react-mutation-mapper 0.8.20 → 0.8.24

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Files changed (15) hide show
  1. package/dist/component/lollipopMutationPlot/LollipopMutationPlot.d.ts +1 -0
  2. package/dist/component/mutationMapper/MutationMapper.d.ts +1 -0
  3. package/dist/component/track/TrackItem.d.ts +2 -1
  4. package/dist/component/track/TrackPanel.d.ts +1 -0
  5. package/dist/component/track/TrackSelector.d.ts +6 -1
  6. package/dist/component/track/UniprotTopologyTrack.d.ts +38 -0
  7. package/dist/index.es.js +412 -106
  8. package/dist/index.es.js.map +1 -1
  9. package/dist/index.js +412 -105
  10. package/dist/index.js.map +1 -1
  11. package/dist/model/MutationMapperDataFetcher.d.ts +1 -1
  12. package/dist/model/MutationMapperStore.d.ts +2 -1
  13. package/dist/store/DefaultMutationMapperDataFetcher.d.ts +1 -1
  14. package/dist/store/DefaultMutationMapperStore.d.ts +2 -1
  15. package/package.json +5 -5
package/dist/model/MutationMapperDataFetcher.d.ts CHANGED
@@ -15,7 +15,7 @@ export interface MutationMapperDataFetcher {
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  fetchCanonicalTranscript(hugoSymbol: string, isoformOverrideSource: string, client?: GenomeNexusAPI): Promise<EnsemblTranscript>;
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  fetchEnsemblTranscriptsByEnsemblFilter(ensemblFilter: Partial<EnsemblFilter>, client?: GenomeNexusAPI): Promise<EnsemblTranscript[] | undefined>;
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  fetchPtmData(ensemblId: string, client?: GenomeNexusAPI): Promise<PostTranslationalModification[]>;
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- fetchUniprotFeatures(swissProtId: string, client?: GenomeNexusAPI): Promise<UniprotFeature[]>;
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+ fetchUniprotFeatures(swissProtId: string, category: string[], client?: GenomeNexusAPI): Promise<UniprotFeature[]>;
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  fetchCancerHotspotData(ensemblId: string, client?: GenomeNexusAPIInternal): Promise<Hotspot[]>;
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  fetchAggregatedHotspotsData(mutations: Mutation[], client?: GenomeNexusAPIInternal): Promise<AggregatedHotspots[]>;
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  fetchOncoKbCancerGenes(client?: OncoKbAPI): Promise<CancerGene[]>;
package/dist/model/MutationMapperStore.d.ts CHANGED
@@ -1,4 +1,4 @@
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- import { Gene, ICivicGeneIndex, ICivicVariantIndex, IHotspotIndex, IMyCancerGenomeData, IOncoKbData, Mutation, PostTranslationalModification, RemoteData } from 'cbioportal-utils';
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+ import { Gene, ICivicGeneIndex, ICivicVariantIndex, IHotspotIndex, IMyCancerGenomeData, IOncoKbData, Mutation, PostTranslationalModification, RemoteData, UniprotTopology } from 'cbioportal-utils';
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  import { EnsemblTranscript, Hotspot, MyVariantInfo, PfamDomain, VariantAnnotation } from 'genome-nexus-ts-api-client';
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  import { CancerGene, IndicatorQueryResp, OncoKBInfo } from 'oncokb-ts-api-client';
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  import DataStore from './DataStore';
@@ -44,6 +44,7 @@ export interface MutationMapperStore<T extends Mutation> {
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  [position: number]: PostTranslationalModification[];
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  };
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  } | undefined>;
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+ uniprotTopologyData: RemoteData<UniprotTopology[] | undefined>;
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  indexedHotspotData: RemoteData<IHotspotIndex | undefined>;
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  hotspotsByPosition: {
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  [pos: number]: Hotspot[];
package/dist/store/DefaultMutationMapperDataFetcher.d.ts CHANGED
@@ -31,7 +31,7 @@ export declare class DefaultMutationMapperDataFetcher implements MutationMapperD
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  fetchCanonicalTranscript(hugoSymbol: string, isoformOverrideSource: string, client?: GenomeNexusAPI): Promise<EnsemblTranscript>;
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  fetchEnsemblTranscriptsByEnsemblFilter(ensemblFilter: Partial<EnsemblFilter>, client?: GenomeNexusAPI): Promise<EnsemblTranscript[] | undefined>;
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  fetchPtmData(ensemblId: string, client?: GenomeNexusAPI): Promise<PostTranslationalModification[]>;
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- fetchUniprotFeatures(swissProtId: string, client?: GenomeNexusAPI): Promise<UniprotFeature[]>;
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+ fetchUniprotFeatures(swissProtId: string, category: string[], client?: GenomeNexusAPI): Promise<UniprotFeature[]>;
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  fetchCancerHotspotData(ensemblId: string, client?: GenomeNexusAPIInternal): Promise<Hotspot[]>;
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  fetchAggregatedHotspotsData(mutations: Mutation[], client?: GenomeNexusAPIInternal): Promise<AggregatedHotspots[]>;
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  fetchOncoKbCancerGenes(client?: OncoKbAPI): Promise<CancerGene[]>;
package/dist/store/DefaultMutationMapperStore.d.ts CHANGED
@@ -1,4 +1,4 @@
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- import { AggregatedHotspots, ICivicGeneIndex, ICivicVariantIndex, IHotspotIndex, IMyCancerGenomeData, IOncoKbData, PostTranslationalModification, UniprotFeature } from 'cbioportal-utils';
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+ import { AggregatedHotspots, ICivicGeneIndex, ICivicVariantIndex, IHotspotIndex, IMyCancerGenomeData, IOncoKbData, PostTranslationalModification, UniprotFeature, UniprotTopology } from 'cbioportal-utils';
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  import { Gene, Mutation, IMyVariantInfoIndex } from 'cbioportal-utils';
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  import { CancerGene, IndicatorQueryResp, OncoKBInfo } from 'oncokb-ts-api-client';
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  import { EnsemblTranscript, Hotspot, PfamDomain, PostTranslationalModification as DbPtm, VariantAnnotation } from 'genome-nexus-ts-api-client';
@@ -112,6 +112,7 @@ declare class DefaultMutationMapperStore<T extends Mutation> implements Mutation
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  readonly transcriptsWithAnnotations: MobxPromise<string[] | undefined>;
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  readonly ptmData: MobxPromise<PostTranslationalModification[]>;
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  readonly uniprotPtmData: MobxPromise<UniprotFeature[]>;
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+ readonly uniprotTopologyData: MobxPromise<UniprotTopology[]>;
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  readonly dbPtmData: MobxPromise<DbPtm[]>;
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  readonly ptmDataByProteinPosStart: MobxPromise<{
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  [pos: number]: PostTranslationalModification[];
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "react-mutation-mapper",
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- "version": "0.8.20",
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+ "version": "0.8.24",
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  "description": "Generic Mutation Mapper",
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  "main": "dist/index.js",
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  "module": "dist/index.es.js",
@@ -39,8 +39,8 @@
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  },
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  "dependencies": {
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  "autobind-decorator": "^2.1.0",
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- "cbioportal-frontend-commons": "^0.5.9",
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- "cbioportal-utils": "^0.3.5",
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+ "cbioportal-frontend-commons": "^0.5.12",
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+ "cbioportal-utils": "^0.3.8",
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  "classnames": "^2.2.5",
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  "genome-nexus-ts-api-client": "^1.1.17",
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  "jquery": "^3.2.1",
@@ -48,7 +48,7 @@
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  "memoize-weak-decorator": "^1.0.3",
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  "mobxpromise": "github:cbioportal/mobxpromise#303db72588860bff0a6862a4f07a4e8a3578c94f",
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  "oncokb-styles": "~1.3.0",
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- "oncokb-ts-api-client": "^1.1.8",
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+ "oncokb-ts-api-client": "^1.1.9",
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  "react-collapse": "^4.0.3",
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  "react-if": "^2.1.0",
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  "react-motion": "^0.5.2",
@@ -59,5 +59,5 @@
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  "superagent": "^3.8.3",
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  "typescript": "4.0.3"
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  },
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- "gitHead": "db93c1cdabba095079e424bf041ba3423c709c78"
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+ "gitHead": "e9b16f96e5f5866e4562eb6cf0a10c64fd5214fe"
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  }