react-mutation-mapper 0.8.54 → 0.8.56

package/README.md

@@ -58,7 +58,7 @@ class Example extends React.Component {
         store={
           new DefaultMutationMapperStore(
             {hugoGeneSymbol: "TP53", entrezGeneId: 7157},
-            {isoformOverrideSource: "uniprot", filterMutationsBySelectedTranscript: true},
+            {isoformOverrideSource: "mskcc", filterMutationsBySelectedTranscript: true},
             () => [{
               chromosome: "17",
               startPosition: 41246256,

package/dist/component/StatusHelpers.d.ts

@@ -1,3 +1,2 @@
-/// <reference types="react" />
 export declare function loaderIcon(className?: string): JSX.Element;
 export declare function errorIcon(errorMessage: string): JSX.Element;

package/dist/component/clinvar/ClinvarSummary.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { Clinvar } from 'genome-nexus-ts-api-client';
 export declare type ClinvarSummaryProps = {
     clinvar?: Clinvar;

package/dist/component/column/MyVariantInfoHelper.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { Mutation, RemoteData } from 'cbioportal-utils';
 import { MyVariantInfo, VariantAnnotation } from 'genome-nexus-ts-api-client';
 export declare type MyVariantInfoProps = {

package/dist/component/filter/ProteinImpactTypeHelper.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { IProteinImpactTypeColors } from '../../model/ProteinImpact';
 export declare function getProteinImpactTypeOptionDisplayValueMap(proteinImpactTypeColorMap: {
     [proteinImpactType: string]: string;

package/dist/component/lollipopPlot/DomainTooltip.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { PfamDomain, PfamDomainRange } from 'genome-nexus-ts-api-client';
 import { MobxCache } from 'cbioportal-utils';
 export interface IDomainTooltipProps {

package/dist/component/mutationTable/MutationColumnHelper.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { Mutation } from 'cbioportal-utils';
 import { Column } from 'react-table';
 import { proteinChangeSortMethod } from '../column/ProteinChange';

package/dist/component/oncokb/OncoKbHelper.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { OncoKbCardDataType } from 'cbioportal-utils';
 export default class OncoKbHelper {
     static get TX_LEVELS(): string[];

package/dist/index.es.js

@@ -2031,7 +2031,7 @@ function getUrl(urlTemplate, templateVariables) {
 }
 function fetchVariantAnnotationsByMutation(mutations, fields, isoformOverrideSource, client) {
     if (fields === void 0) { fields = ['annotation_summary']; }
-    if (isoformOverrideSource === void 0) { isoformOverrideSource = 'uniprot'; }
+    if (isoformOverrideSource === void 0) { isoformOverrideSource = 'mskcc'; }
     if (client === void 0) { client = DEFAULT_GENOME_NEXUS_CLIENT; }
     return __awaiter(this, void 0, void 0, function () {
         var genomicLocations, _a;
@@ -2059,7 +2059,7 @@ function fetchVariantAnnotationsByMutation(mutations, fields, isoformOverrideSou
 }
 function fetchVariantAnnotationsIndexedByGenomicLocation(mutations, fields, isoformOverrideSource, client) {
     if (fields === void 0) { fields = ['annotation_summary']; }
-    if (isoformOverrideSource === void 0) { isoformOverrideSource = 'uniprot'; }
+    if (isoformOverrideSource === void 0) { isoformOverrideSource = 'mskcc'; }
     if (client === void 0) { client = DEFAULT_GENOME_NEXUS_CLIENT; }
     return __awaiter(this, void 0, void 0, function () {
         var variantAnnotations;
@@ -10634,7 +10634,7 @@ var DefaultMutationMapperDataFetcher = /** @class */ (function () {
         configurable: true,
         writable: true,
         value: function (mutations, isoformOverrideSource, client) {
-            if (isoformOverrideSource === void 0) { isoformOverrideSource = 'uniprot'; }
+            if (isoformOverrideSource === void 0) { isoformOverrideSource = 'mskcc'; }
             if (client === void 0) { client = this.genomeNexusClient; }
             return __awaiter(this, void 0, void 0, function () {
                 var indexedVariantAnnotations;
@@ -11776,7 +11776,7 @@ var DefaultMutationMapperStore = /** @class */ (function () {
     });
     Object.defineProperty(DefaultMutationMapperStore.prototype, "isoformOverrideSource", {
         get: function () {
-            return this.config.isoformOverrideSource || 'uniprot';
+            return this.config.isoformOverrideSource || 'mskcc';
         },
         enumerable: false,
         configurable: true