react-msaview 9.6.0 → 9.7.0

package/bundle/index.js

@@ -611,7 +611,7 @@ In order to be iterable, non-array objects must have a [Symbol.iterator]() metho
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K1(){this._array=[],this._sorted=!0,this._last={generatedLine:-1,generatedColumn:0}}K1.prototype.unsortedForEach=function(t,o){this._array.forEach(t,o)};K1.prototype.add=function(t){C3e(this._last,t)?(this._last=t,this._array.push(t)):(this._sorted=!1,this._array.push(t))};K1.prototype.toArray=function(){return this._sorted||(this._array.sort(eue.compareByGeneratedPositionsInflated),this._sorted=!0),this._array};tue.MappingList=K1});var EU=Bo(rue=>{var sv=yU(),Er=Ny(),X1=vU().ArraySet,x3e=oue().MappingList;function Na(e){e||(e={}),this._file=Er.getArg(e,"file",null),this._sourceRoot=Er.getArg(e,"sourceRoot",null),this._skipValidation=Er.getArg(e,"skipValidation",!1),this._ignoreInvalidMapping=Er.getArg(e,"ignoreInvalidMapping",!1),this._sources=new X1,this._names=new X1,this._mappings=new x3e,this._sourcesContents=null}Na.prototype._version=3;Na.fromSourceMap=function(t,o){var r=t.sourceRoot,n=new Na(Object.assign(o||{},{file:t.file,sourceRoot:r}));return t.eachMapping(function(i){var s={generated:{line:i.generatedLine,column:i.generatedColumn}};i.source!=null&&(s.source=i.source,r!=null&&(s.source=Er.relative(r,s.source)),s.original={line:i.originalLine,column:i.originalColumn},i.name!=null&&(s.name=i.name)),n.addMapping(s)}),t.sources.forEach(function(i){var s=i;r!==null&&(s=Er.relative(r,i)),n._sources.has(s)||n._sources.add(s);var a=t.sourceContentFor(i);a!=null&&n.setSourceContent(i,a)}),n};Na.prototype.addMapping=function(t){var o=Er.getArg(t,"generated"),r=Er.getArg(t,"original",null),n=Er.getArg(t,"source",null),i=Er.getArg(t,"name",null);!this._skipValidation&&this._validateMapping(o,r,n,i)===!1||(n!=null&&(n=String(n),this._sources.has(n)||this._sources.add(n)),i!=null&&(i=String(i),this._names.has(i)||this._names.add(i)),this._mappings.add({generatedLine:o.line,generatedColumn:o.column,originalLine:r!=null&&r.line,originalColumn:r!=null&&r.column,source:n,name:i}))};Na.prototype.setSourceContent=function(t,o){var r=t;this._sourceRoot!=null&&(r=Er.relative(this._sourceRoot,r)),o!=null?(this._sourcesContents||(this._sourcesContents=Object.create(null)),this._sourcesContents[Er.toSetString(r)]=o):this._sourcesContents&&(delete this._sourcesContents[Er.toSetString(r)],Object.keys(this._sourcesContents).length===0&&(this._sourcesContents=null))};Na.prototype.applySourceMap=function(t,o,r){var n=o;if(o==null){if(t.file==null)throw new Error(`SourceMapGenerator.prototype.applySourceMap requires either an explicit source file, or the source map's "file" property. Both were omitted.`);n=t.file}var i=this._sourceRoot;i!=null&&(n=Er.relative(i,n));var s=new X1,a=new X1;this._mappings.unsortedForEach(function(l){if(l.source===n&&l.originalLine!=null){var c=t.originalPositionFor({line:l.originalLine,column:l.originalColumn});c.source!=null&&(l.source=c.source,r!=null&&(l.source=Er.join(r,l.source)),i!=null&&(l.source=Er.relative(i,l.source)),l.originalLine=c.line,l.originalColumn=c.column,c.name!=null&&(l.name=c.name))}var u=l.source;u!=null&&!s.has(u)&&s.add(u);var f=l.name;f!=null&&!a.has(f)&&a.add(f)},this),this._sources=s,this._names=a,t.sources.forEach(function(l){var c=t.sourceContentFor(l);c!=null&&(r!=null&&(l=Er.join(r,l)),i!=null&&(l=Er.relative(i,l)),this.setSourceContent(l,c))},this)};Na.prototype._validateMapping=function(t,o,r,n){if(o&&typeof o.line!="number"&&typeof o.column!="number"){var i="original.line and original.column are not numbers -- you probably meant to omit the original mapping entirely and only map the generated position. If so, pass null for the original mapping instead of an object with empty or null values.";if(this._ignoreInvalidMapping)return typeof console<"u"&&console.warn&&console.warn(i),!1;throw new Error(i)}if(!(t&&"line"in t&&"column"in t&&t.line>0&&t.column>=0&&!o&&!r&&!n)){if(t&&"line"in t&&"column"in t&&o&&"line"in o&&"column"in o&&t.line>0&&t.column>=0&&o.line>0&&o.column>=0&&r)return;var i="Invalid mapping: "+JSON.stringify({generated:t,source:r,original:o,name:n});if(this._ignoreInvalidMapping)return typeof console<"u"&&console.warn&&console.warn(i),!1;throw new Error(i)}};Na.prototype._serializeMappings=function(){for(var t=0,o=1,r=0,n=0,i=0,s=0,a="",l,c,u,f,p=this._mappings.toArray(),d=0,m=p.length;d<m;d++){if(c=p[d],l="",c.generatedLine!==o){t=0;var y=c.generatedLine-o;l+=y===1?";":";".repeat(y),o=c.generatedLine}else if(d>0){if(!Er.compareByGeneratedPositionsInflated(c,p[d-1]))continue;l+=","}l+=sv.encode(c.generatedColumn-t),t=c.generatedColumn,c.source!=null&&(f=this._sources.indexOf(c.source),l+=sv.encode(f-s),s=f,l+=sv.encode(c.originalLine-1-n),n=c.originalLine-1,l+=sv.encode(c.originalColumn-r),r=c.originalColumn,c.name!=null&&(u=this._names.indexOf(c.name),l+=sv.encode(u-i),i=u)),a+=l}return a};Na.prototype._generateSourcesContent=function(t,o){return t.map(function(r){if(!this._sourcesContents)return null;o!=null&&(r=Er.relative(o,r));var n=Er.toSetString(r);return Object.prototype.hasOwnProperty.call(this._sourcesContents,n)?this._sourcesContents[n]:null},this)};Na.prototype.toJSON=function(){var t={version:this._version,sources:this._sources.toArray(),names:this._names.toArray(),mappings:this._serializeMappings()};return this._file!=null&&(t.file=this._file),this._sourceRoot!=null&&(t.sourceRoot=this._sourceRoot),this._sourcesContents&&(t.sourcesContent=this._generateSourcesContent(t.sources,t.sourceRoot)),t};Na.prototype.toString=function(){return JSON.stringify(this.toJSON())};rue.SourceMapGenerator=Na});var nue=Bo(sm=>{sm.GREATEST_LOWER_BOUND=1;sm.LEAST_UPPER_BOUND=2;function TU(e,t,o,r,n,i){var s=Math.floor((t-e)/2)+e,a=n(o,r[s],!0);return a===0?s:a>0?t-s>1?TU(s,t,o,r,n,i):i==sm.LEAST_UPPER_BOUND?t<r.length?t:-1:s:s-e>1?TU(e,s,o,r,n,i):i==sm.LEAST_UPPER_BOUND?s:e<0?-1:e}sm.search=function(t,o,r,n){if(o.length===0)return-1;var i=TU(-1,o.length,t,o,r,n||sm.GREATEST_LOWER_BOUND);if(i<0)return-1;for(;i-1>=0&&r(o[i],o[i-1],!0)===0;)--i;return i}});var lue=Bo(aue=>{function sue(e){function t(n,i,s){var a=n[i];n[i]=n[s],n[s]=a}function o(n,i){return Math.round(n+Math.random()*(i-n))}function r(n,i,s,a){if(s<a){var l=o(s,a),c=s-1;t(n,l,a);for(var u=n[a],f=s;f<a;f++)i(n[f],u,!1)<=0&&(c+=1,t(n,c,f));t(n,c+1,f);var p=c+1;r(n,i,s,p-1),r(n,i,p+1,a)}}return r}function v3e(e){let t=sue.toString();return new Function(`return ${t}`)()(e)}var E3e=(function(){try{return new Function("return 0")(),!0}catch{return!1}})(),iue=new WeakMap;aue.quickSort=function(e,t,o=0){let r=E3e?iue.get(t):sue(t);r===void 0&&(r=v3e(t),iue.set(t,r)),r(e,t,o,e.length-1)}});var pue=Bo(e_=>{var Fe=Ny(),wU=nue(),Ly=vU().ArraySet,T3e=yU(),av=lue().quickSort,Z1=1e7;function Go(e,t){var o=e;return typeof e=="string"&&(o=Fe.parseSourceMapInput(e)),o.sections!=null?new _l(o,t):new _n(o,t)}Go.fromSourceMap=function(e,t){return _n.fromSourceMap(e,t)};Go.prototype._version=3;Go.prototype.__generatedMappings=null;Object.defineProperty(Go.prototype,"_generatedMappings",{configurable:!0,enumerable:!0,get:function(){return this.__generatedMappings||this._parseMappings(this._mappings,this.sourceRoot),this.__generatedMappings}});Go.prototype.__originalMappings=null;Object.defineProperty(Go.prototype,"_originalMappings",{configurable:!0,enumerable:!0,get:function(){return this.__originalMappings||this._parseMappings(this._mappings,this.sourceRoot),this.__originalMappings}});Go.prototype._charIsMappingSeparator=function(t,o){var r=t.charAt(o);return r===";"||r===","};Go.prototype._parseMappings=function(t,o){throw new Error("Subclasses must implement _parseMappings")};Go.GENERATED_ORDER=1;Go.ORIGINAL_ORDER=2;Go.GREATEST_LOWER_BOUND=1;Go.LEAST_UPPER_BOUND=2;Go.prototype.eachMapping=function(t,o,r){var n=o||null,i=r||Go.GENERATED_ORDER,s;switch(i){case Go.GENERATED_ORDER:s=this._generatedMappings;break;case Go.ORIGINAL_ORDER:s=this._originalMappings;break;default:throw new Error("Unknown order of iteration.")}for(var a=this.sourceRoot,l=t.bind(n),c=this._names,u=this._sources,f=this._sourceMapURL,p=0,d=s.length;p<d;p++){var m=s[p],y=m.source===null?null:u.at(m.source);y!==null&&(y=Fe.computeSourceURL(a,y,f)),l({source:y,generatedLine:m.generatedLine,generatedColumn:m.generatedColumn,originalLine:m.originalLine,originalColumn:m.originalColumn,name:m.name===null?null:c.at(m.name)})}};Go.prototype.allGeneratedPositionsFor=function(t){var o=Fe.getArg(t,"line"),r={source:Fe.getArg(t,"source"),originalLine:o,originalColumn:Fe.getArg(t,"column",0)};if(r.source=this._findSourceIndex(r.source),r.source<0)return[];var n=[],i=this._findMapping(r,this._originalMappings,"originalLine","originalColumn",Fe.compareByOriginalPositions,wU.LEAST_UPPER_BOUND);if(i>=0){var s=this._originalMappings[i];if(t.column===void 0)for(var a=s.originalLine;s&&s.originalLine===a;)n.push({line:Fe.getArg(s,"generatedLine",null),column:Fe.getArg(s,"generatedColumn",null),lastColumn:Fe.getArg(s,"lastGeneratedColumn",null)}),s=this._originalMappings[++i];else for(var l=s.originalColumn;s&&s.originalLine===o&&s.originalColumn==l;)n.push({line:Fe.getArg(s,"generatedLine",null),column:Fe.getArg(s,"generatedColumn",null),lastColumn:Fe.getArg(s,"lastGeneratedColumn",null)}),s=this._originalMappings[++i]}return n};e_.SourceMapConsumer=Go;function _n(e,t){var o=e;typeof e=="string"&&(o=Fe.parseSourceMapInput(e));var r=Fe.getArg(o,"version"),n=Fe.getArg(o,"sources"),i=Fe.getArg(o,"names",[]),s=Fe.getArg(o,"sourceRoot",null),a=Fe.getArg(o,"sourcesContent",null),l=Fe.getArg(o,"mappings"),c=Fe.getArg(o,"file",null);if(r!=this._version)throw new Error("Unsupported version: "+r);s&&(s=Fe.normalize(s)),n=n.map(String).map(Fe.normalize).map(function(u){return s&&Fe.isAbsolute(s)&&Fe.isAbsolute(u)?Fe.relative(s,u):u}),this._names=Ly.fromArray(i.map(String),!0),this._sources=Ly.fromArray(n,!0),this._absoluteSources=this._sources.toArray().map(function(u){return Fe.computeSourceURL(s,u,t)}),this.sourceRoot=s,this.sourcesContent=a,this._mappings=l,this._sourceMapURL=t,this.file=c}_n.prototype=Object.create(Go.prototype);_n.prototype.consumer=Go;_n.prototype._findSourceIndex=function(e){var t=e;if(this.sourceRoot!=null&&(t=Fe.relative(this.sourceRoot,t)),this._sources.has(t))return this._sources.indexOf(t);var o;for(o=0;o<this._absoluteSources.length;++o)if(this._absoluteSources[o]==e)return o;return-1};_n.fromSourceMap=function(t,o){var r=Object.create(_n.prototype),n=r._names=Ly.fromArray(t._names.toArray(),!0),i=r._sources=Ly.fromArray(t._sources.toArray(),!0);r.sourceRoot=t._sourceRoot,r.sourcesContent=t._generateSourcesContent(r._sources.toArray(),r.sourceRoot),r.file=t._file,r._sourceMapURL=o,r._absoluteSources=r._sources.toArray().map(function(d){return Fe.computeSourceURL(r.sourceRoot,d,o)});for(var s=t._mappings.toArray().slice(),a=r.__generatedMappings=[],l=r.__originalMappings=[],c=0,u=s.length;c<u;c++){var f=s[c],p=new fue;p.generatedLine=f.generatedLine,p.generatedColumn=f.generatedColumn,f.source&&(p.source=i.indexOf(f.source),p.originalLine=f.originalLine,p.originalColumn=f.originalColumn,f.name&&(p.name=n.indexOf(f.name)),l.push(p)),a.push(p)}return av(r.__originalMappings,Fe.compareByOriginalPositions),r};_n.prototype._version=3;Object.defineProperty(_n.prototype,"sources",{get:function(){return this._absoluteSources.slice()}});function fue(){this.generatedLine=0,this.generatedColumn=0,this.source=null,this.originalLine=null,this.originalColumn=null,this.name=null}var IU=Fe.compareByGeneratedPositionsDeflatedNoLine;function cue(e,t){let o=e.length,r=e.length-t;if(!(r<=1))if(r==2){let n=e[t],i=e[t+1];IU(n,i)>0&&(e[t]=i,e[t+1]=n)}else if(r<20)for(let n=t;n<o;n++)for(let i=n;i>t;i--){let s=e[i-1],a=e[i];if(IU(s,a)<=0)break;e[i-1]=a,e[i]=s}else av(e,IU,t)}_n.prototype._parseMappings=function(t,o){var r=1,n=0,i=0,s=0,a=0,l=0,c=t.length,u=0,f={},p={},d=[],m=[],y,b,h,g,C;let x=0;for(;u<c;)if(t.charAt(u)===";")r++,u++,n=0,cue(m,x),x=m.length;else if(t.charAt(u)===",")u++;else{for(y=new fue,y.generatedLine=r,g=u;g<c&&!this._charIsMappingSeparator(t,g);g++);for(b=t.slice(u,g),h=[];u<g;)T3e.decode(t,u,p),C=p.value,u=p.rest,h.push(C);if(h.length===2)throw new Error("Found a source, but no line and column");if(h.length===3)throw new Error("Found a source and line, but no column");if(y.generatedColumn=n+h[0],n=y.generatedColumn,h.length>1&&(y.source=a+h[1],a+=h[1],y.originalLine=i+h[2],i=y.originalLine,y.originalLine+=1,y.originalColumn=s+h[3],s=y.originalColumn,h.length>4&&(y.name=l+h[4],l+=h[4])),m.push(y),typeof y.originalLine=="number"){let I=y.source;for(;d.length<=I;)d.push(null);d[I]===null&&(d[I]=[]),d[I].push(y)}}cue(m,x),this.__generatedMappings=m;for(var E=0;E<d.length;E++)d[E]!=null&&av(d[E],Fe.compareByOriginalPositionsNoSource);this.__originalMappings=[].concat(...d)};_n.prototype._findMapping=function(t,o,r,n,i,s){if(t[r]<=0)throw new TypeError("Line must be greater than or equal to 1, got "+t[r]);if(t[n]<0)throw new TypeError("Column must be greater than or equal to 0, got "+t[n]);return wU.search(t,o,i,s)};_n.prototype.computeColumnSpans=function(){for(var t=0;t<this._generatedMappings.length;++t){var o=this._generatedMappings[t];if(t+1<this._generatedMappings.length){var r=this._generatedMappings[t+1];if(o.generatedLine===r.generatedLine){o.lastGeneratedColumn=r.generatedColumn-1;continue}}o.lastGeneratedColumn=1/0}};_n.prototype.originalPositionFor=function(t){var o={generatedLine:Fe.getArg(t,"line"),generatedColumn:Fe.getArg(t,"column")},r=this._findMapping(o,this._generatedMappings,"generatedLine","generatedColumn",Fe.compareByGeneratedPositionsDeflated,Fe.getArg(t,"bias",Go.GREATEST_LOWER_BOUND));if(r>=0){var n=this._generatedMappings[r];if(n.generatedLine===o.generatedLine){var i=Fe.getArg(n,"source",null);i!==null&&(i=this._sources.at(i),i=Fe.computeSourceURL(this.sourceRoot,i,this._sourceMapURL));var s=Fe.getArg(n,"name",null);return s!==null&&(s=this._names.at(s)),{source:i,line:Fe.getArg(n,"originalLine",null),column:Fe.getArg(n,"originalColumn",null),name:s}}}return{source:null,line:null,column:null,name:null}};_n.prototype.hasContentsOfAllSources=function(){return this.sourcesContent?this.sourcesContent.length>=this._sources.size()&&!this.sourcesContent.some(function(t){return t==null}):!1};_n.prototype.sourceContentFor=function(t,o){if(!this.sourcesContent)return null;var r=this._findSourceIndex(t);if(r>=0)return this.sourcesContent[r];var n=t;this.sourceRoot!=null&&(n=Fe.relative(this.sourceRoot,n));var i;if(this.sourceRoot!=null&&(i=Fe.urlParse(this.sourceRoot))){var s=n.replace(/^file:\/\//,"");if(i.scheme=="file"&&this._sources.has(s))return this.sourcesContent[this._sources.indexOf(s)];if((!i.path||i.path=="/")&&this._sources.has("/"+n))return this.sourcesContent[this._sources.indexOf("/"+n)]}if(o)return null;throw new Error('"'+n+'" is not in the SourceMap.')};_n.prototype.generatedPositionFor=function(t){var o=Fe.getArg(t,"source");if(o=this._findSourceIndex(o),o<0)return{line:null,column:null,lastColumn:null};var r={source:o,originalLine:Fe.getArg(t,"line"),originalColumn:Fe.getArg(t,"column")},n=this._findMapping(r,this._originalMappings,"originalLine","originalColumn",Fe.compareByOriginalPositions,Fe.getArg(t,"bias",Go.GREATEST_LOWER_BOUND));if(n>=0){var i=this._originalMappings[n];if(i.source===r.source)return{line:Fe.getArg(i,"generatedLine",null),column:Fe.getArg(i,"generatedColumn",null),lastColumn:Fe.getArg(i,"lastGeneratedColumn",null)}}return{line:null,column:null,lastColumn:null}};e_.BasicSourceMapConsumer=_n;function _l(e,t){var o=e;typeof e=="string"&&(o=Fe.parseSourceMapInput(e));var r=Fe.getArg(o,"version"),n=Fe.getArg(o,"sections");if(r!=this._version)throw new Error("Unsupported version: "+r);this._sources=new Ly,this._names=new Ly;var i={line:-1,column:0},s=0;this._sections=n.map(function(a){if(a.url)throw new Error("Support for url field in sections not implemented.");var l=Fe.getArg(a,"offset"),c=Fe.getArg(l,"line"),u=Fe.getArg(l,"column");if(!uue(c)||!uue(u))throw new Error("Section offset line and column must be non-negative integers.");if(c>Z1)throw new Error("Section offset line must not exceed "+Z1+".");if(c<i.line||c===i.line&&u<i.column)throw new Error("Section offsets must be ordered and non-overlapping.");i=l;var f=new Go(Fe.getArg(a,"map"),t),p=c+(f._maxOffsetLine||0);if(p>Z1)throw new Error("Section offset line must not exceed "+Z1+", including offsets of nested sections.");return p>s&&(s=p),{generatedOffset:{generatedLine:c+1,generatedColumn:u+1},consumer:f}}),this._maxOffsetLine=s}function uue(e){return typeof e=="number"&&e>=0&&e<=9007199254740991&&Math.floor(e)===e}_l.prototype=Object.create(Go.prototype);_l.prototype.constructor=Go;_l.prototype._version=3;Object.defineProperty(_l.prototype,"sources",{get:function(){for(var e=[],t=0;t<this._sections.length;t++)for(var o=this._sections[t].consumer.sources,r=0;r<o.length;r++)e.push(o[r]);return e}});_l.prototype.originalPositionFor=function(t){var o={generatedLine:Fe.getArg(t,"line"),generatedColumn:Fe.getArg(t,"column")},r=wU.search(o,this._sections,function(i,s){var a=i.generatedLine-s.generatedOffset.generatedLine;return a||i.generatedColumn-s.generatedOffset.generatedColumn}),n=this._sections[r];return n?n.consumer.originalPositionFor({line:o.generatedLine-(n.generatedOffset.generatedLine-1),column:o.generatedColumn-(n.generatedOffset.generatedLine===o.generatedLine?n.generatedOffset.generatedColumn-1:0),bias:t.bias}):{source:null,line:null,column:null,name:null}};_l.prototype.hasContentsOfAllSources=function(){return this._sections.every(function(t){return t.consumer.hasContentsOfAllSources()})};_l.prototype.sourceContentFor=function(t,o){for(var r=0;r<this._sections.length;r++){var n=this._sections[r],i=n.consumer.sourceContentFor(t,!0);if(i||i==="")return i}if(o)return null;throw new Error('"'+t+'" is not in the SourceMap.')};_l.prototype.generatedPositionFor=function(t){for(var o=0;o<this._sections.length;o++){var r=this._sections[o];if(r.consumer._findSourceIndex(Fe.getArg(t,"source"))!==-1){var n=r.consumer.generatedPositionFor(t);if(n){var i={line:n.line+(r.generatedOffset.generatedLine-1),column:n.column+(r.generatedOffset.generatedLine===n.line?r.generatedOffset.generatedColumn-1:0)};return i}}}return{line:null,column:null}};_l.prototype._parseMappings=function(t,o){this.__generatedMappings=[],this.__originalMappings=[];for(var r=0;r<this._sections.length;r++)for(var n=this._sections[r],i=n.consumer._generatedMappings,s=0;s<i.length;s++){var a=i[s],l=n.consumer._sources.at(a.source);l!==null&&(l=Fe.computeSourceURL(n.consumer.sourceRoot,l,this._sourceMapURL)),this._sources.add(l),l=this._sources.indexOf(l);var c=null;a.name&&(c=n.consumer._names.at(a.name),this._names.add(c),c=this._names.indexOf(c));var u={source:l,generatedLine:a.generatedLine+(n.generatedOffset.generatedLine-1),generatedColumn:a.generatedColumn+(n.generatedOffset.generatedLine===a.generatedLine?n.generatedOffset.generatedColumn-1:0),originalLine:a.originalLine,originalColumn:a.originalColumn,name:c};this.__generatedMappings.push(u),typeof u.originalLine=="number"&&this.__originalMappings.push(u)}av(this.__generatedMappings,Fe.compareByGeneratedPositionsDeflated),av(this.__originalMappings,Fe.compareByOriginalPositions)};e_.IndexedSourceMapConsumer=_l});var Aue=Bo(due=>{var I3e=EU().SourceMapGenerator,t_=Ny(),w3e=/(\r?\n)/,S3e=10,Fy="$$$isSourceNode$$$";function js(e,t,o,r,n){this.children=[],this.sourceContents={},this.line=e??null,this.column=t??null,this.source=o??null,this.name=n??null,this[Fy]=!0,r!=null&&this.add(r)}js.fromStringWithSourceMap=function(t,o,r){var n=new js,i=t.split(w3e),s=0,a=function(){var p=m(),d=m()||"";return p+d;function m(){return s<i.length?i[s++]:void 0}},l=1,c=0,u=null;return o.eachMapping(function(p){if(u!==null)if(l<p.generatedLine)f(u,a()),l++,c=0;else{var d=i[s]||"",m=d.substr(0,p.generatedColumn-c);i[s]=d.substr(p.generatedColumn-c),c=p.generatedColumn,f(u,m),u=p;return}for(;l<p.generatedLine;){if(s>=i.length){l=p.generatedLine;break}n.add(a()),l++}if(c<p.generatedColumn){var d=i[s]||"";n.add(d.substr(0,p.generatedColumn)),i[s]=d.substr(p.generatedColumn),c=p.generatedColumn}u=p},this),s<i.length&&(u&&f(u,a()),n.add(i.splice(s).join(""))),o.sources.forEach(function(p){var d=o.sourceContentFor(p);d!=null&&(r!=null&&(p=t_.join(r,p)),n.setSourceContent(p,d))}),n;function f(p,d){if(p===null||p.source===void 0)n.add(d);else{var m=r?t_.join(r,p.source):p.source;n.add(new js(p.originalLine,p.originalColumn,m,d,p.name))}}};js.prototype.add=function(t){if(Array.isArray(t))t.forEach(function(o){this.add(o)},this);else if(t[Fy]||typeof t=="string")t&&this.children.push(t);else throw new TypeError("Expected a SourceNode, string, or an array of SourceNodes and strings. Got "+t);return this};js.prototype.prepend=function(t){if(Array.isArray(t))for(var o=t.length-1;o>=0;o--)this.prepend(t[o]);else if(t[Fy]||typeof t=="string")this.children.unshift(t);else throw new TypeError("Expected a SourceNode, string, or an array of SourceNodes and strings. Got "+t);return this};js.prototype.walk=function(t){for(var o,r=0,n=this.children.length;r<n;r++)o=this.children[r],o[Fy]?o.walk(t):o!==""&&t(o,{source:this.source,line:this.line,column:this.column,name:this.name})};js.prototype.join=function(t){var o,r,n=this.children.length;if(n>0){for(o=[],r=0;r<n-1;r++)o.push(this.children[r]),o.push(t);o.push(this.children[r]),this.children=o}return this};js.prototype.replaceRight=function(t,o){var r=this.children[this.children.length-1];return r[Fy]?r.replaceRight(t,o):typeof r=="string"?this.children[this.children.length-1]=r.replace(t,o):this.children.push("".replace(t,o)),this};js.prototype.setSourceContent=function(t,o){this.sourceContents[t_.toSetString(t)]=o};js.prototype.walkSourceContents=function(t){for(var o=0,r=this.children.length;o<r;o++)this.children[o][Fy]&&this.children[o].walkSourceContents(t);for(var n=Object.keys(this.sourceContents),o=0,r=n.length;o<r;o++)t(t_.fromSetString(n[o]),this.sourceContents[n[o]])};js.prototype.toString=function(){var t="";return this.walk(function(o){t+=o}),t};js.prototype.toStringWithSourceMap=function(t){var o={code:"",line:1,column:0},r=new I3e(t),n=!1,i=null,s=null,a=null,l=null;return this.walk(function(c,u){o.code+=c,u.source!==null&&u.line!==null&&u.column!==null?((i!==u.source||s!==u.line||a!==u.column||l!==u.name)&&r.addMapping({source:u.source,original:{line:u.line,column:u.column},generated:{line:o.line,column:o.column},name:u.name}),i=u.source,s=u.line,a=u.column,l=u.name,n=!0):n&&(r.addMapping({generated:{line:o.line,column:o.column}}),i=null,n=!1);for(var f=0,p=c.length;f<p;f++)c.charCodeAt(f)===S3e?(o.line++,o.column=0,f+1===p?(i=null,n=!1):n&&r.addMapping({source:u.source,original:{line:u.line,column:u.column},generated:{line:o.line,column:o.column},name:u.name})):o.column++}),this.walkSourceContents(function(c,u){r.setSourceContent(c,u)}),{code:o.code,map:r}};due.SourceNode=js});var mue=Bo(o_=>{o_.SourceMapGenerator=EU().SourceMapGenerator;o_.SourceMapConsumer=pue().SourceMapConsumer;o_.SourceNode=Aue().SourceNode});async function hue(e){let t=await fetch(e);if(!t.ok)throw new Error(`HTTP ${t.status} fetching ${e}: ${await t.text()}`);return t.text()}function R3e(e,t){let o=[...e.matchAll(B3e)].at(-1)?.[1]?.trim(),r;return o&&(r=new URL(o,t),!r.search&&r.protocol!=="data:"&&(r.search=new URL(t).search)),r?.href}async function M3e(e){try{let t=R3e(await hue(e),e);return t?new bue.SourceMapConsumer(JSON.parse(await hue(t))):void 0}catch{return}}function Q3e(e){let t=yue.get(e);if(t)return t;{let o=M3e(e);return yue.set(e,o),o}}function P3e(e){let t=_3e.exec(e);if(!t)return;let o=t.index,r=e.slice(o).replace(/\)$/,""),n=r.lastIndexOf(":"),i=r.lastIndexOf(":",n-1),s=r.slice(i+1,n),a=r.slice(n+1);return i>0&&gue.test(s)&&gue.test(a)?{name:e.slice(0,o).trim().replace(/^at\b\s*/,"").replace(/\s*\($/,"").replace(/@$/,""),uri:r.slice(0,i),line:+s,column:+a}:void 0}async function D3e(e){let t=P3e(e),o=t?await Q3e(t.uri):void 0;if(t&&o){let r=o.originalPositionFor({line:t.line,column:t.column-1}),{source:n,line:i,column:s}=r;return n!==null&&i!==null&&s!==null?`${n}:${i}:${s+1}${t.name?` (${t.name})`:""}`:e}else return e}async function Cue(e){return(await Promise.all(e.split(`
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0,loadWarnings:[],dismissedWarnings:[],resetCount:0,hostCarriesData:!1,annotations:[]})).actions(t=>({drawRelativeTo(o){t.relativeTo=o},setHideGaps(o){t.hideGaps=o},setAllowedGappyness(o){t.allowedGappyness=o},setLoadingMSA(o){t.loadingMSA=o},setLoadingTree(o){t.loadingTree=o},setWidth(o){t.volatileWidth=o},setSettingsOpen(o){t.settingsOpen=o},setHighResScaleFactor(o){t.highResScaleFactor=o},setHeight(o){t.height=o},setError(o){t.error=o},addWarning(o){t.loadWarnings.includes(o)||(t.loadWarnings=[...t.loadWarnings,o])},setHostCarriesData(o){t.hostCarriesData=o},setMousePos(o,r){t.mouseCol=o,t.mouseRow=r},setHighlightedColumns(o){t.highlightedColumns=o},setRegion(o){t.region=o},setHighlights(o){t.highlights.replace(o)},setFeatures(o){t.features.replace(o)},setSelection(o){let r=o&&{start:Math.min(o.start,o.end),end:Math.max(o.start,o.end),...o.rows?{rows:o.rows}:{}};hg(r,t.selection)||(t.selection=r)},clearSelection(){this.setSelection(void 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0),t.scrollX=0,t.scrollY=0})},toggleCollapsed(o){t.collapsed.includes(o)?t.collapsed.remove(o):t.collapsed.push(o)},toggleRotated(o){t.rotated.includes(o)?t.rotated.remove(o):t.rotated.push(o)},clearRotated(){t.rotated.clear()},setTreeRoot(o){hg(t.treeRoot,o)||_r(()=>{t.treeRoot=o,t.collapsed.clear(),t.rotated.clear(),this.setShowOnly(void 0)})},setShowOnly(o){t.showOnly=o},setData(o){t.data=o},setMSAFilehandle(o){t.msaFilehandle=o},setTreeFilehandle(o){t.treeFilehandle=o},setTreeMetadataFilehandle(o){t.treeMetadataFilehandle=o},setGFFFilehandle(o){t.gffFilehandle=o},setMSA(o){t.data.setMSA(o)},setTree(o){t.data.setTree(o)},setTreeMetadata(o){t.data.setTreeMetadata(o)},setGFF(o){t.data.setGFF(o)}})).views(t=>({get hideGapsEffective(){return t.hideGaps&&(t.collapsed.length>0||t.showOnly!==void 0||t.allowedGappyness<100)},get hostRestoresData(){return t.hostCarriesData},get viewInitialized(){return t.volatileWidth!==void 0},get width(){if(t.volatileWidth===void 0)throw new Error("not 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o=oz(ZQ(this.tree,{collapsed:t.collapsed,rotated:t.rotated,order:t.treeOrder}),{rowHeight:1,treeWidth:1});return{root:o.root,numTips:o.leaves.length,maxDepthToLeaf:o.root.depthToLeaf,showBranchLen:t.showBranchLen&&o.rootToTipLength>0}},get treeOverviewClades(){let o=this.treeOverviewLayout;return!o||t.clades.length===0?qEe:PV(t.clades,Jp(this.tree,r=>r.children),o.root)},get treeOverviewFocusRows(){let o=this.treeOverviewLayout;if(!o||!t.showOnly)return;let r=tf(o.root,n=>n.data.id===t.showOnly);return r?OV(r):void 0},treeOverviewHit(o){let r=this.treeOverviewLayout;if(!r)return;let{root:n,numTips:i}=r,s=i/t.overviewHeight,a=dr(Math.floor(o*s),0,i-1),l=dr(Math.ceil((o+1)*s)-1,a,i-1),c=YR(n,a+.5,l+.5);for(;!c.children&&c.parent;)c=c.parent;return c===n?void 0:{id:c.data.id,rows:OV(c)}},get rowPanelsWidth(){return _0(t.rowPanels.map(o=>bV(o,t)))},get rowPanelsHeaderHeight(){return t.rowPanels.length>0?iR:0},get msaAreaWidth(){return t.width-this.effectiveTreeAreaWidth-this.rowPanelsWidth-t.resizeHandleWidth},get treeAreaWidthMinusMargin(){return this.effectiveTreeAreaWidth-t.marginLeft-this.cladeGutterWidth},get blanks(){let{hideGapsEffective:o,allowedGappyness:r}=t;if(!o)return[];let n=this.leaves.map(u=>this.MSA?.getRow(u.data.name)).filter(Oa);if(n.length===0)return[];let i=this.MSA?.getWidth()??0,s=n.length,a=Math.ceil(r/100*s),l=new Uint32Array(i);for(let u=0;u<s;u++){let f=n[u],p=f.length;for(let d=0;d<i;d++)(d>=p||f.charCodeAt(d)-45>>>0<=1)&&l[d]++}let c=[];for(let u=0;u<i;u++)l[u]>=a&&c.push(u);return c},get insertionPositions(){let{blanks:o,rows:r}=this;if(o.length===0)return new Map;let n=new Map;for(let[i,s]of r){let a=lAe(o,s);a.length>0&&n.set(i,a)}return n},get rows(){let o=this.MSA;return this.leaves.map(r=>[r.data.name,o?.getRow(r.data.name)]).filter(r=>!!r[1])},get numRows(){return this.leaves.length},seqPosIndex(o){let r=this.MSA;if(!r)return;let n=KEe.get(r);n||(n=new Map,KEe.set(r,n));let i=n.get(o);if(!i){let s=r.getRow(o);if(!s)return;i=yEe(s),n.set(o,i)}return i},rowSequence(o){return this.MSA?.getRow(o)||void 0},get rowMap(){let o=this.MSA;return new Map(o?.getNames().map(r=>[r,o.getRow(r)]).filter(([,r])=>!!r))},get columns(){let o=this.columns2d;return new Map(this.rows.map((r,n)=>[r[0],o[n]]))},get columns2d(){let{hideGapsEffective:o}=t;return this.rows.map(([,r])=>(o?V_(this.blanks,r):r).toUpperCase())},get fontSize(){return z3(t.rowHeight)},get colStats(){return Hde(this.columns2d,this.numColumns)},get sequenceType(){let o=this.colStats.lettersPresent,r=["N","R","Y","K","M","S","W"],n=new Set(["A","C","G","T",...r]),i=new Set(["A","C","G","U",...r]),s=o.size>0&&[...o].every(l=>n.has(l)),a=o.size>0&&[...o].every(l=>i.has(l));return s?"dna":a?"rna":"amino"},get colConsensus(){let{colStats:o}=this;return Array.from({length:o.numColumns},(r,n)=>{let i=o.total(n),s=0,a="";o.forEachResidue(n,(c,u)=>{u>s&&(s=u,a=gm(c))});let l=i?s/i:0;return{letter:a,color:l>.4?`hsl(240, 30%, ${100*Math.max(1-l/3,.3)}%)`:void 0}})},get colClustalX(){let{colStats:o}=this;return Array.from({length:o.numColumns},(r,n)=>Rve(o,n))},get colSimilarity(){let{colStats:o,sequenceType:r}=this,n=r==="amino"?EEe:TEe;return Array.from({length:o.numColumns},(i,s)=>n(o,s))},get conservation(){let{colStats:o,alphabetMaxBits:r}=this;return Array.from({length:o.numColumns},(n,i)=>{let s=o.total(i),a=o.gapCount(i);return s>a?Math.max(0,1-o.entropy(i)/r)*(1-a/s):0})},get alphabetMaxBits(){return Gde(this.sequenceType)},get propertyConservation(){return this.sequenceType==="amino"?sEe(this.colStats):[]},get treeLayout(){let o=()=>this.effectiveTreeWidth;return oz(this.root,{get rowHeight(){return t.rowHeight},get treeWidth(){return o()}})},get hierarchy(){return this.treeLayout.root},get totalHeight(){return this.leaves.length*t.rowHeight},get leaves(){return this.treeLayout.leaves},get rootToTipLength(){return this.treeLayout.rootToTipLength},get pxPerBranchLength(){let o=this.rootToTipLength;return this.showBranchLenEffective&&o?this.effectiveTreeWidth/o:0},get maxDepthToLeaf(){return this.treeLayout.root.depthToLeaf},get allBranchesLength0(){return this.rootToTipLength===0},get showBranchLenEffective(){return this.allBranchesLength0?!1:t.showBranchLen}})).views(t=>({get totalWidth(){return t.numColumns*t.colWidth}})).views(t=>({get showMsaLetters(){return t.drawMsaLetters&&t.rowHeight>=U3&&t.colWidth>=VAe&&t.colWidth>t.rowHeight/2}})).views(t=>{let o=new WeakMap;return{get columnTrackContent(){let{MSA:r,blanks:n,hideGapsEffective:i}=t,s=r?.getWidth()??0,a=(u,f,p)=>{if(!u.row)return f;let d=Array.from({length:s},()=>p),m=t.seqPosIndex(u.row);return f.forEach((y,b)=>{let h=m?.[b];h!==void 0&&(d[h]=y)}),d},l=u=>i?aAe(n,u):u,c=(u,f)=>{let p=u.row?t.seqPosIndex(u.row)?.[f-1]:f-1;if(!(p===void 0||p<0||p>=s))return i?gC(n,p):p};return new Map(t.columnTracks.map(u=>{if(u.kind==="arc"){let p=(u.arcs??[]).map(d=>{let m=c(u,Math.min(d.start,d.end)),y=c(u,Math.max(d.start,d.end));return m!==void 0&&y!==void 0&&m<y?{start:m,end:y,color:d.color}:void 0}).filter(Oa);return[u.id,{arcs:p}]}if(u.kind==="bar"){let p=u.scales?.y?.domainMax??1,d=l(a(u,u.values??[],0)).map(m=>Math.min(1,Math.max(0,m/p)));return[u.id,{values:d}]}let f=l(a(u,(u.data??"").split("")," "));return[u.id,{data:f.join("")}]}))},trackHeight(r,n=r,i){return t.trackHeights.get(n)??i??a7e[r]??t.rowHeight},columnTrackModel(r){let n=o.get(r);return n||(n=Nf(()=>{let i=jEe.has(r.kind)?l7e(r.id):void 0,s=this.columnTrackContent.get(r.id);return{model:{id:r.id,name:r.name,kind:r.kind,heightKey:i,height:this.trackHeight(r.kind,i,r.height),barColor:r.color,arcColor:r.color,customColorScheme:r.encoding?.color?RV(r.encoding.color,[...r.encoding.color.domain??[],...new Set(r.data)]):void 0,data:s?.data,arcs:s?.arcs}}}),o.set(r,n)),n.get()},get columnTrackModels(){return t.columnTracks.map(r=>this.columnTrackModel(r))}}}).views(t=>({get secondaryStructureConsensus(){return t.MSA?.secondaryStructureConsensus},get secondaryStructureArcs(){let{blanks:o,hideGapsEffective:r}=t,n=this.secondaryStructureConsensus;if(n)return DEe(r?V_(o,n):n).map(({start:i,end:s,pseudoknot:a})=>({start:i,end:s,color:a?u7e:c7e}))},get adapterTrackModels(){let{MSA:o,hideGapsEffective:r,blanks:n}=t,i=(o?.tracks??[]).filter(a=>!!a.data);if(i.length===0)return[];let{rowHeight:s}=t;return i.map(a=>({model:{...a,kind:"text",data:r?V_(n,a.data):a.data,height:s}}))},get basePairTrackModels(){let o=this.secondaryStructureArcs;return o?.length?[{model:{id:"base-pairs",name:"Base pairs",kind:"arc",heightKey:"arc",height:t.trackHeight("arc"),arcs:o}}]:[]},get computedTrackModels(){return[{id:"conservation",name:"Conservation",kind:"bar",barColor:"gray"},...t.sequenceType==="amino"?[{id:"property-conservation",name:"Property conservation",kind:"bar",barColor:"#6a51a3"}]:[],{id:"sequence-logo",name:"Sequence logo",kind:"logo"},{id:"position-ruler",name:"Position",kind:"ruler"}].map(o=>({model:{...o,heightKey:jEe.has(o.kind)?o.kind:void 0,height:t.trackHeight(o.kind)}}))},get referenceTrackModels(){let{relativeTo:o}=t,r=o===void 0?void 0:t.columns.get(o);return o===void 0||r===void 0?[]:[{model:{id:"reference-row",name:o,kind:"reference",data:r,height:t.rowHeight}}]},get tracks(){return[...this.adapterTrackModels,...this.basePairTrackModels,...t.columnTrackModels,...t.numColumns>0?this.computedTrackModels:[],...this.referenceTrackModels]},get turnedOnTracks(){return this.tracks.filter(o=>!YEe(t.turnedOffTracks,o.model.id))},get showHorizontalScrollbar(){return eTe(t.totalWidth,t.msaAreaWidth)},visibleColToRowLetter(o,r){return t.rowSequence(o)?.[this.visibleColToGlobalCol(r)]},visibleColToSeqPos(o,r){return pEe(t.seqPosIndex(o),this.visibleColToGlobalCol(r))},visibleColToSeqPosOneBased(o,r){let n=this.visibleColToSeqPos(o,r);return n!==void 0?n+1:void 0},globalColToVisibleCol(o){let{blanks:r,hideGapsEffective:n}=t;return n?uEe(r,o):o},visibleColToGlobalCol(o){let{blanks:r,hideGapsEffective:n}=t;return n?cEe(r,o):o},seqPosToGlobalCol(o,r){let n=t.rowSequence(o);return n===void 0?void 0:t.seqPosIndex(o)?.[r]??(r===0?0:n.length)},seqEndToGlobalCol(o,r){let n=t.seqPosIndex(o);return n&&n.length>0?n[Math.min(r,n.length-1)]:void 0},seqPosToVisibleCol(o,r){let n=this.seqPosToGlobalCol(o,r);return n===void 0?void 0:this.globalColToVisibleCol(n)},visibleSpan({row:o,start:r,end:n}){let{blanks:i}=t,s=Math.max(1,Math.floor(r)),a=Math.ceil(n),l=s-1,c=Math.min(a,t.MSA?.getWidth()??a)-1;if(o!==void 0){let p=this.seqPosToGlobalCol(o,s-1),d=this.seqEndToGlobalCol(o,a-1);if(p===void 0||d===void 0)return;l=p,c=d}let u=this.globalColToVisibleCol(l)??gC(i,l),f=this.globalColToVisibleCol(c)??gC(i,c)-1;return u<=f?{startCol:u,endCol:f}:void 0},get residueMappingProblems(){let o=[];for(let r of t.residueMappings){let n={row:r.row,structureId:r.structure.id},i=t.seqPosIndex(r.row)?.length;if(i===void 0){o.push({...n,scope:"mapping",reason:"no such row in the alignment"});continue}if(r.rowLength!==void 0&&r.rowLength!==i){o.push({...n,scope:"mapping",reason:`computed against a ${r.rowLength}-residue row; this one has ${i}`});continue}let s=r.segments.find(a=>a.rowEnd>i||a.rowStart<1);if(s){o.push({...n,scope:"mapping",reason:`segment ${s.rowStart}-${s.rowEnd} does not fit a ${i}-residue row`});continue}for(let a of r.segments)XEe(a)||o.push({...n,scope:"segment",reason:`segment ${a.rowStart}-${a.rowEnd} maps to ${a.structStart}-${a.structEnd}, which is a different length`})}return o},get usableResidueMappings(){let o=new Set(this.residueMappingProblems.filter(r=>r.scope==="mapping").map(r=>`${r.row}\0${r.structureId}`));return t.residueMappings.filter(r=>!o.has(`${r.row}\0${r.structure.id}`)).map(r=>({...r,segments:r.segments.filter(XEe)}))},get mappedStructures(){return this.usableResidueMappings.map(o=>({row:o.row,structure:o.structure}))},structureResidue(o,r,n){let i=[];for(let s of this.usableResidueMappings){if(s.row!==o||n!==void 0&&s.structure.id!==n)continue;let a=s.segments.find(l=>r>=l.rowStart&&r<=l.rowEnd);if(a){let l=a.structStart+(r-a.rowStart);i.push({structure:s.structure,position:l,observed:!m7e(s.unobserved,l)})}}return i.length===1?i[0]:void 0},rowResidue(o,r,n){let i=[];for(let s of this.usableResidueMappings){if(s.structure.id!==o||n!==void 0&&s.structure.asymId!==void 0&&s.structure.asymId!==n)continue;let a=s.segments.find(l=>r>=l.structStart&&r<=l.structEnd);a&&i.push({rowName:s.row,seqPos:a.rowStart+(r-a.structStart)})}return i.length===1?i[0]:void 0}})).views(t=>({get treeScaleBar(){return Ove(t.pxPerBranchLength,t.effectiveTreeAreaWidth-t.marginLeft*2)},get topBandHeight(){return Math.max(t.showHorizontalScrollbar?t.minimapHeight:0,t.rowPanelsHeaderHeight,t.treeOverviewHeight+(this.treeScaleBar?Zu:0))},get msaAreaHeight(){return t.height-this.topBandHeight-t.headerHeight-this.totalTrackAreaHeight},get totalTrackAreaHeight(){return _0(t.turnedOnTracks.map(o=>o.model.height))},get annotationTypes(){let o=new Map;for(let r of t.allAnnotations)o.has(r.accession)||o.set(r.accession,r);return o},get defaultOffAccessions(){return new Set(t.allAnnotations.filter(o=>o.defaultOff).map(o=>o.accession))},featureOff(o){return t.turnedOffFeatures.get(o)??this.defaultOffAccessions.has(o)},get filteredAnnotations(){return t.allAnnotations.filter(o=>!this.featureOff(o.accession))},get cellFill(){return t.bgColor?t.actuallyShowDomains&&t.domainFill&&this.filteredAnnotations.length>0?"domain":"residue":"none"},get annotationsByRow(){let{rowNamesSet:o}=t;return ele(this.filteredAnnotations,r=>JEe(r.id,o))}})).views(t=>({get showVerticalScrollbar(){return eTe(t.totalHeight,t.msaAreaHeight)}})).views(t=>({get dataInitialized(){return!!(t.data.msa||t.data.tree)&&!t.error},get blocksX(){return Xv({viewportSize:t.msaAreaWidth,viewportPos:-t.scrollX,blockSize:t.blockSize,mapSize:t.totalWidth})},get blocksY(){return Xv({viewportSize:t.msaAreaHeight,viewportPos:-t.scrollY,blockSize:t.blockSize,mapSize:t.totalHeight})}})).views(t=>({get verticalScrollbarWidth(){return t.showVerticalScrollbar?20:0},get msaCanvasWidth(){return t.msaAreaWidth-this.verticalScrollbarWidth},get maxScrollX(){return Math.min(-t.totalWidth+this.msaCanvasWidth,0)},get blocks2d(){return t.blocksY.flatMap(o=>t.blocksX.map(r=>[r,o]))},get wheelZooming(){return t.zoomSnapshot!==void 0},get isLoading(){return t.loadingMSA||t.loadingTree},get dataWarnings(){let{annotations:o,rowNamesSet:r}=t;return t.dataInitialized&&o.length>0&&!o.some(n=>r.has(JEe(n.id,r)))?[`0 of ${o.length} annotations name a row in this alignment`]:[]},get warnings(){return[...t.loadWarnings,...this.dataWarnings.filter(o=>!t.dismissedWarnings.includes(o))]},get maxScrollY(){return Math.min(-t.totalHeight+t.msaAreaHeight,0)},get wheelZoomAxis(){return t.scrollZoom?t.scrollZoomAxis:"both"}})).actions(t=>({setDrawMsaLetters(o){t.drawMsaLetters=o},clearWarnings(){t.loadWarnings=[],t.dismissedWarnings=t.dataWarnings},setScrollZoom(o){t.scrollZoom=o},setScrollZoomAxis(o){t.scrollZoomAxis=o},setHoveredTreeNode(o){if(o===t.hoveredTreeNode?.nodeId)return;if(!o){t.hoveredTreeNode=void 0;return}let r=tf(t.hierarchy,n=>n.data.id===o);t.hoveredTreeNode=r?{nodeId:o,descendantNames:Qc(r).map(n=>n.data.name)}:void 0},calculateNeighborJoiningTreeFromMSA(){let o=[...t.rowMap];if(o.length<2)throw new Error("Need at least 2 sequences to build a tree");if(o.length>sb)throw new Error(`Neighbor joining here is capped at ${sb} sequences and this alignment has ${o.length}. Build the tree with FastTree or IQ-TREE and open it alongside the alignment: https://gmod.org/JBrowseMSA/tutorials/protein_family`);this.replaceTree(rEe(o))},rerootAt(o){let r=tf(Jp(t.tree,i=>i.children),i=>i.data.id===o);if(!r?.parent)return;let n=DV(Jp(t.inputTree,i=>i.children),Qc(r).map(i=>i.data.name));if(n){let i=Qc(n);t.setTreeRoot({outgroup:[...new Set([i[0].data.name,i.at(-1).data.name])]})}},replaceTree(o){_r(()=>{t.setTreeFilehandle(void 0),t.collapsed.clear(),t.rotated.clear(),t.setShowOnly(void 0),t.setTree(o)})},resetZoom(){t.setColWidth(12),t.setRowHeight(16)},zoomAtCenter(o,r="both"){this.zoomToPos(o,t.msaCanvasWidth/2,t.msaAreaHeight/2,r)},zoomIn(){this.zoomAtCenter(1.5)},zoomOut(){this.zoomAtCenter(.75)},zoomToPos(o,r,n,i="both"){_r(()=>{let s=(-t.scrollX+r)/t.colWidth,a=(-t.scrollY+n)/t.rowHeight,l=i!=="both"||t.colWidth===12&&t.rowHeight===16;if(i!=="vertical"){let{value:d,held:m}=ZEe(t.colWidth,o,12,t.zoomHeld.col,X_,l);t.colWidth=d,t.zoomHeld={...t.zoomHeld,col:m}}if(i!=="horizontal"){let{value:d,held:m}=ZEe(t.rowHeight,o,16,t.zoomHeld.row,Z_,l);t.rowHeight=d,t.zoomHeld={...t.zoomHeld,row:m}}t.scrollX=dr(r-s*t.colWidth,t.maxScrollX,0);let c=n-a*t.rowHeight,u=Math.max(0,-t.maxScrollY),f=t.totalHeight-u,p=f>0?dr(1-u/f,0,1):1;t.scrollY=dr(c*(1-p),t.maxScrollY,0)})},wheelZoomToPos(o,r,n){t.zoomSnapshot??=L4(t,!1),this.zoomToPos(o,r,n,t.wheelZoomAxis),Ahe(t,t.zoomSnapshot)||(t.zoomSnapshot=L4(t,!0))},endWheelZoom(){t.zoomSnapshot=void 0},doScrollY(o){this.setScrollY(t.scrollY+o)},setScrollY(o){t.scrollY=dr(o,t.maxScrollY,0)},setAnnotations(o){t.annotations=o},applyGFFText(o){this.setAnnotations(mR(AR(o)))},doScrollX(o){this.setScrollX(t.scrollX+o)},setScrollX(o){t.scrollX=dr(o,t.maxScrollX,0)},setColumnTracks(o){t.columnTracks.replace(o.map(_V))},setRowData(o){t.data.setTreeMetadata(JSON.stringify(o))},setEncodings(o){t.encodings.replace(o.map(SV))},setRowPanels(o){t.rowPanels.replace(o.map(BV))},setResidueMappings(o){t.residueMappings.replace(o)},toggleTrack(o){t.turnedOffTracks.set(o,!YEe(t.turnedOffTracks,o))},setTracksShown(o,r){for(let n of o)oTe.has(n)===!r?t.turnedOffTracks.delete(n):t.turnedOffTracks.set(n,!r)},setStatus(o){t.status=o}})).views(t=>({cellAt(o,r){let n=t.visibleColToGlobalCol(o),i=r===void 0?void 0:t.leaves[r]?.data.name;return i===void 0?{column:n+1}:{column:n+1,row:i,residue:t.visibleColToSeqPosOneBased(i,o),letter:t.rowSequence(i)?.[n]}},get hoveredCell(){let{mouseCol:o,mouseRow:r}=t;return o===void 0?void 0:this.cellAt(o,r)},get clickedCell(){let{mouseClickCol:o,mouseClickRow:r}=t;return o===void 0?void 0:this.cellAt(o,r)},get viewport(){let{scrollX:o,colWidth:r,numColumns:n,viewInitialized:i}=t;if(n===0||!i)return;let{xStart:s,xEnd:a}=Fa({offsetX:-o,blockWidth:t.msaCanvasWidth,colWidth:r}),l=Math.max(0,Math.min(a,n)-1);return{startColumn:t.visibleColToGlobalCol(Math.min(s,l))+1,endColumn:t.visibleColToGlobalCol(l)+1}},get segmentDomainTypes(){return[...t.annotationTypes.values()].filter(o=>L3.has(o.featureType??"")).toSorted((o,r)=>o.start-r.start)},get categoricalDomainTypes(){return[...t.annotationTypes.values()].filter(o=>!L3.has(o.featureType??""))},get fillPalette(){let o=Object.fromEntries(this.segmentDomainTypes.map((n,i)=>[n.accession,F3[i%F3.length]])),r=n=>this.categoricalDomainTypes.filter(i=>NAe(i.featureType)===n).map(i=>i.accession);return{...o,...uT(r(!1),LAe,85),...uT(r(!0),FAe,45)}},get featureFillEncoding(){return this.resolvedEncodings.find(o=>o.channel==="featureFill")},get featureColors(){return CV(t.filteredAnnotations,this.featureFillEncoding,this.fillPalette)},get featureLabels(){let o=this.resolvedEncodings.find(r=>r.channel==="featureLabel");return o?xV(t.filteredAnnotations,o.field):void 0},get segmentLabels(){return new Map(this.segmentDomainTypes.map((o,r)=>{let n=/(\d+)\s*$/.exec(o.name);return[o.accession,n?n[1]:`${r+1}`]}))},get visibleDomainTypes(){return this.categoricalDomainTypes.filter(o=>!t.featureOff(o.accession)).toSorted((o,r)=>o.start-r.start)},get legends(){let{featureFillEncoding:o,fillPalette:r,visibleDomainTypes:n}=this,i=new Map,s=new Set,a=(l,c,u,f=!1)=>{let p=l??"domains";if(u.length===0||i.has(p))return;let d=f||l===void 0?"domains":`rowData-${c}`,m=d;for(let y=2;s.has(m);y++)m=`${d}-${y}`;s.add(m),i.set(p,{id:m,title:c??"Domains",entries:u})};t.actuallyShowDomains&&t.numColumns>0&&a(o?.key,o?.title,o?o.legend:n.map(l=>({id:l.accession,label:l.name,color:l.color??r[l.accession]})),!0);for(let{channel:l,key:c,title:u,legend:f}of this.resolvedEncodings)FV.has(l)||a(c,u,f);for(let{legendKey:l,legendTitle:c,legend:u}of this.rowPanelScales)a(l,c,u);return[...i.values()]},get domainUnderline(){return t.actuallyShowDomains&&t.cellFill!=="domain"&&!t.subFeatureRows&&t.showMsaLetters},get domainBands(){let{blanks:o}=t,r=new Map;for(let[n,i]of Object.entries(t.annotationsByRow)){let s=i.toSorted((a,l)=>B3(l)-B3(a)).map(a=>{let l=t.seqPosToGlobalCol(n,a.start-1),c=t.seqEndToGlobalCol(n,a.end-1);if(l===void 0||c===void 0)return;let u=gC(o,l),f=gC(o,c+1);return f>u?{annotation:a,startCol:u,endCol:f}:void 0}).filter(Oa).map((a,l)=>({...a,stackIndex:l}));s.length>0&&r.set(n,fC(s))}return r},get domainBandsByStart(){return new Map([...this.domainBands].map(([o,r])=>[o,r.toSorted((n,i)=>n.startCol-i.startCol)]))},get mouseOverDomains(){let{mouseCol:o}=t,r=t.mouseOverRowName;if(r===void 0||o===void 0)return WEe;let n=(this.domainBands.get(r)??[]).filter(i=>o>=i.startCol&&o<i.endCol).map(i=>i.annotation);return n.length>0?n:WEe},get referenceRowIndex(){let{relativeTo:o}=t;return o===void 0?void 0:t.rowNamesSet.get(o)},get hoveredRowIndices(){let{hoveredTreeNode:o,rowNamesSet:r}=t;return o?o.descendantNames.map(n=>r.get(n)).filter(Oa):[]},get highlightedColumnRuns(){return tTe([...t.highlightedColumns??[]].sort((o,r)=>o-r)).map(([o,r])=>({start:o,end:r}))},fillHighlightLabel(o,r,n){if(!o.includes("{"))return o;let i=r&&n!==void 0?t.seqPosIndex(r)?.[n-1]:void 0,s=r&&i!==void 0?t.MSA?.getRow(r)[i]??"":"";return o.replaceAll("{residue}",s).replaceAll("{position}",n===void 0?"":String(n))},get resolvedHighlights(){let{rowNamesSet:o,transientHighlights:r}=t;return[...t.highlights,...Object.values(r).flat()].flatMap(({row:i,rows:s,start:a,end:l,label:c,color:u})=>{let f={label:c&&this.fillHighlightLabel(c,i,a),color:u};if(s){let d=s.map(m=>o.get(m)).filter(Oa);return d.length?[{...f,rowIndices:d}]:[]}if(a===void 0||l===void 0)return[];let p=t.visibleSpan({row:i,start:a,end:l});return p?[{...f,...p,rowIndices:[]}]:[]})},get resolvedSelection(){let{selection:o,rowNamesSet:r,numRows:n}=t,i=o&&t.visibleSpan({start:o.start,end:o.end});if(!o||!i)return;let s=o.rows?tTe(o.rows.map(a=>r.get(a)).filter(Oa).sort((a,l)=>a-l)):n>0?[[0,n-1]]:[];return s.length>0?{...i,rowRuns:s}:void 0},get selectionSize(){let o=this.resolvedSelection,r=this.selectionFileSpan;return o&&r?{columns:r.end-r.start+1,rows:_0(o.rowRuns.map(([n,i])=>i-n+1))}:void 0},get selectionFileSpan(){let{selection:o}=t,r=t.MSA?.getWidth()??0,n=Math.max(1,Math.floor(o?.start??0)),i=Math.min(r,Math.ceil(o?.end??0));return o&&n<=i?{start:n,end:i}:void 0},get selectionFasta(){let{rowNames:o}=t,r=this.resolvedSelection,n=this.selectionFileSpan;if(!r||!n)return"";let i=r.rowRuns.flatMap(([s,a])=>o.slice(s,a+1)).flatMap(s=>{let a=t.rowSequence(s);return a===void 0?[]:[[s,a]]});return Ive(i,n.start,n.end)},columnStatsAt(o){let{colStats:r,conservation:n,propertyConservation:i}=t;return Dve({col:o,colStats:r,conservation:n,propertyConservation:i})},getRowData(o){return{data:t.MSA?.getRowData(o),rowData:t.rowDataOf(o)}},get resolvedEncodings(){return t.encodings.map(o=>({...o,...this.scaleOf(o,FV.has(o.channel)?"features":"rows")}))},get resolvedScales(){let o=Object.values(t.rowData),r=(i,s)=>i.map(a=>af(a,s)).filter(Oa),n=(i,s)=>({spec:i,field:i.field,table:s,...s==="rows"?{values:o.map(a=>a?.[i.field]).filter(Oa)}:{values:r(t.allAnnotations,i.field),shown:r(t.filteredAnnotations,i.field)}});return hEe([...t.encodings.map(i=>n(i,FV.has(i.channel)?"features":"rows")),...t.rowPanels.flatMap(i=>i.kind==="strip"?[n(i,"rows")]:i.encoding?.color?[n(i.encoding.color,"features")]:[])])},scaleOf(o,r){return this.resolvedScales.get(wV({spec:o,field:o.field,table:r}))},get rowPanelScales(){let{rowData:o}=t,{fillPalette:r,featureFillEncoding:n,featureLabels:i}=this,s=t.filteredAnnotations;return t.rowPanels.map(a=>{if(a.kind==="features"){let p=a.encoding?.color,d=p?{field:p.field,...this.scaleOf(p,"features")}:n,m=a.encoding?.label;return{kind:a.kind,x:a.x,header:a.header??"",field:d?.field,legendKey:d?.key,legendTitle:d?.title,colors:p?CV(s,d,r):this.featureColors,labels:m?xV(s,m):i,legend:d?.legend??this.visibleDomainTypes.map(y=>({id:y.accession,label:y.name,color:y.color??r[y.accession]}))}}let{colorOf:l,legend:c,key:u,title:f}=this.scaleOf(a,"rows");return{kind:a.kind,field:a.field,header:a.header??a.field,legendKey:u,legendTitle:f,colors:WQ(o,a.field,l),legend:c}})},get resolvedRowPanels(){let o=this.rowPanelScales,r=0;return t.rowPanels.map((n,i)=>{let s=bV(n,t),a={id:`rowpanel-${i}`,width:s,offsetX:r};if(r+=s,n.kind==="features"){let l=n.transform?.find(c=>c.type==="align");return{...a,...o[i],spans:jve({panel:n,width:s,colWidth:t.colWidth,domainBands:this.domainBands,annotationsByRow:t.annotationsByRow,shifts:l?this.featureAlignShifts.get(l.on):void 0})}}return{...a,...o[i]}})},get featureAlignShifts(){let o=new Set(t.rowPanels.flatMap(r=>r.kind==="features"&&r.x==="position"?(r.transform??[]).filter(n=>n.type==="align").map(n=>n.on):[]));return new Map([...o].map(r=>[r,new Map(Object.entries(t.annotationsByRow).map(([n,i])=>{let s=i.find(a=>GR(a)===r);return s?[n,1-s.start]:void 0}).filter(Oa))]))},get tipLabelColors(){let o=this.resolvedEncodings.find(r=>r.channel==="tipLabel");return o?WQ(t.rowData,o.field,o.colorOf):void 0},get rowTints(){let o=this.resolvedEncodings.find(n=>n.channel==="rowTint");if(!o)return;let r=WQ(t.rowData,o.field,o.colorOf);return t.rowNames.map(n=>{let i=r.get(n);return i&&z_(i,ame)})},get branchColors(){let o=this.resolvedEncodings.find(s=>s.channel==="branch");if(!o)return;let r=mC(t.tree),n=new Map,i=new Map;for(let s=r.length-1;s>=0;s--){let a=r[s],l=a.children.length>0?g7e(a.children.map(u=>n.get(u))):t.rowDataOf(a.name)?.[o.field];n.set(a,l);let c=l===void 0?void 0:o.colorOf(l);c&&i.set(a.id,c)}return i}})).actions(t=>({setHeaderHeight(o){t.headerHeight=o},setHideHeader(o){t.hideHeader=o},setEmbeddedMode(o){t.embeddedMode=o},setImportForm(o){t.importForm=o},treeOverviewClick(o){let r=t.treeOverviewHit(o),n=t.treeOverviewFocusRows,i=!!n&&!!r&&r.rows[0]>=n[0]&&r.rows[1]<=n[1];t.setShowOnly(i||!r?void 0:r.id)},setTrackHeight(o,r){t.trackHeights.set(o,r)},reset(){t.resetCount++,t.loadWarnings=[],t.dismissedWarnings=[],t.setStatus(void 0),V8(t,Object.fromEntries(Object.entries(PC(t)).filter(([o])=>d7e.has(o)))),t.setError(void 0),t.setAnnotations([]),t.setHighlightedColumns(void 0),t.transientHighlights={},t.setMousePos(void 0,void 0),t.setMouseClickPos(void 0,void 0),t.setHoveredTreeNode(void 0)},async exportSVG(o){let{renderToSvg:r}=await Promise.resolve().then(()=>(VEe(),GEe)),n=await r(t,o),i=new Blob([n],{type:"image/svg+xml"});qv(i,yV(t.msaFilehandle,"svg"))},exportNewick(){let o=new Blob([t.treeNewick],{type:"text/plain"});qv(o,yV(t.treeFilehandle??t.msaFilehandle,"nwk","tree"))},setFilter(o,r){r===t.defaultOffAccessions.has(o)?t.turnedOffFeatures.set(o,!r):t.turnedOffFeatures.delete(o)},fit(){_r(()=>{for(let o=0;o<2;o++)this.fitHorizontally(12),this.fitVertically(16)})},fitVertically(o=bm){t.numRows>0&&t.setRowHeight(dr(t.msaAreaHeight/t.numRows,Z_,o)),t.scrollY=0},zoomToRegion(o){let 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t.treeAreaWidth??this.fittedTreeAreaWidth},get effectiveTreeWidth(){let o=this.showTreeText?this.labelColumnWidth:0;return t.treeWidth??Math.max(oR,Math.floor(this.effectiveTreeAreaWidth-t.marginLeft-this.cladeGutterWidth-o))},get showTreeText(){return t.drawLabels&&t.rowHeight>=U3},get mouseOverRowName(){let{mouseRow:o}=t;return o===void 0?void 0:this.leaves[o]?.data.name},get hoveredInsertion(){let{mouseCol:o,mouseRow:r}=t;if(o!==void 0&&r!==void 0){let n=this.leaves[r]?.data.name;if(n){let i=this.insertionPositions.get(n)?.find(s=>s.pos===o);if(i)return{rowName:n,col:o,letters:i.letters}}}},get root(){return ZQ(this.tree,{collapsed:t.collapsed,rotated:t.rotated,order:t.treeOrder,showOnly:t.showOnly})},get treeNewick(){return QEe(ZQ(this.tree,{collapsed:[],rotated:t.rotated,order:t.treeOrder}))},get treeOverviewHeight(){return t.showTreeOverview?t.overviewHeight:0},get treeOverviewLayout(){if(!t.showTreeOverview)return;let o=oz(ZQ(this.tree,{collapsed:t.collapsed,rotated:t.rotated,order:t.treeOrder}),{rowHeight:1,treeWidth:1});return{root:o.root,numTips:o.leaves.length,maxDepthToLeaf:o.root.depthToLeaf,showBranchLen:t.showBranchLen&&o.rootToTipLength>0}},get treeOverviewClades(){let o=this.treeOverviewLayout;return!o||t.clades.length===0?qEe:PV(t.clades,Jp(this.tree,r=>r.children),o.root)},get treeOverviewFocusRows(){let o=this.treeOverviewLayout;if(!o||!t.showOnly)return;let r=tf(o.root,n=>n.data.id===t.showOnly);return r?OV(r):void 0},treeOverviewHit(o){let r=this.treeOverviewLayout;if(!r)return;let{root:n,numTips:i}=r,s=i/t.overviewHeight,a=dr(Math.floor(o*s),0,i-1),l=dr(Math.ceil((o+1)*s)-1,a,i-1),c=YR(n,a+.5,l+.5);for(;!c.children&&c.parent;)c=c.parent;return c===n?void 0:{id:c.data.id,rows:OV(c)}},get rowPanelsWidth(){return _0(t.rowPanels.map(o=>bV(o,t)))},get rowPanelsHeaderHeight(){return t.rowPanels.length>0?iR:0},get msaAreaWidth(){return t.width-this.effectiveTreeAreaWidth-this.rowPanelsWidth-t.resizeHandleWidth},get treeAreaWidthMinusMargin(){return this.effectiveTreeAreaWidth-t.marginLeft-this.cladeGutterWidth},get blanks(){let{hideGapsEffective:o,allowedGappyness:r}=t;if(!o)return[];let n=this.leaves.map(u=>this.MSA?.getRow(u.data.name)).filter(Oa);if(n.length===0)return[];let i=this.MSA?.getWidth()??0,s=n.length,a=Math.ceil(r/100*s),l=new Uint32Array(i);for(let u=0;u<s;u++){let f=n[u],p=f.length;for(let d=0;d<i;d++)(d>=p||f.charCodeAt(d)-45>>>0<=1)&&l[d]++}let c=[];for(let u=0;u<i;u++)l[u]>=a&&c.push(u);return c},get insertionPositions(){let{blanks:o,rows:r}=this;if(o.length===0)return new Map;let n=new Map;for(let[i,s]of r){let a=lAe(o,s);a.length>0&&n.set(i,a)}return n},get rows(){let o=this.MSA;return this.leaves.map(r=>[r.data.name,o?.getRow(r.data.name)]).filter(r=>!!r[1])},get numRows(){return this.leaves.length},seqPosIndex(o){let r=this.MSA;if(!r)return;let n=KEe.get(r);n||(n=new Map,KEe.set(r,n));let i=n.get(o);if(!i){let s=r.getRow(o);if(!s)return;i=yEe(s),n.set(o,i)}return i},rowSequence(o){return this.MSA?.getRow(o)||void 0},get rowMap(){let o=this.MSA;return new Map(o?.getNames().map(r=>[r,o.getRow(r)]).filter(([,r])=>!!r))},get columns(){let o=this.columns2d;return new Map(this.rows.map((r,n)=>[r[0],o[n]]))},get columns2d(){let{hideGapsEffective:o}=t;return this.rows.map(([,r])=>(o?V_(this.blanks,r):r).toUpperCase())},get fontSize(){return z3(t.rowHeight)},get colStats(){return Hde(this.columns2d,this.numColumns)},get sequenceType(){let o=this.colStats.lettersPresent,r=["N","R","Y","K","M","S","W"],n=new Set(["A","C","G","T",...r]),i=new Set(["A","C","G","U",...r]),s=o.size>0&&[...o].every(l=>n.has(l)),a=o.size>0&&[...o].every(l=>i.has(l));return s?"dna":a?"rna":"amino"},get colConsensus(){let{colStats:o}=this;return Array.from({length:o.numColumns},(r,n)=>{let i=o.total(n),s=0,a="";o.forEachResidue(n,(c,u)=>{u>s&&(s=u,a=gm(c))});let l=i?s/i:0;return{letter:a,color:l>.4?`hsl(240, 30%, ${100*Math.max(1-l/3,.3)}%)`:void 0}})},get colClustalX(){let{colStats:o}=this;return Array.from({length:o.numColumns},(r,n)=>Rve(o,n))},get colSimilarity(){let{colStats:o,sequenceType:r}=this,n=r==="amino"?EEe:TEe;return Array.from({length:o.numColumns},(i,s)=>n(o,s))},get conservation(){let{colStats:o,alphabetMaxBits:r}=this;return Array.from({length:o.numColumns},(n,i)=>{let s=o.total(i),a=o.gapCount(i);return s>a?Math.max(0,1-o.entropy(i)/r)*(1-a/s):0})},get alphabetMaxBits(){return Gde(this.sequenceType)},get propertyConservation(){return this.sequenceType==="amino"?sEe(this.colStats):[]},get treeLayout(){let o=()=>this.effectiveTreeWidth;return oz(this.root,{get rowHeight(){return t.rowHeight},get treeWidth(){return o()}})},get hierarchy(){return this.treeLayout.root},get totalHeight(){return this.leaves.length*t.rowHeight},get leaves(){return this.treeLayout.leaves},get rootToTipLength(){return this.treeLayout.rootToTipLength},get pxPerBranchLength(){let o=this.rootToTipLength;return this.showBranchLenEffective&&o?this.effectiveTreeWidth/o:0},get maxDepthToLeaf(){return this.treeLayout.root.depthToLeaf},get allBranchesLength0(){return this.rootToTipLength===0},get showBranchLenEffective(){return this.allBranchesLength0?!1:t.showBranchLen}})).views(t=>({get totalWidth(){return t.numColumns*t.colWidth}})).views(t=>({get showMsaLetters(){return t.drawMsaLetters&&t.rowHeight>=U3&&t.colWidth>=VAe&&t.colWidth>t.rowHeight/2}})).views(t=>{let o=new WeakMap;return{get columnTrackContent(){let{MSA:r,blanks:n,hideGapsEffective:i}=t,s=r?.getWidth()??0,a=(u,f,p)=>{if(!u.row)return f;let d=Array.from({length:s},()=>p),m=t.seqPosIndex(u.row);return f.forEach((y,b)=>{let h=m?.[b];h!==void 0&&(d[h]=y)}),d},l=u=>i?aAe(n,u):u,c=(u,f)=>{let p=u.row?t.seqPosIndex(u.row)?.[f-1]:f-1;if(!(p===void 0||p<0||p>=s))return i?gC(n,p):p};return new Map(t.columnTracks.map(u=>{if(u.kind==="arc"){let p=(u.arcs??[]).map(d=>{let m=c(u,Math.min(d.start,d.end)),y=c(u,Math.max(d.start,d.end));return m!==void 0&&y!==void 0&&m<y?{start:m,end:y,color:d.color}:void 0}).filter(Oa);return[u.id,{arcs:p}]}if(u.kind==="bar"){let p=u.scales?.y?.domainMax??1,d=l(a(u,u.values??[],0)).map(m=>Math.min(1,Math.max(0,m/p)));return[u.id,{values:d}]}let f=l(a(u,(u.data??"").split("")," "));return[u.id,{data:f.join("")}]}))},trackHeight(r,n=r,i){return t.trackHeights.get(n)??i??a7e[r]??t.rowHeight},columnTrackModel(r){let n=o.get(r);return n||(n=Nf(()=>{let i=jEe.has(r.kind)?l7e(r.id):void 0,s=this.columnTrackContent.get(r.id);return{model:{id:r.id,name:r.name,kind:r.kind,heightKey:i,height:this.trackHeight(r.kind,i,r.height),barColor:r.color,arcColor:r.color,customColorScheme:r.encoding?.color?RV(r.encoding.color,[...r.encoding.color.domain??[],...new Set(r.data)]):void 0,data:s?.data,arcs:s?.arcs}}}),o.set(r,n)),n.get()},get columnTrackModels(){return t.columnTracks.map(r=>this.columnTrackModel(r))}}}).views(t=>({get secondaryStructureConsensus(){return t.MSA?.secondaryStructureConsensus},get secondaryStructureArcs(){let{blanks:o,hideGapsEffective:r}=t,n=this.secondaryStructureConsensus;if(n)return DEe(r?V_(o,n):n).map(({start:i,end:s,pseudoknot:a})=>({start:i,end:s,color:a?u7e:c7e}))},get adapterTrackModels(){let{MSA:o,hideGapsEffective:r,blanks:n}=t,i=(o?.tracks??[]).filter(a=>!!a.data);if(i.length===0)return[];let{rowHeight:s}=t;return i.map(a=>({model:{...a,kind:"text",data:r?V_(n,a.data):a.data,height:s}}))},get basePairTrackModels(){let o=this.secondaryStructureArcs;return o?.length?[{model:{id:"base-pairs",name:"Base pairs",kind:"arc",heightKey:"arc",height:t.trackHeight("arc"),arcs:o}}]:[]},get computedTrackModels(){return[{id:"conservation",name:"Conservation",kind:"bar",barColor:"gray"},...t.sequenceType==="amino"?[{id:"property-conservation",name:"Property conservation",kind:"bar",barColor:"#6a51a3"}]:[],{id:"sequence-logo",name:"Sequence logo",kind:"logo"},{id:"position-ruler",name:"Position",kind:"ruler"}].map(o=>({model:{...o,heightKey:jEe.has(o.kind)?o.kind:void 0,height:t.trackHeight(o.kind)}}))},get referenceTrackModels(){let{relativeTo:o}=t,r=o===void 0?void 0:t.columns.get(o);return o===void 0||r===void 0?[]:[{model:{id:"reference-row",name:o,kind:"reference",data:r,height:t.rowHeight}}]},get tracks(){return[...this.adapterTrackModels,...this.basePairTrackModels,...t.columnTrackModels,...t.numColumns>0?this.computedTrackModels:[],...this.referenceTrackModels]},get turnedOnTracks(){return this.tracks.filter(o=>!YEe(t.turnedOffTracks,o.model.id))},get showHorizontalScrollbar(){return eTe(t.totalWidth,t.msaAreaWidth)},visibleColToRowLetter(o,r){return t.rowSequence(o)?.[this.visibleColToGlobalCol(r)]},visibleColToSeqPos(o,r){return pEe(t.seqPosIndex(o),this.visibleColToGlobalCol(r))},visibleColToSeqPosOneBased(o,r){let n=this.visibleColToSeqPos(o,r);return n!==void 0?n+1:void 0},globalColToVisibleCol(o){let{blanks:r,hideGapsEffective:n}=t;return n?uEe(r,o):o},visibleColToGlobalCol(o){let{blanks:r,hideGapsEffective:n}=t;return n?cEe(r,o):o},seqPosToGlobalCol(o,r){let n=t.rowSequence(o);return n===void 0?void 0:t.seqPosIndex(o)?.[r]??(r===0?0:n.length)},seqEndToGlobalCol(o,r){let n=t.seqPosIndex(o);return n&&n.length>0?n[Math.min(r,n.length-1)]:void 0},seqPosToVisibleCol(o,r){let n=this.seqPosToGlobalCol(o,r);return n===void 0?void 0:this.globalColToVisibleCol(n)},visibleSpan({row:o,start:r,end:n}){let{blanks:i}=t,s=Math.max(1,Math.floor(r)),a=Math.ceil(n),l=s-1,c=Math.min(a,t.MSA?.getWidth()??a)-1;if(o!==void 0){let p=this.seqPosToGlobalCol(o,s-1),d=this.seqEndToGlobalCol(o,a-1);if(p===void 0||d===void 0)return;l=p,c=d}let u=this.globalColToVisibleCol(l)??gC(i,l),f=this.globalColToVisibleCol(c)??gC(i,c)-1;return u<=f?{startCol:u,endCol:f}:void 0},get residueMappingProblems(){let o=[];for(let r of t.residueMappings){let n={row:r.row,structureId:r.structure.id},i=t.seqPosIndex(r.row)?.length;if(i===void 0){o.push({...n,scope:"mapping",reason:"no such row in the alignment"});continue}if(r.rowLength!==void 0&&r.rowLength!==i){o.push({...n,scope:"mapping",reason:`computed against a ${r.rowLength}-residue row; this one has ${i}`});continue}let s=r.segments.find(a=>a.rowEnd>i||a.rowStart<1);if(s){o.push({...n,scope:"mapping",reason:`segment ${s.rowStart}-${s.rowEnd} does not fit a ${i}-residue row`});continue}for(let a of r.segments)XEe(a)||o.push({...n,scope:"segment",reason:`segment ${a.rowStart}-${a.rowEnd} maps to ${a.structStart}-${a.structEnd}, which is a different length`})}return o},get usableResidueMappings(){let o=new Set(this.residueMappingProblems.filter(r=>r.scope==="mapping").map(r=>`${r.row}\0${r.structureId}`));return t.residueMappings.filter(r=>!o.has(`${r.row}\0${r.structure.id}`)).map(r=>({...r,segments:r.segments.filter(XEe)}))},get mappedStructures(){return this.usableResidueMappings.map(o=>({row:o.row,structure:o.structure}))},structureResidue(o,r,n){let i=[];for(let s of this.usableResidueMappings){if(s.row!==o||n!==void 0&&s.structure.id!==n)continue;let a=s.segments.find(l=>r>=l.rowStart&&r<=l.rowEnd);if(a){let l=a.structStart+(r-a.rowStart);i.push({structure:s.structure,position:l,observed:!m7e(s.unobserved,l)})}}return i.length===1?i[0]:void 0},rowResidue(o,r,n){let i=[];for(let s of this.usableResidueMappings){if(s.structure.id!==o||n!==void 0&&s.structure.asymId!==void 0&&s.structure.asymId!==n)continue;let a=s.segments.find(l=>r>=l.structStart&&r<=l.structEnd);a&&i.push({rowName:s.row,seqPos:a.rowStart+(r-a.structStart)})}return i.length===1?i[0]:void 0}})).views(t=>({get treeScaleBar(){return Ove(t.pxPerBranchLength,t.effectiveTreeAreaWidth-t.marginLeft*2)},get topBandHeight(){return Math.max(t.showHorizontalScrollbar?t.minimapHeight:0,t.rowPanelsHeaderHeight,t.treeOverviewHeight+(this.treeScaleBar?Zu:0))},get msaAreaHeight(){return t.height-this.topBandHeight-t.headerHeight-this.totalTrackAreaHeight},get totalTrackAreaHeight(){return _0(t.turnedOnTracks.map(o=>o.model.height))},get annotationTypes(){let o=new Map;for(let r of t.allAnnotations)o.has(r.accession)||o.set(r.accession,r);return o},get defaultOffAccessions(){return new Set(t.allAnnotations.filter(o=>o.defaultOff).map(o=>o.accession))},featureOff(o){return t.turnedOffFeatures.get(o)??this.defaultOffAccessions.has(o)},get filteredAnnotations(){return t.allAnnotations.filter(o=>!this.featureOff(o.accession))},get cellFill(){return t.bgColor?t.actuallyShowDomains&&t.domainFill&&this.filteredAnnotations.length>0?"domain":"residue":"none"},get annotationsByRow(){let{rowNamesSet:o}=t;return ele(this.filteredAnnotations,r=>JEe(r.id,o))}})).views(t=>({get showVerticalScrollbar(){return eTe(t.totalHeight,t.msaAreaHeight)}})).views(t=>({get dataInitialized(){return!!(t.data.msa||t.data.tree)&&!t.error},get blocksX(){return Xv({viewportSize:t.msaAreaWidth,viewportPos:-t.scrollX,blockSize:t.blockSize,mapSize:t.totalWidth})},get blocksY(){return Xv({viewportSize:t.msaAreaHeight,viewportPos:-t.scrollY,blockSize:t.blockSize,mapSize:t.totalHeight})}})).views(t=>({get verticalScrollbarWidth(){return t.showVerticalScrollbar?20:0},get msaCanvasWidth(){return t.msaAreaWidth-this.verticalScrollbarWidth},get maxScrollX(){return Math.min(-t.totalWidth+this.msaCanvasWidth,0)},get blocks2d(){return t.blocksY.flatMap(o=>t.blocksX.map(r=>[r,o]))},get wheelZooming(){return t.zoomSnapshot!==void 0},get isLoading(){return t.loadingMSA||t.loadingTree},get dataWarnings(){let{annotations:o,rowNamesSet:r}=t;return t.dataInitialized&&o.length>0&&!o.some(n=>r.has(JEe(n.id,r)))?[`0 of ${o.length} annotations name a row in this alignment`]:[]},get warnings(){return[...t.loadWarnings,...this.dataWarnings.filter(o=>!t.dismissedWarnings.includes(o))]},get maxScrollY(){return Math.min(-t.totalHeight+t.msaAreaHeight,0)},get wheelZoomAxis(){return t.scrollZoom?t.scrollZoomAxis:"both"}})).actions(t=>({setDrawMsaLetters(o){t.drawMsaLetters=o},clearWarnings(){t.loadWarnings=[],t.dismissedWarnings=t.dataWarnings},setScrollZoom(o){t.scrollZoom=o},setScrollZoomAxis(o){t.scrollZoomAxis=o},setHoveredTreeNode(o){if(o===t.hoveredTreeNode?.nodeId)return;if(!o){t.hoveredTreeNode=void 0;return}let r=tf(t.hierarchy,n=>n.data.id===o);t.hoveredTreeNode=r?{nodeId:o,descendantNames:Qc(r).map(n=>n.data.name)}:void 0},calculateNeighborJoiningTreeFromMSA(){let o=[...t.rowMap];if(o.length<2)throw new Error("Need at least 2 sequences to build a tree");if(o.length>sb)throw new Error(`Neighbor joining here is capped at ${sb} sequences and this alignment has ${o.length}. Build the tree with FastTree or IQ-TREE and open it alongside the alignment: https://gmod.org/JBrowseMSA/tutorials/protein_family`);this.replaceTree(rEe(o))},rerootAt(o){let r=tf(Jp(t.tree,i=>i.children),i=>i.data.id===o);if(!r?.parent)return;let n=DV(Jp(t.inputTree,i=>i.children),Qc(r).map(i=>i.data.name));if(n){let i=Qc(n);t.setTreeRoot({outgroup:[...new Set([i[0].data.name,i.at(-1).data.name])]})}},replaceTree(o){_r(()=>{t.setTreeFilehandle(void 0),t.collapsed.clear(),t.rotated.clear(),t.setShowOnly(void 0),t.setTree(o)})},resetZoom(){t.setColWidth(12),t.setRowHeight(16)},zoomAtCenter(o,r="both"){this.zoomToPos(o,t.msaCanvasWidth/2,t.msaAreaHeight/2,r)},zoomIn(){this.zoomAtCenter(1.5)},zoomOut(){this.zoomAtCenter(.75)},zoomToPos(o,r,n,i="both"){_r(()=>{let s=(-t.scrollX+r)/t.colWidth,a=(-t.scrollY+n)/t.rowHeight,l=i!=="both"||t.colWidth===12&&t.rowHeight===16;if(i!=="vertical"){let{value:d,held:m}=ZEe(t.colWidth,o,12,t.zoomHeld.col,X_,l);t.colWidth=d,t.zoomHeld={...t.zoomHeld,col:m}}if(i!=="horizontal"){let{value:d,held:m}=ZEe(t.rowHeight,o,16,t.zoomHeld.row,Z_,l);t.rowHeight=d,t.zoomHeld={...t.zoomHeld,row:m}}t.scrollX=dr(r-s*t.colWidth,t.maxScrollX,0);let c=n-a*t.rowHeight,u=Math.max(0,-t.maxScrollY),f=t.totalHeight-u,p=f>0?dr(1-u/f,0,1):1;t.scrollY=dr(c*(1-p),t.maxScrollY,0)})},wheelZoomToPos(o,r,n){t.zoomSnapshot??=L4(t,!1),this.zoomToPos(o,r,n,t.wheelZoomAxis),Ahe(t,t.zoomSnapshot)||(t.zoomSnapshot=L4(t,!0))},endWheelZoom(){t.zoomSnapshot=void 0},doScrollY(o){this.setScrollY(t.scrollY+o)},setScrollY(o){t.scrollY=dr(o,t.maxScrollY,0)},setAnnotations(o){t.annotations=o},applyGFFText(o){this.setAnnotations(mR(AR(o)))},doScrollX(o){this.setScrollX(t.scrollX+o)},setScrollX(o){t.scrollX=dr(o,t.maxScrollX,0)},setColumnTracks(o){t.columnTracks.replace(o.map(_V))},setRowData(o){t.data.setTreeMetadata(JSON.stringify(o))},setEncodings(o){t.encodings.replace(o.map(SV))},setRowPanels(o){t.rowPanels.replace(o.map(BV))},setResidueMappings(o){t.residueMappings.replace(o)},toggleTrack(o){t.turnedOffTracks.set(o,!YEe(t.turnedOffTracks,o))},setTracksShown(o,r){for(let n of o)oTe.has(n)===!r?t.turnedOffTracks.delete(n):t.turnedOffTracks.set(n,!r)},setStatus(o){t.status=o}})).views(t=>({cellAt(o,r){let n=t.visibleColToGlobalCol(o),i=r===void 0?void 0:t.leaves[r]?.data.name;return i===void 0?{column:n+1}:{column:n+1,row:i,residue:t.visibleColToSeqPosOneBased(i,o),letter:t.rowSequence(i)?.[n]}},get hoveredCell(){let{mouseCol:o,mouseRow:r}=t;return o===void 0?void 0:this.cellAt(o,r)},get clickedCell(){let{mouseClickCol:o,mouseClickRow:r}=t;return o===void 0?void 0:this.cellAt(o,r)},get viewport(){let{scrollX:o,colWidth:r,numColumns:n,viewInitialized:i}=t;if(n===0||!i)return;let{xStart:s,xEnd:a}=Fa({offsetX:-o,blockWidth:t.msaCanvasWidth,colWidth:r}),l=Math.max(0,Math.min(a,n)-1);return{startColumn:t.visibleColToGlobalCol(Math.min(s,l))+1,endColumn:t.visibleColToGlobalCol(l)+1}},get segmentDomainTypes(){return[...t.annotationTypes.values()].filter(o=>L3.has(o.featureType??"")).toSorted((o,r)=>o.start-r.start)},get categoricalDomainTypes(){return[...t.annotationTypes.values()].filter(o=>!L3.has(o.featureType??""))},get fillPalette(){let o=Object.fromEntries(this.segmentDomainTypes.map((n,i)=>[n.accession,F3[i%F3.length]])),r=n=>this.categoricalDomainTypes.filter(i=>NAe(i.featureType)===n).map(i=>i.accession);return{...o,...uT(r(!1),LAe,75),...uT(r(!0),FAe,40)}},get featureFillEncoding(){return this.resolvedEncodings.find(o=>o.channel==="featureFill")},get featureColors(){return CV(t.filteredAnnotations,this.featureFillEncoding,this.fillPalette)},get featureLabels(){let o=this.resolvedEncodings.find(r=>r.channel==="featureLabel");return o?xV(t.filteredAnnotations,o.field):void 0},get segmentLabels(){return new Map(this.segmentDomainTypes.map((o,r)=>{let n=/(\d+)\s*$/.exec(o.name);return[o.accession,n?n[1]:`${r+1}`]}))},get visibleDomainTypes(){return this.categoricalDomainTypes.filter(o=>!t.featureOff(o.accession)).toSorted((o,r)=>o.start-r.start)},get legends(){let{featureFillEncoding:o,fillPalette:r,visibleDomainTypes:n}=this,i=new Map,s=new Set,a=(l,c,u,f=!1)=>{let p=l??"domains";if(u.length===0||i.has(p))return;let d=f||l===void 0?"domains":`rowData-${c}`,m=d;for(let y=2;s.has(m);y++)m=`${d}-${y}`;s.add(m),i.set(p,{id:m,title:c??"Domains",entries:u})};t.actuallyShowDomains&&t.numColumns>0&&a(o?.key,o?.title,o?o.legend:n.map(l=>({id:l.accession,label:l.name,color:l.color??r[l.accession]})),!0);for(let{channel:l,key:c,title:u,legend:f}of this.resolvedEncodings)FV.has(l)||a(c,u,f);for(let{legendKey:l,legendTitle:c,legend:u}of this.rowPanelScales)a(l,c,u);return[...i.values()]},get domainUnderline(){return t.actuallyShowDomains&&t.cellFill!=="domain"&&!t.subFeatureRows&&t.showMsaLetters},get domainBands(){let{blanks:o}=t,r=new Map;for(let[n,i]of Object.entries(t.annotationsByRow)){let s=i.toSorted((a,l)=>B3(l)-B3(a)).map(a=>{let l=t.seqPosToGlobalCol(n,a.start-1),c=t.seqEndToGlobalCol(n,a.end-1);if(l===void 0||c===void 0)return;let u=gC(o,l),f=gC(o,c+1);return f>u?{annotation:a,startCol:u,endCol:f}:void 0}).filter(Oa).map((a,l)=>({...a,stackIndex:l}));s.length>0&&r.set(n,fC(s))}return r},get domainBandsByStart(){return new 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 react/cjs/react.production.js: