react-mutation-mapper 0.8.88 → 0.8.89

package/dist/index.js

@@ -775,9 +775,9 @@ function sortValue$4(annotation) {
     ]);
 }
 function GenericAnnotation(props) {
-    var annotation = props.annotation, enableCivic = props.enableCivic, enableHotspot = props.enableHotspot, enableMyCancerGenome = props.enableMyCancerGenome, enableOncoKb = props.enableOncoKb, enableRevue = props.enableRevue; props.pubMedCache; var userDisplayName = props.userDisplayName, mergeOncoKbIcons = props.mergeOncoKbIcons, oncoKbContentPadding = props.oncoKbContentPadding;
+    var annotation = props.annotation, enableCivic = props.enableCivic, enableHotspot = props.enableHotspot, enableMyCancerGenome = props.enableMyCancerGenome, enableOncoKb = props.enableOncoKb, enableRevue = props.enableRevue; props.pubMedCache; var userDisplayName = props.userDisplayName, mergeOncoKbIcons = props.mergeOncoKbIcons, oncoKbContentPadding = props.oncoKbContentPadding, hasMultipleCancerTypes = props.hasMultipleCancerTypes;
     return (React__namespace.createElement("span", { style: { display: 'flex', minWidth: 100 } },
-        enableOncoKb && (React__namespace.createElement(oncokbFrontendCommons.OncoKB, { usingPublicOncoKbInstance: annotation.usingPublicOncoKbInstance, hugoGeneSymbol: annotation.hugoGeneSymbol, geneNotExist: !annotation.oncoKbGeneExist, isCancerGene: annotation.isOncoKbCancerGene, status: annotation.oncoKbStatus, indicator: annotation.oncoKbIndicator, availableDataTypes: annotation.oncoKbAvailableDataTypes, mergeAnnotationIcons: mergeOncoKbIcons, userDisplayName: userDisplayName, contentPadding: oncoKbContentPadding })),
+        enableOncoKb && (React__namespace.createElement(oncokbFrontendCommons.OncoKB, { usingPublicOncoKbInstance: annotation.usingPublicOncoKbInstance, hugoGeneSymbol: annotation.hugoGeneSymbol, geneNotExist: !annotation.oncoKbGeneExist, isCancerGene: annotation.isOncoKbCancerGene, status: annotation.oncoKbStatus, indicator: annotation.oncoKbIndicator, availableDataTypes: annotation.oncoKbAvailableDataTypes, mergeAnnotationIcons: mergeOncoKbIcons, userDisplayName: userDisplayName, contentPadding: oncoKbContentPadding, hasMultipleCancerTypes: hasMultipleCancerTypes })),
         enableRevue ? (annotation.vue ? (React__namespace.createElement(RevueCell, { vue: annotation.vue })) : (React__namespace.createElement("span", { className: "" + annotationStyles['annotation-item'] }))) : (React__namespace.createElement(React__namespace.Fragment, null)),
         enableCivic && (React__namespace.createElement(Civic, { civicEntry: annotation.civicEntry, civicStatus: annotation.civicStatus, hasCivicVariants: annotation.hasCivicVariants })),
         enableMyCancerGenome && (React__namespace.createElement(MyCancerGenome, { linksHTML: annotation.myCancerGenomeLinks })),
@@ -2618,8 +2618,10 @@ var FilterResetPanel = /** @class */ (function (_super) {
         value: function () {
             return (React__namespace.createElement("div", { className: this.props.className, "data-test": "filter-reset-panel" },
                 React__namespace.createElement("span", { style: { verticalAlign: 'middle' } },
-                    this.props.filterInfo,
-                    React__namespace.createElement("button", { className: this.props.buttonClass, style: { cursor: 'pointer', marginLeft: 6 }, onClick: this.props.resetFilters }, this.props.buttonText))));
+                    React__namespace.createElement("strong", null, this.props.filterInfo),
+                    React__namespace.createElement("button", { className: this.props.buttonClass, style: { cursor: 'pointer', marginLeft: 6 }, onClick: this.props.resetFilters }, this.props.buttonText),
+                    React__namespace.createElement("br", null),
+                    this.props.additionalInfo)));
         }
     });
     Object.defineProperty(FilterResetPanel, "defaultProps", {
@@ -2647,6 +2649,7 @@ exports.DataFilterType = void 0;
     DataFilterType["CANCER_TYPE"] = "cancerType";
     DataFilterType["PROTEIN_IMPACT_TYPE"] = "proteinImpactType";
     DataFilterType["MUTATION_STATUS"] = "mutationStatus";
+    DataFilterType["PROTEIN_CHANGE"] = "proteinChange";
 })(exports.DataFilterType || (exports.DataFilterType = {}));
 
 var TEXT_INPUT_FILTER_ID = '_mutationTableTextInputFilter_';
@@ -2729,6 +2732,12 @@ function applyDefaultPositionFilter(filter, mutation) {
 function applyDefaultProteinImpactTypeFilter(filter, mutation) {
     return filter.values.includes(cbioportalFrontendCommons.getProteinImpactType(mutation.mutationType || 'other'));
 }
+function applyDefaultProteinChangeFilter(filter, mutation) {
+    return (mutation.proteinChange !== undefined &&
+        ___default["default"].some(filter.values, function (value) {
+            return value.toLowerCase() === mutation.proteinChange.toLowerCase();
+        }));
+}
 function applyDefaultMutationStatusFilter(filter, mutation) {
     return (mutation.mutationStatus !== undefined &&
         ___default["default"].some(filter.values, function (value) {
@@ -6002,7 +6011,6 @@ var PercentToggle = /** @class */ (function (_super) {
                 } },
                 React__namespace.createElement("div", { style: {
                         marginLeft: 10,
-                        marginRight: 10,
                     } },
                     React__namespace.createElement("div", { style: { textAlign: 'center' } }, "Y-Axis:"),
                     React__namespace.createElement(AxisScaleSwitch, { selectedScale: this.props.axisMode, onChange: this.props.onScaleToggle }))));
@@ -9577,7 +9585,7 @@ var DefaultMutationMapperFilterApplier = /** @class */ (function () {
         get: function () {
             var _a;
             return tslib.__assign((_a = {}, _a[exports.DataFilterType.POSITION] = this.applyPositionFilter, _a[exports.DataFilterType.ONCOKB] = this.applyOncoKbFilter, _a[exports.DataFilterType.HOTSPOT] = this.applyHostpotFilter, _a[exports.DataFilterType.MUTATION] = this.applyMutationFilter, _a[exports.DataFilterType.PROTEIN_IMPACT_TYPE] = this
-                .applyProteinImpactTypeFilter, _a[exports.DataFilterType.MUTATION_STATUS] = this.applyMutationStatusFilter, _a), this.filterAppliersOverride);
+                .applyProteinImpactTypeFilter, _a[exports.DataFilterType.MUTATION_STATUS] = this.applyMutationStatusFilter, _a[exports.DataFilterType.PROTEIN_CHANGE] = this.applyProteinChangeFilter, _a), this.filterAppliersOverride);
         },
         enumerable: false,
         configurable: true
@@ -9646,6 +9654,14 @@ var DefaultMutationMapperFilterApplier = /** @class */ (function () {
             return applyDefaultMutationStatusFilter(filter, mutation);
         }
     });
+    Object.defineProperty(DefaultMutationMapperFilterApplier.prototype, "applyProteinChangeFilter", {
+        enumerable: false,
+        configurable: true,
+        writable: true,
+        value: function (filter, mutation) {
+            return applyDefaultProteinChangeFilter(filter, mutation);
+        }
+    });
     tslib.__decorate([
         autobind__default["default"]
     ], DefaultMutationMapperFilterApplier.prototype, "applyFilter", null);
@@ -9667,6 +9683,9 @@ var DefaultMutationMapperFilterApplier = /** @class */ (function () {
     tslib.__decorate([
         autobind__default["default"]
     ], DefaultMutationMapperFilterApplier.prototype, "applyMutationStatusFilter", null);
+    tslib.__decorate([
+        autobind__default["default"]
+    ], DefaultMutationMapperFilterApplier.prototype, "applyProteinChangeFilter", null);
     return DefaultMutationMapperFilterApplier;
 }());
 
@@ -11575,6 +11594,7 @@ exports.applyDataFiltersOnDatum = applyDataFiltersOnDatum;
 exports.applyDefaultMutationFilter = applyDefaultMutationFilter;
 exports.applyDefaultMutationStatusFilter = applyDefaultMutationStatusFilter;
 exports.applyDefaultPositionFilter = applyDefaultPositionFilter;
+exports.applyDefaultProteinChangeFilter = applyDefaultProteinChangeFilter;
 exports.applyDefaultProteinImpactTypeFilter = applyDefaultProteinImpactTypeFilter;
 exports.calculateGnomadAlleleFrequency = calculateGnomadAlleleFrequency;
 exports.civicDownload = download$6;