react-mutation-mapper 0.8.101 → 0.8.103

package/dist/component/civic/CivicCard.spec.d.ts

@@ -1,11 +1,9 @@
 export declare function getCivicVariantData(): {
     id: number;
     name: string;
-    geneId: number;
     description: string;
     url: string;
     evidenceCounts: {
-        type1: number;
+        predictiveCount: number;
     };
-    evidences: never[];
 };

package/dist/index.es.js

@@ -5,7 +5,7 @@ import { makeObservable, observable, computed, action, reaction } from 'mobx';
 import { observer } from 'mobx-react';
 import * as React from 'react';
 import React__default from 'react';
-import { DefaultTooltip, TruncatedText, getNCBIlink, cachePostMethodsOnClient, CanonicalMutationType, MutationTumorTypeFrequencyTable, FREQUENCY_COLUMNS_DEFINITION, FrequencyTableColumnEnum, CheckedSelect, getSelectedValuesMap, BadgeListSelector, MUT_COLOR_MISSENSE, MUT_COLOR_MISSENSE_PASSENGER, MUT_COLOR_INFRAME, MUT_COLOR_INFRAME_PASSENGER, MUT_COLOR_TRUNC, MUT_COLOR_TRUNC_PASSENGER, MUT_COLOR_SPLICE, MUT_COLOR_SPLICE_PASSENGER, STRUCTURAL_VARIANT_COLOR, STRUCTURAL_VARIANT_PASSENGER_COLOR, MUT_COLOR_OTHER, MUT_COLOR_OTHER_PASSENGER, getCanonicalMutationType, getProteinImpactTypeFromCanonical, ProteinImpactType, getProteinImpactType, resolveColumnVisibility, resolveColumnVisibilityByColumnDefinition, longestCommonStartingSubstring, getTextWidth, unhoverAllComponents, SVGAxis, getComponentIndex, defaultHitzoneConfig, initHitZoneFromConfig, EditableSpan, DownloadControls, EllipsisTextTooltip, remoteData, WindowWrapper } from 'cbioportal-frontend-commons';
+import { DefaultTooltip, TruncatedText, getNCBIlink, cachePostMethodsOnClient, CanonicalMutationType, MutationTumorTypeFrequencyTable, FREQUENCY_COLUMNS_DEFINITION, FrequencyTableColumnEnum, CheckedSelect, getSelectedValuesMap, BadgeListSelector, MUT_COLOR_MISSENSE, MUT_COLOR_MISSENSE_PASSENGER, MUT_COLOR_INFRAME, MUT_COLOR_INFRAME_PASSENGER, MUT_COLOR_TRUNC, MUT_COLOR_TRUNC_PASSENGER, MUT_COLOR_SPLICE, MUT_COLOR_SPLICE_PASSENGER, STRUCTURAL_VARIANT_COLOR, STRUCTURAL_VARIANT_PASSENGER_COLOR, MUT_COLOR_OTHER, MUT_COLOR_OTHER_PASSENGER, getCanonicalMutationType, getProteinImpactTypeFromCanonical, ProteinImpactType, getProteinImpactType, resolveColumnVisibility, resolveColumnVisibilityByColumnDefinition, longestCommonStartingSubstring, getTextWidth, unhoverAllComponents, SVGAxis, getComponentIndex, defaultHitzoneConfig, initHitZoneFromConfig, EditableSpan, DownloadControls, EllipsisTextTooltip, cached, remoteData, WindowWrapper } from 'cbioportal-frontend-commons';
 import classNames from 'classnames';
 import { CIVIC_NA_VALUE, parseMyCancerGenomeLink, uniqueGenomicLocations, indexAnnotationsByGenomicLocation, getCivicEntry, getRemoteDataGroupStatus, getMyCancerGenomeLinks, isLinearClusterHotspot, is3dHotspot, getVariantAnnotation, OncoKbCardDataType, defaultArraySortMethod, defaultSortMethod, getDbsnpRsId, getMyVariantInfoAnnotation, generateHgvsgByMutation, calcProteinChangeSortValue, Pathogenicity, extendMutations, formatNumberValueInSignificantDigits, generateTumorTypeDecomposition, formatPercentValue, countMutationsByProteinChange, numberOfLeadingDecimalZeros, filterLinearClusterHotspotsByMutations, filter3dHotspotsByMutations, isHotspot, defaultHotspotFilter, extractExonInformation, formatExonLocation, formatExonLength, ptmColor, compareByPtmTypePriority, UniprotTopologyTrackToColor, UniprotTopologyTypeToTitle, PtmSource, PTM_SOURCE_URL, getMyVariantInfoAnnotationsFromIndexedVariantAnnotations, getMyCancerGenomeData, genomicLocationString, convertUniprotFeatureToPtm, convertDbPtmToPtm, UniprotCategory, convertUniprotFeatureToUniprotTopology, groupPtmDataByPosition, groupPtmDataByTypeAndPosition, groupCancerHotspotDataByPosition, indexHotspotsData, fetchCivicGenes, fetchCivicVariants, getMutationsByTranscriptId, groupMutationsByProteinStartPos, groupHotspotsByMutations } from 'cbioportal-utils';
 import { getIndicatorData, calculateOncoKbAvailableDataType, oncoKbAnnotationSortValue, OncoKB, OncoKbSummaryTable, LEVELS, getTumorTypeNameWithExclusionInfo, ReferenceList, generateProteinChangeQuery, StructuralVariantType, generateAnnotateStructuralVariantQuery, defaultOncoKbFilter, groupOncoKbIndicatorDataByMutations, defaultOncoKbIndicatorFilter } from 'oncokb-frontend-commons';
@@ -25,7 +25,6 @@ import oncoKbImg from 'oncokb-styles/dist/images/oncogenic.svg';
 import 'oncokb-frontend-commons/dist/styles.css';
 import request, { get } from 'superagent';
 import memoize from 'memoize-weak-decorator';
-import { cached } from 'mobxpromise';
 
 var annotationStyles = {"annotation-item-load":"annotation-module_annotation-item-load__1pDN0","annotation-item-text":"annotation-module_annotation-item-text__Gy_Jv","annotation-item-error":"annotation-module_annotation-item-error__5BhTo","annotation-item":"annotation-module_annotation-item__2EgnB"};
 
@@ -63,15 +62,16 @@ var CivicCard = /** @class */ (function (_super) {
             else {
                 for (var name_1 in variantMap) {
                     var variant = variantMap[name_1];
-                    var entryTypes = '';
-                    for (var evidenceType in variant.evidenceCounts) {
-                        entryTypes +=
-                            evidenceType.toLowerCase() +
-                                ': ' +
-                                variant.evidenceCounts[evidenceType] +
-                                ', ';
-                    }
-                    entryTypes = entryTypes.slice(0, -2) + '.';
+                    var entryTypes = Object.entries(variant.evidenceCounts)
+                        .filter(function (_a) {
+                        _a[0]; var value = _a[1];
+                        return value !== 0;
+                    })
+                        .map(function (_a) {
+                        var key = _a[0], value = _a[1];
+                        return key.slice(0, -5) + ": " + value;
+                    }) // Remove "Count" substring from key
+                        .join(', ');
                     list.push(this.variantItem(name_1, variant.url, variant.name, entryTypes, variant.description));
                 }
             }
@@ -10267,7 +10267,7 @@ var DefaultMutationMapperStore = /** @class */ (function () {
                 invoke: function () { return __awaiter(_this, void 0, void 0, function () {
                     return __generator(this, function (_a) {
                         return [2 /*return*/, this.config.enableCivic
-                                ? fetchCivicGenes(this.mutationData.result || [], this.getDefaultEntrezGeneId)
+                                ? fetchCivicGenes(this.mutationData.result || [])
                                 : {}];
                     });
                 }); },