react-msaview 9.1.1 → 9.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundle/index.js +49 -49
- package/bundle/index.js.map +4 -4
- package/dist/components/MSAViewer.d.ts +2 -0
- package/dist/components/settings/TrackList.js +8 -5
- package/dist/components/settings/TrackList.js.map +1 -1
- package/dist/components/tracks/TrackTooltipContent.js +2 -1
- package/dist/components/tracks/TrackTooltipContent.js.map +1 -1
- package/dist/components/tracks/drawTracks.js +13 -6
- package/dist/components/tracks/drawTracks.js.map +1 -1
- package/dist/model.d.ts +6 -0
- package/dist/model.js +23 -0
- package/dist/model.js.map +1 -1
- package/dist/svgTestUtil.d.ts +2 -0
- package/dist/types.d.ts +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/package.json +3 -3
- package/src/components/settings/TrackList.tsx +9 -4
- package/src/components/tracks/TrackTooltipContent.tsx +2 -1
- package/src/components/tracks/drawTracks.ts +15 -7
- package/src/model.ts +25 -0
- package/src/types.ts +1 -1
- package/src/version.ts +1 -1
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@@ -773,6 +773,7 @@ declare const MSAViewer: React.ForwardRefExoticComponent<MSAViewerProps & React.
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readonly adapterTrackModels: import("../types.ts").BasicTrack[];
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readonly basePairTrackModels: import("../types.ts").BasicTrack[];
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readonly computedTrackModels: import("../types.ts").BasicTrack[];
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+
readonly referenceTrackModels: import("../types.ts").BasicTrack[];
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readonly tracks: import("../types.ts").BasicTrack[];
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readonly turnedOnTracks: import("../types.ts").BasicTrack[];
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readonly showHorizontalScrollbar: boolean;
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@@ -1596,6 +1597,7 @@ declare const MSAViewer: React.ForwardRefExoticComponent<MSAViewerProps & React.
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readonly adapterTrackModels: import("../types.ts").BasicTrack[];
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readonly basePairTrackModels: import("../types.ts").BasicTrack[];
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readonly computedTrackModels: import("../types.ts").BasicTrack[];
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readonly referenceTrackModels: import("../types.ts").BasicTrack[];
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readonly tracks: import("../types.ts").BasicTrack[];
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readonly turnedOnTracks: import("../types.ts").BasicTrack[];
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readonly showHorizontalScrollbar: boolean;
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@@ -5,16 +5,19 @@ function trackGroups(model) {
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const computed = new Set(model.computedTrackModels.map(t => t.model.id));
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const computedEntries = [];
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const alignmentEntries = [];
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const referenceEntries = [];
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for (const { model: t } of model.tracks) {
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-
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-
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-
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-
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-
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const entries = t.kind === 'reference'
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? referenceEntries
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: computed.has(t.id)
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? computedEntries
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: alignmentEntries;
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entries.push({ id: t.id, label: t.name });
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}
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return [
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{ title: 'Computed from the alignment', entries: computedEntries },
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{ title: 'Alignment annotations', entries: alignmentEntries },
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{ title: 'Reference row', entries: referenceEntries },
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].filter(g => g.entries.length > 0);
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}
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// a filter box shows once the list is long enough to need one
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@@ -1 +1 @@
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1
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-
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1
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+
{"version":3,"file":"TrackList.js","sourceRoot":"","sources":["../../../src/components/settings/TrackList.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EACL,GAAG,EACH,MAAM,EACN,QAAQ,EACR,gBAAgB,EAChB,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AASrC,SAAS,WAAW,CAAC,KAAmB;IACtC,MAAM,QAAQ,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAA;IACxE,MAAM,eAAe,GAAY,EAAE,CAAA;IACnC,MAAM,gBAAgB,GAAY,EAAE,CAAA;IACpC,MAAM,gBAAgB,GAAY,EAAE,CAAA;IACpC,KAAK,MAAM,EAAE,KAAK,EAAE,CAAC,EAAE,IAAI,KAAK,CAAC,MAAM,EAAE,CAAC;QACxC,MAAM,OAAO,GACX,CAAC,CAAC,IAAI,KAAK,WAAW;YACpB,CAAC,CAAC,gBAAgB;YAClB,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;gBAClB,CAAC,CAAC,eAAe;gBACjB,CAAC,CAAC,gBAAgB,CAAA;QACxB,OAAO,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,KAAK,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,CAAA;IAC3C,CAAC;IACD,OAAO;QACL,EAAE,KAAK,EAAE,6BAA6B,EAAE,OAAO,EAAE,eAAe,EAAE;QAClE,EAAE,KAAK,EAAE,uBAAuB,EAAE,OAAO,EAAE,gBAAgB,EAAE;QAC7D,EAAE,KAAK,EAAE,eAAe,EAAE,OAAO,EAAE,gBAAgB,EAAE;KACtD,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;AACrC,CAAC;AAED,8DAA8D;AAC9D,MAAM,UAAU,GAAG,EAAE,CAAA;AAErB,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxC,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAA;IAChE,MAAM,GAAG,GAAG,WAAW,CAAC,KAAK,CAAC,CAAA;IAC9B,MAAM,MAAM,GAAG,MAAM,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAA;IAC1C,MAAM,MAAM,GAAG,GAAG;SACf,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QACT,GAAG,CAAC;QACJ,OAAO,EAAE,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;KACvE,CAAC,CAAC;SACF,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IACpC,MAAM,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IAC9D,MAAM,IAAI,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,UAAU,CAAA;IACxE,OAAO,CACL;QACG,IAAI,CAAC,CAAC,CAAC,CACN;YACE,oBAAC,SAAS,IACR,IAAI,EAAC,OAAO,EACZ,WAAW,EAAC,eAAe,EAC3B,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBAC/B,CAAC,EACD,SAAS,SACT;YACF,oBAAC,GAAG,IAAC,EAAE,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;gBAC1B,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAA;oBACtC,CAAC,eAGM;gBACT,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAA;oBACvC,CAAC,eAGM,CACL,CACL,CACJ,CAAC,CAAC,CAAC,IAAI;QACP,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC,CAClC,oBAAC,GAAG,IAAC,GAAG,EAAE,KAAK;YACZ,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CACnB,oBAAC,UAAU,IAAC,OAAO,EAAC,SAAS,EAAC,KAAK,EAAC,gBAAgB,IACjD,KAAK,CACK,CACd,CAAC,CAAC,CAAC,IAAI;YACP,OAAO,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,CAC9B,oBAAC,gBAAgB,IACf,GAAG,EAAE,EAAE,EACP,EAAE,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,EACvB,OAAO,EACL,oBAAC,QAAQ,IACP,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,EACtB,QAAQ,EAAE,GAAG,EAAE;wBACb,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;oBACvB,CAAC,EACD,EAAE,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,GAChB,EAEJ,KAAK,EAAE,KAAK,EACZ,SAAS,EAAE,EAAE,UAAU,EAAE,EAAE,OAAO,EAAE,OAAO,EAAE,EAAE,GAC/C,CACH,CAAC,CACE,CACP,CAAC;QACD,MAAM,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CACrB,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,uBAA8B,CAC1D,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}
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@@ -93,7 +93,8 @@ const TrackTooltipContent = observer(function ({ model, track, col, }) {
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case 'logo': {
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return React.createElement(LogoTooltip, { model: model, col: col });
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}
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case 'text':
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case 'text':
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case 'reference': {
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return React.createElement(TextTooltip, { model: model, track: track, col: col });
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}
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case 'arc': {
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@@ -1 +1 @@
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-
{"version":3,"file":"TrackTooltipContent.js","sourceRoot":"","sources":["../../../src/components/tracks/TrackTooltipContent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAA;AAKhD,MAAM,GAAG,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,CAAA;AAEpD,MAAM,YAAY,GAAG,CAAC,CAAA;AAEtB,SAAS,WAAW,CAAC,EAAE,KAAK,EAAE,GAAG,EAAwC;IACvE,MAAM,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC5B,MAAM,GAAG,GAAG,UAAU;QACpB,CAAC,CAAC,KAAK,CAAC,0BAA0B,CAAC,UAAU,EAAE,GAAG,CAAC;QACnD,CAAC,CAAC,SAAS,CAAA;IACb,OAAO,CACL;;QACU,GAAG,GAAG,CAAC;QACd,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,KAAK,UAAU,IAAI,GAAG,GAAG,CACnD,CACL,CAAA;AACH,CAAC;AAED,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,KAAK,EACL,GAAG,GAKJ;IACC,MAAM,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAChC,MAAM,KAAK,GAAG,cAAc,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAA;IAC5C,OAAO,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAClC;QACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI;QACvC,+BAAM;QACL,IAAI;;QAAI,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CACrB,CACP,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAC,EAAE,KAAK,EAAE,GAAG,EAAwC;IACvE,MAAM,KAAK,GAAG,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,OAAO,IAAI,CAAA;IACb,CAAC;IACD,MAAM,EAAE,KAAK,EAAE,eAAe,EAAE,iBAAiB,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACxE,MAAM,KAAK,GAAG,eAAe,CAAC,KAAK,CAAC,QAAQ,EAAE,GAAG,EAAE,KAAK,CAAC,eAAe,CAAC,CAAA;IACzE,MAAM,IAAI,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;IAClD,OAAO,CACL;QACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI;;QAAG,KAAK;;QAC/C,+BAAM;;QACQ,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC;;QAC7B,+BAAM;;QACM,eAAe,IAAI,GAAG;;QAAI,GAAG,CAAC,iBAAiB,CAAC;;QAC5D,+BAAM;;QACC,GAAG,CAAC,WAAW,CAAC;QACvB,+BAAM;QACL,KAAK,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CACvD,8BAAM,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,WAAW,EAAE,CAAC,EAAE;YACzC,MAAM;;YAAG,GAAG,CAAC,KAAK,GAAG,KAAK,CAAC,CACvB,CACR,CAAC,CACE,CACP,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAC,EACnB,KAAK,EACL,KAAK,EACL,GAAG,GAKJ;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAClC,MAAM,MAAM,GAAG,IAAI,EAAE,CAAC,GAAG,CAAC,CAAA;IAC1B,OAAO,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CACnC;QACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI;QACvC,+BAAM;QACL,IAAI;;QAAI,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CACtC,CACP,CAAA;AACH,CAAC;AAED,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,KAAK,EACL,GAAG,GAKJ;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAClC,MAAM,QAAQ,GAAG,CAAC,IAAI,IAAI,EAAE,CAAC;SAC1B,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,KAAK,GAAG,IAAI,GAAG,CAAC,GAAG,KAAK,GAAG,CAAC;SACnD,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,KAAK,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;IAC5D,OAAO,QAAQ,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CACpC;QACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI;QACvC,+BAAM;QACL,IAAI;;QAAe,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;QAC7D,QAAQ,CAAC,MAAM,GAAG,YAAY,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAC1C,CACP,CAAA;AACH,CAAC;AAED;;;;;GAKG;AACH,MAAM,mBAAmB,GAAG,QAAQ,CAAC,UAAU,EAC7C,KAAK,EACL,KAAK,EACL,GAAG,GAKJ;IACC,QAAQ,KAAK,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC;QACzB,KAAK,KAAK,EAAE,CAAC;YACX,OAAO,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI,CAAA;QAC7D,CAAC;QACD,KAAK,MAAM,EAAE,CAAC;YACZ,OAAO,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI,CAAA;QAChD,CAAC;QACD,KAAK,MAAM,EAAE,CAAC;
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+
{"version":3,"file":"TrackTooltipContent.js","sourceRoot":"","sources":["../../../src/components/tracks/TrackTooltipContent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAA;AAKhD,MAAM,GAAG,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,CAAA;AAEpD,MAAM,YAAY,GAAG,CAAC,CAAA;AAEtB,SAAS,WAAW,CAAC,EAAE,KAAK,EAAE,GAAG,EAAwC;IACvE,MAAM,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC5B,MAAM,GAAG,GAAG,UAAU;QACpB,CAAC,CAAC,KAAK,CAAC,0BAA0B,CAAC,UAAU,EAAE,GAAG,CAAC;QACnD,CAAC,CAAC,SAAS,CAAA;IACb,OAAO,CACL;;QACU,GAAG,GAAG,CAAC;QACd,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,KAAK,UAAU,IAAI,GAAG,GAAG,CACnD,CACL,CAAA;AACH,CAAC;AAED,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,KAAK,EACL,GAAG,GAKJ;IACC,MAAM,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAChC,MAAM,KAAK,GAAG,cAAc,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAA;IAC5C,OAAO,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAClC;QACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI;QACvC,+BAAM;QACL,IAAI;;QAAI,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CACrB,CACP,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAC,EAAE,KAAK,EAAE,GAAG,EAAwC;IACvE,MAAM,KAAK,GAAG,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,CAAA;IACtC,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,OAAO,IAAI,CAAA;IACb,CAAC;IACD,MAAM,EAAE,KAAK,EAAE,eAAe,EAAE,iBAAiB,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACxE,MAAM,KAAK,GAAG,eAAe,CAAC,KAAK,CAAC,QAAQ,EAAE,GAAG,EAAE,KAAK,CAAC,eAAe,CAAC,CAAA;IACzE,MAAM,IAAI,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;IAClD,OAAO,CACL;QACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI;;QAAG,KAAK;;QAC/C,+BAAM;;QACQ,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC;;QAC7B,+BAAM;;QACM,eAAe,IAAI,GAAG;;QAAI,GAAG,CAAC,iBAAiB,CAAC;;QAC5D,+BAAM;;QACC,GAAG,CAAC,WAAW,CAAC;QACvB,+BAAM;QACL,KAAK,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CACvD,8BAAM,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,WAAW,EAAE,CAAC,EAAE;YACzC,MAAM;;YAAG,GAAG,CAAC,KAAK,GAAG,KAAK,CAAC,CACvB,CACR,CAAC,CACE,CACP,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAC,EACnB,KAAK,EACL,KAAK,EACL,GAAG,GAKJ;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAClC,MAAM,MAAM,GAAG,IAAI,EAAE,CAAC,GAAG,CAAC,CAAA;IAC1B,OAAO,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CACnC;QACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI;QACvC,+BAAM;QACL,IAAI;;QAAI,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CACtC,CACP,CAAA;AACH,CAAC;AAED,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,KAAK,EACL,GAAG,GAKJ;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAClC,MAAM,QAAQ,GAAG,CAAC,IAAI,IAAI,EAAE,CAAC;SAC1B,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,KAAK,GAAG,IAAI,GAAG,CAAC,GAAG,KAAK,GAAG,CAAC;SACnD,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,KAAK,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;IAC5D,OAAO,QAAQ,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CACpC;QACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI;QACvC,+BAAM;QACL,IAAI;;QAAe,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;QAC7D,QAAQ,CAAC,MAAM,GAAG,YAAY,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAC1C,CACP,CAAA;AACH,CAAC;AAED;;;;;GAKG;AACH,MAAM,mBAAmB,GAAG,QAAQ,CAAC,UAAU,EAC7C,KAAK,EACL,KAAK,EACL,GAAG,GAKJ;IACC,QAAQ,KAAK,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC;QACzB,KAAK,KAAK,EAAE,CAAC;YACX,OAAO,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI,CAAA;QAC7D,CAAC;QACD,KAAK,MAAM,EAAE,CAAC;YACZ,OAAO,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI,CAAA;QAChD,CAAC;QACD,KAAK,MAAM,CAAC;QACZ,KAAK,WAAW,EAAE,CAAC;YACjB,OAAO,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI,CAAA;QAC9D,CAAC;QACD,KAAK,KAAK,EAAE,CAAC;YACX,OAAO,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI,CAAA;QAC7D,CAAC;QACD,KAAK,OAAO,EAAE,CAAC;YACb,OAAO,CACL;gBACE,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,GAAI,CACnC,CACP,CAAA;QACH,CAAC;IACH,CAAC;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,mBAAmB,CAAA"}
|
|
@@ -1,6 +1,7 @@
|
|
|
1
1
|
import { columnLogoStack } from '../../sequenceLogo.js';
|
|
2
2
|
import { setFontSize } from '../../setFontSize.js';
|
|
3
3
|
import { contrastTextFn } from '../../util.js';
|
|
4
|
+
import { tileColorFn } from '../msa/tileColor.js';
|
|
4
5
|
import { visibleColRange } from '../msa/visibleColRange.js';
|
|
5
6
|
function drawConservationBars({ ctx, values, color, colWidth, trackHeight, offsetX, blockSize, }) {
|
|
6
7
|
const { xStart, xEnd } = visibleColRange({
|
|
@@ -60,7 +61,7 @@ function drawArcs({ ctx, arcs, color, colWidth, trackHeight, offsetX, blockSize,
|
|
|
60
61
|
ctx.stroke();
|
|
61
62
|
}
|
|
62
63
|
}
|
|
63
|
-
function drawTextTrackContent({ ctx, data,
|
|
64
|
+
function drawTextTrackContent({ ctx, data, colorAt, contrastText, bgColor, drawLetters, colWidth, rowHeight, offsetX, blockSize, }) {
|
|
64
65
|
const { xStart, xEnd } = visibleColRange({
|
|
65
66
|
offsetX,
|
|
66
67
|
blockWidth: blockSize,
|
|
@@ -69,9 +70,9 @@ function drawTextTrackContent({ ctx, data, colorScheme, contrastText, bgColor, d
|
|
|
69
70
|
const str = data?.slice(xStart, xEnd);
|
|
70
71
|
for (let i = 0; str && i < str.length; i++) {
|
|
71
72
|
const letter = str[i];
|
|
72
|
-
const
|
|
73
|
-
const fill = bgColor ?
|
|
74
|
-
const x =
|
|
73
|
+
const col = xStart + i;
|
|
74
|
+
const fill = bgColor ? colorAt(col, letter) : undefined;
|
|
75
|
+
const x = col * colWidth;
|
|
75
76
|
if (fill) {
|
|
76
77
|
ctx.fillStyle = fill;
|
|
77
78
|
ctx.fillRect(x, 0, colWidth, rowHeight);
|
|
@@ -259,15 +260,21 @@ export function drawTrackBlock({ model, ctx, track, offsetX, offsetY = 0, theme,
|
|
|
259
260
|
});
|
|
260
261
|
break;
|
|
261
262
|
}
|
|
262
|
-
case 'text':
|
|
263
|
+
case 'text':
|
|
264
|
+
case 'reference': {
|
|
263
265
|
const { bgColor, fontSize, rowHeight, showMsaLetters } = model;
|
|
266
|
+
const scheme = customColorScheme ?? model.colorScheme;
|
|
264
267
|
ctx.textAlign = 'center';
|
|
265
268
|
ctx.textBaseline = 'middle';
|
|
266
269
|
setFontSize(ctx, fontSize);
|
|
267
270
|
drawTextTrackContent({
|
|
268
271
|
ctx,
|
|
269
272
|
data,
|
|
270
|
-
|
|
273
|
+
// the reference row takes its colors from the alignment's own
|
|
274
|
+
// scheme, per column under a dynamic one
|
|
275
|
+
colorAt: kind === 'reference'
|
|
276
|
+
? tileColorFn(model)
|
|
277
|
+
: (_col, letter) => scheme[letter.toUpperCase()],
|
|
271
278
|
contrastText: contrastTextFn(theme),
|
|
272
279
|
bgColor,
|
|
273
280
|
drawLetters: showMsaLetters,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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+
{"version":3,"file":"drawTracks.js","sourceRoot":"","sources":["../../../src/components/tracks/drawTracks.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAA;AAClD,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAA;AAC9C,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAA;AACjD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAQ3D,SAAS,oBAAoB,CAAC,EAC5B,GAAG,EACH,MAAM,EACN,KAAK,EACL,QAAQ,EACR,WAAW,EACX,OAAO,EACP,SAAS,GASV;IACC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,SAAS;QACrB,QAAQ;KACT,CAAC,CAAA;IAEF,GAAG,CAAC,SAAS,GAAG,KAAK,CAAA;IACrB,KAAK,IAAI,CAAC,GAAG,MAAM,EAAE,CAAC,GAAG,IAAI,IAAI,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACxD,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;QACxB,MAAM,SAAS,GAAG,KAAK,GAAG,WAAW,CAAA;QACrC,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAA;QACtB,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,WAAW,GAAG,SAAS,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;IAC/D,CAAC;AACH,CAAC;AAED,gFAAgF;AAChF,yBAAyB;AACzB,MAAM,UAAU,cAAc,CAAC,KAAmB,EAAE,OAAe;IACjE,MAAM,QAAQ,GAAG,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,MAAM,CAAA;IAC9D,IAAI,QAAQ,EAAE,CAAC;QACb,OAAO,QAAQ,CAAA;IACjB,CAAC;IACD,OAAO,OAAO,KAAK,uBAAuB;QACxC,CAAC,CAAC,KAAK,CAAC,oBAAoB;QAC5B,CAAC,CAAC,KAAK,CAAC,YAAY,CAAA;AACxB,CAAC;AAED,gFAAgF;AAChF,8DAA8D;AAC9D,SAAS,QAAQ,CAAC,EAChB,GAAG,EACH,IAAI,EACJ,KAAK,EACL,QAAQ,EACR,WAAW,EACX,OAAO,EACP,SAAS,GASV;IACC,IAAI,CAAC,IAAI,EAAE,MAAM,EAAE,CAAC;QAClB,OAAM;IACR,CAAC;IACD,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,SAAS;QACrB,QAAQ;KACT,CAAC,CAAA;IACF,IAAI,OAAO,GAAG,CAAC,CAAA;IACf,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,CAAC,GAAG,GAAG,GAAG,CAAC,KAAK,CAAC,CAAA;IAClD,CAAC;IACD,iEAAiE;IACjE,MAAM,QAAQ,GAAG,WAAW,GAAG,CAAC,CAAA;IAChC,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;IACjB,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,0EAA0E;QAC1E,IAAI,GAAG,CAAC,GAAG,GAAG,MAAM,IAAI,GAAG,CAAC,KAAK,GAAG,IAAI,EAAE,CAAC;YACzC,SAAQ;QACV,CAAC;QACD,MAAM,EAAE,GAAG,CAAC,GAAG,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,QAAQ,CAAA;QACvC,MAAM,EAAE,GAAG,CAAC,GAAG,CAAC,GAAG,GAAG,GAAG,CAAC,GAAG,QAAQ,CAAA;QACrC,MAAM,IAAI,GAAG,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC,CAAA;QAClE,GAAG,CAAC,WAAW,GAAG,GAAG,CAAC,KAAK,IAAI,KAAK,CAAA;QACpC,GAAG,CAAC,SAAS,EAAE,CAAA;QACf,GAAG,CAAC,MAAM,CAAC,EAAE,EAAE,WAAW,CAAC,CAAA;QAC3B,GAAG,CAAC,gBAAgB,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,EAAE,WAAW,GAAG,CAAC,GAAG,IAAI,EAAE,EAAE,EAAE,WAAW,CAAC,CAAA;QAC5E,GAAG,CAAC,MAAM,EAAE,CAAA;IACd,CAAC;AACH,CAAC;AAED,SAAS,oBAAoB,CAAC,EAC5B,GAAG,EACH,IAAI,EACJ,OAAO,EACP,YAAY,EACZ,OAAO,EACP,WAAW,EACX,QAAQ,EACR,SAAS,EACT,OAAO,EACP,SAAS,GAYV;IACC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,SAAS;QACrB,QAAQ;KACT,CAAC,CAAA;IACF,MAAM,GAAG,GAAG,IAAI,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAErC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,IAAI,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QAC3C,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAE,CAAA;QACtB,MAAM,GAAG,GAAG,MAAM,GAAG,CAAC,CAAA;QACtB,MAAM,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;QACvD,MAAM,CAAC,GAAG,GAAG,GAAG,QAAQ,CAAA;QACxB,IAAI,IAAI,EAAE,CAAC;YACT,GAAG,CAAC,SAAS,GAAG,IAAI,CAAA;YACpB,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;QACzC,CAAC;QACD,IAAI,WAAW,EAAE,CAAC;YAChB,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;YAClC,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,QAAQ,GAAG,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,CAAA;QACvD,CAAC;IACH,CAAC;AACH,CAAC;AAED,qEAAqE;AACrE,MAAM,UAAU,SAAS,CAAC,QAAgB,EAAE,SAAS,GAAG,EAAE;IACxD,IAAI,IAAI,GAAG,CAAC,CAAA;IACZ,MAAM,SAAS,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC3B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,IAAI,GAAG,QAAQ,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;QACjD,IAAI,GAAG,SAAS,CAAC,CAAC,GAAG,CAAC,CAAE,GAAG,EAAE,IAAI,IAAI,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;IACpD,CAAC;IACD,OAAO,IAAI,CAAA;AACb,CAAC;AAED,4EAA4E;AAC5E,+EAA+E;AAC/E,8EAA8E;AAC9E,cAAc;AACd,MAAM,UAAU,SAAS,CAAC,MAAc,EAAE,GAAW,EAAE,QAAgB;IACrE,MAAM,IAAI,GAAG,SAAS,CAAC,QAAQ,CAAC,CAAA;IAChC,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,IAAI,MAAM,IAAI,CAAC,IAAI,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;IAC1D,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,IAAI,CAAA;IAChE,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,IAAI,GAAG,EAAE,CAAC,IAAI,IAAI,EAAE,CAAC;QACxC,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;IAClB,CAAC;IACD,OAAO,IAAI,CAAA;AACb,CAAC;AAED,MAAM,eAAe,GAAG,EAAE,CAAA;AAC1B,MAAM,WAAW,GAAG,CAAC,CAAA;AAErB,SAAS,eAAe,CAAC,EACvB,GAAG,EACH,UAAU,EACV,KAAK,EACL,SAAS,EACT,QAAQ,EACR,WAAW,EACX,OAAO,EACP,SAAS,GAUV;IACC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,SAAS;QACrB,QAAQ;KACT,CAAC,CAAA;IACF,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,UAAU,CAAC,CAAA;IACtC,WAAW,CAAC,GAAG,EAAE,eAAe,CAAC,CAAA;IACjC,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;IACxB,GAAG,CAAC,YAAY,GAAG,YAAY,CAAA;IAC/B,GAAG,CAAC,SAAS,GAAG,SAAS,CAAA;IACzB,GAAG,CAAC,WAAW,GAAG,SAAS,CAAA;IAC3B,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;IAEjB,K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AAO;YACP,OAAO,EAAE,QAAQ;YACjB,KAAK;YACL,kBAAkB;YAClB,0BAA0B;SAC3B,CAAC,CAAA;QACF,QAAQ,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,CAAA;IAChC,CAAC;AACH,CAAC"}
|
package/dist/model.d.ts
CHANGED
|
@@ -1594,6 +1594,12 @@ declare function stateModelFactory({ maxInlineSnapshotBytes, }?: {
|
|
|
1594
1594
|
* and the alphabet, not on zoom
|
|
1595
1595
|
*/
|
|
1596
1596
|
readonly computedTrackModels: BasicTrack[];
|
|
1597
|
+
/**
|
|
1598
|
+
* #getter
|
|
1599
|
+
* the reference row (`relativeTo`) repeated above the alignment, so it
|
|
1600
|
+
* stays in view while the rows compared against it scroll
|
|
1601
|
+
*/
|
|
1602
|
+
readonly referenceTrackModels: BasicTrack[];
|
|
1597
1603
|
readonly tracks: BasicTrack[];
|
|
1598
1604
|
/**
|
|
1599
1605
|
* #getter
|
package/dist/model.js
CHANGED
|
@@ -2117,6 +2117,28 @@ function stateModelFactory({ maxInlineSnapshotBytes = defaultMaxInlineSnapshotBy
|
|
|
2117
2117
|
},
|
|
2118
2118
|
}));
|
|
2119
2119
|
},
|
|
2120
|
+
/**
|
|
2121
|
+
* #getter
|
|
2122
|
+
* the reference row (`relativeTo`) repeated above the alignment, so it
|
|
2123
|
+
* stays in view while the rows compared against it scroll
|
|
2124
|
+
*/
|
|
2125
|
+
get referenceTrackModels() {
|
|
2126
|
+
const { relativeTo } = self;
|
|
2127
|
+
const data = relativeTo === undefined ? undefined : self.columns.get(relativeTo);
|
|
2128
|
+
return relativeTo === undefined || data === undefined
|
|
2129
|
+
? []
|
|
2130
|
+
: [
|
|
2131
|
+
{
|
|
2132
|
+
model: {
|
|
2133
|
+
id: 'reference-row',
|
|
2134
|
+
name: relativeTo,
|
|
2135
|
+
kind: 'reference',
|
|
2136
|
+
data,
|
|
2137
|
+
height: self.rowHeight,
|
|
2138
|
+
},
|
|
2139
|
+
},
|
|
2140
|
+
];
|
|
2141
|
+
},
|
|
2120
2142
|
get tracks() {
|
|
2121
2143
|
return [
|
|
2122
2144
|
...this.adapterTrackModels,
|
|
@@ -2125,6 +2147,7 @@ function stateModelFactory({ maxInlineSnapshotBytes = defaultMaxInlineSnapshotBy
|
|
|
2125
2147
|
// every computed track reads the alignment's columns, and a tree, a
|
|
2126
2148
|
// GFF and a features panel draw a figure with none
|
|
2127
2149
|
...(self.numColumns > 0 ? this.computedTrackModels : []),
|
|
2150
|
+
...this.referenceTrackModels,
|
|
2128
2151
|
];
|
|
2129
2152
|
},
|
|
2130
2153
|
/**
|