react-msaview 9.3.0 → 9.5.0

package/src/model.ts

@@ -280,7 +280,6 @@ export const preservedOnReset = new Set([
   'drawNodeBubbles',
   'drawNodeLabels',
   'showTreeOverview',
-  'showTreeScaleBar',
   'overviewHeight',
   'turnedOffTracks',
   'trackHeights',
@@ -2934,14 +2933,11 @@ function stateModelFactory({
     .views(self => ({
       /**
        * #getter
-       * the branch-length scale bar over the tree, undefined while
-       * `showTreeScaleBar` is off, in cladogram mode, or when the tree area is
-       * too narrow for one
+       * the branch-length scale bar over the tree, the guide of its branch-length
+       * scale: undefined in cladogram mode, with the tree off, or when the tree
+       * area is too narrow for one
        */
       get treeScaleBar() {
-        if (!self.showTreeScaleBar) {
-          return undefined
-        }
         return scaleBarLength(
           self.pxPerBranchLength,
           self.effectiveTreeAreaWidth - self.marginLeft * 2,
@@ -3595,12 +3591,20 @@ function stateModelFactory({
       /**
        * #getter
        * categorical feature types (InterPro domains and the like) that each get
-       * their own color and a legend entry
+       * their own color and a legend entry, in palette order: grouped by
+       * feature type, types in the order they first appear. A GenPept
+       * record's CDD Sites follow every Region, so the palette spends the
+       * colors after the domains' on the sites inside them
        */
       get categoricalDomainTypes() {
-        return [...self.annotationTypes.values()].filter(
+        const types = [...self.annotationTypes.values()].filter(
           d => !segmentFeatureTypes.has(d.featureType ?? ''),
         )
+        const typeOrder = [...new Set(types.map(d => d.featureType))]
+        return types.toSorted(
+          (a, b) =>
+            typeOrder.indexOf(a.featureType) - typeOrder.indexOf(b.featureType),
+        )
       },
       get fillPalette() {
         const segments = Object.fromEntries(

package/src/version.ts

@@ -1 +1 @@
-export const version = '9.3.0'
+export const version = '9.5.0'