
by using the sorted order of type B* suffixes. */
|
|
257
|
+
static
|
|
258
|
+
saidx_t
|
|
259
|
+
construct_BWT(const sauchar_t *T, saidx_t *SA,
|
|
260
|
+
saidx_t *bucket_A, saidx_t *bucket_B,
|
|
261
|
+
saidx_t n, saidx_t m) {
|
|
262
|
+
saidx_t *i, *j, *k, *orig;
|
|
263
|
+
saidx_t s;
|
|
264
|
+
saint_t c0, c1, c2;
|
|
265
|
+
|
|
266
|
+
if(0 < m) {
|
|
267
|
+
/* Construct the sorted order of type B suffixes by using
|
|
268
|
+
the sorted order of type B* suffixes. */
|
|
269
|
+
for(c1 = ALPHABET_SIZE - 2; 0 <= c1; --c1) {
|
|
270
|
+
/* Scan the suffix array from right to left. */
|
|
271
|
+
for(i = SA + BUCKET_BSTAR(c1, c1 + 1),
|
|
272
|
+
j = SA + BUCKET_A(c1 + 1) - 1, k = NULL, c2 = -1;
|
|
273
|
+
i <= j;
|
|
274
|
+
--j) {
|
|
275
|
+
if(0 < (s = *j)) {
|
|
276
|
+
assert(T[s] == c1);
|
|
277
|
+
assert(((s + 1) < n) && (T[s] <= T[s + 1]));
|
|
278
|
+
assert(T[s - 1] <= T[s]);
|
|
279
|
+
c0 = T[--s];
|
|
280
|
+
*j = ~((saidx_t)c0);
|
|
281
|
+
if((0 < s) && (T[s - 1] > c0)) { s = ~s; }
|
|
282
|
+
if(c0 != c2) {
|
|
283
|
+
if(0 <= c2) { BUCKET_B(c2, c1) = (saidx_t)(k - SA); }
|
|
284
|
+
k = SA + BUCKET_B(c2 = c0, c1);
|
|
285
|
+
}
|
|
286
|
+
assert(k < j);
|
|
287
|
+
*k-- = s;
|
|
288
|
+
} else if(s != 0) {
|
|
289
|
+
*j = ~s;
|
|
290
|
+
#ifndef NDEBUG
|
|
291
|
+
} else {
|
|
292
|
+
assert(T[s] == c1);
|
|
293
|
+
#endif
|
|
294
|
+
}
|
|
295
|
+
}
|
|
296
|
+
}
|
|
297
|
+
}
|
|
298
|
+
|
|
299
|
+
/* Construct the BWTed string by using
|
|
300
|
+
the sorted order of type B suffixes. */
|
|
301
|
+
k = SA + BUCKET_A(c2 = T[n - 1]);
|
|
302
|
+
*k++ = (T[n - 2] < c2) ? ~((saidx_t)T[n - 2]) : (n - 1);
|
|
303
|
+
/* Scan the suffix array from left to right. */
|
|
304
|
+
for(i = SA, j = SA + n, orig = SA; i < j; ++i) {
|
|
305
|
+
if(0 < (s = *i)) {
|
|
306
|
+
assert(T[s - 1] >= T[s]);
|
|
307
|
+
c0 = T[--s];
|
|
308
|
+
*i = c0;
|
|
309
|
+
if((0 < s) && (T[s - 1] < c0)) { s = ~((saidx_t)T[s - 1]); }
|
|
310
|
+
if(c0 != c2) {
|
|
311
|
+
BUCKET_A(c2) = (saidx_t)(k - SA);
|
|
312
|
+
k = SA + BUCKET_A(c2 = c0);
|
|
313
|
+
}
|
|
314
|
+
assert(i < k);
|
|
315
|
+
*k++ = s;
|
|
316
|
+
} else if(s != 0) {
|
|
317
|
+
*i = ~s;
|
|
318
|
+
} else {
|
|
319
|
+
orig = i;
|
|
320
|
+
}
|
|
321
|
+
}
|
|
322
|
+
|
|
323
|
+
return (saidx_t)(orig - SA);
|
|
324
|
+
}
|
|
325
|
+
|
|
326
|
+
|
|
289
327
|
/*---------------------------------------------------------------------------*/
|
|
290
328
|
|
|
291
329
|
/*- Function -*/
|
|
292
330
|
|
|
293
331
|
saint_t
|
|
294
|
-
divsufsort(const sauchar_t *T,
|
|
332
|
+
divsufsort(const sauchar_t *T, saidx_t *SA, saidx_t n) {
|
|
295
333
|
saidx_t *bucket_A, *bucket_B;
|
|
296
334
|
saidx_t m;
|
|
297
335
|
saint_t err = 0;
|
|
@@ -307,7 +345,7 @@ divsufsort(const sauchar_t *T, sastore_t* SA, saidx_t n,int threadNum) {
|
|
|
307
345
|
|
|
308
346
|
/* Suffixsort. */
|
|
309
347
|
if((bucket_A != NULL) && (bucket_B != NULL)) {
|
|
310
|
-
m = sort_typeBstar(T, SA, bucket_A, bucket_B, n
|
|
348
|
+
m = sort_typeBstar(T, SA, bucket_A, bucket_B, n);
|
|
311
349
|
construct_SA(T, SA, bucket_A, bucket_B, n, m);
|
|
312
350
|
} else {
|
|
313
351
|
err = -2;
|
|
@@ -319,6 +357,41 @@ divsufsort(const sauchar_t *T, sastore_t* SA, saidx_t n,int threadNum) {
|
|
|
319
357
|
return err;
|
|
320
358
|
}
|
|
321
359
|
|
|
360
|
+
saidx_t
|
|
361
|
+
divbwt(const sauchar_t *T, sauchar_t *U, saidx_t *A, saidx_t n) {
|
|
362
|
+
saidx_t *B;
|
|
363
|
+
saidx_t *bucket_A, *bucket_B;
|
|
364
|
+
saidx_t m, pidx, i;
|
|
365
|
+
|
|
366
|
+
/* Check arguments. */
|
|
367
|
+
if((T == NULL) || (U == NULL) || (n < 0)) { return -1; }
|
|
368
|
+
else if(n <= 1) { if(n == 1) { U[0] = T[0]; } return n; }
|
|
369
|
+
|
|
370
|
+
if((B = A) == NULL) { B = (saidx_t *)malloc((size_t)(n + 1) * sizeof(saidx_t)); }
|
|
371
|
+
bucket_A = (saidx_t *)malloc(BUCKET_A_SIZE * sizeof(saidx_t));
|
|
372
|
+
bucket_B = (saidx_t *)malloc(BUCKET_B_SIZE * sizeof(saidx_t));
|
|
373
|
+
|
|
374
|
+
/* Burrows-Wheeler Transform. */
|
|
375
|
+
if((B != NULL) && (bucket_A != NULL) && (bucket_B != NULL)) {
|
|
376
|
+
m = sort_typeBstar(T, B, bucket_A, bucket_B, n);
|
|
377
|
+
pidx = construct_BWT(T, B, bucket_A, bucket_B, n, m);
|
|
378
|
+
|
|
379
|
+
/* Copy to output string. */
|
|
380
|
+
U[0] = T[n - 1];
|
|
381
|
+
for(i = 0; i < pidx; ++i) { U[i + 1] = (sauchar_t)B[i]; }
|
|
382
|
+
for(i += 1; i < n; ++i) { U[i] = (sauchar_t)B[i]; }
|
|
383
|
+
pidx += 1;
|
|
384
|
+
} else {
|
|
385
|
+
pidx = -2;
|
|
386
|
+
}
|
|
387
|
+
|
|
388
|
+
free(bucket_B);
|
|
389
|
+
free(bucket_A);
|
|
390
|
+
if(A == NULL) { free(B); }
|
|
391
|
+
|
|
392
|
+
return pidx;
|
|
393
|
+
}
|
|
394
|
+
|
|
322
395
|
const char *
|
|
323
396
|
divsufsort_version(void) {
|
|
324
397
|
return PROJECT_VERSION_FULL;
|
|
@@ -64,10 +64,17 @@ typedef uint8_t sauchar_t;
|
|
|
64
64
|
#define SAINT_T
|
|
65
65
|
typedef int32_t saint_t;
|
|
66
66
|
#endif /* SAINT_T */
|
|
67
|
-
#ifndef
|
|
68
|
-
#define
|
|
69
|
-
typedef int32_t
|
|
70
|
-
#endif /*
|
|
67
|
+
#ifndef SAIDX_T
|
|
68
|
+
#define SAIDX_T
|
|
69
|
+
typedef int32_t saidx_t;
|
|
70
|
+
#endif /* SAIDX_T */
|
|
71
|
+
#ifndef PRIdSAINT_T
|
|
72
|
+
#define PRIdSAINT_T PRId32
|
|
73
|
+
#endif /* PRIdSAINT_T */
|
|
74
|
+
#ifndef PRIdSAIDX_T
|
|
75
|
+
#define PRIdSAIDX_T PRId32
|
|
76
|
+
#endif /* PRIdSAIDX_T */
|
|
77
|
+
|
|
71
78
|
|
|
72
79
|
/*- Prototypes -*/
|
|
73
80
|
|
|
@@ -80,7 +87,19 @@ typedef int32_t saidx32_t;
|
|
|
80
87
|
*/
|
|
81
88
|
DIVSUFSORT_API
|
|
82
89
|
saint_t
|
|
83
|
-
divsufsort(const sauchar_t *T,
|
|
90
|
+
divsufsort(const sauchar_t *T, saidx_t *SA, saidx_t n);
|
|
91
|
+
|
|
92
|
+
/**
|
|
93
|
+
* Constructs the burrows-wheeler transformed string of a given string.
|
|
94
|
+
* @param T[0..n-1] The input string.
|
|
95
|
+
* @param U[0..n-1] The output string. (can be T)
|
|
96
|
+
* @param A[0..n-1] The temporary array. (can be NULL)
|
|
97
|
+
* @param n The length of the given string.
|
|
98
|
+
* @return The primary index if no error occurred, -1 or -2 otherwise.
|
|
99
|
+
*/
|
|
100
|
+
DIVSUFSORT_API
|
|
101
|
+
saidx_t
|
|
102
|
+
divbwt(const sauchar_t *T, sauchar_t *U, saidx_t *A, saidx_t n);
|
|
84
103
|
|
|
85
104
|
/**
|
|
86
105
|
* Returns the version of the divsufsort library.
|
|
@@ -90,6 +109,84 @@ DIVSUFSORT_API
|
|
|
90
109
|
const char *
|
|
91
110
|
divsufsort_version(void);
|
|
92
111
|
|
|
112
|
+
|
|
113
|
+
/**
|
|
114
|
+
* Constructs the burrows-wheeler transformed string of a given string and suffix array.
|
|
115
|
+
* @param T[0..n-1] The input string.
|
|
116
|
+
* @param U[0..n-1] The output string. (can be T)
|
|
117
|
+
* @param SA[0..n-1] The suffix array. (can be NULL)
|
|
118
|
+
* @param n The length of the given string.
|
|
119
|
+
* @param idx The output primary index.
|
|
120
|
+
* @return 0 if no error occurred, -1 or -2 otherwise.
|
|
121
|
+
*/
|
|
122
|
+
DIVSUFSORT_API
|
|
123
|
+
saint_t
|
|
124
|
+
bw_transform(const sauchar_t *T, sauchar_t *U,
|
|
125
|
+
saidx_t *SA /* can NULL */,
|
|
126
|
+
saidx_t n, saidx_t *idx);
|
|
127
|
+
|
|
128
|
+
/**
|
|
129
|
+
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inverse_bw_transform(const sauchar_t *T, sauchar_t *U,
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saidx_t n, saidx_t idx);
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sufcheck(const sauchar_t *T, const saidx_t *SA, saidx_t n, saint_t verbose);
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saidx_t *left);
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sa_simplesearch(const sauchar_t *T, saidx_t Tsize,
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@@ -0,0 +1,13 @@
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#ifdef BUILD_DIVSUFSORT64
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# undef BUILD_DIVSUFSORT64
|
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#endif
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|
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|
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|
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#define lg_table sssort_lg_table
|
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|
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#include "sssort.c.inc.h"
|
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#include "utils.c.inc.h"
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|
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|
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|
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|
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|
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#endif /* PRIdSAINT_T */
|
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|
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#ifndef PRIdSAIDX64_T
|
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|
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|
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|
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#endif /* PRIdSAIDX64_T */
|
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/*- Prototypes -*/
|
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@@ -91,7 +97,19 @@ typedef llong_t saidx64_t;
|
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*/
|
|
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|
DIVSUFSORT_API
|
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|
saint_t
|
|
94
|
-
divsufsort64(const sauchar_t *T, saidx64_t *SA, saidx64_t n
|
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|
+
divsufsort64(const sauchar_t *T, saidx64_t *SA, saidx64_t n);
|
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+
|
|
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|
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/**
|
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* Constructs the burrows-wheeler transformed string of a given string.
|
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|
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|
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* @param U[0..n-1] The output string. (can be T)
|
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|
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* @param n The length of the given string.
|
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|
+
* @return The primary index if no error occurred, -1 or -2 otherwise.
|
|
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|
+
*/
|
|
110
|
+
DIVSUFSORT_API
|
|
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|
+
saidx64_t
|
|
112
|
+
divbwt64(const sauchar_t *T, sauchar_t *U, saidx64_t *A, saidx64_t n);
|
|
95
113
|
|
|
96
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|
/**
|
|
97
115
|
* Returns the version of the divsufsort library.
|
|
@@ -101,6 +119,84 @@ DIVSUFSORT_API
|
|
|
101
119
|
const char *
|
|
102
120
|
divsufsort64_version(void);
|
|
103
121
|
|
|
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|
+
|
|
123
|
+
/**
|
|
124
|
+
* Constructs the burrows-wheeler transformed string of a given string and suffix array.
|
|
125
|
+
* @param T[0..n-1] The input string.
|
|
126
|
+
* @param U[0..n-1] The output string. (can be T)
|
|
127
|
+
* @param SA[0..n-1] The suffix array. (can be NULL)
|
|
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|
+
* @param n The length of the given string.
|
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|
+
* @param idx The output primary index.
|
|
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|
+
* @return 0 if no error occurred, -1 or -2 otherwise.
|
|
131
|
+
*/
|
|
132
|
+
DIVSUFSORT_API
|
|
133
|
+
saint_t
|
|
134
|
+
bw_transform64(const sauchar_t *T, sauchar_t *U,
|
|
135
|
+
saidx64_t *SA /* can NULL */,
|
|
136
|
+
saidx64_t n, saidx64_t *idx);
|
|
137
|
+
|
|
138
|
+
/**
|
|
139
|
+
* Inverse BW-transforms a given BWTed string.
|
|
140
|
+
* @param T[0..n-1] The input string.
|
|
141
|
+
* @param U[0..n-1] The output string. (can be T)
|
|
142
|
+
* @param A[0..n-1] The temporary array. (can be NULL)
|
|
143
|
+
* @param n The length of the given string.
|
|
144
|
+
* @param idx The primary index.
|
|
145
|
+
* @return 0 if no error occurred, -1 or -2 otherwise.
|
|
146
|
+
*/
|
|
147
|
+
DIVSUFSORT_API
|
|
148
|
+
saint_t
|
|
149
|
+
inverse_bw_transform64(const sauchar_t *T, sauchar_t *U,
|
|
150
|
+
saidx64_t *A /* can NULL */,
|
|
151
|
+
saidx64_t n, saidx64_t idx);
|
|
152
|
+
|
|
153
|
+
/**
|
|
154
|
+
* Checks the correctness of a given suffix array.
|
|
155
|
+
* @param T[0..n-1] The input string.
|
|
156
|
+
* @param SA[0..n-1] The input suffix array.
|
|
157
|
+
* @param n The length of the given string.
|
|
158
|
+
* @param verbose The verbose mode.
|
|
159
|
+
* @return 0 if no error occurred.
|
|
160
|
+
*/
|
|
161
|
+
DIVSUFSORT_API
|
|
162
|
+
saint_t
|
|
163
|
+
sufcheck64(const sauchar_t *T, const saidx64_t *SA, saidx64_t n, saint_t verbose);
|
|
164
|
+
|
|
165
|
+
/**
|
|
166
|
+
* Search for the pattern P in the string T.
|
|
167
|
+
* @param T[0..Tsize-1] The input string.
|
|
168
|
+
* @param Tsize The length of the given string.
|
|
169
|
+
* @param P[0..Psize-1] The input pattern string.
|
|
170
|
+
* @param Psize The length of the given pattern string.
|
|
171
|
+
* @param SA[0..SAsize-1] The input suffix array.
|
|
172
|
+
* @param SAsize The length of the given suffix array.
|
|
173
|
+
* @param idx The output index.
|
|
174
|
+
* @return The count of matches if no error occurred, -1 otherwise.
|
|
175
|
+
*/
|
|
176
|
+
DIVSUFSORT_API
|
|
177
|
+
saidx64_t
|
|
178
|
+
sa_search64(const sauchar_t *T, saidx64_t Tsize,
|
|
179
|
+
const sauchar_t *P, saidx64_t Psize,
|
|
180
|
+
const saidx64_t *SA, saidx64_t SAsize,
|
|
181
|
+
saidx64_t *left);
|
|
182
|
+
|
|
183
|
+
/**
|
|
184
|
+
* Search for the character c in the string T.
|
|
185
|
+
* @param T[0..Tsize-1] The input string.
|
|
186
|
+
* @param Tsize The length of the given string.
|
|
187
|
+
* @param SA[0..SAsize-1] The input suffix array.
|
|
188
|
+
* @param SAsize The length of the given suffix array.
|
|
189
|
+
* @param c The input character.
|
|
190
|
+
* @param idx The output index.
|
|
191
|
+
* @return The count of matches if no error occurred, -1 otherwise.
|
|
192
|
+
*/
|
|
193
|
+
DIVSUFSORT_API
|
|
194
|
+
saidx64_t
|
|
195
|
+
sa_simplesearch64(const sauchar_t *T, saidx64_t Tsize,
|
|
196
|
+
const saidx64_t *SA, saidx64_t SAsize,
|
|
197
|
+
saint_t c, saidx64_t *left);
|
|
198
|
+
|
|
199
|
+
|
|
104
200
|
#ifdef __cplusplus
|
|
105
201
|
} /* extern "C" */
|
|
106
202
|
#endif /* __cplusplus */
|
|
@@ -27,6 +27,10 @@
|
|
|
27
27
|
#ifndef _DIVSUFSORT_PRIVATE_H
|
|
28
28
|
#define _DIVSUFSORT_PRIVATE_H 1
|
|
29
29
|
|
|
30
|
+
#ifdef __cplusplus
|
|
31
|
+
extern "C" {
|
|
32
|
+
#endif /* __cplusplus */
|
|
33
|
+
|
|
30
34
|
#if HAVE_CONFIG_H
|
|
31
35
|
# include "config.h"
|
|
32
36
|
#endif
|
|
@@ -54,6 +58,29 @@
|
|
|
54
58
|
# include <stdint.h>
|
|
55
59
|
# endif
|
|
56
60
|
#endif
|
|
61
|
+
#if defined(BUILD_DIVSUFSORT64)
|
|
62
|
+
# include "divsufsort64.h"
|
|
63
|
+
# ifndef SAIDX_T
|
|
64
|
+
# define SAIDX_T
|
|
65
|
+
# define saidx_t saidx64_t
|
|
66
|
+
# endif /* SAIDX_T */
|
|
67
|
+
# ifndef PRIdSAIDX_T
|
|
68
|
+
# define PRIdSAIDX_T PRIdSAIDX64_T
|
|
69
|
+
# endif /* PRIdSAIDX_T */
|
|
70
|
+
# define divsufsort divsufsort64
|
|
71
|
+
# define divbwt divbwt64
|
|
72
|
+
# define divsufsort_version divsufsort64_version
|
|
73
|
+
# define bw_transform bw_transform64
|
|
74
|
+
# define inverse_bw_transform inverse_bw_transform64
|
|
75
|
+
# define sufcheck sufcheck64
|
|
76
|
+
# define sa_search sa_search64
|
|
77
|
+
# define sa_simplesearch sa_simplesearch64
|
|
78
|
+
# define sssort sssort64
|
|
79
|
+
# define trsort trsort64
|
|
80
|
+
#else
|
|
81
|
+
# include "divsufsort.h"
|
|
82
|
+
#endif
|
|
83
|
+
|
|
57
84
|
|
|
58
85
|
/*- Constants -*/
|
|
59
86
|
#if !defined(UINT8_MAX)
|
|
@@ -90,27 +117,27 @@
|
|
|
90
117
|
#endif
|
|
91
118
|
/* minstacksize = log(SS_BLOCKSIZE) / log(3) * 2 */
|
|
92
119
|
#if SS_BLOCKSIZE == 0
|
|
93
|
-
# if
|
|
94
|
-
# define SS_MISORT_STACKSIZE (64)
|
|
95
|
-
# else
|
|
120
|
+
# if defined(BUILD_DIVSUFSORT64)
|
|
96
121
|
# define SS_MISORT_STACKSIZE (96)
|
|
122
|
+
# else
|
|
123
|
+
# define SS_MISORT_STACKSIZE (64)
|
|
97
124
|
# endif
|
|
98
125
|
#elif SS_BLOCKSIZE <= 4096
|
|
99
126
|
# define SS_MISORT_STACKSIZE (16)
|
|
100
127
|
#else
|
|
101
128
|
# define SS_MISORT_STACKSIZE (24)
|
|
102
129
|
#endif
|
|
103
|
-
#if
|
|
104
|
-
# define SS_SMERGE_STACKSIZE (32)
|
|
105
|
-
#else
|
|
130
|
+
#if defined(BUILD_DIVSUFSORT64)
|
|
106
131
|
# define SS_SMERGE_STACKSIZE (64)
|
|
132
|
+
#else
|
|
133
|
+
# define SS_SMERGE_STACKSIZE (32)
|
|
107
134
|
#endif
|
|
108
135
|
/* for trsort.c */
|
|
109
136
|
#define TR_INSERTIONSORT_THRESHOLD (8)
|
|
110
|
-
#if
|
|
111
|
-
# define TR_STACKSIZE (64)
|
|
112
|
-
#else
|
|
137
|
+
#if defined(BUILD_DIVSUFSORT64)
|
|
113
138
|
# define TR_STACKSIZE (96)
|
|
139
|
+
#else
|
|
140
|
+
# define TR_STACKSIZE (64)
|
|
114
141
|
#endif
|
|
115
142
|
|
|
116
143
|
|
|
@@ -164,23 +191,17 @@
|
|
|
164
191
|
/*- Private Prototypes -*/
|
|
165
192
|
/* sssort.c */
|
|
166
193
|
void
|
|
167
|
-
sssort(const sauchar_t *Td, const
|
|
168
|
-
|
|
169
|
-
|
|
194
|
+
sssort(const sauchar_t *Td, const saidx_t *PA,
|
|
195
|
+
saidx_t *first, saidx_t *last,
|
|
196
|
+
saidx_t *buf, saidx_t bufsize,
|
|
170
197
|
saidx_t depth, saidx_t n, saint_t lastsuffix);
|
|
171
198
|
/* trsort.c */
|
|
172
199
|
void
|
|
173
|
-
trsort(
|
|
200
|
+
trsort(saidx_t *ISA, saidx_t *SA, saidx_t n, saidx_t depth);
|
|
201
|
+
|
|
174
202
|
|
|
175
|
-
|
|
176
|
-
|
|
177
|
-
|
|
178
|
-
6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
|
|
179
|
-
6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,
|
|
180
|
-
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
|
|
181
|
-
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
|
|
182
|
-
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,
|
|
183
|
-
7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7
|
|
184
|
-
};
|
|
203
|
+
#ifdef __cplusplus
|
|
204
|
+
} /* extern "C" */
|
|
205
|
+
#endif /* __cplusplus */
|
|
185
206
|
|
|
186
207
|
#endif /* _DIVSUFSORT_PRIVATE_H */
|