react-msaview 9.1.0 → 9.2.0

package/dist/components/header/menuBarItems.js

@@ -0,0 +1,277 @@
+import { lazy } from 'react';
+import { maxNeighborJoiningRows, treeOrders } from '../../constants.js';
+import { canGoTo } from '../dialogs/GoToBox.js';
+import { scrollZoomLabel } from './ScrollZoomCheckbox.js';
+import { colorSchemeMenuItems } from './colorSchemeMenuItems.js';
+import { openAnnotationFileItem } from './getAnnotationsMenu.js';
+const AboutDialog = lazy(() => import('../dialogs/AboutDialog.js'));
+const ExportSVGDialog = lazy(() => import('../dialogs/ExportSVGDialog.js'));
+const GapThresholdDialog = lazy(() => import('../dialogs/GapThresholdDialog.js'));
+const GoToDialog = lazy(() => import('../dialogs/GoToDialog.js'));
+const HelpDialog = lazy(() => import('../dialogs/HelpDialog.js'));
+const MetadataDialog = lazy(() => import('../dialogs/MetadataDialog.js'));
+const tutorialsUrl = 'https://gmod.org/JBrowseMSA/tutorials/';
+function radio(label, checked, onClick) {
+    return { label, type: 'radio', checked, onClick };
+}
+function toggle(label, checked, set) {
+    return {
+        label,
+        type: 'checkbox',
+        checked,
+        onClick: () => {
+            set(!checked);
+        },
+    };
+}
+function action(label, onClick, disabled = false) {
+    return { label, onClick, disabled };
+}
+function subMenu(label, items, display) {
+    return { label, type: 'subMenu', subMenu: items, display };
+}
+function when(cond, items) {
+    return cond ? items : [];
+}
+export function fileMenuItems(model) {
+    return [
+        ...when(!!model.importForm, [
+            action('Open alignment…', () => {
+                model.reset();
+            }),
+        ]),
+        openAnnotationFileItem(model),
+        action('Export as SVG…', () => {
+            model.queueDialog(onClose => [ExportSVGDialog, { onClose, model }]);
+        }),
+        ...when(!model.tree.noTree, [
+            action('Export tree as Newick', () => {
+                model.exportNewick();
+            }),
+        ]),
+        action('Alignment info…', () => {
+            model.queueDialog(onClose => [MetadataDialog, { model, onClose }]);
+        }),
+    ];
+}
+function zoomSubMenu(model) {
+    return [
+        action('Zoom in', () => {
+            model.zoomIn();
+        }),
+        action('Zoom out', () => {
+            model.zoomOut();
+        }),
+        action('Fit to window', () => {
+            model.fit();
+        }),
+        action('Fit width', () => {
+            model.fitHorizontally();
+        }),
+        action('Fit height', () => {
+            model.fitVertically();
+        }),
+        action('Reset zoom', () => {
+            model.resetZoom();
+        }),
+        toggle(scrollZoomLabel, model.scrollZoom, arg => {
+            model.setScrollZoom(arg);
+        }),
+    ];
+}
+const gapPresets = [100, 90, 50];
+export function gapsSubMenu(model) {
+    const { hideGaps, allowedGappyness } = model;
+    const custom = hideGaps && !gapPresets.includes(allowedGappyness);
+    return [
+        subMenu('Gappy columns', [
+            radio('Show all columns', !hideGaps, () => {
+                model.setHideGaps(false);
+            }),
+            ...gapPresets.map(pct => radio(pct === 100 ? 'Hide columns of only gaps' : `Hide ≥${pct}% gaps`, hideGaps && allowedGappyness === pct, () => {
+                model.setHideGaps(true);
+                model.setAllowedGappyness(pct);
+            })),
+            {
+                ...radio(custom ? `Hide ≥${allowedGappyness}% gaps…` : 'Custom threshold…', custom, () => {
+                    model.setHideGaps(true);
+                    model.queueDialog(onClose => [
+                        GapThresholdDialog,
+                        { model, onClose },
+                    ]);
+                }),
+                keepMenuOpen: false,
+            },
+        ], 'select'),
+    ];
+}
+const treeOrderLabels = {
+    branchLength: 'By branch length',
+    input: 'Input order',
+    ladderize: 'Ladderize, small clades first',
+    ladderizeReverse: 'Ladderize, large clades first',
+};
+function outgroupLabel(outgroup) {
+    const [first, ...rest] = outgroup;
+    return rest.length === 0
+        ? `Outgroup ${first}`
+        : `Outgroup ${first} … ${rest.at(-1)}`;
+}
+export function treeSubMenu(model) {
+    const { drawTree, showBranchLen, labelsAlignRight, drawNodeLabels, drawLabels, treeAreaWidth, showTreeOverview, showTreeScaleBar, treeOrder, treeRoot, rotated, } = model;
+    return [
+        subMenu('Layout', [
+            radio('Phylogram', drawTree && showBranchLen, () => {
+                model.setDrawTree(true);
+                model.setShowBranchLen(true);
+            }),
+            radio('Cladogram', drawTree && !showBranchLen, () => {
+                model.setDrawTree(true);
+                model.setShowBranchLen(false);
+            }),
+            radio('Labels only', !drawTree, () => {
+                model.setDrawTree(false);
+            }),
+        ], 'segmented'),
+        toggle('Tree overview', showTreeOverview, arg => {
+            model.setShowTreeOverview(arg);
+        }),
+        toggle('Scale bar', showTreeScaleBar, arg => {
+            model.setShowTreeScaleBar(arg);
+        }),
+        subMenu('Order', [
+            ...treeOrders.map(order => radio(treeOrderLabels[order], treeOrder === order, () => {
+                model.setTreeOrder(order);
+            })),
+            ...when(rotated.length > 0, [
+                action('Undo rotations', () => {
+                    model.clearRotated();
+                }),
+            ]),
+        ], 'select'),
+        subMenu('Root', [
+            radio('Input root', treeRoot === undefined, () => {
+                model.setTreeRoot(undefined);
+            }),
+            radio('Midpoint', treeRoot === 'midpoint', () => {
+                model.setTreeRoot('midpoint');
+            }),
+            // "Reroot here" in a node's menu sets the outgroup, so this only
+            // reports it
+            ...when(typeof treeRoot === 'object', [
+                {
+                    ...radio(typeof treeRoot === 'object'
+                        ? outgroupLabel(treeRoot.outgroup)
+                        : '', true, () => { }),
+                    disabled: true,
+                },
+            ]),
+        ], 'select'),
+        subMenu('Labels', [
+            toggle('Tip labels', drawLabels, arg => {
+                model.setDrawLabels(arg);
+            }),
+            toggle('Internal node labels', drawNodeLabels, arg => {
+                model.setDrawNodeLabels(arg);
+            }),
+            toggle('Align right', labelsAlignRight, arg => {
+                model.setLabelsAlignRight(arg);
+            }),
+        ]),
+        ...when(treeAreaWidth !== undefined, [
+            action('Reset tree width', () => {
+                model.setTreeAreaWidth(undefined);
+            }),
+        ]),
+    ];
+}
+export function viewMenuItems(model) {
+    return [
+        ...when(canGoTo(model), [
+            action('Find row or column…', () => {
+                model.queueDialog(onClose => [GoToDialog, { model, onClose }]);
+            }),
+        ]),
+        subMenu('Zoom', zoomSubMenu(model)),
+    ];
+}
+export function trackSettingsItems(model) {
+    return [
+        toggle('Show track values on hover', model.showColumnStats, arg => {
+            model.setShowColumnStats(arg);
+        }),
+    ];
+}
+// the settings panel's toggles for how the alignment draws
+export function alignmentSettingsItems(model) {
+    return [
+        toggle('Show letters', model.drawMsaLetters, arg => {
+            model.setDrawMsaLetters(arg);
+        }),
+    ];
+}
+// who colors the cells comes first, since a scheme picked while the domains
+// fill them would otherwise change nothing on screen
+export function colorSettingsItems(model) {
+    const { cellFill, filteredAnnotations } = model;
+    return [
+        subMenu('Fill cells with', [
+            radio('Residues', cellFill === 'residue', () => {
+                model.setCellFill('residue');
+            }),
+            ...when(filteredAnnotations.length > 0, [
+                radio('Domains', cellFill === 'domain', () => {
+                    model.setShowDomains(true);
+                    model.setCellFill('domain');
+                }),
+            ]),
+            {
+                ...radio('Nothing', cellFill === 'none', () => {
+                    model.setCellFill('none');
+                }),
+                helpText: 'Color the letters instead',
+            },
+        ], 'segmented'),
+        {
+            type: 'subHeader',
+            label: cellFill === 'domain'
+                ? 'Residue scheme: picking one takes the cells back from the domains'
+                : 'Residue scheme',
+        },
+        ...colorSchemeMenuItems(model),
+    ];
+}
+function neighborJoiningItem(model) {
+    const rows = model.rowMap.size;
+    const tooManyRows = rows > maxNeighborJoiningRows;
+    return action(tooManyRows
+        ? `Build neighbor joining tree (over ${maxNeighborJoiningRows} rows, use FastTree)`
+        : model.noTree
+            ? 'Build neighbor joining tree'
+            : 'Replace with neighbor joining tree', () => {
+        try {
+            model.calculateNeighborJoiningTreeFromMSA();
+        }
+        catch (e) {
+            console.error('Failed to calculate NJ tree:', e);
+            model.addWarning(e instanceof Error ? e.message : String(e));
+        }
+    }, tooManyRows || rows < 2);
+}
+export function toolsMenuItems(model) {
+    return [neighborJoiningItem(model)];
+}
+export function helpMenuItems(model) {
+    return [
+        action('Mouse & keyboard…', () => {
+            model.queueDialog(onClose => [HelpDialog, { model, onClose }]);
+        }),
+        action('Tutorials', () => {
+            window.open(tutorialsUrl, '_blank', 'noopener,noreferrer');
+        }),
+        action('About & credits…', () => {
+            model.queueDialog(onClose => [AboutDialog, { onClose }]);
+        }),
+    ];
+}
+//# sourceMappingURL=menuBarItems.js.map

package/dist/components/header/menuBarItems.js.map

@@ -0,0 +1 @@
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package/dist/components/import/ImportForm.js

@@ -10,8 +10,8 @@ const ImportForm = observer(function ({ model }) {
     const [treeFile, setTreeFile] = useState();
     const [gffFile, setGffFile] = useState();
     const { error } = model;
-    return (React.createElement(Container, null,
-        React.createElement(Box, { sx: { width: '50%', [phone]: { width: '100%' } } },
+    return (React.createElement(Container, { sx: { pt: 2, pb: 3 } },
+        React.createElement(Box, { sx: { width: '50%', mb: 2, [phone]: { width: '100%' } } },
             error ? React.createElement(ErrorMessage, { error: error }) : null,
             React.createElement(Typography, null, "Open an MSA file (FASTA, Stockholm, Clustal, A3M or EMF format) and/or a tree file (Newick format)."),
             React.createElement(Typography, { color: "text.secondary" }, "An MSA alone or a tree alone is enough, and a Stockholm file with an embedded tree needs no separate tree file.")),
@@ -26,16 +26,22 @@ const ImportForm = observer(function ({ model }) {
                     gap: '16px',
                 },
             } },
-            React.createElement("div", null,
+            React.createElement(Box, { sx: {
+                    width: 400,
+                    display: 'flex',
+                    flexDirection: 'column',
+                    gap: 1.5,
+                    [phone]: { width: 'auto' },
+                } },
                 React.createElement("div", null,
                     React.createElement(Typography, null, "MSA file or URL"),
-                    React.createElement(FileSelector, { location: msaFile, setLocation: setMsaFile })),
+                    React.createElement(FileSelector, { inline: true, location: msaFile, setLocation: setMsaFile })),
                 React.createElement("div", null,
                     React.createElement(Typography, null, "Tree file or URL"),
-                    React.createElement(FileSelector, { location: treeFile, setLocation: setTreeFile })),
+                    React.createElement(FileSelector, { inline: true, location: treeFile, setLocation: setTreeFile })),
                 React.createElement("div", null,
                     React.createElement(Typography, null, "Annotation GFF file or URL (optional)"),
-                    React.createElement(FileSelector, { location: gffFile, setLocation: setGffFile }))),
+                    React.createElement(FileSelector, { inline: true, location: gffFile, setLocation: setGffFile }))),
             React.createElement("div", null,
                 React.createElement(Button, { onClick: () => {
                         try {

package/dist/components/import/ImportForm.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/components/import/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClE,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,kBAAkB,MAAM,yBAA0B,CAAA;AACzD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAA;AAKhC,MAAM,KAAK,GAAG,2BAA2B,CAAA;AAEzC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAEvB,OAAO,CACL,oBAAC,SAAS,IAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE;QAC7B,oBAAC,GAAG,IAAC,EAAE,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,EAAE;YACzD,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,8GAGE;YACb,oBAAC,UAAU,IAAC,KAAK,EAAC,gBAAgB,sHAGrB,CACT;QAEN,oBAAC,GAAG,IACF,EAAE,EAAE;gBACF,OAAO,EAAE,MAAM;gBACf,cAAc,EAAE,QAAQ;gBACxB,UAAU,EAAE,QAAQ;gBACpB,GAAG,EAAE,MAAM;gBACX,CAAC,KAAK,CAAC,EAAE;oBACP,aAAa,EAAE,QAAQ;oBACvB,UAAU,EAAE,SAAS;oBACrB,GAAG,EAAE,MAAM;iBACZ;aACF;YAED,oBAAC,GAAG,IACF,EAAE,EAAE;oBACF,KAAK,EAAE,GAAG;oBACV,OAAO,EAAE,MAAM;oBACf,aAAa,EAAE,QAAQ;oBACvB,GAAG,EAAE,GAAG;oBACR,CAAC,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE;iBAC3B;gBAED;oBACE,oBAAC,UAAU,0BAA6B;oBACxC,oBAAC,YAAY,IAAC,MAAM,QAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CAC/D;gBACN;oBACE,oBAAC,UAAU,2BAA8B;oBACzC,oBAAC,YAAY,IACX,MAAM,QACN,QAAQ,EAAE,QAAQ,EAClB,WAAW,EAAE,WAAW,GACxB,CACE;gBACN;oBACE,oBAAC,UAAU,gDAAmD;oBAC9D,oBAAC,YAAY,IAAC,MAAM,QAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CAC/D,CACF;YACN;gBACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;wBACZ,IAAI,CAAC;4BACH,IAAI,CAAC,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAA;wBACzC,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACnB,CAAC;oBACH,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,OAAO,IAAI,CAAC,QAAQ,WAGxB,CACL;YAEN;gBACE,oBAAC,UAAU,mBAAsB;gBACjC,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CAChC,CACF,CACI,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/components/minimap/Minimap.js

@@ -1,13 +1,13 @@
 import React, { useCallback } from 'react';
-import { useTheme } from '@mui/material';
 import { observer } from 'mobx-react';
+import { useCanvasTheme } from '../../darkReader.js';
 import { useCanvasAutorun } from '../../useCanvasAutorun.js';
 import DragHandle, { scrollbarThumbFill } from '../DragHandle.js';
 import { msaThumbnail } from '../msa/msaRaster.js';
-import { MINIMAP_BAR_HEIGHT, getMinimapLayout } from './minimapLayout.js';
+import { MINIMAP_BAR_HEIGHT, getMinimapLayout, minimapDomainRects, } from './minimapLayout.js';
 const Minimap = observer(function ({ model }) {
     const { minimapHeight, msaCanvasWidth, highResScaleFactor } = model;
-    const theme = useTheme();
+    const theme = useCanvasTheme();
     const { unit, s, w, polygonHeight, polygonPoints } = getMinimapLayout(model);
     // the whole alignment, sampled down to the bar
     const barWidth = Math.round(msaCanvasWidth * highResScaleFactor);
@@ -25,6 +25,10 @@ const Minimap = observer(function ({ model }) {
                 ctx.imageSmoothingEnabled = true;
                 ctx.drawImage(thumbnail, 0, 0, thumbnail.width, thumbnail.height, 0, 0, barWidth, barHeight);
             }
+            for (const r of minimapDomainRects(model, barWidth, barHeight)) {
+                ctx.fillStyle = r.fill;
+                ctx.fillRect(r.x, r.y, r.w, r.h);
+            }
         },
         width: barWidth,
         height: barHeight,

package/dist/components/minimap/Minimap.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Minimap.js","sourceRoot":"","sources":["../../../src/components/minimap/Minimap.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,OAAO,CAAA;AAE1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,UAAU,EAAE,EAAE,kBAAkB,EAAE,MAAM,kBAAmB,CAAA;AAClE,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAA;AAClD,OAAO,EACL,kBAAkB,EAClB,gBAAgB,EAChB,kBAAkB,GACnB,MAAM,oBAAoB,CAAA;AAI3B,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACnE,MAAM,EAAE,aAAa,EAAE,cAAc,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,KAAK,GAAG,cAAc,EAAE,CAAA;IAC9B,MAAM,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAA;IAE5E,+CAA+C;IAC/C,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,kBAAkB,CAAC,CAAA;IAChE,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,kBAAkB,GAAG,kBAAkB,CAAC,CAAA;IACrE,MAAM,GAAG,GAAG,gBAAgB,CAAC;QAC3B,IAAI,EAAE,GAAG,CAAC,EAAE;YACV,GAAG,CAAC,cAAc,EAAE,CAAA;YACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;YACxC,MAAM,SAAS,GAAG,YAAY,CAAC;gBAC7B,KAAK;gBACL,KAAK;gBACL,MAAM,EAAE,kBAAkB;aAC3B,CAAC,CAAA;YACF,IAAI,SAAS,EAAE,CAAC;gBACd,GAAG,CAAC,qBAAqB,GAAG,IAAI,CAAA;gBAChC,GAAG,CAAC,SAAS,CACX,SAAS,EACT,CAAC,EACD,CAAC,EACD,SAAS,CAAC,KAAK,EACf,SAAS,CAAC,MAAM,EAChB,CAAC,EACD,CAAC,EACD,QAAQ,EACR,SAAS,CACV,CAAA;YACH,CAAC;YACD,KAAK,MAAM,CAAC,IAAI,kBAAkB,CAAC,KAAK,EAAE,QAAQ,EAAE,SAAS,CAAC,EAAE,CAAC;gBAC/D,GAAG,CAAC,SAAS,GAAG,CAAC,CAAC,IAAI,CAAA;gBACtB,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;YAClC,CAAC;QACH,CAAC;QACD,KAAK,EAAE,QAAQ;QACf,MAAM,EAAE,SAAS;QACjB,IAAI,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC;KACrB,CAAC,CAAA;IAEF,MAAM,MAAM,GAAG,WAAW,CACxB,CAAC,KAAa,EAAE,WAAmB,EAAE,EAAE;QACrC,KAAK,CAAC,UAAU,CAAC,WAAW,GAAG,KAAK,GAAG,IAAI,CAAC,CAAA;IAC9C,CAAC,EACD,CAAC,KAAK,EAAE,IAAI,CAAC,CACd,CAAA;IAED,OAAO,CAIL,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,aAAa;YACrB,KAAK,EAAE,cAAc;YACrB,UAAU,EAAE,CAAC;SACd;QAED,gCACE,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,QAAQ,EACf,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,IAAI,IAAI,GAAG,CAAC,EAAE,CAAC;oBACnC,MAAM,CAAC,GACL,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,aAAa,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;oBAClE,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,cAAc,GAAG,CAAC,CAAC,CAAA;gBAClD,CAAC;YACH,CAAC,EACD,KAAK,EAAE;gBACL,OAAO,EAAE,OAAO;gBAChB,KAAK,EAAE,cAAc;gBACrB,MAAM,EAAE,kBAAkB;gBAC1B,SAAS,EAAE,YAAY;gBACvB,MAAM,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE;aACpD,GACD;QACF,oBAAC,UAAU,IACT,IAAI,EAAC,GAAG,EACR,OAAO,EAAC,OAAO,EACf,QAAQ,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,OAAO,EAC7B,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;gBACL,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;gBACpB,MAAM,EAAE,kBAAkB;gBAC1B,KAAK,EAAE,CAAC;aACT,GACD;QAEF,6BAAK,MAAM,EAAE,aAAa,EAAE,KAAK,EAAE,cAAc;YAC/C,iCAAS,IAAI,EAAE,kBAAkB,EAAE,MAAM,EAAE,aAAa,GAAI,CACxD,CACF,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,OAAO,CAAA"}

package/dist/components/minimap/MinimapSVG.js

@@ -1,7 +1,7 @@
 import React from 'react';
 import { scrollbarThumbFill } from '../DragHandle.js';
 import { canvasHref, msaThumbnail } from '../msa/msaRaster.js';
-import { MINIMAP_BAR_HEIGHT, getMinimapLayout } from './minimapLayout.js';
+import { MINIMAP_BAR_HEIGHT, getMinimapLayout, minimapDomainRects, } from './minimapLayout.js';
 // The static counterpart to Minimap, for the SVG export. renderToSvg drives it
 // through renderToStaticMarkup, so it reads the model once and never re-renders
 // -- no observer wrapper.
@@ -13,6 +13,7 @@ export default function MinimapSVG({ model, theme, }) {
     const href = canvasHref(msaThumbnail({ model, theme, height: MINIMAP_BAR_HEIGHT }));
     return (React.createElement(React.Fragment, null,
         href ? (React.createElement("image", { href: href, x: 0, y: 0, width: msaCanvasWidth, height: MINIMAP_BAR_HEIGHT, preserveAspectRatio: "none" })) : null,
+        minimapDomainRects(model, msaCanvasWidth, MINIMAP_BAR_HEIGHT).map(({ x, y, w, h, fill }) => (React.createElement("rect", { key: `${x},${y},${w},${fill}`, x: x, y: y, width: w, height: h, fill: fill }))),
         React.createElement("rect", { x: 0, y: 0, width: msaCanvasWidth, height: MINIMAP_BAR_HEIGHT, stroke: theme.palette.text.secondary, fill: "none" }),
         React.createElement("rect", { x: Math.max(0, s), y: 0, width: w, height: MINIMAP_BAR_HEIGHT, fill: scrollbarThumbFill, stroke: theme.palette.text.secondary }),
         React.createElement("g", { transform: `translate(0 ${MINIMAP_BAR_HEIGHT})` },

package/dist/components/minimap/MinimapSVG.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MinimapSVG.js","sourceRoot":"","sources":["../../../src/components/minimap/MinimapSVG.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,kBAAkB,EAAE,MAAM,kBAAmB,CAAA;AACtD,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAA;AAC9D,OAAO,EACL,kBAAkB,EAClB,gBAAgB,EAChB,kBAAkB,GACnB,MAAM,oBAAoB,CAAA;AAK3B,+EAA+E;AAC/E,gFAAgF;AAChF,0BAA0B;AAC1B,MAAM,CAAC,OAAO,UAAU,UAAU,CAAC,EACjC,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,MAAM,EAAE,CAAC,EAAE,CAAC,EAAE,aAAa,EAAE,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAA;IACvD,0EAA0E;IAC1E,0EAA0E;IAC1E,MAAM,IAAI,GAAG,UAAU,CACrB,YAAY,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,kBAAkB,EAAE,CAAC,CAC3D,CAAA;IAED,OAAO,CACL;QACG,IAAI,CAAC,CAAC,CAAC,CACN,+BACE,IAAI,EAAE,IAAI,EACV,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,cAAc,EACrB,MAAM,EAAE,kBAAkB,EAC1B,mBAAmB,EAAC,MAAM,GAC1B,CACH,CAAC,CAAC,CAAC,IAAI;QACP,kBAAkB,CAAC,KAAK,EAAE,cAAc,EAAE,kBAAkB,CAAC,CAAC,GAAG,CAChE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,CAAC,CACxB,8BACE,GAAG,EAAE,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,IAAI,EAAE,EAC7B,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,CAAC,EACR,MAAM,EAAE,CAAC,EACT,IAAI,EAAE,IAAI,GACV,CACH,CACF;QACD,8BACE,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,cAAc,EACrB,MAAM,EAAE,kBAAkB,EAC1B,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS,EACpC,IAAI,EAAC,MAAM,GACX;QACF,8BACE,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EACjB,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,CAAC,EACR,MAAM,EAAE,kBAAkB,EAC1B,IAAI,EAAE,kBAAkB,EACxB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS,GACpC;QACF,2BAAG,SAAS,EAAE,eAAe,kBAAkB,GAAG;YAChD,iCAAS,IAAI,EAAE,kBAAkB,EAAE,MAAM,EAAE,aAAa,GAAI,CAC1D,CACH,CACJ,CAAA;AACH,CAAC"}

package/dist/components/minimap/minimapLayout.d.ts

@@ -13,3 +13,15 @@ export declare function getMinimapLayout(model: MsaViewModel): {
     polygonHeight: number;
     polygonPoints: string;
 };
+/**
+ * The domain overlay's boxes scaled onto the minimap bar, one per row's band,
+ * in the colors the alignment draws them, so the overview shows the domains
+ * the alignment does. Empty unless the domains fill the cells.
+ */
+export declare function minimapDomainRects(model: MsaViewModel, width: number, height: number): {
+    x: number;
+    y: number;
+    w: number;
+    h: number;
+    fill: string;
+}[];

package/dist/components/minimap/minimapLayout.js

@@ -16,4 +16,24 @@ export function getMinimapLayout(model) {
     const polygonPoints = `${s + w},0 ${s},0 0,${polygonHeight} ${msaCanvasWidth},${polygonHeight}`;
     return { unit, s, w, polygonHeight, polygonPoints };
 }
+/**
+ * The domain overlay's boxes scaled onto the minimap bar, one per row's band,
+ * in the colors the alignment draws them, so the overview shows the domains
+ * the alignment does. Empty unless the domains fill the cells.
+ */
+export function minimapDomainRects(model, width, height) {
+    const { cellFill, domainBands, featureColors, leaves, numColumns } = model;
+    if (cellFill !== 'domain' || numColumns <= 0 || leaves.length === 0) {
+        return [];
+    }
+    const colUnit = width / numColumns;
+    const rowUnit = height / leaves.length;
+    return leaves.flatMap((leaf, row) => (domainBands.get(leaf.data.name) ?? []).map(band => ({
+        x: band.startCol * colUnit,
+        y: row * rowUnit,
+        w: Math.max(1, (band.endCol - band.startCol) * colUnit),
+        h: Math.max(1, rowUnit),
+        fill: featureColors.get(band.annotation)?.fill ?? 'grey',
+    })));
+}
 //# sourceMappingURL=minimapLayout.js.map

package/dist/components/minimap/minimapLayout.js.map

@@ -1 +1 @@
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+{"version":3,"file":"minimapLayout.js","sourceRoot":"","sources":["../../../src/components/minimap/minimapLayout.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,kBAAkB,GAAG,EAAE,CAAA;AAEpC;;;;;GAKG;AACH,MAAM,UAAU,gBAAgB,CAAC,KAAmB;IAClD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,UAAU,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IACpE,MAAM,IAAI,GAAG,UAAU,GAAG,CAAC,CAAC,CAAC,CAAC,cAAc,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC,CAAA;IAC7D,MAAM,CAAC,GAAG,CAAC,OAAO,GAAG,IAAI,CAAA;IACzB,6EAA6E;IAC7E,4BAA4B;IAC5B,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,cAAc,EAAE,IAAI,CAAC,GAAG,CAAC,cAAc,GAAG,IAAI,EAAE,EAAE,CAAC,CAAC,CAAA;IACvE,MAAM,aAAa,GAAG,aAAa,GAAG,kBAAkB,CAAA;IACxD,MAAM,aAAa,GAAG,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,QAAQ,aAAa,IAAI,cAAc,IAAI,aAAa,EAAE,CAAA;IAC/F,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC,EAAE,aAAa,EAAE,aAAa,EAAE,CAAA;AACrD,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,kBAAkB,CAChC,KAAmB,EACnB,KAAa,EACb,MAAc;IAEd,MAAM,EAAE,QAAQ,EAAE,WAAW,EAAE,aAAa,EAAE,MAAM,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC1E,IAAI,QAAQ,KAAK,QAAQ,IAAI,UAAU,IAAI,CAAC,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACpE,OAAO,EAAE,CAAA;IACX,CAAC;IACD,MAAM,OAAO,GAAG,KAAK,GAAG,UAAU,CAAA;IAClC,MAAM,OAAO,GAAG,MAAM,GAAG,MAAM,CAAC,MAAM,CAAA;IACtC,OAAO,MAAM,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE,CAClC,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACnD,CAAC,EAAE,IAAI,CAAC,QAAQ,GAAG,OAAO;QAC1B,CAAC,EAAE,GAAG,GAAG,OAAO;QAChB,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,GAAG,OAAO,CAAC;QACvD,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,OAAO,CAAC;QACvB,IAAI,EAAE,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC,UAAU,CAAC,EAAE,IAAI,IAAI,MAAM;KACzD,CAAC,CAAC,CACJ,CAAA;AACH,CAAC"}

package/dist/components/msa/MSACanvas.js

@@ -1,12 +1,20 @@
 import React, { useCallback, useRef } from 'react';
 import { observer } from 'mobx-react';
 import { useWheelScroll } from '../../useWheelScroll.js';
+import { zoomSnapshotScale } from '../../zoomSnapshot.js';
 import { alignmentAriaLabel } from '../controls.js';
 import Loading from './Loading.js';
 import MSACanvasBlock from './MSACanvasBlock.js';
+import { WheelZoomHint, useWheelZoomHint } from './WheelZoomHint.js';
 import { onMsaKey } from './msaKeys.js';
 const MSACanvas = observer(function ({ model }) {
-    const { MSA, msaFilehandle, height, msaCanvasWidth, blocks2d, scrollZoom, scrollX, scrollY, } = model;
+    const { MSA, msaFilehandle, height, msaCanvasWidth, blocks2d, scrollZoom, scrollX, scrollY, zoomSnapshot, } = model;
+    const blocks = zoomSnapshot
+        ? zoomSnapshot.blocksY.flatMap(by => zoomSnapshot.blocksX.map(bx => [bx, by]))
+        : blocks2d;
+    const scale = zoomSnapshot
+        ? zoomSnapshotScale(model, zoomSnapshot)
+        : undefined;
     const ref = useRef(null);
     const onScrollX = useCallback((d) => {
         model.doScrollX(d);
@@ -15,13 +23,19 @@ const MSACanvas = observer(function ({ model }) {
         model.doScrollY(d);
     }, [model]);
     const onZoom = useCallback((scaleFactor, offsetX, offsetY) => {
-        model.zoomToPos(scaleFactor, offsetX, offsetY, model.wheelZoomAxis);
+        model.wheelZoomToPos(scaleFactor, offsetX, offsetY);
     }, [model]);
+    const onZoomSettle = useCallback(() => {
+        model.endWheelZoom();
+    }, [model]);
+    const hint = useWheelZoomHint(model);
     const { onMouseDown, onMouseUp } = useWheelScroll({
         ref,
         onScrollX,
         onScrollY,
         onZoom,
+        onZoomSettle,
+        onWheelScroll: hint.onWheelScroll,
         scrollZoom,
     });
     return (React.createElement("div", { ref: ref, "data-testid": "msa_canvas", tabIndex: 0, "aria-label": alignmentAriaLabel, onKeyDown: event => {
@@ -44,13 +58,16 @@ const MSACanvas = observer(function ({ model }) {
             height,
             width: msaCanvasWidth,
             overflow: 'hidden',
-        } }, !MSA && !msaFilehandle ? null : MSA ? (React.createElement("div", { style: {
-            position: 'absolute',
-            top: 0,
-            left: 0,
-            transform: `translate(${scrollX}px, ${scrollY}px)`,
-            willChange: 'transform',
-        } }, blocks2d.map(([bx, by]) => (React.createElement(MSACanvasBlock, { key: `${bx}_${by}`, model: model, offsetX: bx, offsetY: by }))))) : (React.createElement(Loading, null))));
+        } },
+        !MSA && !msaFilehandle ? null : MSA ? (React.createElement("div", { style: {
+                position: 'absolute',
+                top: 0,
+                left: 0,
+                transform: `translate(${scrollX}px, ${scrollY}px)${scale ? ` scale(${scale.sx}, ${scale.sy})` : ''}`,
+                transformOrigin: '0 0',
+                willChange: 'transform',
+            } }, blocks.map(([bx, by]) => (React.createElement(MSACanvasBlock, { key: `${bx}_${by}`, model: model, offsetX: bx, offsetY: by }))))) : (React.createElement(Loading, null)),
+        hint.visible ? React.createElement(WheelZoomHint, null) : null));
 });
 export default MSACanvas;
 //# sourceMappingURL=MSACanvas.js.map

package/dist/components/msa/MSACanvas.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MSACanvas.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;AACxD,OAAO,EAAE,iBAAiB,EAAE,MAAM,uBAAuB,CAAA;AACzD,OAAO,EAAE,kBAAkB,EAAE,MAAM,gBAAgB,CAAA;AACnD,OAAO,OAAO,MAAM,cAAe,CAAA;AACnC,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,EAAE,aAAa,EAAE,gBAAgB,EAAE,MAAM,oBAAqB,CAAA;AACrE,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAA;AAIvC,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,EACJ,GAAG,EACH,aAAa,EACb,MAAM,EACN,cAAc,EACd,QAAQ,EACR,UAAU,EACV,OAAO,EACP,OAAO,EACP,YAAY,GACb,GAAG,KAAK,CAAA;IACT,MAAM,MAAM,GAAG,YAAY;QACzB,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC,EAAE,CAChC,YAAY,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,CAAU,CAAC,CAClD;QACH,CAAC,CAAC,QAAQ,CAAA;IACZ,MAAM,KAAK,GAAG,YAAY;QACxB,CAAC,CAAC,iBAAiB,CAAC,KAAK,EAAE,YAAY,CAAC;QACxC,CAAC,CAAC,SAAS,CAAA;IACb,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,MAAM,GAAG,WAAW,CACxB,CAAC,WAAmB,EAAE,OAAe,EAAE,OAAe,EAAE,EAAE;QACxD,KAAK,CAAC,cAAc,CAAC,WAAW,EAAE,OAAO,EAAE,OAAO,CAAC,CAAA;IACrD,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,YAAY,GAAG,WAAW,CAAC,GAAG,EAAE;QACpC,KAAK,CAAC,YAAY,EAAE,CAAA;IACtB,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IACX,MAAM,IAAI,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAA;IACpC,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,GAAG,cAAc,CAAC;QAChD,GAAG;QACH,SAAS;QACT,SAAS;QACT,MAAM;QACN,YAAY;QACZ,aAAa,EAAE,IAAI,CAAC,aAAa;QACjC,UAAU;KACX,CAAC,CAAA;IAEF,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBAGI,YAAY,EACxB,QAAQ,EAAE,CAAC,gBACC,kBAAkB,EAC9B,SAAS,EAAE,KAAK,CAAC,EAAE;YACjB,IAAI,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,CAAC;gBAC3B,KAAK,CAAC,cAAc,EAAE,CAAA;YACxB,CAAC;QACH,CAAC,EACD,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,oEAAoE;YACpE,sEAAsE;YACtE,iBAAiB;YACjB,IAAI,KAAK,CAAC,QAAQ,EAAE,CAAC;gBACnB,KAAK,CAAC,cAAc,EAAE,CAAA;gBACtB,GAAG,CAAC,OAAO,EAAE,KAAK,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAA;YAC7C,CAAC;iBAAM,CAAC;gBACN,WAAW,CAAC,KAAK,CAAC,CAAA;YACpB,CAAC;QACH,CAAC,EACD,SAAS,EAAE,SAAS,EACpB,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM;YACN,KAAK,EAAE,cAAc;YACrB,QAAQ,EAAE,QAAQ;SACnB;QAEA,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAGrC,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,SAAS,EAAE,aAAa,OAAO,OAAO,OAAO,MAAM,KAAK,CAAC,CAAC,CAAC,UAAU,KAAK,CAAC,EAAE,KAAK,KAAK,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;gBACpG,eAAe,EAAE,KAAK;gBACtB,UAAU,EAAE,WAAW;aACxB,IAEA,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CACxB,oBAAC,cAAc,IACb,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,EAClB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,EAAE,EACX,OAAO,EAAE,EAAE,GACX,CACH,CAAC,CACE,CACP,CAAC,CAAC,CAAC,CACF,oBAAC,OAAO,OAAG,CACZ;QACA,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,oBAAC,aAAa,OAAG,CAAC,CAAC,CAAC,IAAI,CACpC,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}

package/dist/components/msa/MSACanvasBlock.js

@@ -1,28 +1,31 @@
-import React from 'react';
+import React, { useRef } from 'react';
 import BaseTooltip from '@jbrowse/core/ui/BaseTooltip';
-import { useTheme } from '@mui/material';
 import { observer } from 'mobx-react';
+import { useCanvasTheme } from '../../darkReader.js';
 import { useCanvasAutorun } from '../../useCanvasAutorun.js';
 import { drawMsaRaster, rasterApplies } from './msaRaster.js';
-import { renderBoxFeatureCanvasBlock } from './renderBoxFeatureCanvasBlock.js';
 import { renderMSABlock } from './renderMSABlock.js';
 import { useMsaBlockMouse } from './useMsaBlockMouse.js';
 const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
     const { blockSize, highResScaleFactor } = model;
-    const theme = useTheme();
+    const theme = useCanvasTheme();
     const { anchor, onMouseMove, onMouseDown, onClick, onMouseLeave } = useMsaBlockMouse({ model, offsetX, offsetY });
     const canvasSize = blockSize * highResScaleFactor;
+    const drawnAt = useRef(undefined);
     const ref = useCanvasAutorun({
         draw: ctx => {
+            // during a wheel zoom MSACanvas scales what this block drew at the
+            // snapshot, so the block redraws only when a new snapshot is taken
+            const snap = model.zoomSnapshot;
+            if (snap &&
+                (snap === drawnAt.current ||
+                    snap.colWidth !== model.colWidth ||
+                    snap.rowHeight !== model.rowHeight)) {
+                return;
+            }
+            drawnAt.current = snap;
             ctx.resetTransform();
             ctx.clearRect(0, 0, canvasSize, canvasSize);
-            renderBoxFeatureCanvasBlock({
-                ctx,
-                theme,
-                offsetX,
-                offsetY,
-                model,
-            });
             const rasterTiles = rasterApplies(model);
             if (rasterTiles) {
                 drawMsaRaster({ ctx, model, theme, offsetX, offsetY });
@@ -34,6 +37,7 @@ const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
                 offsetY,
                 model,
                 rasterTiles,
+                domains: true,
             });
         },
         width: canvasSize,

package/dist/components/msa/MSACanvasBlock.js.map

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