react-mutation-mapper 0.8.117 → 0.8.119

package/dist/model/MutationMapperStore.d.ts

@@ -1,4 +1,4 @@
-import { Gene, ICivicGeneIndex, ICivicVariantIndex, IHotspotIndex, IMyCancerGenomeData, IOncoKbData, Mutation, PostTranslationalModification, RemoteData, UniprotTopology } from 'cbioportal-utils';
+import { Gene, ICivicGeneIndex, ICivicVariantIndex, IHotspotIndex, IOncoKbData, Mutation, PostTranslationalModification, RemoteData, UniprotTopology } from 'cbioportal-utils';
 import { EnsemblTranscript, Hotspot, MyVariantInfo, PfamDomain, VariantAnnotation } from 'genome-nexus-ts-api-client';
 import { CancerGene, IndicatorQueryResp, OncoKBInfo } from 'oncokb-ts-api-client';
 import DataStore from './DataStore';
@@ -58,7 +58,6 @@ export interface MutationMapperStore<T extends Mutation> {
     usingPublicOncoKbInstance: boolean;
     civicGenes?: RemoteData<ICivicGeneIndex | undefined>;
     civicVariants?: RemoteData<ICivicVariantIndex | undefined>;
-    myCancerGenomeData?: IMyCancerGenomeData;
     indexedVariantAnnotations: RemoteData<{
         [genomicLocation: string]: VariantAnnotation;
     } | undefined>;

package/dist/store/DefaultMutationMapperStore.d.ts

@@ -1,5 +1,5 @@
 import { MobxPromise } from 'cbioportal-frontend-commons';
-import { AggregatedHotspots, ICivicGeneIndex, ICivicVariantIndex, IHotspotIndex, IMyCancerGenomeData, IOncoKbData, PostTranslationalModification, UniprotFeature, UniprotTopology } from 'cbioportal-utils';
+import { AggregatedHotspots, ICivicGeneIndex, ICivicVariantIndex, IHotspotIndex, IOncoKbData, PostTranslationalModification, UniprotFeature, UniprotTopology } from 'cbioportal-utils';
 import { Gene, Mutation, IMyVariantInfoIndex } from 'cbioportal-utils';
 import { CancerGene, IndicatorQueryResp, OncoKBInfo } from 'oncokb-ts-api-client';
 import { EnsemblTranscript, Hotspot, PfamDomain, PostTranslationalModification as DbPtm, VariantAnnotation } from 'genome-nexus-ts-api-client';
@@ -52,7 +52,6 @@ declare class DefaultMutationMapperStore<T extends Mutation> implements Mutation
     get annotationFields(): string[];
     protected getDataStore?: () => DataStore;
     get dataStore(): DataStore;
-    readonly myCancerGenomeData: IMyCancerGenomeData;
     get mutations(): T[];
     protected getAnnotatedMutationsByTranscriptId(mutations: T[], transcriptId: string, indexedVariantAnnotations: {
         [genomicLocation: string]: VariantAnnotation;

package/dist/styles.css

@@ -1,3 +1,6 @@
+.gnomad-frequency-table .rt-table .rt-tbody .rt-td {
+  padding: 4px 5px;
+}
 .default-mutation-table {
   font-size: 0.8rem;
   min-width: 300px;
@@ -11,9 +14,6 @@
 .default-mutation-table .-pagination .-center {
   flex-grow: 5;
 }
-.gnomad-frequency-table .rt-table .rt-tbody .rt-td {
-  padding: 4px 5px;
-}
 .lollipop_mutation_plot__controls .rangeslider {
   margin: 0;
 }
@@ -139,10 +139,6 @@
   justify-content: space-around;
   align-items: center;
 }
-.myCancerGenome-module_link-list__2wFhH {
-  list-style-position: inside;
-  padding-left: 0;
-}
 .hotspotInfo-module_hotspot-info__S24fX {
   max-width: 400px;
   display: block;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "react-mutation-mapper",
-  "version": "0.8.117",
+  "version": "0.8.119",
   "description": "Generic Mutation Mapper",
   "main": "dist/index.js",
   "module": "dist/index.es.js",
@@ -39,14 +39,14 @@
   },
   "dependencies": {
     "autobind-decorator": "^2.1.0",
-    "cbioportal-frontend-commons": "^0.5.73",
-    "cbioportal-utils": "^0.3.47",
+    "cbioportal-frontend-commons": "^0.5.75",
+    "cbioportal-utils": "^0.3.48",
     "classnames": "^2.2.5",
     "genome-nexus-ts-api-client": "^1.1.35",
     "jquery": "^3.2.1",
     "lodash": "^4.17.15",
     "memoize-weak-decorator": "^1.0.3",
-    "oncokb-frontend-commons": "^0.0.31",
+    "oncokb-frontend-commons": "^0.0.32",
     "oncokb-styles": "~1.4.2",
     "oncokb-ts-api-client": "^1.3.8",
     "react-collapse": "^4.0.3",
@@ -59,5 +59,5 @@
     "superagent": "^3.8.3",
     "typescript": "4.0.3"
   },
-  "gitHead": "8c7f9a536cec847f1742e16f5c88535131e3961b"
+  "gitHead": "d920bfdc2507aeea88827a6b8622a996b9be901e"
 }

package/dist/component/myCancerGenome/MyCancerGenome.d.ts

@@ -1,11 +0,0 @@
-import * as React from 'react';
-export interface IMyCancerGenomeProps {
-    linksHTML: string[];
-}
-export declare function placeArrow(tooltipEl: any): void;
-export declare function sortValue(links: string[]): number;
-export declare function download(links: string[]): string;
-export declare function myCancerGenomeLinks(linksHTML: string[]): JSX.Element;
-export default class MyCancerGenome extends React.Component<IMyCancerGenomeProps> {
-    render(): JSX.Element;
-}

package/dist/component/myCancerGenome/MyCancerGenome.spec.d.ts

@@ -1 +0,0 @@
-export {};