react-msaview 9.1.1 → 9.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundle/index.js +79 -79
- package/bundle/index.js.map +4 -4
- package/dist/components/DragHandle.js +2 -1
- package/dist/components/DragHandle.js.map +1 -1
- package/dist/components/MSAViewer.d.ts +31 -19
- package/dist/components/MSAViewer.js +2 -1
- package/dist/components/MSAViewer.js.map +1 -1
- package/dist/components/Track.js +2 -5
- package/dist/components/Track.js.map +1 -1
- package/dist/components/VerticalScrollbar.js +1 -1
- package/dist/components/VerticalScrollbar.js.map +1 -1
- package/dist/components/header/Header.js +2 -1
- package/dist/components/header/Header.js.map +1 -1
- package/dist/components/minimap/Minimap.js +1 -1
- package/dist/components/minimap/Minimap.js.map +1 -1
- package/dist/components/msa/MSACanvas.js +16 -27
- package/dist/components/msa/MSACanvas.js.map +1 -1
- package/dist/components/rowpanels/RowPanels.js +8 -6
- package/dist/components/rowpanels/RowPanels.js.map +1 -1
- package/dist/components/settings/SettingsPanel.js +2 -1
- package/dist/components/settings/SettingsPanel.js.map +1 -1
- package/dist/components/settings/TrackList.js +8 -5
- package/dist/components/settings/TrackList.js.map +1 -1
- package/dist/components/tracks/TrackTooltipContent.js +2 -1
- package/dist/components/tracks/TrackTooltipContent.js.map +1 -1
- package/dist/components/tracks/drawTracks.js +13 -6
- package/dist/components/tracks/drawTracks.js.map +1 -1
- package/dist/components/tree/TreeCanvas.js +8 -6
- package/dist/components/tree/TreeCanvas.js.map +1 -1
- package/dist/constants.d.ts +1 -0
- package/dist/constants.js +2 -0
- package/dist/constants.js.map +1 -1
- package/dist/element.d.ts +11 -7
- package/dist/element.js +46 -8
- package/dist/element.js.map +1 -1
- package/dist/featurePanels.d.ts +0 -7
- package/dist/featurePanels.js +1 -16
- package/dist/featurePanels.js.map +1 -1
- package/dist/ggplotPalettes.js +12 -1
- package/dist/ggplotPalettes.js.map +1 -1
- package/dist/groupKeys.d.ts +6 -0
- package/dist/groupKeys.js +52 -0
- package/dist/groupKeys.js.map +1 -0
- package/dist/index.d.ts +1 -1
- package/dist/model.d.ts +40 -17
- package/dist/model.js +123 -54
- package/dist/model.js.map +1 -1
- package/dist/scales.d.ts +114 -13
- package/dist/scales.js +154 -19
- package/dist/scales.js.map +1 -1
- package/dist/svgTestUtil.d.ts +22 -12
- package/dist/types.d.ts +30 -28
- package/dist/useDragScroll.d.ts +4 -3
- package/dist/useDragScroll.js +9 -6
- package/dist/useDragScroll.js.map +1 -1
- package/dist/useWheelScroll.d.ts +26 -8
- package/dist/useWheelScroll.js +108 -71
- package/dist/useWheelScroll.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/viewerSnapshot.js +2 -1
- package/dist/viewerSnapshot.js.map +1 -1
- package/package.json +3 -3
- package/src/components/DragHandle.tsx +2 -1
- package/src/components/MSAViewer.tsx +11 -8
- package/src/components/Track.tsx +2 -8
- package/src/components/VerticalScrollbar.tsx +1 -1
- package/src/components/header/Header.tsx +2 -1
- package/src/components/minimap/Minimap.tsx +1 -1
- package/src/components/msa/MSACanvas.tsx +14 -35
- package/src/components/rowpanels/RowPanels.tsx +8 -10
- package/src/components/settings/SettingsPanel.tsx +2 -1
- package/src/components/settings/TrackList.tsx +9 -4
- package/src/components/tracks/TrackTooltipContent.tsx +2 -1
- package/src/components/tracks/drawTracks.ts +15 -7
- package/src/components/tree/TreeCanvas.tsx +8 -10
- package/src/constants.ts +2 -0
- package/src/element.ts +53 -8
- package/src/featurePanels.ts +1 -25
- package/src/ggplotPalettes.ts +13 -1
- package/src/groupKeys.ts +54 -0
- package/src/index.ts +13 -2
- package/src/model.ts +174 -72
- package/src/scales.ts +268 -25
- package/src/types.ts +29 -26
- package/src/useDragScroll.ts +11 -8
- package/src/useWheelScroll.ts +124 -84
- package/src/version.ts +1 -1
- package/src/viewerSnapshot.ts +3 -1
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-
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import { columnLogoStack } from '../../sequenceLogo.js';
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import { setFontSize } from '../../setFontSize.js';
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import { contrastTextFn } from '../../util.js';
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import { tileColorFn } from '../msa/tileColor.js';
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import { visibleColRange } from '../msa/visibleColRange.js';
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function drawConservationBars({ ctx, values, color, colWidth, trackHeight, offsetX, blockSize, }) {
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function drawTextTrackContent({ ctx, data,
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function drawTextTrackContent({ ctx, data, colorAt, contrastText, bgColor, drawLetters, colWidth, rowHeight, offsetX, blockSize, }) {
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const letter = str[i];
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case 'text':
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case 'text':
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case 'reference': {
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const { bgColor, fontSize, rowHeight, showMsaLetters } = model;
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drawTextTrackContent({
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|
ctx,
|
|
269
272
|
data,
|
|
270
|
-
|
|
273
|
+
// the reference row takes its colors from the alignment's own
|
|
274
|
+
// scheme, per column under a dynamic one
|
|
275
|
+
colorAt: kind === 'reference'
|
|
276
|
+
? tileColorFn(model)
|
|
277
|
+
: (_col, letter) => scheme[letter.toUpperCase()],
|
|
271
278
|
contrastText: contrastTextFn(theme),
|
|
272
279
|
bgColor,
|
|
273
280
|
drawLetters: showMsaLetters,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
|
+
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AAO;YACP,OAAO,EAAE,QAAQ;YACjB,KAAK;YACL,kBAAkB;YAClB,0BAA0B;SAC3B,CAAC,CAAA;QACF,QAAQ,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,CAAA;IAChC,CAAC;AACH,CAAC"}
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@@ -1,4 +1,4 @@
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1
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-
import React, {
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1
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import React, { useRef } from 'react';
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import { isAlive } from '@jbrowse/mobx-state-tree';
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import { observer } from 'mobx-react';
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import { useCanvasAutorun } from '../../useCanvasAutorun.js';
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@@ -9,10 +9,11 @@ import { renderTreeMouseover } from './renderTreeMouseover.js';
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9
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const TreeCanvas = observer(function ({ model }) {
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const ref = useRef(null);
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const { height, blocksY, effectiveTreeAreaWidth, scrollY, highResScaleFactor, } = model;
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const
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const { onPointerDown, touchAction } = useWheelScroll({
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ref,
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model,
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axes: 'y',
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});
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const canvasWidth = effectiveTreeAreaWidth * highResScaleFactor;
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18
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const canvasHeight = height * highResScaleFactor;
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18
19
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const mouseoverRef = useCanvasAutorun({
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@@ -25,7 +26,8 @@ const TreeCanvas = observer(function ({ model }) {
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height: canvasHeight,
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deps: [model],
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});
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-
return (React.createElement("div", { ref: ref,
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return (React.createElement("div", { ref: ref, onPointerDown: onPointerDown, style: {
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touchAction,
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height,
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position: 'relative',
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width: effectiveTreeAreaWidth,
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"TreeCanvas.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,
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1
|
+
{"version":3,"file":"TreeCanvas.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAErC,OAAO,EAAE,OAAO,EAAE,MAAM,0BAA0B,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;AACxD,OAAO,WAAW,MAAM,kBAAmB,CAAA;AAC3C,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,EAAE,mBAAmB,EAAE,MAAM,0BAA0B,CAAA;AAI9D,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,EACJ,MAAM,EACN,OAAO,EACP,sBAAsB,EACtB,OAAO,EACP,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,EAAE,aAAa,EAAE,WAAW,EAAE,GAAG,cAAc,CAAC;QACpD,GAAG;QACH,KAAK;QACL,IAAI,EAAE,GAAG;KACV,CAAC,CAAA;IAEF,MAAM,WAAW,GAAG,sBAAsB,GAAG,kBAAkB,CAAA;IAC/D,MAAM,YAAY,GAAG,MAAM,GAAG,kBAAkB,CAAA;IAChD,MAAM,YAAY,GAAG,gBAAgB,CAAC;QACpC,IAAI,EAAE,GAAG,CAAC,EAAE;YACV,IAAI,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;gBACnB,mBAAmB,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,CAAA;YACrC,CAAC;QACH,CAAC;QACD,KAAK,EAAE,WAAW;QAClB,MAAM,EAAE,YAAY;QACpB,IAAI,EAAE,CAAC,KAAK,CAAC;KACd,CAAC,CAAA;IAEF,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,aAAa,EAAE,aAAa,EAC5B,KAAK,EAAE;YACL,WAAW;YACX,MAAM;YACN,QAAQ,EAAE,UAAU;YACpB,KAAK,EAAE,sBAAsB;SAC9B;QAID,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,SAAS,EAAE,cAAc,OAAO,KAAK;gBACrC,UAAU,EAAE,WAAW;aACxB;YAEA,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CACpB,oBAAC,eAAe,IAAC,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,GAAI,CAC9D,CAAC;YACF,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,GAAI,CACzB;QACN,gCACE,GAAG,EAAE,YAAY,EACjB,KAAK,EAAE,WAAW,EAClB,MAAM,EAAE,YAAY,EACpB,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,KAAK,EAAE,sBAAsB;gBAC7B,MAAM;gBACN,MAAM,EAAE,IAAI;gBACZ,aAAa,EAAE,MAAM;aACtB,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
|
package/dist/constants.d.ts
CHANGED
|
@@ -2,6 +2,7 @@ import type { TreeOrder } from './types.ts';
|
|
|
2
2
|
export declare const defaultRowHeight = 16;
|
|
3
3
|
export declare const defaultColWidth = 12;
|
|
4
4
|
export declare const defaultHeight = 550;
|
|
5
|
+
export declare const resizeHandleWidth = 5;
|
|
5
6
|
export declare const defaultScrollX = 0;
|
|
6
7
|
export declare const defaultScrollY = 0;
|
|
7
8
|
export declare const defaultCurrentAlignment = 0;
|
package/dist/constants.js
CHANGED
|
@@ -2,6 +2,8 @@
|
|
|
2
2
|
export const defaultRowHeight = 16;
|
|
3
3
|
export const defaultColWidth = 12;
|
|
4
4
|
export const defaultHeight = 550;
|
|
5
|
+
// the dividers' thickness, between the tree and the alignment and under the view
|
|
6
|
+
export const resizeHandleWidth = 5;
|
|
5
7
|
export const defaultScrollX = 0;
|
|
6
8
|
export const defaultScrollY = 0;
|
|
7
9
|
export const defaultCurrentAlignment = 0;
|
package/dist/constants.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAEA,sBAAsB;AACtB,MAAM,CAAC,MAAM,gBAAgB,GAAG,EAAE,CAAA;AAClC,MAAM,CAAC,MAAM,eAAe,GAAG,EAAE,CAAA;AACjC,MAAM,CAAC,MAAM,aAAa,GAAG,GAAG,CAAA;AAChC,MAAM,CAAC,MAAM,cAAc,GAAG,CAAC,CAAA;AAC/B,MAAM,CAAC,MAAM,cAAc,GAAG,CAAC,CAAA;AAC/B,MAAM,CAAC,MAAM,uBAAuB,GAAG,CAAC,CAAA;AACxC,0EAA0E;AAC1E,2BAA2B;AAC3B,MAAM,CAAC,MAAM,kBAAkB,GAAG,IAAI,CAAA;AACtC,MAAM,CAAC,MAAM,uBAAuB,GAAG,IAAI,CAAA;AAC3C,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI,CAAA;AACnC,MAAM,CAAC,MAAM,uBAAuB,GAAG,GAAG,CAAA;AAC1C,MAAM,CAAC,MAAM,qBAAqB,GAAG,KAAK,CAAA;AAC1C,2EAA2E;AAC3E,kEAAkE;AAClE,MAAM,CAAC,MAAM,mBAAmB,GAAG,CAAC,CAAA;AACpC,uEAAuE;AACvE,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAA;AAEtC,yEAAyE;AACzE,8EAA8E;AAC9E,wCAAwC;AACxC,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,GAAG,CAAC;IACzC,MAAM;IACN,KAAK;IACL,gBAAgB;IAChB,iBAAiB;IACjB,KAAK;IACL,QAAQ;CACT,CAAC,CAAA;AAEF,6DAA6D;AAC7D,MAAM,CAAC,MAAM,aAAa,GAAG,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;AACnD,MAAM,CAAC,MAAM,qBAAqB,GAAG,IAAI,CAAA;AACzC,MAAM,CAAC,MAAM,iBAAiB,GAAG,KAAK,CAAA;AAEtC,gFAAgF;AAChF,yEAAyE;AACzE,+BAA+B;AAC/B,MAAM,CAAC,MAAM,cAAc,GAAG,CAAC,MAAM,EAAE,YAAY,EAAE,UAAU,CAAU,CAAA;AAEzE,MAAM,CAAC,MAAM,qBAAqB,GAAmB,MAAM,CAAA;AAE3D,8EAA8E;AAC9E,2EAA2E;AAC3E,yCAAyC;AACzC,MAAM,CAAC,MAAM,kBAAkB,GAAG,CAAC,CAAA;AACnC,MAAM,CAAC,MAAM,iBAAiB,GAAG,CAAC,CAAA;AAElC,+EAA+E;AAC/E,sEAAsE;AACtE,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,CAAA;AAEvC,+EAA+E;AAC/E,0EAA0E;AAC1E,mDAAmD;AACnD,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAA;AAEtC,MAAM,UAAU,WAAW,CAAC,SAAiB;IAC3C,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;AACjD,CAAC;AAED,2EAA2E;AAC3E,8EAA8E;AAC9E,uCAAuC;AACvC,MAAM,CAAC,MAAM,gBAAgB,GAAG,WAAW,CAAC,gBAAgB,CAAC,CAAA;AAE7D,+EAA+E;AAC/E,iFAAiF;AACjF,0BAA0B;AAC1B,MAAM,CAAC,MAAM,WAAW,GAAG,GAAG,CAAA;AAC9B,MAAM,CAAC,MAAM,YAAY,GAAG,GAAG,CAAA;AAC/B,MAAM,CAAC,MAAM,WAAW,GAAG,EAAE,CAAA;AAE7B,+DAA+D;AAC/D,MAAM,CAAC,MAAM,kBAAkB,GAAG,GAAG,CAAA;AAErC,qBAAqB;AACrB,MAAM,CAAC,MAAM,cAAc,GAAG,IAAI,CAAA;AAClC,MAAM,CAAC,MAAM,sBAAsB,GAAG,UAAU,CAAA;AAChD,MAAM,CAAC,MAAM,sBAAsB,GAAG,IAAI,CAAA;AAE1C,sBAAsB;AACtB,MAAM,CAAC,MAAM,iBAAiB,GAAG,IAAI,CAAA;AACrC,MAAM,CAAC,MAAM,uBAAuB,GAAG,KAAK,CAAA;AAC5C,6EAA6E;AAC7E,+EAA+E;AAC/E,+EAA+E;AAC/E,wDAAwD;AACxD,MAAM,CAAC,MAAM,YAAY,GAAG,EAAE,CAAA;AAC9B,MAAM,CAAC,MAAM,eAAe,GAAG,GAAG,CAAA;AAClC,MAAM,CAAC,MAAM,cAAc,GAAG,EAAE,CAAA;AAChC,MAAM,CAAC,MAAM,gBAAgB,GAAG,GAAG,CAAA;AACnC,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,CAAA;AACxC,MAAM,CAAC,MAAM,UAAU,GAAG;IACxB,cAAc;IACd,OAAO;IACP,WAAW;IACX,kBAAkB;CACqB,CAAA;AACzC,MAAM,CAAC,MAAM,gBAAgB,GAAc,cAAc,CAAA;AACzD,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI,CAAA;AACnC,MAAM,CAAC,MAAM,sBAAsB,GAAG,IAAI,CAAA;AAC1C,MAAM,CAAC,MAAM,qBAAqB,GAAG,KAAK,CAAA;AAC1C,MAAM,CAAC,MAAM,uBAAuB,GAAG,KAAK,CAAA;AAC5C,MAAM,CAAC,MAAM,uBAAuB,GAAG,KAAK,CAAA;AAC5C,MAAM,CAAC,MAAM,qBAAqB,GAAG,GAAG,CAAA;AAExC,6EAA6E;AAC7E,8EAA8E;AAC9E,+EAA+E;AAC/E,iEAAiE;AACjE,MAAM,CAAC,MAAM,sBAAsB,GAAG,GAAG,CAAA;AAEzC,+EAA+E;AAC/E,2EAA2E;AAC3E,YAAY;AACZ,MAAM,CAAC,MAAM,YAAY,GAAG,IAAI,CAAA;AAEhC,8EAA8E;AAC9E,qEAAqE;AACrE,MAAM,CAAC,MAAM,mBAAmB,GAAG,SAAS,CAAA;AAC5C,MAAM,CAAC,MAAM,mBAAmB,GAAG,GAAG,CAAA;AAEtC,2EAA2E;AAC3E,6EAA6E;AAC7E,4EAA4E;AAC5E,8EAA8E;AAC9E,6BAA6B;AAC7B,MAAM,CAAC,MAAM,sBAAsB,GAAG,MAAM,CAAA;AAE5C,8EAA8E;AAC9E,8EAA8E;AAC9E,4DAA4D;AAC5D,MAAM,CAAC,MAAM,oBAAoB,GAAG,EAAE,CAAA;AAEtC,wDAAwD;AACxD,MAAM,CAAC,MAAM,kBAAkB,GAAG,EAAE,CAAA;AAEpC,0EAA0E;AAC1E,wCAAwC;AACxC,MAAM,CAAC,MAAM,wBAAwB,GAAG,GAAG,CAAA;AAE3C,+EAA+E;AAC/E,6EAA6E;AAC7E,mEAAmE;AACnE,MAAM,CAAC,MAAM,gBAAgB,GAAG,IAAI,CAAA;AACpC,MAAM,CAAC,MAAM,YAAY,GAAG,gBAAgB,GAAG,CAAC,CAAA"}
|
|
1
|
+
{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAEA,sBAAsB;AACtB,MAAM,CAAC,MAAM,gBAAgB,GAAG,EAAE,CAAA;AAClC,MAAM,CAAC,MAAM,eAAe,GAAG,EAAE,CAAA;AACjC,MAAM,CAAC,MAAM,aAAa,GAAG,GAAG,CAAA;AAChC,iFAAiF;AACjF,MAAM,CAAC,MAAM,iBAAiB,GAAG,CAAC,CAAA;AAClC,MAAM,CAAC,MAAM,cAAc,GAAG,CAAC,CAAA;AAC/B,MAAM,CAAC,MAAM,cAAc,GAAG,CAAC,CAAA;AAC/B,MAAM,CAAC,MAAM,uBAAuB,GAAG,CAAC,CAAA;AACxC,0EAA0E;AAC1E,2BAA2B;AAC3B,MAAM,CAAC,MAAM,kBAAkB,GAAG,IAAI,CAAA;AACtC,MAAM,CAAC,MAAM,uBAAuB,GAAG,IAAI,CAAA;AAC3C,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI,CAAA;AACnC,MAAM,CAAC,MAAM,uBAAuB,GAAG,GAAG,CAAA;AAC1C,MAAM,CAAC,MAAM,qBAAqB,GAAG,KAAK,CAAA;AAC1C,2EAA2E;AAC3E,kEAAkE;AAClE,MAAM,CAAC,MAAM,mBAAmB,GAAG,CAAC,CAAA;AACpC,uEAAuE;AACvE,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAA;AAEtC,yEAAyE;AACzE,8EAA8E;AAC9E,wCAAwC;AACxC,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,GAAG,CAAC;IACzC,MAAM;IACN,KAAK;IACL,gBAAgB;IAChB,iBAAiB;IACjB,KAAK;IACL,QAAQ;CACT,CAAC,CAAA;AAEF,6DAA6D;AAC7D,MAAM,CAAC,MAAM,aAAa,GAAG,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;AACnD,MAAM,CAAC,MAAM,qBAAqB,GAAG,IAAI,CAAA;AACzC,MAAM,CAAC,MAAM,iBAAiB,GAAG,KAAK,CAAA;AAEtC,gFAAgF;AAChF,yEAAyE;AACzE,+BAA+B;AAC/B,MAAM,CAAC,MAAM,cAAc,GAAG,CAAC,MAAM,EAAE,YAAY,EAAE,UAAU,CAAU,CAAA;AAEzE,MAAM,CAAC,MAAM,qBAAqB,GAAmB,MAAM,CAAA;AAE3D,8EAA8E;AAC9E,2EAA2E;AAC3E,yCAAyC;AACzC,MAAM,CAAC,MAAM,kBAAkB,GAAG,CAAC,CAAA;AACnC,MAAM,CAAC,MAAM,iBAAiB,GAAG,CAAC,CAAA;AAElC,+EAA+E;AAC/E,sEAAsE;AACtE,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,CAAA;AAEvC,+EAA+E;AAC/E,0EAA0E;AAC1E,mDAAmD;AACnD,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,CAAA;AAEtC,MAAM,UAAU,WAAW,CAAC,SAAiB;IAC3C,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;AACjD,CAAC;AAED,2EAA2E;AAC3E,8EAA8E;AAC9E,uCAAuC;AACvC,MAAM,CAAC,MAAM,gBAAgB,GAAG,WAAW,CAAC,gBAAgB,CAAC,CAAA;AAE7D,+EAA+E;AAC/E,iFAAiF;AACjF,0BAA0B;AAC1B,MAAM,CAAC,MAAM,WAAW,GAAG,GAAG,CAAA;AAC9B,MAAM,CAAC,MAAM,YAAY,GAAG,GAAG,CAAA;AAC/B,MAAM,CAAC,MAAM,WAAW,GAAG,EAAE,CAAA;AAE7B,+DAA+D;AAC/D,MAAM,CAAC,MAAM,kBAAkB,GAAG,GAAG,CAAA;AAErC,qBAAqB;AACrB,MAAM,CAAC,MAAM,cAAc,GAAG,IAAI,CAAA;AAClC,MAAM,CAAC,MAAM,sBAAsB,GAAG,UAAU,CAAA;AAChD,MAAM,CAAC,MAAM,sBAAsB,GAAG,IAAI,CAAA;AAE1C,sBAAsB;AACtB,MAAM,CAAC,MAAM,iBAAiB,GAAG,IAAI,CAAA;AACrC,MAAM,CAAC,MAAM,uBAAuB,GAAG,KAAK,CAAA;AAC5C,6EAA6E;AAC7E,+EAA+E;AAC/E,+EAA+E;AAC/E,wDAAwD;AACxD,MAAM,CAAC,MAAM,YAAY,GAAG,EAAE,CAAA;AAC9B,MAAM,CAAC,MAAM,eAAe,GAAG,GAAG,CAAA;AAClC,MAAM,CAAC,MAAM,cAAc,GAAG,EAAE,CAAA;AAChC,MAAM,CAAC,MAAM,gBAAgB,GAAG,GAAG,CAAA;AACnC,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,CAAA;AACxC,MAAM,CAAC,MAAM,UAAU,GAAG;IACxB,cAAc;IACd,OAAO;IACP,WAAW;IACX,kBAAkB;CACqB,CAAA;AACzC,MAAM,CAAC,MAAM,gBAAgB,GAAc,cAAc,CAAA;AACzD,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI,CAAA;AACnC,MAAM,CAAC,MAAM,sBAAsB,GAAG,IAAI,CAAA;AAC1C,MAAM,CAAC,MAAM,qBAAqB,GAAG,KAAK,CAAA;AAC1C,MAAM,CAAC,MAAM,uBAAuB,GAAG,KAAK,CAAA;AAC5C,MAAM,CAAC,MAAM,uBAAuB,GAAG,KAAK,CAAA;AAC5C,MAAM,CAAC,MAAM,qBAAqB,GAAG,GAAG,CAAA;AAExC,6EAA6E;AAC7E,8EAA8E;AAC9E,+EAA+E;AAC/E,iEAAiE;AACjE,MAAM,CAAC,MAAM,sBAAsB,GAAG,GAAG,CAAA;AAEzC,+EAA+E;AAC/E,2EAA2E;AAC3E,YAAY;AACZ,MAAM,CAAC,MAAM,YAAY,GAAG,IAAI,CAAA;AAEhC,8EAA8E;AAC9E,qEAAqE;AACrE,MAAM,CAAC,MAAM,mBAAmB,GAAG,SAAS,CAAA;AAC5C,MAAM,CAAC,MAAM,mBAAmB,GAAG,GAAG,CAAA;AAEtC,2EAA2E;AAC3E,6EAA6E;AAC7E,4EAA4E;AAC5E,8EAA8E;AAC9E,6BAA6B;AAC7B,MAAM,CAAC,MAAM,sBAAsB,GAAG,MAAM,CAAA;AAE5C,8EAA8E;AAC9E,8EAA8E;AAC9E,4DAA4D;AAC5D,MAAM,CAAC,MAAM,oBAAoB,GAAG,EAAE,CAAA;AAEtC,wDAAwD;AACxD,MAAM,CAAC,MAAM,kBAAkB,GAAG,EAAE,CAAA;AAEpC,0EAA0E;AAC1E,wCAAwC;AACxC,MAAM,CAAC,MAAM,wBAAwB,GAAG,GAAG,CAAA;AAE3C,+EAA+E;AAC/E,6EAA6E;AAC7E,mEAAmE;AACnE,MAAM,CAAC,MAAM,gBAAgB,GAAG,IAAI,CAAA;AACpC,MAAM,CAAC,MAAM,YAAY,GAAG,gBAAgB,GAAG,CAAC,CAAA"}
|
package/dist/element.d.ts
CHANGED
|
@@ -1,13 +1,17 @@
|
|
|
1
1
|
/**
|
|
2
2
|
* Registers a custom element that renders MSAViewer, for pages with no React.
|
|
3
3
|
* Attributes: msa-url, tree-url, gff-url, color-scheme, height, hide-header,
|
|
4
|
-
* theme, tree-area-width
|
|
5
|
-
* features, colorScheme, highlights, columnTracks, residueMappings
|
|
6
|
-
* selection. The
|
|
7
|
-
*
|
|
8
|
-
*
|
|
9
|
-
*
|
|
10
|
-
*
|
|
4
|
+
* theme, tree-area-width, reference-row and loading. Properties: msa, tree and
|
|
5
|
+
* gff text, features, colorScheme, highlights, columnTracks, residueMappings
|
|
6
|
+
* and selection. The colorScheme property takes a `{domain, range}` the
|
|
7
|
+
* color-scheme attribute cannot hold, and wins over the attribute while set. Events:
|
|
8
|
+
* cell-hover, cell-click, viewport-change and selection-change, each with the
|
|
9
|
+
* MSAViewer callback's value as detail.
|
|
10
|
+
*
|
|
11
|
+
* `loading="lazy"` mounts the viewer once the element comes within 200 pixels
|
|
12
|
+
* of the viewport, as `<img loading="lazy">` loads its image. Until then the
|
|
13
|
+
* element shows its own children, such as an `<img>` of the first frame, and
|
|
14
|
+
* reserves the viewer's height.
|
|
11
15
|
*
|
|
12
16
|
* Inside a <nightingale-manager>, the element registers with it and speaks its
|
|
13
17
|
* protocol: it follows the display-start, display-end and highlight attributes
|
package/dist/element.js
CHANGED
|
@@ -1,4 +1,5 @@
|
|
|
1
1
|
import { when } from 'mobx';
|
|
2
|
+
import { defaultHeight, resizeHandleWidth } from './constants.js';
|
|
2
3
|
import { mount } from './mount.js';
|
|
3
4
|
const dataProperties = [
|
|
4
5
|
'msa',
|
|
@@ -20,7 +21,11 @@ const ownAttributes = [
|
|
|
20
21
|
'theme',
|
|
21
22
|
'reference-row',
|
|
22
23
|
'tree-area-width',
|
|
24
|
+
'loading',
|
|
23
25
|
];
|
|
26
|
+
// how far outside the viewport a lazy element starts mounting, so the viewer
|
|
27
|
+
// is drawing by the time the reader scrolls to it
|
|
28
|
+
const lazyMargin = '200px';
|
|
24
29
|
// the attributes a <nightingale-manager> writes on the elements it holds
|
|
25
30
|
const nightingaleAttributes = ['display-start', 'display-end', 'highlight'];
|
|
26
31
|
function numberAttribute(value) {
|
|
@@ -55,13 +60,17 @@ function residueRange(model, row, viewport) {
|
|
|
55
60
|
/**
|
|
56
61
|
* Registers a custom element that renders MSAViewer, for pages with no React.
|
|
57
62
|
* Attributes: msa-url, tree-url, gff-url, color-scheme, height, hide-header,
|
|
58
|
-
* theme, tree-area-width
|
|
59
|
-
* features, colorScheme, highlights, columnTracks, residueMappings
|
|
60
|
-
* selection. The
|
|
61
|
-
*
|
|
62
|
-
*
|
|
63
|
-
*
|
|
64
|
-
*
|
|
63
|
+
* theme, tree-area-width, reference-row and loading. Properties: msa, tree and
|
|
64
|
+
* gff text, features, colorScheme, highlights, columnTracks, residueMappings
|
|
65
|
+
* and selection. The colorScheme property takes a `{domain, range}` the
|
|
66
|
+
* color-scheme attribute cannot hold, and wins over the attribute while set. Events:
|
|
67
|
+
* cell-hover, cell-click, viewport-change and selection-change, each with the
|
|
68
|
+
* MSAViewer callback's value as detail.
|
|
69
|
+
*
|
|
70
|
+
* `loading="lazy"` mounts the viewer once the element comes within 200 pixels
|
|
71
|
+
* of the viewport, as `<img loading="lazy">` loads its image. Until then the
|
|
72
|
+
* element shows its own children, such as an `<img>` of the first frame, and
|
|
73
|
+
* reserves the viewer's height.
|
|
65
74
|
*
|
|
66
75
|
* Inside a <nightingale-manager>, the element registers with it and speaks its
|
|
67
76
|
* protocol: it follows the display-start, display-end and highlight attributes
|
|
@@ -76,6 +85,7 @@ export function defineMsaElement(tagName = 'jbrowse-msa') {
|
|
|
76
85
|
class MsaElement extends HTMLElement {
|
|
77
86
|
static observedAttributes = [...ownAttributes, ...nightingaleAttributes];
|
|
78
87
|
#viewer;
|
|
88
|
+
#nearby;
|
|
79
89
|
#model;
|
|
80
90
|
#manager;
|
|
81
91
|
#cancelRange;
|
|
@@ -224,7 +234,19 @@ export function defineMsaElement(tagName = 'jbrowse-msa') {
|
|
|
224
234
|
if (!this.style.display) {
|
|
225
235
|
this.style.display = 'block';
|
|
226
236
|
}
|
|
227
|
-
|
|
237
|
+
if (this.#lazy) {
|
|
238
|
+
const height = numberAttribute(this.getAttribute('height')) ?? defaultHeight;
|
|
239
|
+
this.style.minHeight = `${height + resizeHandleWidth}px`;
|
|
240
|
+
this.#nearby = new IntersectionObserver(entries => {
|
|
241
|
+
if (entries.some(entry => entry.isIntersecting)) {
|
|
242
|
+
this.#mount();
|
|
243
|
+
}
|
|
244
|
+
}, { rootMargin: lazyMargin });
|
|
245
|
+
this.#nearby.observe(this);
|
|
246
|
+
}
|
|
247
|
+
else {
|
|
248
|
+
this.#mount();
|
|
249
|
+
}
|
|
228
250
|
const manager = this.closest('nightingale-manager');
|
|
229
251
|
if (manager) {
|
|
230
252
|
void customElements.whenDefined('nightingale-manager').then(() => {
|
|
@@ -235,7 +257,18 @@ export function defineMsaElement(tagName = 'jbrowse-msa') {
|
|
|
235
257
|
});
|
|
236
258
|
}
|
|
237
259
|
}
|
|
260
|
+
get #lazy() {
|
|
261
|
+
return (this.getAttribute('loading') === 'lazy' &&
|
|
262
|
+
typeof IntersectionObserver !== 'undefined');
|
|
263
|
+
}
|
|
264
|
+
#mount() {
|
|
265
|
+
this.#nearby?.disconnect();
|
|
266
|
+
this.#nearby = undefined;
|
|
267
|
+
this.#viewer ??= mount(this, this.#props());
|
|
268
|
+
}
|
|
238
269
|
disconnectedCallback() {
|
|
270
|
+
this.#nearby?.disconnect();
|
|
271
|
+
this.#nearby = undefined;
|
|
239
272
|
this.#manager?.unregister(this);
|
|
240
273
|
this.#manager = undefined;
|
|
241
274
|
this.#cancelRange?.();
|
|
@@ -258,6 +291,11 @@ export function defineMsaElement(tagName = 'jbrowse-msa') {
|
|
|
258
291
|
else if (name === 'highlight') {
|
|
259
292
|
this.#followHighlight();
|
|
260
293
|
}
|
|
294
|
+
else if (name === 'loading') {
|
|
295
|
+
if (this.#nearby && !this.#lazy) {
|
|
296
|
+
this.#mount();
|
|
297
|
+
}
|
|
298
|
+
}
|
|
261
299
|
else {
|
|
262
300
|
this.#viewer?.update(this.#props());
|
|
263
301
|
}
|
package/dist/element.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"element.js","sourceRoot":"","sources":["../src/element.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAA;AAE3B,OAAO,EAAE,KAAK,EAAE,MAAM,YAAa,CAAA;AAoBnC,MAAM,cAAc,GAAG;IACrB,KAAK;IACL,MAAM;IACN,KAAK;IACL,UAAU;IACV,aAAa;IACb,YAAY;IACZ,cAAc;IACd,iBAAiB;CACuB,CAAA;AAO1C,MAAM,aAAa,GAAG;IACpB,SAAS;IACT,UAAU;IACV,SAAS;IACT,cAAc;IACd,QAAQ;IACR,aAAa;IACb,OAAO;IACP,eAAe;IACf,iBAAiB;
|
|
1
|
+
{"version":3,"file":"element.js","sourceRoot":"","sources":["../src/element.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAA;AAE3B,OAAO,EAAE,aAAa,EAAE,iBAAiB,EAAE,MAAM,gBAAgB,CAAA;AACjE,OAAO,EAAE,KAAK,EAAE,MAAM,YAAa,CAAA;AAoBnC,MAAM,cAAc,GAAG;IACrB,KAAK;IACL,MAAM;IACN,KAAK;IACL,UAAU;IACV,aAAa;IACb,YAAY;IACZ,cAAc;IACd,iBAAiB;CACuB,CAAA;AAO1C,MAAM,aAAa,GAAG;IACpB,SAAS;IACT,UAAU;IACV,SAAS;IACT,cAAc;IACd,QAAQ;IACR,aAAa;IACb,OAAO;IACP,eAAe;IACf,iBAAiB;IACjB,SAAS;CACD,CAAA;AAEV,6EAA6E;AAC7E,kDAAkD;AAClD,MAAM,UAAU,GAAG,OAAO,CAAA;AAE1B,yEAAyE;AACzE,MAAM,qBAAqB,GAAG,CAAC,eAAe,EAAE,aAAa,EAAE,WAAW,CAAC,CAAA;AAE3E,SAAS,eAAe,CAAC,KAAgC;IACvD,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAA;IAC5C,OAAO,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;AAC3C,CAAC;AAED,6EAA6E;AAC7E,SAAS,cAAc,CAAC,KAAoB,EAAE,GAAY;IACxD,OAAO,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;QAC7C,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,eAAe,CAAC,CAAA;QACzD,OAAO,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,IAAI,KAAK,EAAE,CAAC,CAAA;IACvE,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,SAAS,eAAe,CAAC,KAAmB,EAAE,GAAW,EAAE,MAAc;IACvE,MAAM,OAAO,GAAG,KAAK,CAAC,qBAAqB,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IACvD,OAAO,OAAO,KAAK,SAAS;QAC1B,CAAC,CAAC,SAAS;QACX,CAAC,CAAC,KAAK,CAAC,0BAA0B,CAAC,GAAG,EAAE,OAAO,CAAC,CAAA;AACpD,CAAC;AAED,qEAAqE;AACrE,SAAS,YAAY,CAAC,KAAmB,EAAE,GAAW,EAAE,QAAkB;IACxE,IAAI,KAAyB,CAAA;IAC7B,IAAI,GAAuB,CAAA;IAC3B,KAAK,IAAI,CAAC,GAAG,QAAQ,CAAC,WAAW,EAAE,CAAC,IAAI,QAAQ,CAAC,SAAS,IAAI,CAAC,KAAK,EAAE,CAAC,EAAE,EAAE,CAAC;QAC1E,KAAK,GAAG,eAAe,CAAC,KAAK,EAAE,GAAG,EAAE,CAAC,CAAC,CAAA;IACxC,CAAC;IACD,KAAK,IAAI,CAAC,GAAG,QAAQ,CAAC,SAAS,EAAE,CAAC,IAAI,QAAQ,CAAC,WAAW,IAAI,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;QACxE,GAAG,GAAG,eAAe,CAAC,KAAK,EAAE,GAAG,EAAE,CAAC,CAAC,CAAA;IACtC,CAAC;IACD,OAAO,KAAK,IAAI,GAAG,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;AAClD,CAAC;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,MAAM,UAAU,gBAAgB,CAAC,OAAO,GAAG,aAAa;IACtD,MAAM,QAAQ,GAAG,cAAc,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;IAC5C,IAAI,QAAQ,EAAE,CAAC;QACb,OAAO,QAAQ,CAAA;IACjB,CAAC;IAED,MAAM,UAAW,SAAQ,WAAW;QAClC,MAAM,CAAC,kBAAkB,GAAG,CAAC,GAAG,aAAa,EAAE,GAAG,qBAAqB,CAAC,CAAA;QAExE,OAAO,CAAgB;QACvB,OAAO,CAAuB;QAC9B,MAAM,CAAe;QACrB,QAAQ,CAAqB;QAC7B,YAAY,CAAa;QACzB,aAAa,GAAG,KAAK,CAAA;QACrB,SAAS,CAAiC;QAC1C,KAAK,GAAgB,EAAE,CAAA;QAWvB;YACE,KAAK,MAAM,GAAG,IAAI,cAAc,EAAE,CAAC;gBACjC,MAAM,CAAC,cAAc,CAAC,UAAU,CAAC,SAAS,EAAE,GAAG,EAAE;oBAC/C,YAAY,EAAE,IAAI;oBAClB,GAAG;wBACD,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;oBACxB,CAAC;oBACD,GAAG,CAAmB,KAA8B;wBAClD,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,KAAK,EAAE,CAAC,CAAA;oBACjC,CAAC;iBACF,CAAC,CAAA;YACJ,CAAC;QACH,CAAC;QAED,0DAA0D;QAC1D,IAAI,SAAS;YACX,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,SAAS,CAAA;QACnE,CAAC;QACD,IAAI,SAAS,CAAC,KAA+B;YAC3C,IAAI,CAAC,QAAQ,CAAC,EAAE,SAAS,EAAE,KAAK,EAAE,CAAC,CAAA;QACrC,CAAC;QAED,IAAI,aAAa;YACf,OAAO,IAAI,CAAC,YAAY,CAAC,eAAe,CAAC,IAAI,SAAS,CAAA;QACxD,CAAC;QAED,QAAQ,CAAC,IAAiB;YACxB,IAAI,CAAC,KAAK,GAAG,EAAE,GAAG,IAAI,CAAC,KAAK,EAAE,GAAG,IAAI,EAAE,CAAA;YACvC,IAAI,CAAC,OAAO,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,CAAA;QACrC,CAAC;QAED,MAAM;YACJ,MAAM,KAAK,GAAG,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,CAAA;YACxC,OAAO;gBACL,GAAG,IAAI,CAAC,KAAK;gBACb,MAAM,EAAE,IAAI,CAAC,YAAY,CAAC,SAAS,CAAC,IAAI,SAAS;gBACjD,OAAO,EAAE,IAAI,CAAC,YAAY,CAAC,UAAU,CAAC,IAAI,SAAS;gBACnD,MAAM,EAAE,IAAI,CAAC,YAAY,CAAC,SAAS,CAAC,IAAI,SAAS;gBACjD,WAAW,EACT,IAAI,CAAC,KAAK,CAAC,WAAW;oBACtB,IAAI,CAAC,YAAY,CAAC,cAAc,CAAC;oBACjC,SAAS;gBACX,MAAM,EAAE,eAAe,CAAC,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;gBACpD,aAAa,EAAE,eAAe,CAAC,IAAI,CAAC,YAAY,CAAC,iBAAiB,CAAC,CAAC;gBACpE,UAAU,EAAE,IAAI,CAAC,YAAY,CAAC,aAAa,CAAC;gBAC5C,KAAK,EAAE,KAAK,KAAK,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,OAAO;gBAC1C,WAAW,EAAE,IAAI,CAAC,EAAE;oBAClB,IAAI,CAAC,KAAK,CAAC,YAAY,EAAE,IAAI,CAAC,CAAA;oBAC9B,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAA;gBACzB,CAAC;gBACD,WAAW,EAAE,IAAI,CAAC,EAAE;oBAClB,IAAI,CAAC,KAAK,CAAC,YAAY,EAAE,IAAI,CAAC,CAAA;gBAChC,CAAC;gBACD,gBAAgB,EAAE,QAAQ,CAAC,EAAE;oBAC3B,IAAI,CAAC,KAAK,CAAC,iBAAiB,EAAE,QAAQ,CAAC,CAAA;oBACvC,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAA;gBAC7B,CAAC;gBACD,iBAAiB,EAAE,SAAS,CAAC,EAAE;oBAC7B,IAAI,CAAC,KAAK,CAAC,kBAAkB,EAAE,SAAS,CAAC,CAAA;gBAC3C,CAAC;gBACD,OAAO,EAAE,KAAK,CAAC,EAAE;oBACf,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;oBACnB,IAAI,CAAC,YAAY,EAAE,CAAA;oBACnB,IAAI,CAAC,gBAAgB,EAAE,CAAA;gBACzB,CAAC;aACF,CAAA;QACH,CAAC;QAED,KAAK,CAAC,IAAY,EAAE,MAAe;YACjC,IAAI,CAAC,aAAa,CAAC,IAAI,WAAW,CAAC,IAAI,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,CAAA;QACvD,CAAC;QAED,kBAAkB,CAAC,MAA+B;YAChD,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;gBAClB,IAAI,CAAC,aAAa,CAChB,IAAI,WAAW,CAAC,QAAQ,EAAE;oBACxB,MAAM;oBACN,OAAO,EAAE,IAAI;oBACb,UAAU,EAAE,IAAI;iBACjB,CAAC,CACH,CAAA;YACH,CAAC;QACH,CAAC;QAED,YAAY,CAAC,IAAsB;YACjC,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAA;YACzB,MAAM,GAAG,GAAG,IAAI,CAAC,aAAa,CAAA;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|
package/dist/featurePanels.d.ts
CHANGED
|
@@ -1,4 +1,3 @@
|
|
|
1
|
-
import type { ScaleSpec } from './scales.ts';
|
|
2
1
|
import type { Annotation, DomainBand, RowFeaturesSpec, RowPanelSpan, RowPanelSpec } from './types.ts';
|
|
3
2
|
export declare function rowPanelWidth(panel: RowPanelSpec, view: {
|
|
4
3
|
rowHeight: number;
|
|
@@ -29,9 +28,3 @@ export declare function featurePanelSpans({ panel, width, colWidth, domainBands,
|
|
|
29
28
|
annotationsByRow: Record<string, Annotation[]>;
|
|
30
29
|
shifts: Map<string, number> | undefined;
|
|
31
30
|
}): Map<string, RowPanelSpan[]>;
|
|
32
|
-
export declare function resolveFeatureScale(field: string, scale: ScaleSpec | undefined, annotations: Annotation[], drawn: Annotation[]): {
|
|
33
|
-
kind: 'categorical';
|
|
34
|
-
colorOf: (value: string) => string | undefined;
|
|
35
|
-
field: string;
|
|
36
|
-
legend: import("./types.ts").LegendEntry[];
|
|
37
|
-
};
|
package/dist/featurePanels.js
CHANGED
|
@@ -1,11 +1,9 @@
|
|
|
1
|
-
import { notEmpty } from '@jbrowse/core/util';
|
|
2
1
|
import { packDomainLanes } from './components/msa/packDomainLanes.js';
|
|
3
2
|
import { defaultFeaturePanelWidth } from './constants.js';
|
|
4
3
|
import { featureField } from './featureFields.js';
|
|
5
|
-
import { resolveScale } from './scales.js';
|
|
6
4
|
import { outlineColor } from './util.js';
|
|
7
5
|
// the fill of a span under a scale that gives its value no color, such as a
|
|
8
|
-
// gene a `
|
|
6
|
+
// gene a `domain` of gene names leaves out
|
|
9
7
|
const UNSCALED_FEATURE = '#d9d9d9';
|
|
10
8
|
// the fraction of a span a following one may cover before it takes a lane of
|
|
11
9
|
// its own in a `features` panel
|
|
@@ -171,17 +169,4 @@ export function featurePanelSpans({ panel, width, colWidth, domainBands, annotat
|
|
|
171
169
|
})),
|
|
172
170
|
]));
|
|
173
171
|
}
|
|
174
|
-
// a scale over the values a field takes across every feature loaded, so hiding
|
|
175
|
-
// a type in the filter dialog leaves the rest in their colors, and a legend of
|
|
176
|
-
// the values the features drawn carry
|
|
177
|
-
export function resolveFeatureScale(field, scale, annotations, drawn) {
|
|
178
|
-
const valuesOf = (list) => list.map(a => featureField(a, field)).filter(notEmpty);
|
|
179
|
-
const resolved = resolveScale(scale, valuesOf(annotations));
|
|
180
|
-
const shown = new Set(valuesOf(drawn));
|
|
181
|
-
return {
|
|
182
|
-
field,
|
|
183
|
-
...resolved,
|
|
184
|
-
legend: resolved.legend.filter(entry => shown.has(entry.id)),
|
|
185
|
-
};
|
|
186
|
-
}
|
|
187
172
|
//# sourceMappingURL=featurePanels.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"featurePanels.js","sourceRoot":"","sources":["../src/featurePanels.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"featurePanels.js","sourceRoot":"","sources":["../src/featurePanels.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,qCAAqC,CAAA;AACrE,OAAO,EAAE,wBAAwB,EAAE,MAAM,gBAAgB,CAAA;AACzD,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAA;AACjD,OAAO,EAAE,YAAY,EAAE,MAAM,WAAW,CAAA;AAUxC,4EAA4E;AAC5E,2CAA2C;AAC3C,MAAM,gBAAgB,GAAG,SAAS,CAAA;AAElC,6EAA6E;AAC7E,gCAAgC;AAChC,MAAM,WAAW,GAAG,GAAG,CAAA;AAEvB,6EAA6E;AAC7E,6EAA6E;AAC7E,6EAA6E;AAC7E,+BAA+B;AAC/B,MAAM,UAAU,aAAa,CAC3B,KAAmB,EACnB,IAA2B;IAE3B,OAAO,CACL,KAAK,CAAC,KAAK;QACX,CAAC,KAAK,CAAC,IAAI,KAAK,UAAU,CAAC,CAAC,CAAC,wBAAwB,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,CACxE,CAAA;AACH,CAAC;AAED,0EAA0E;AAC1E,6EAA6E;AAC7E,MAAM,UAAU,YAAY,CAAC,GAAY;IACvC,IAAI,OAAO,GAAG,KAAK,QAAQ,IAAI,GAAG,KAAK,IAAI,EAAE,CAAC;QAC5C,OAAO,SAAS,CAAA;IAClB,CAAC;IACD,MAAM,MAAM,GAA2B,EAAE,CAAA;IACzC,KAAK,MAAM,CAAC,KAAK,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;QACjD,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE,CAAC;YAC9B,MAAM,CAAC,KAAK,CAAC,GAAG,KAAK,CAAA;QACvB,CAAC;aAAM,IAAI,OAAO,KAAK,KAAK,QAAQ,IAAI,OAAO,KAAK,KAAK,SAAS,EAAE,CAAC;YACnE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;QAC/B,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAED,uEAAuE;AACvE,MAAM,UAAU,UAAU,CACxB,OAA2D,EAC3D,KAAa,EACb,OAA8C;IAE9C,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAA;IACxC,KAAK,MAAM,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;QAClD,MAAM,KAAK,GAAG,GAAG,EAAE,CAAC,KAAK,CAAC,CAAA;QAC1B,MAAM,KAAK,GAAG,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;QAC9D,IAAI,KAAK,EAAE,CAAC;YACV,MAAM,CAAC,GAAG,CAAC,IAAI,EAAE,KAAK,CAAC,CAAA;QACzB,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAED,+EAA+E;AAC/E,uEAAuE;AACvE,oBAAoB;AACpB,MAAM,UAAU,eAAe,CAC7B,WAAyB,EACzB,QAEa,EACb,WAAmC;IAEnC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAA;IACzC,MAAM,QAAQ,GAAG,CAAC,IAAY,EAAE,EAAE;QAChC,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;QAC7B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;YACtB,OAAO,GAAG,CAAA;QACZ,CAAC;QACD,MAAM,MAAM,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;QACjC,OAAO,CAAC,GAAG,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA;QACzB,OAAO,MAAM,CAAA;IACf,CAAC,CAAA;IACD,OAAO,IAAI,GAAG,CACZ,WAAW,CAAC,GAAG,CAAC,UAAU,CAAC,EAAE;QAC3B,MAAM,KAAK,GAAG,QAAQ;YACpB,CAAC,CAAC,YAAY,CAAC,UAAU,EAAE,QAAQ,CAAC,KAAK,CAAC;YAC1C,CAAC,CAAC,SAAS,CAAA;QACb,MAAM,IAAI,GACR,UAAU,CAAC,KAAK;YAChB,CAAC,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,QAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;YAC5D,CAAC,QAAQ,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,WAAW,CAAC,UAAU,CAAC,SAAS,CAAE,CAAC,CAAA;QACpE,OAAO,CAAC,UAAU,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;IACvD,CAAC,CAAC,CACH,CAAA;AACH,CAAC;AAED,6EAA6E;AAC7E,qBAAqB;AACrB,MAAM,UAAU,eAAe,CAAC,WAAyB,EAAE,KAAa;IACtE,MAAM,MAAM,GAAG,IAAI,GAAG,EAAsB,CAAA;IAC5C,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE,CAAC;QACrC,MAAM,KAAK,GAAG,YAAY,CAAC,UAAU,EAAE,KAAK,CAAC,CAAA;QAC7C,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,MAAM,CAAC,GAAG,CAAC,UAAU,EAAE,KAAK,CAAC,CAAA;QAC/B,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAQD;;;;;;GAMG;AACH,SAAS,eAAe,CACtB,IAA2B;IAE3B,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,CAAC,EAAE,EAAE;QACvC,MAAM,OAAO,GAAG,eAAe,CAC7B,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAC9C,CAAA;QACD,MAAM,OAAO,GAAG,eAAe,CAC7B,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAC9C,CAAA;QACD,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,OAAO,EAAE,CAAA;IACnC,CAAC,CAAC,CAAA;IACF,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,SAAS,IAAI,CAAC,CAAC,CAAC,CAAA;IACvE,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,SAAS,IAAI,CAAC,CAAC,CAAC,CAAA;IACzE,MAAM,SAAS,GAAG,EAAE,GAAG,IAAI,CAAA;IAC3B,OAAO,IAAI,GAAG,CACZ,KAAK,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC;QACxC,IAAI;QACJ;YACE,mEAAmE;YACnE,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,IAAI,EAAE,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,SAAS,EAAE,CAAC,CAAC;YACjE,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,IAAI,EAAE,EAAE,GAAG,CAAC,CAAC,IAAI,EAAE,SAAS,EAAE,CAAC,CAAC;SAC9D;KACF,CAAC,CACH,CAAA;AACH,CAAC;AAED,yDAAyD;AACzD,SAAS,UAAU,CACjB,KAAsB,EACtB,IAA2B;IAE3B,OAAO,KAAK,CAAC,QAAQ,KAAK,YAAY;QACpC,CAAC,CAAC,eAAe,CAAC,IAAI,CAAC;QACvB,CAAC,CAAC,IAAI,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,EAAE,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAA;AAC1E,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,iBAAiB,CAAC,EAChC,KAAK,EACL,KAAK,EACL,QAAQ,EACR,WAAW,EACX,gBAAgB,EAChB,MAAM,GAQP;IACC,IAAI,KAAK,CAAC,CAAC,KAAK,QAAQ,EAAE,CAAC;QACzB,OAAO,UAAU,CACf,KAAK,EACL,CAAC,GAAG,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC;YACtC,IAAI;YACJ,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBACjB,GAAG,IAAI;gBACP,MAAM,EAAE,IAAI,CAAC,QAAQ,GAAG,QAAQ;gBAChC,IAAI,EAAE,IAAI,CAAC,MAAM,GAAG,QAAQ;aAC7B,CAAC,CAAC;SACJ,CAAC,CACH,CAAA;IACH,CAAC;IACD,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,CAAC,gBAAgB,CAAC,CAAC,GAAG,CAClD,CAAC,CAAC,IAAI,EAAE,WAAW,CAAC,EAAE,EAAE;QACtB,MAAM,KAAK,GAAG,MAAM,EAAE,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QACpC,OAAO;YACL,IAAI;YACJ,WAAW,CAAC,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,CAAC;gBAC7B,UAAU;gBACV,KAAK,EAAE,UAAU,CAAC,KAAK,GAAG,CAAC,GAAG,KAAK;gBACnC,GAAG,EAAE,UAAU,CAAC,GAAG,GAAG,KAAK;aAC5B,CAAC,CAAC;SACK,CAAA;IACZ,CAAC,CACF,CAAA;IACD,IAAI,GAAG,GAAG,QAAQ,CAAA;IAClB,IAAI,GAAG,GAAG,CAAC,QAAQ,CAAA;IACnB,KAAK,MAAM,CAAC,EAAE,QAAQ,CAAC,IAAI,OAAO,EAAE,CAAC;QACnC,KAAK,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,QAAQ,EAAE,CAAC;YACtC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,CAAA;YAC1B,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,CAAA;QAC1B,CAAC;IACH,CAAC;IACD,8EAA8E;IAC9E,kDAAkD;IAClD,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,CAAA;IACvC,MAAM,KAAK,GAAG,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,QAAQ,GAAG,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACpD,2EAA2E;IAC3E,0EAA0E;IAC1E,4EAA4E;IAC5E,iCAAiC;IACjC,OAAO,UAAU,CACf,KAAK,EACL,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,QAAQ,CAAC,EAAE,EAAE,CAAC;QAChC,IAAI;QACJ,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE,EAAE,CAAC,CAAC;YAC5C,UAAU;YACV,MAAM,EAAE,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,KAAK;YAC7B,IAAI,EAAE,CAAC,GAAG,GAAG,GAAG,CAAC,GAAG,KAAK;YACzB,QAAQ,EAAE,KAAK;YACf,MAAM,EAAE,GAAG,GAAG,CAAC,GAAG,GAAG,KAAK,CAAC,GAAG,WAAW;SAC1C,CAAC,CAAC;KACJ,CAAC,CACH,CAAA;AACH,CAAC"}
|
package/dist/ggplotPalettes.js
CHANGED
|
@@ -69,11 +69,22 @@ export const namedPalettes = {
|
|
|
69
69
|
'#bab0ac',
|
|
70
70
|
],
|
|
71
71
|
};
|
|
72
|
+
// the spellings jbrowse-components' `paletteFromSpec` takes for two of them
|
|
73
|
+
const aliases = {
|
|
74
|
+
okabeIto: 'okabeito',
|
|
75
|
+
tableau10: 'tableau',
|
|
76
|
+
};
|
|
72
77
|
/**
|
|
73
78
|
* The colors a palette name asks for. `ggplot`, an unknown name, and no name at
|
|
74
79
|
* all give undefined, which `createPaletteMap` answers with the hue ramp.
|
|
75
80
|
*/
|
|
76
81
|
export function paletteNamed(name) {
|
|
77
|
-
return name === undefined
|
|
82
|
+
return name === undefined
|
|
83
|
+
? undefined
|
|
84
|
+
: Object.hasOwn(namedPalettes, name)
|
|
85
|
+
? namedPalettes[name]
|
|
86
|
+
: Object.hasOwn(aliases, name)
|
|
87
|
+
? namedPalettes[aliases[name]]
|
|
88
|
+
: undefined;
|
|
78
89
|
}
|
|
79
90
|
//# sourceMappingURL=ggplotPalettes.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ggplotPalettes.js","sourceRoot":"","sources":["../src/ggplotPalettes.ts"],"names":[],"mappings":"AAAA,MAAM,QAAQ,GAAG;IACf,CAAC,SAAS,CAAC;IACX,CAAC,SAAS,EAAE,SAAS,CAAC;IACtB,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IACjC,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IAC5C,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IACvD,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IAClE,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IAC7E;QACE,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;CACF,CAAA;AAED,eAAe,QAAQ,CAAA;AAEvB;;;GAGG;AACH,MAAM,CAAC,MAAM,aAAa,GAAsC;IAC9D,IAAI,EAAE;QACJ,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;IACD,KAAK,EAAE;QACL,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;IACD,yEAAyE;IACzE,YAAY;IACZ,QAAQ,EAAE;QACR,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;IACD,OAAO,EAAE;QACP,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;CACF,CAAA;AAED;;;GAGG;AACH,MAAM,UAAU,YAAY,CAAC,IAAa;IACxC,OAAO,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,
|
|
1
|
+
{"version":3,"file":"ggplotPalettes.js","sourceRoot":"","sources":["../src/ggplotPalettes.ts"],"names":[],"mappings":"AAAA,MAAM,QAAQ,GAAG;IACf,CAAC,SAAS,CAAC;IACX,CAAC,SAAS,EAAE,SAAS,CAAC;IACtB,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IACjC,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IAC5C,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IACvD,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IAClE,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC;IAC7E;QACE,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;CACF,CAAA;AAED,eAAe,QAAQ,CAAA;AAEvB;;;GAGG;AACH,MAAM,CAAC,MAAM,aAAa,GAAsC;IAC9D,IAAI,EAAE;QACJ,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;IACD,KAAK,EAAE;QACL,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;IACD,yEAAyE;IACzE,YAAY;IACZ,QAAQ,EAAE;QACR,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;IACD,OAAO,EAAE;QACP,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;QACT,SAAS;KACV;CACF,CAAA;AAED,4EAA4E;AAC5E,MAAM,OAAO,GAA2B;IACtC,QAAQ,EAAE,UAAU;IACpB,SAAS,EAAE,SAAS;CACrB,CAAA;AAED;;;GAGG;AACH,MAAM,UAAU,YAAY,CAAC,IAAa;IACxC,OAAO,IAAI,KAAK,SAAS;QACvB,CAAC,CAAC,SAAS;QACX,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,aAAa,EAAE,IAAI,CAAC;YAClC,CAAC,CAAC,aAAa,CAAC,IAAI,CAAC;YACrB,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,IAAI,CAAC;gBAC5B,CAAC,CAAC,aAAa,CAAC,OAAO,CAAC,IAAI,CAAE,CAAC;gBAC/B,CAAC,CAAC,SAAS,CAAA;AACnB,CAAC"}
|
|
@@ -0,0 +1,6 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* Numbers first by value, then every other value run by run with digit runs
|
|
3
|
+
* by magnitude, so `2` before `10`, `chr2` before `chr10` and `2.3.2.1a`
|
|
4
|
+
* before `2.3.4.4b`. The empty value sorts last.
|
|
5
|
+
*/
|
|
6
|
+
export declare function compareGroupKeys(a: string, b: string): number;
|
|
@@ -0,0 +1,52 @@
|
|
|
1
|
+
// copied from jbrowse-components packages/core/src/util/groupKeys.ts, which
|
|
2
|
+
// @jbrowse/core 5.0.0-beta.9 ships but the hosts the plugin runs on do not
|
|
3
|
+
const NUMERIC = /^-?\d+(\.\d+)?$/;
|
|
4
|
+
const DIGIT_RUNS = /\d+|\D+/g;
|
|
5
|
+
function compareRuns(a, b) {
|
|
6
|
+
const runsA = a.match(DIGIT_RUNS) ?? [];
|
|
7
|
+
const runsB = b.match(DIGIT_RUNS) ?? [];
|
|
8
|
+
const shared = Math.min(runsA.length, runsB.length);
|
|
9
|
+
for (let i = 0; i < shared; i++) {
|
|
10
|
+
const x = runsA[i];
|
|
11
|
+
const y = runsB[i];
|
|
12
|
+
if (x === y) {
|
|
13
|
+
continue;
|
|
14
|
+
}
|
|
15
|
+
if (/^\d/.test(x) && /^\d/.test(y)) {
|
|
16
|
+
const nx = Number(x);
|
|
17
|
+
const ny = Number(y);
|
|
18
|
+
if (nx !== ny) {
|
|
19
|
+
return nx < ny ? -1 : 1;
|
|
20
|
+
}
|
|
21
|
+
return x.length < y.length ? -1 : 1;
|
|
22
|
+
}
|
|
23
|
+
return x < y ? -1 : 1;
|
|
24
|
+
}
|
|
25
|
+
return runsA.length - runsB.length;
|
|
26
|
+
}
|
|
27
|
+
/**
|
|
28
|
+
* Numbers first by value, then every other value run by run with digit runs
|
|
29
|
+
* by magnitude, so `2` before `10`, `chr2` before `chr10` and `2.3.2.1a`
|
|
30
|
+
* before `2.3.4.4b`. The empty value sorts last.
|
|
31
|
+
*/
|
|
32
|
+
export function compareGroupKeys(a, b) {
|
|
33
|
+
if (a === b) {
|
|
34
|
+
return 0;
|
|
35
|
+
}
|
|
36
|
+
if (a === '' || b === '') {
|
|
37
|
+
return a === '' ? 1 : -1;
|
|
38
|
+
}
|
|
39
|
+
const numA = NUMERIC.test(a);
|
|
40
|
+
const numB = NUMERIC.test(b);
|
|
41
|
+
if (numA !== numB) {
|
|
42
|
+
return numA ? -1 : 1;
|
|
43
|
+
}
|
|
44
|
+
if (numA) {
|
|
45
|
+
const diff = Number(a) - Number(b);
|
|
46
|
+
if (diff !== 0) {
|
|
47
|
+
return diff < 0 ? -1 : 1;
|
|
48
|
+
}
|
|
49
|
+
}
|
|
50
|
+
return compareRuns(a, b);
|
|
51
|
+
}
|
|
52
|
+
//# sourceMappingURL=groupKeys.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"groupKeys.js","sourceRoot":"","sources":["../src/groupKeys.ts"],"names":[],"mappings":"AAAA,4EAA4E;AAC5E,2EAA2E;AAE3E,MAAM,OAAO,GAAG,iBAAiB,CAAA;AACjC,MAAM,UAAU,GAAG,UAAU,CAAA;AAE7B,SAAS,WAAW,CAAC,CAAS,EAAE,CAAS;IACvC,MAAM,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,IAAI,EAAE,CAAA;IACvC,MAAM,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,IAAI,EAAE,CAAA;IACvC,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,CAAC,CAAA;IACnD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QAChC,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAE,CAAA;QACnB,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAE,CAAA;QACnB,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;YACZ,SAAQ;QACV,CAAC;QACD,IAAI,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;YACnC,MAAM,EAAE,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;YACpB,MAAM,EAAE,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;YACpB,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;gBACd,OAAO,EAAE,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YACzB,CAAC;YACD,OAAO,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QACrC,CAAC;QACD,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACvB,CAAC;IACD,OAAO,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,MAAM,CAAA;AACpC,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,gBAAgB,CAAC,CAAS,EAAE,CAAS;IACnD,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;QACZ,OAAO,CAAC,CAAA;IACV,CAAC;IACD,IAAI,CAAC,KAAK,EAAE,IAAI,CAAC,KAAK,EAAE,EAAE,CAAC;QACzB,OAAO,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IAC1B,CAAC;IACD,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IAC5B,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IAC5B,IAAI,IAAI,KAAK,IAAI,EAAE,CAAC;QAClB,OAAO,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACtB,CAAC;IACD,IAAI,IAAI,EAAE,CAAC;QACT,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;QAClC,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;YACf,OAAO,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAC1B,CAAC;IACH,CAAC;IACD,OAAO,WAAW,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;AAC1B,CAAC"}
|
package/dist/index.d.ts
CHANGED
|
@@ -23,5 +23,5 @@ export type { InterProScanResults } from 'msa-parsers';
|
|
|
23
23
|
export type { ColumnCounts } from './columnCounts.ts';
|
|
24
24
|
export type { ColumnStats } from './columnStats.ts';
|
|
25
25
|
export type { ZoomSnapshot } from './zoomSnapshot.ts';
|
|
26
|
-
export type { ResolvedScale,
|
|
26
|
+
export type { ColorChannel, ColorSpec, LegacyColumnTrack, LegacyEncoding, LegacyRowPanel, LegacyScale, ResolvedScale, ScaleTable, SharedScale, } from './scales.ts';
|
|
27
27
|
export type { Accession, Annotation, Arc, ArcSpec, ArcTrackModel, BasicTrack, BasicTrackModel, Cell, Clade, CladeMark, ColorScheme, ColumnTrackSpec, DomainBand, Encoding, EncodingChannel, Feature, Highlight, Legend, LegendEntry, MsaSelection, Node, MappedStructure, NodeWithIds, NodeWithIdsAndLength, Region, ResidueEncoding, ResidueMapping, ResidueMappingProblem, ResidueSegment, ResolvedClade, ResolvedEncoding, ResolvedHighlight, ResolvedRowPanel, ResolvedSelection, RowDataInput, RowPanelSpec, RowResidue, StructureResidue, TextTrackModel, TidyDomainAnnotation, TrackKind, TreeOrder, TreeRoot, UnshareableData, Viewport, } from './types.ts';
|