react-mutation-mapper 0.9.2 → 0.9.3

package/dist/index.js

@@ -7898,9 +7898,19 @@ var TrackPanel = /** @class */ (function (_super) {
         configurable: true,
         writable: true,
         value: function (trackName, ptmSource) {
+            var _this = this;
             var _a;
             return !this.props.trackVisibility ||
-                this.props.trackVisibility[trackName] === 'visible' ? (React__namespace.createElement(PtmTrack, { store: this.props.store, pubMedCache: this.props.pubMedCache, ensemblTranscriptId: (_a = this.props.store.activeTranscript) === null || _a === void 0 ? void 0 : _a.result, dataStore: this.props.store.dataStore, width: this.props.geneWidth, xOffset: this.props.geneXOffset, proteinLength: this.proteinLength, dataSource: ptmSource, dataSourceUrl: cbioportalUtils.PTM_SOURCE_URL[ptmSource], ptmTooltipColumnOverrides: this.getPtmTooltipColumnOverrides(ptmSource), collapsed: this.props.collapsePtmTrack })) : null;
+                this.props.trackVisibility[trackName] === 'visible' ? (React__namespace.createElement(PtmTrack, { store: this.props.store, pubMedCache: this.props.pubMedCache, ensemblTranscriptId: ((_a = this.props.store.activeTranscript) === null || _a === void 0 ? void 0 : _a.result)
+                    ? (function () {
+                        var _a;
+                        var tid = _this.props.store.activeTranscript
+                            .result;
+                        var ver = (_a = _this.props.store
+                            .transcriptsByTranscriptId[tid]) === null || _a === void 0 ? void 0 : _a.transcriptIdVersion;
+                        return ver ? "".concat(tid, ".").concat(ver) : tid;
+                    })()
+                    : undefined, dataStore: this.props.store.dataStore, width: this.props.geneWidth, xOffset: this.props.geneXOffset, proteinLength: this.proteinLength, dataSource: ptmSource, dataSourceUrl: cbioportalUtils.PTM_SOURCE_URL[ptmSource], ptmTooltipColumnOverrides: this.getPtmTooltipColumnOverrides(ptmSource), collapsed: this.props.collapsePtmTrack })) : null;
         }
     });
     Object.defineProperty(TrackPanel.prototype, "getPtmTooltipColumnOverrides", {
@@ -10850,11 +10860,15 @@ var TranscriptDropdown = /** @class */ (function (_super) {
         value: function (activeTranscript, allTranscripts, canonicalTranscript, transcriptsByTranscriptId, mutationsByTranscriptId) {
             var _this = this;
             var activeRefseqMrnaId = transcriptsByTranscriptId[activeTranscript].refseqMrnaId;
+            var activeVersionSuffix = transcriptsByTranscriptId[activeTranscript].transcriptIdVersion;
+            var activeVersionedId = activeVersionSuffix
+                ? "".concat(activeTranscript, ".").concat(activeVersionSuffix)
+                : activeTranscript;
             return (React__namespace.createElement("div", null,
                 React__namespace.createElement(Select__default["default"], { "aria-label": "Transcript Dropdown", value: {
                         label: activeRefseqMrnaId
                             ? activeRefseqMrnaId
-                            : activeTranscript,
+                            : activeVersionedId,
                         value: activeTranscript,
                     }, clearable: false, 
                     // need to explicitly set deleteRemoves for clearable
@@ -10862,11 +10876,16 @@ var TranscriptDropdown = /** @class */ (function (_super) {
                     deleteRemoves: false, options: this.sortTranscripts(allTranscripts).map(function (t) {
                         var length = transcriptsByTranscriptId[t].proteinLength;
                         var refseqMrnaId = transcriptsByTranscriptId[t].refseqMrnaId;
+                        var versionSuffix = transcriptsByTranscriptId[t]
+                            .transcriptIdVersion;
+                        var versionedId = versionSuffix
+                            ? "".concat(t, ".").concat(versionSuffix)
+                            : t;
                         var ccdsId = transcriptsByTranscriptId[t].ccdsId;
                         var nrOfMutations = mutationsByTranscriptId &&
                             mutationsByTranscriptId[t] &&
                             mutationsByTranscriptId[t].length;
-                        var label = "".concat(refseqMrnaId ? "".concat(refseqMrnaId, " / ") : '').concat(t, " ").concat(ccdsId ? "(".concat(ccdsId, ")") : '', " ").concat(length ? "(".concat(length, " amino acids)") : '', " ").concat(nrOfMutations
+                        var label = "".concat(refseqMrnaId ? "".concat(refseqMrnaId, " / ") : '').concat(versionedId, " ").concat(ccdsId ? "(".concat(ccdsId, ")") : '', " ").concat(length ? "(".concat(length, " amino acids)") : '', " ").concat(nrOfMutations
                             ? "(".concat(nrOfMutations, " mutations)")
                             : '', " ").concat(t === canonicalTranscript ? ' (default)' : '');
                         return { label: label, value: t };
@@ -10921,23 +10940,29 @@ var TranscriptDropdown = /** @class */ (function (_super) {
 var styles = {"geneSummary":"geneSummary-module_geneSummary__2baMD","geneSummaryCompact":"geneSummary-module_geneSummaryCompact__3_qUv","hugoSymbol":"geneSummary-module_hugoSymbol__KSt5x"};
 
 var GeneSummaryInfo = function (_a) {
+    var _b;
     var uniprotId = _a.uniprotId, showDropDown = _a.showDropDown, canonicalTranscript = _a.canonicalTranscript, compactStyle = _a.compactStyle, activeTranscript = _a.activeTranscript, transcriptsByTranscriptId = _a.transcriptsByTranscriptId, transcriptSummaryUrlTemplate = _a.transcriptSummaryUrlTemplate;
     var canonicalTranscriptId = canonicalTranscript.result && canonicalTranscript.result.transcriptId;
     var transcript = activeTranscript && activeTranscript === canonicalTranscriptId
         ? canonicalTranscript.result
         : transcriptsByTranscriptId[activeTranscript];
     var refseqMrnaId = transcript && transcript.refseqMrnaId;
+    var versionedTranscriptId = transcript && transcript.transcriptIdVersion
+        ? "".concat(transcript.transcriptId, ".").concat(transcript.transcriptIdVersion)
+        : null;
     var ccdsId = transcript && transcript.ccdsId;
     var refSeq = refseqMrnaId ? (React__namespace.createElement("a", { href: cbioportalFrontendCommons.getNCBIlink("/nuccore/".concat(refseqMrnaId)), target: "_blank" }, refseqMrnaId)) : ('-');
     var ensembl = showDropDown
         ? activeTranscript && (React__namespace.createElement("a", { href: getUrl(transcriptSummaryUrlTemplate, {
                 transcriptId: activeTranscript,
-            }), target: "_blank" }, activeTranscript))
+            }), target: "_blank" }, versionedTranscriptId || activeTranscript))
         : canonicalTranscriptId && (
         // down't show drop down, only the canonical transcript
         React__namespace.createElement("a", { href: getUrl(transcriptSummaryUrlTemplate, {
                 transcriptId: canonicalTranscriptId,
-            }), target: "_blank" }, canonicalTranscriptId));
+            }), target: "_blank" }, ((_b = canonicalTranscript.result) === null || _b === void 0 ? void 0 : _b.transcriptIdVersion)
+            ? "".concat(canonicalTranscriptId, ".").concat(canonicalTranscript.result.transcriptIdVersion)
+            : canonicalTranscriptId));
     var ccds = ccdsId ? (React__namespace.createElement("a", { href: cbioportalFrontendCommons.getNCBIlink({
             pathname: '/CCDS/CcdsBrowse.cgi',
             query: {