react-msaview 9.1.0 → 9.1.1

package/dist/components/MetadataTable.js

@@ -1,29 +1,68 @@
 import React from 'react';
 import { makeStyles } from '@jbrowse/core/util/tss-react';
-import { Table, TableBody, TableCell, TableRow } from '@mui/material';
-const useStyles = makeStyles()({
+const useStyles = makeStyles()(theme => ({
+    list: {
+        display: 'grid',
+        gridTemplateColumns: 'minmax(8em, max-content) minmax(0, 1fr)',
+        columnGap: theme.spacing(3),
+        margin: 0,
+    },
+    row: {
+        display: 'contents',
+    },
     key: {
-        fontWeight: 'bold',
-        verticalAlign: 'top',
+        fontWeight: 600,
+        padding: theme.spacing(0.75, 0),
+        borderTop: `1px solid ${theme.palette.divider}`,
+    },
+    code: {
+        marginLeft: theme.spacing(1),
+        fontWeight: 400,
+        fontSize: '0.75em',
+        fontFamily: 'monospace',
+        color: theme.palette.text.secondary,
     },
     value: {
+        margin: 0,
+        padding: theme.spacing(0.75, 0),
+        borderTop: `1px solid ${theme.palette.divider}`,
         whiteSpace: 'pre-wrap',
-        wordBreak: 'break-word',
+        overflowWrap: 'anywhere',
+    },
+    mono: {
+        fontFamily: 'monospace',
+        fontSize: '0.85em',
+        maxHeight: '8em',
+        overflow: 'auto',
+    },
+    nested: {
+        '& > dl': {
+            paddingLeft: theme.spacing(2),
+            borderLeft: `2px solid ${theme.palette.divider}`,
+        },
     },
-});
-function isRecord(value) {
-    return typeof value === 'object' && value !== null && !Array.isArray(value);
+}));
+export function isRecord(value) {
+    return (typeof value === 'object' &&
+        value !== null &&
+        !Array.isArray(value) &&
+        !React.isValidElement(value));
 }
 export function isEmpty(value) {
     return isRecord(value) && Object.keys(value).length === 0;
 }
-export default function MetadataTable({ record, }) {
-    const { classes } = useStyles();
-    return (React.createElement(Table, { size: "small" },
-        React.createElement(TableBody, null, Object.entries(record)
-            .filter(([, value]) => value != null && !isEmpty(value))
-            .map(([key, value]) => (React.createElement(TableRow, { key: key },
-            React.createElement(TableCell, { component: "th", className: classes.key }, key),
-            React.createElement(TableCell, { className: classes.value }, isRecord(value) ? (React.createElement(MetadataTable, { record: value })) : Array.isArray(value) ? (value.join('\n')) : (String(value)))))))));
+export default function MetadataTable({ record, labels = {}, monospaceKeys, }) {
+    const { classes, cx } = useStyles();
+    return (React.createElement("dl", { className: classes.list }, Object.entries(record)
+        .filter(([, value]) => value != null && !isEmpty(value))
+        .map(([key, value]) => {
+        const label = labels[key];
+        const nested = isRecord(value);
+        return (React.createElement("div", { key: key, className: classes.row },
+            React.createElement("dt", { className: classes.key },
+                label ?? key,
+                label && label !== key ? (React.createElement("span", { className: classes.code }, key)) : null),
+            React.createElement("dd", { className: cx(classes.value, nested && classes.nested, monospaceKeys?.has(key) && classes.mono) }, nested ? (React.createElement(MetadataTable, { record: value, labels: labels, monospaceKeys: monospaceKeys })) : Array.isArray(value) ? (value.join('\n')) : React.isValidElement(value) ? (value) : (String(value)))));
+    })));
 }
 //# sourceMappingURL=MetadataTable.js.map

package/dist/components/MetadataTable.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MetadataTable.js","sourceRoot":"","sources":["../../src/components/MetadataTable.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AAEzD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,OAAO,EAAE,MAAM;QACf,mBAAmB,EAAE,yCAAyC;QAC9D,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC3B,MAAM,EAAE,CAAC;KACV;IACD,GAAG,EAAE;QACH,OAAO,EAAE,UAAU;KACpB;IACD,GAAG,EAAE;QACH,UAAU,EAAE,GAAG;QACf,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC;QAC/B,SAAS,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,OAAO,EAAE;KAChD;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC5B,UAAU,EAAE,GAAG;QACf,QAAQ,EAAE,QAAQ;QAClB,UAAU,EAAE,WAAW;QACvB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS;KACpC;IACD,KAAK,EAAE;QACL,MAAM,EAAE,CAAC;QACT,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC;QAC/B,SAAS,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,OAAO,EAAE;QAC/C,UAAU,EAAE,UAAU;QACtB,YAAY,EAAE,UAAU;KACzB;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,WAAW;QACvB,QAAQ,EAAE,QAAQ;QAClB,SAAS,EAAE,KAAK;QAChB,QAAQ,EAAE,MAAM;KACjB;IACD,MAAM,EAAE;QACN,QAAQ,EAAE;YACR,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,UAAU,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,OAAO,EAAE;SACjD;KACF;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,UAAU,QAAQ,CAAC,KAAc;IACrC,OAAO,CACL,OAAO,KAAK,KAAK,QAAQ;QACzB,KAAK,KAAK,IAAI;QACd,CAAC,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC;QACrB,CAAC,KAAK,CAAC,cAAc,CAAC,KAAK,CAAC,CAC7B,CAAA;AACH,CAAC;AAED,MAAM,UAAU,OAAO,CAAC,KAAc;IACpC,OAAO,QAAQ,CAAC,KAAK,CAAC,IAAI,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,MAAM,KAAK,CAAC,CAAA;AAC3D,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,aAAa,CAAC,EACpC,MAAM,EACN,MAAM,GAAG,EAAE,EACX,aAAa,GAKd;IACC,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,OAAO,CACL,4BAAI,SAAS,EAAE,OAAO,CAAC,IAAI,IACxB,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC;SACpB,MAAM,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,IAAI,IAAI,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;SACvD,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE;QACpB,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,CAAA;QACzB,MAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;QAC9B,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,CAAC,GAAG;YACnC,4BAAI,SAAS,EAAE,OAAO,CAAC,GAAG;gBACvB,KAAK,IAAI,GAAG;gBACZ,KAAK,IAAI,KAAK,KAAK,GAAG,CAAC,CAAC,CAAC,CACxB,8BAAM,SAAS,EAAE,OAAO,CAAC,IAAI,IAAG,GAAG,CAAQ,CAC5C,CAAC,CAAC,CAAC,IAAI,CACL;YACL,4BACE,SAAS,EAAE,EAAE,CACX,OAAO,CAAC,KAAK,EACb,MAAM,IAAI,OAAO,CAAC,MAAM,EACxB,aAAa,EAAE,GAAG,CAAC,GAAG,CAAC,IAAI,OAAO,CAAC,IAAI,CACxC,IAEA,MAAM,CAAC,CAAC,CAAC,CACR,oBAAC,aAAa,IACZ,MAAM,EAAE,KAAK,EACb,MAAM,EAAE,MAAM,EACd,aAAa,EAAE,aAAa,GAC5B,CACH,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CACzB,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CACjB,CAAC,CAAC,CAAC,KAAK,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAChC,KAAK,CACN,CAAC,CAAC,CAAC,CACF,MAAM,CAAC,KAAK,CAAC,CACd,CACE,CACD,CACP,CAAA;IACH,CAAC,CAAC,CACD,CACN,CAAA;AACH,CAAC"}

package/dist/components/Track.js

@@ -2,6 +2,7 @@ import React, { lazy, useCallback, useRef, useState } from 'react';
 import BaseTooltip from '@jbrowse/core/ui/BaseTooltip';
 import { makeStyles } from '@jbrowse/core/util/tss-react';
 import ArrowDropDownIcon from '@mui/icons-material/ArrowDropDown';
+import CloseIcon from '@mui/icons-material/Close';
 import { IconButton, Menu, MenuItem } from '@mui/material';
 import { observer } from 'mobx-react';
 import { useWheelScroll } from '../useWheelScroll.js';
@@ -35,6 +36,7 @@ const TrackLabel = observer(function TrackLabel({ model, track, }) {
     const { model: { name, height }, } = track;
     const { classes } = useStyles();
     const trackLabelHeight = Math.min(height, fontSize);
+    const closeSize = Math.min(height, Math.max(fontSize, 16));
     return (React.createElement("div", { style: {
             width,
             height,
@@ -50,6 +52,10 @@ const TrackLabel = observer(function TrackLabel({ model, track, }) {
                 textOverflow: 'ellipsis',
                 whiteSpace: 'nowrap',
             } }, drawLabels ? name : ''),
+        React.createElement(IconButton, { className: classes.button, "aria-label": `Hide ${name} track`, title: "Hide track", style: { width: closeSize, height: closeSize, flexShrink: 0 }, onClick: () => {
+                model.toggleTrack(track.model.id);
+            } },
+            React.createElement(CloseIcon, { style: { fontSize: closeSize * 0.8 } })),
         React.createElement(IconButton, { className: classes.button, "aria-label": `${name} track menu`, style: {
                 width: trackLabelHeight,
                 height: trackLabelHeight,

package/dist/components/Track.js.map

@@ -1 +1 @@
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package/dist/components/controls.js

@@ -8,6 +8,7 @@ export const keyboardControls = [
         shiftKey: true,
     },
     { label: '+ and -', action: 'Zoom in and out', keys: ['+', '=', '-'] },
+    { label: '0', action: 'Reset to the default cell size', keys: ['0'] },
     {
         label: 'Home and End',
         action: 'Jump to the first and last column',
@@ -23,7 +24,7 @@ export const mouseControls = [
     { label: 'Drag', action: 'Pan the alignment' },
     {
         label: 'Wheel',
-        action: 'Scroll, or zoom as set in Alignment settings → Mouse wheel',
+        action: 'Scroll, or zoom with Zoom on scroll checked',
     },
     { label: 'Ctrl + wheel', action: 'Zoom at the cursor' },
     selectCells,

package/dist/components/controls.js.map

@@ -1 +1 @@
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+{"version":3,"file":"controls.js","sourceRoot":"","sources":["../../src/components/controls.ts"],"names":[],"mappings":"AAUA,MAAM,MAAM,GAAG,CAAC,WAAW,EAAE,YAAY,EAAE,SAAS,EAAE,WAAW,CAAC,CAAA;AAElE,MAAM,CAAC,MAAM,gBAAgB,GAAiB;IAC5C,EAAE,KAAK,EAAE,YAAY,EAAE,MAAM,EAAE,iBAAiB,EAAE,IAAI,EAAE,MAAM,EAAE;IAChE;QACE,KAAK,EAAE,oBAAoB;QAC3B,MAAM,EAAE,iBAAiB;QACzB,IAAI,EAAE,MAAM;QACZ,QAAQ,EAAE,IAAI;KACf;IACD,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,iBAAiB,EAAE,IAAI,EAAE,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,EAAE;IACtE,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,EAAE,gCAAgC,EAAE,IAAI,EAAE,CAAC,GAAG,CAAC,EAAE;IACrE;QACE,KAAK,EAAE,cAAc;QACrB,MAAM,EAAE,mCAAmC;QAC3C,IAAI,EAAE,CAAC,MAAM,EAAE,KAAK,CAAC;KACtB;IACD,EAAE,KAAK,EAAE,QAAQ,EAAE,MAAM,EAAE,qBAAqB,EAAE,IAAI,EAAE,CAAC,QAAQ,CAAC,EAAE;CACrE,CAAA;AAED,MAAM,WAAW,GAAY;IAC3B,KAAK,EAAE,cAAc;IACrB,MAAM,EAAE,yBAAyB;CAClC,CAAA;AAED,MAAM,CAAC,MAAM,aAAa,GAAc;IACtC,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,mBAAmB,EAAE;IAC9C;QACE,KAAK,EAAE,OAAO;QACd,MAAM,EAAE,6CAA6C;KACtD;IACD,EAAE,KAAK,EAAE,cAAc,EAAE,MAAM,EAAE,oBAAoB,EAAE;IACvD,WAAW;IACX;QACE,KAAK,EAAE,oBAAoB;QAC3B,MAAM,EAAE,4CAA4C;KACrD;IACD;QACE,KAAK,EAAE,mBAAmB;QAC1B,MAAM,EAAE,kDAAkD;KAC3D;IACD;QACE,KAAK,EAAE,yBAAyB;QAChC,MAAM,EAAE,uCAAuC;KAChD;IACD,EAAE,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,iCAAiC,EAAE;CACvE,CAAA;AAED,MAAM,CAAC,MAAM,kBAAkB,GAAG;IAChC,WAAW;IACX,GAAG,CAAC,GAAG,gBAAgB,EAAE,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,MAAM,EAAE,CAAC;CAC1E,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA"}

package/dist/components/dialogs/AnnotationFileDialog.js

@@ -1,8 +1,9 @@
 import React, { useState } from 'react';
 import { Dialog, ErrorMessage } from '@jbrowse/core/ui';
-import { Button, DialogActions, DialogContent, FormControl, FormControlLabel, Radio, RadioGroup, TextField, Typography, } from '@mui/material';
+import { Button, DialogActions, DialogContent, FormControl, FormControlLabel, Link, Radio, RadioGroup, TextField, Typography, } from '@mui/material';
 import { observer } from 'mobx-react';
 import { annotationTextToGFF } from 'msa-parsers';
+const domainsTutorial = 'https://gmod.org/JBrowseMSA/tutorials/protein_family';
 async function fetchText(url) {
     const response = await fetch(url);
     if (!response.ok) {
@@ -25,7 +26,10 @@ const AnnotationFileDialog = observer(function ({ handleClose, model, }) {
         }, open: true },
         React.createElement(DialogContent, null,
             error ? React.createElement(ErrorMessage, { error: error }) : null,
-            React.createElement(Typography, null, "Open a GFF3 file of annotations, such as the one `react-msaview-cli interpro` writes, or the JSON an InterProScan run returns."),
+            React.createElement(Typography, null,
+                "Open a GFF3 file of annotations, such as the one `react-msaview-cli interpro` writes, or the JSON an InterProScan run returns.",
+                ' ',
+                React.createElement(Link, { href: domainsTutorial, target: "_blank", rel: "noopener noreferrer" }, "How to make one")),
             React.createElement("div", { style: { display: 'flex', margin: 30 } },
                 React.createElement(FormControl, { component: "fieldset" },
                     React.createElement(RadioGroup, { value: choice, onChange: event => {
@@ -65,6 +69,7 @@ const AnnotationFileDialog = observer(function ({ handleClose, model, }) {
                             model.setGFFFilehandle(undefined);
                             model.setGFF(annotationTextToGFF(text));
                             model.setShowDomains(true);
+                            model.setCellFill('domain');
                             handleClose();
                         }
                         catch (e) {

package/dist/components/dialogs/AnnotationFileDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AnnotationFileDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/AnnotationFileDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,IAAI,EACJ,KAAK,EACL,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,mBAAmB,EAAE,MAAM,aAAa,CAAA;AAIjD,MAAM,eAAe,GAAG,sDAAsD,CAAA;AAE9E,KAAK,UAAU,SAAS,CAAC,GAAW;IAClC,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,CAAC,CAAA;IACjC,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,MAAM,IAAI,KAAK,CACb,QAAQ,QAAQ,CAAC,MAAM,aAAa,GAAG,IAAI,MAAM,QAAQ,CAAC,IAAI,EAAE,EAAE,CACnE,CAAA;IACH,CAAC;IACD,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAA;AACxB,CAAC;AAED,MAAM,oBAAoB,GAAG,QAAQ,CAAC,UAAU,EAC9C,WAAW,EACX,KAAK,GAIN;IACC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,EAAQ,CAAA;IACxC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAA;IAC5C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAClC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAE7C,2EAA2E;IAC3E,4EAA4E;IAC5E,yEAAyE;IACzE,oCAAoC;IACpC,OAAO,CACL,oBAAC,MAAM,IACL,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,sBAAsB,EAC5B,OAAO,EAAE,GAAG,EAAE;YACZ,WAAW,EAAE,CAAA;QACf,CAAC,EACD,IAAI;QAEJ,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU;;gBAEkD,GAAG;gBAC9D,oBAAC,IAAI,IACH,IAAI,EAAE,eAAe,EACrB,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,qBAAqB,sBAGpB,CACI;YAEb,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE;gBACzC,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;oBAC/B,oBAAC,UAAU,IACT,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;wBAC/B,CAAC;wBAED,oBAAC,gBAAgB,IAAC,KAAK,EAAC,KAAK,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,KAAK,GAAG;wBAChE,oBAAC,gBAAgB,IAAC,KAAK,EAAC,MAAM,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,MAAM,GAAG,CACvD,CACD;gBACb,MAAM,KAAK,KAAK,CAAC,CAAC,CAAC,CAClB;oBACE,oBAAC,UAAU,6CAAgD;oBAC3D,oBAAC,SAAS,IACR,KAAK,EAAC,KAAK,EACX,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;wBAC5B,CAAC,GACD,CACE,CACP,CAAC,CAAC,CAAC,CACF,6BAAK,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE;oBAC5B,oBAAC,UAAU,wDAEE;oBACb,oBAAC,MAAM,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAC,OAAO;;wBAE1C,+BACE,IAAI,EAAC,MAAM,EACX,MAAM,QACN,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE;gCACvB,MAAM,MAAM,GAAG,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAA;gCAChC,IAAI,MAAM,EAAE,CAAC;oCACX,OAAO,CAAC,MAAM,CAAC,CAAA;gCACjB,CAAC;4BACH,CAAC,GACD,CACK;oBACR,IAAI,CAAC,CAAC,CAAC,oBAAC,UAAU,QAAE,IAAI,CAAC,IAAI,CAAc,CAAC,CAAC,CAAC,IAAI,CAC/C,CACP,CACG,CACQ;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,OAAO,IAAI,CAAC,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,EAC9D,OAAO,EAAE,GAAG,EAAE;oBACZ,mEAAmE;oBACnE,CAAC;oBAAA,CAAC,KAAK,IAAI,EAAE;wBACX,UAAU,CAAC,IAAI,CAAC,CAAA;wBAChB,QAAQ,CAAC,SAAS,CAAC,CAAA;wBACnB,IAAI,CAAC;4BACH,MAAM,IAAI,GAAG,MAAM,CAAC,MAAM,KAAK,MAAM,IAAI,IAAI;gCAC3C,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE;gCACb,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAA;4BACnB,8DAA8D;4BAC9D,+DAA+D;4BAC/D,6DAA6D;4BAC7D,KAAK,CAAC,gBAAgB,CAAC,SAAS,CAAC,CAAA;4BACjC,KAAK,CAAC,MAAM,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAA;4BACvC,KAAK,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;4BAC1B,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAA;4BAC3B,WAAW,EAAE,CAAA;wBACf,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC;gCAAS,CAAC;4BACT,UAAU,CAAC,KAAK,CAAC,CAAA;wBACnB,CAAC;oBACH,CAAC,CAAC,EAAE,CAAA;gBACN,CAAC,uBAGM;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,oBAAoB,CAAA"}

package/dist/components/dialogs/FeatureDialog.js

@@ -49,8 +49,8 @@ const FeatureTable = observer(function ({ model }) {
                     React.createElement(TableCell, null, "description"))),
             React.createElement(TableBody, null, types.map(({ accession, name, description }) => (React.createElement(TableRow, { key: accession },
                 React.createElement(TableCell, { padding: "checkbox" },
-                    React.createElement(Checkbox, { checked: !model.turnedOffFeatures.get(accession), onChange: () => {
-                            model.setFilter(accession, !!model.turnedOffFeatures.get(accession));
+                    React.createElement(Checkbox, { checked: !model.featureOff(accession), onChange: () => {
+                            model.setFilter(accession, model.featureOff(accession));
                         } })),
                 React.createElement(TableCell, null,
                     React.createElement("div", { style: {

package/dist/components/dialogs/FeatureDialog.js.map

@@ -1 +1 @@
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package/dist/components/{header/MSASettingsMenu.d.ts → dialogs/GapThresholdDialog.d.ts}

@@ -1,6 +1,7 @@
 import React from 'react';
 import type { MsaViewModel } from '../../model.ts';
-declare const MSASettingsMenu: ({ model }: {
+declare const GapThresholdDialog: ({ model, onClose, }: {
     model: MsaViewModel;
+    onClose: () => void;
 }) => React.JSX.Element;
-export default MSASettingsMenu;
+export default GapThresholdDialog;

package/dist/components/dialogs/GapThresholdDialog.js

@@ -0,0 +1,15 @@
+import React from 'react';
+import { Dialog } from '@jbrowse/core/ui';
+import { Button, DialogActions, DialogContent, Typography } from '@mui/material';
+import { observer } from 'mobx-react';
+import GappynessSlider from './GappynessSlider.js';
+const GapThresholdDialog = observer(function ({ model, onClose, }) {
+    return (React.createElement(Dialog, { open: true, onClose: onClose, title: "Hide gappy columns" },
+        React.createElement(DialogContent, null,
+            React.createElement(Typography, { variant: "body2", sx: { mb: 2 } }, "The viewer hides each column where at least this share of the rows has a gap."),
+            React.createElement(GappynessSlider, { model: model })),
+        React.createElement(DialogActions, null,
+            React.createElement(Button, { variant: "contained", onClick: onClose }, "Close"))));
+});
+export default GapThresholdDialog;
+//# sourceMappingURL=GapThresholdDialog.js.map

package/dist/components/dialogs/GapThresholdDialog.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"GapThresholdDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/GapThresholdDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AAInD,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,KAAK,EACL,OAAO,GAIR;IACC,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAC,oBAAoB;QACvD,oBAAC,aAAa;YACZ,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,oFAG5B;YACb,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI,CACnB;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,OAAO,YAEnC,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}

package/dist/components/{header → dialogs}/GappynessSlider.d.ts

@@ -2,5 +2,5 @@ import React from 'react';
 import type { MsaViewModel } from '../../model.ts';
 declare const GappynessSlider: ({ model, }: {
     model: MsaViewModel;
-}) => React.JSX.Element | null;
+}) => React.JSX.Element;
 export default GappynessSlider;

package/dist/components/{header → dialogs}/GappynessSlider.js

@@ -2,15 +2,11 @@ import React, { useState } from 'react';
 import { Slider, Typography } from '@mui/material';
 import { observer } from 'mobx-react';
 const GappynessSlider = observer(function GappynessSlider({ model, }) {
-    const { hideGaps, allowedGappyness } = model;
     const [dragValue, setDragValue] = useState();
-    const value = dragValue ?? allowedGappyness;
-    if (!hideGaps) {
-        return null;
-    }
+    const value = dragValue ?? model.allowedGappyness;
     return (React.createElement("div", { style: { display: 'flex', alignItems: 'center', gap: 8 } },
         React.createElement(Typography, { style: { whiteSpace: 'nowrap' } },
-            "Hide columns w/ \u2265",
+            "\u2265",
             value,
             "% gaps"),
         React.createElement(Slider
@@ -25,10 +21,7 @@ const GappynessSlider = observer(function GappynessSlider({ model, }) {
         // The thumb follows local state while dragging and the model takes the
         // value on release, since each write recomputes the gap columns over
         // the whole alignment.
-        //
-        // The thumb centers on the track's ends, so the margin keeps its
-        // overhang off the label and the row search beside it.
-        , { "data-testid": "gappyness_slider", style: { width: 100, marginInline: 10 }, min: 1, max: 100, value: value, onChange: (_, val) => {
+        , { "data-testid": "gappyness_slider", style: { width: 200, marginInline: 10 }, min: 1, max: 100, value: value, onChange: (_, val) => {
                 setDragValue(val);
             }, onChangeCommitted: (_, val) => {
                 model.setAllowedGappyness(val);

package/dist/components/dialogs/GappynessSlider.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"GappynessSlider.js","sourceRoot":"","sources":["../../../src/components/dialogs/GappynessSlider.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACxD,KAAK,GAGN;IACC,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,EAAU,CAAA;IACpD,MAAM,KAAK,GAAG,SAAS,IAAI,KAAK,CAAC,gBAAgB,CAAA;IACjD,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,GAAG,EAAE,CAAC,EAAE;QAI3D,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE;;YACpC,KAAK;qBACC;QACb,oBAAC,MAAM;QACL,qEAAqE;QACrE,6DAA6D;QAC7D,wEAAwE;QACxE,yCAAyC;QACzC,EAAE;QACF,sEAAsE;QACtE,0DAA0D;QAC1D,EAAE;QACF,uEAAuE;QACvE,qEAAqE;QACrE,uBAAuB;2BACX,kBAAkB,EAC9B,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,YAAY,EAAE,EAAE,EAAE,EACvC,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,YAAY,CAAC,GAAG,CAAC,CAAA;YACnB,CAAC,EACD,iBAAiB,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBAC5B,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;gBAC9B,YAAY,CAAC,SAAS,CAAC,CAAA;YACzB,CAAC,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}

package/dist/components/{header → dialogs}/GoToBox.d.ts

@@ -332,7 +332,9 @@ export declare function labelledInput(params: AutocompleteRenderInputParams): {
         'aria-label': string;
     };
 };
-declare const GoToBox: ({ model }: {
+export declare function canGoTo(model: MsaViewModel): boolean;
+declare const GoToBox: ({ model, onFound, }: {
     model: MsaViewModel;
-}) => React.JSX.Element | null;
+    onFound?: () => void;
+}) => React.JSX.Element;
 export default GoToBox;

package/dist/components/dialogs/GoToBox.js

@@ -0,0 +1,48 @@
+import React, { useState } from 'react';
+import { Autocomplete, TextField } from '@mui/material';
+import { observer } from 'mobx-react';
+import { findableRowNames, goTo, rowNameSuggestions } from './goTo.js';
+const label = 'Go to row or column';
+// MUI 9 hands renderInput `slotProps`; MUI 7, which every released JBrowse host
+// serves, hands it `inputProps` and no `slotProps` at all
+export function labelledInput(params) {
+    const { slotProps, inputProps } = params;
+    return slotProps
+        ? {
+            slotProps: {
+                ...slotProps,
+                htmlInput: { ...slotProps.htmlInput, 'aria-label': label },
+            },
+        }
+        : { inputProps: { ...inputProps, 'aria-label': label } };
+}
+// the menu that opens the dialog hands focus back to its button as it closes,
+// after an autoFocus input would have taken it
+function focusNextFrame(el) {
+    if (el) {
+        requestAnimationFrame(() => {
+            el.focus();
+        });
+    }
+}
+export function canGoTo(model) {
+    return findableRowNames(model).length > 1 || model.numColumns > 0;
+}
+const GoToBox = observer(function ({ model, onFound, }) {
+    const [missed, setMissed] = useState(false);
+    return (React.createElement(Autocomplete, { freeSolo: true, options: findableRowNames(model), filterOptions: (options, { inputValue }) => rowNameSuggestions(options, inputValue), value: null, blurOnSelect: true, onInputChange: () => {
+            setMissed(false);
+        }, onChange: (_, text) => {
+            if (text) {
+                const found = goTo(model, text);
+                setMissed(!found);
+                if (found) {
+                    onFound?.();
+                }
+            }
+        }, renderInput: params => (React.createElement(TextField, { ...params, inputRef: focusNextFrame, error: missed, placeholder: "Row name or column number", helperText: missed
+                ? 'No row or column matches'
+                : 'Or name:N for residue N of that row', ...labelledInput(params) })) }));
+});
+export default GoToBox;
+//# sourceMappingURL=GoToBox.js.map

package/dist/components/dialogs/GoToBox.js.map

@@ -0,0 +1 @@
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package/dist/components/dialogs/GoToDialog.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+import type { MsaViewModel } from '../../model.ts';
+export default function GoToDialog({ model, onClose, }: {
+    model: MsaViewModel;
+    onClose: () => void;
+}): React.JSX.Element;

package/dist/components/dialogs/GoToDialog.js

@@ -0,0 +1,10 @@
+import React from 'react';
+import { Dialog } from '@jbrowse/core/ui';
+import { DialogContent } from '@mui/material';
+import GoToBox from './GoToBox.js';
+export default function GoToDialog({ model, onClose, }) {
+    return (React.createElement(Dialog, { open: true, onClose: onClose, title: "Go to row or column", maxWidth: "xs", fullWidth: true },
+        React.createElement(DialogContent, null,
+            React.createElement(GoToBox, { model: model, onFound: onClose }))));
+}
+//# sourceMappingURL=GoToDialog.js.map

package/dist/components/dialogs/GoToDialog.js.map

@@ -0,0 +1 @@
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package/dist/components/dialogs/MetadataDialog.js

@@ -2,15 +2,23 @@ import React from 'react';
 import { Dialog } from '@jbrowse/core/ui';
 import { DialogContent, Typography } from '@mui/material';
 import { observer } from 'mobx-react';
-import MetadataTable, { isEmpty } from '../MetadataTable.js';
+import MetadataTable, { isEmpty, isRecord } from '../MetadataTable.js';
 import SequenceTextArea from '../SequenceTextArea.js';
+import { gfLabels, monospaceKeys, sectionLabels } from './metadataLabels.js';
+import { groupGeneral } from './metadataRecord.js';
 const MetadataDialog = observer(function ({ model, onClose, }) {
-    const { header } = model;
+    const entries = Object.entries(model.header).filter(([, value]) => value != null && !isEmpty(value));
+    const fields = Object.fromEntries(entries.filter(([, value]) => !isRecord(value)));
+    const sections = entries.filter(([, value]) => isRecord(value));
     return (React.createElement(Dialog, { onClose: () => {
             onClose();
         }, open: true, title: "Metadata", maxWidth: "xl" },
         React.createElement(DialogContent, null,
-            Object.values(header).every(isEmpty) ? (React.createElement(Typography, null, "This alignment has no metadata.")) : (React.createElement(MetadataTable, { record: header })),
+            entries.length === 0 ? (React.createElement(Typography, null, "This alignment has no metadata.")) : (React.createElement(React.Fragment, null,
+                Object.keys(fields).length > 0 ? (React.createElement(MetadataTable, { record: fields })) : null,
+                sections.map(([section, value]) => (React.createElement("div", { key: section },
+                    React.createElement(Typography, { variant: "h6" }, sectionLabels[section] ?? section),
+                    section === 'General' ? (React.createElement(MetadataTable, { record: groupGeneral(value), labels: gfLabels, monospaceKeys: monospaceKeys })) : (React.createElement(MetadataTable, { record: value }))))))),
             React.createElement(Typography, { variant: "h6" }, "Sequences"),
             React.createElement(SequenceTextArea, { str: model.rows }))));
 });

package/dist/components/dialogs/MetadataDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MetadataDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/MetadataDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,aAAa,EAAE,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAsB,CAAA;AACvE,OAAO,gBAAgB,MAAM,wBAAyB,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAA;AAC5E,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAsB,CAAA;AAInD,MAAM,cAAc,GAAG,QAAQ,CAAC,UAAU,EACxC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,MAAM,CACjD,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,IAAI,IAAI,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,CAChD,CAAA;IACD,MAAM,MAAM,GAAG,MAAM,CAAC,WAAW,CAC/B,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAChD,CAAA;IACD,MAAM,QAAQ,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;IAC/D,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,UAAU,EAChB,QAAQ,EAAC,IAAI;QAEb,oBAAC,aAAa;YACX,OAAO,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CACtB,oBAAC,UAAU,0CAA6C,CACzD,CAAC,CAAC,CAAC,CACF;gBACG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAChC,oBAAC,aAAa,IAAC,MAAM,EAAE,MAAM,GAAI,CAClC,CAAC,CAAC,CAAC,IAAI;gBACP,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,OAAO,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAClC,6BAAK,GAAG,EAAE,OAAO;oBACf,oBAAC,UAAU,IAAC,OAAO,EAAC,IAAI,IACrB,aAAa,CAAC,OAAO,CAAC,IAAI,OAAO,CACvB;oBACZ,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,CACvB,oBAAC,aAAa,IACZ,MAAM,EAAE,YAAY,CAAC,KAAK,CAAC,EAC3B,MAAM,EAAE,QAAQ,EAChB,aAAa,EAAE,aAAa,GAC5B,CACH,CAAC,CAAC,CAAC,CACF,oBAAC,aAAa,IAAC,MAAM,EAAE,KAAgC,GAAI,CAC5D,CACG,CACP,CAAC,CACD,CACJ;YACD,oBAAC,UAAU,IAAC,OAAO,EAAC,IAAI,gBAAuB;YAC/C,oBAAC,gBAAgB,IAAC,GAAG,EAAE,KAAK,CAAC,IAAI,GAAI,CACvB,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}

package/dist/components/dialogs/goTo.d.ts

@@ -0,0 +1,5 @@
+import type { MsaViewModel } from '../../model.ts';
+export declare function findableRowNames(model: MsaViewModel): string[];
+export declare function rowNameSuggestions(names: string[], input: string, limit?: number): string[];
+/** centers the view on the entry's target and lights it; false if none */
+export declare function goTo(model: MsaViewModel, text: string): boolean;

package/dist/components/{header → dialogs}/goTo.js

@@ -17,7 +17,7 @@ export function rowNameSuggestions(names, input, limit = 50) {
  * column the ruler numbers N, or residue N of a row written `name:N`. A name
  * is tried whole first, so a row called `chr1:100` stays reachable.
  */
-export function resolveGoTo(model, text) {
+function resolveGoTo(model, text) {
     const query = text.trim();
     const row = model.rowNamesSet.get(query);
     if (row !== undefined) {

package/dist/components/dialogs/goTo.js.map

@@ -0,0 +1 @@
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package/dist/components/dialogs/metadataLabels.d.ts

@@ -0,0 +1,4 @@
+export declare const sectionLabels: Record<string, string>;
+export declare const gfLabels: Record<string, string>;
+export declare const referenceFieldLabels: Record<string, string>;
+export declare const monospaceKeys: Set<string>;

package/dist/components/dialogs/metadataLabels.js

@@ -0,0 +1,52 @@
+export const sectionLabels = {
+    General: 'Alignment',
+    Accessions: 'Row accessions',
+    Dbxref: 'Row cross-references',
+};
+export const gfLabels = {
+    ID: 'Identifier',
+    AC: 'Accession',
+    DE: 'Description',
+    AU: 'Authors',
+    SE: 'Source of seed',
+    SS: 'Source of structure',
+    BM: 'Build method',
+    SM: 'Search method',
+    GA: 'Gathering threshold',
+    TC: 'Trusted cutoff',
+    NC: 'Noise cutoff',
+    TP: 'Family type',
+    CL: 'Clan',
+    MB: 'Clan members',
+    PI: 'Previous identifiers',
+    DR: 'Database references',
+    CC: 'Comment',
+    WK: 'Wikipedia',
+    NE: 'Pfam family nested in this one',
+    NL: 'Nesting location',
+    NH: 'Tree (Newick)',
+    SQ: 'Number of sequences',
+    RC: 'Reference comment',
+    RN: 'Reference number',
+    RM: 'PubMed ID',
+    RT: 'Reference title',
+    RA: 'Reference authors',
+    RL: 'Reference journal',
+    CB: 'Curation: build',
+    DC: 'Database comment',
+    DW: 'Database web link',
+    OS: 'Organism',
+    OC: 'Organism classification',
+    AM: 'Alignment method',
+    FT: 'Feature',
+    SO: 'Sequence Ontology term',
+};
+export const referenceFieldLabels = {
+    RT: 'Title',
+    RA: 'Authors',
+    RL: 'Journal',
+    RM: 'PubMed',
+    RC: 'Comment',
+};
+export const monospaceKeys = new Set(['NH']);
+//# sourceMappingURL=metadataLabels.js.map

package/dist/components/dialogs/metadataLabels.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"metadataLabels.js","sourceRoot":"","sources":["../../../src/components/dialogs/metadataLabels.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,aAAa,GAA2B;IACnD,OAAO,EAAE,WAAW;IACpB,UAAU,EAAE,gBAAgB;IAC5B,MAAM,EAAE,sBAAsB;CAC/B,CAAA;AAED,MAAM,CAAC,MAAM,QAAQ,GAA2B;IAC9C,EAAE,EAAE,YAAY;IAChB,EAAE,EAAE,WAAW;IACf,EAAE,EAAE,aAAa;IACjB,EAAE,EAAE,SAAS;IACb,EAAE,EAAE,gBAAgB;IACpB,EAAE,EAAE,qBAAqB;IACzB,EAAE,EAAE,cAAc;IAClB,EAAE,EAAE,eAAe;IACnB,EAAE,EAAE,qBAAqB;IACzB,EAAE,EAAE,gBAAgB;IACpB,EAAE,EAAE,cAAc;IAClB,EAAE,EAAE,aAAa;IACjB,EAAE,EAAE,MAAM;IACV,EAAE,EAAE,cAAc;IAClB,EAAE,EAAE,sBAAsB;IAC1B,EAAE,EAAE,qBAAqB;IACzB,EAAE,EAAE,SAAS;IACb,EAAE,EAAE,WAAW;IACf,EAAE,EAAE,gCAAgC;IACpC,EAAE,EAAE,kBAAkB;IACtB,EAAE,EAAE,eAAe;IACnB,EAAE,EAAE,qBAAqB;IACzB,EAAE,EAAE,mBAAmB;IACvB,EAAE,EAAE,kBAAkB;IACtB,EAAE,EAAE,WAAW;IACf,EAAE,EAAE,iBAAiB;IACrB,EAAE,EAAE,mBAAmB;IACvB,EAAE,EAAE,mBAAmB;IACvB,EAAE,EAAE,iBAAiB;IACrB,EAAE,EAAE,kBAAkB;IACtB,EAAE,EAAE,mBAAmB;IACvB,EAAE,EAAE,UAAU;IACd,EAAE,EAAE,yBAAyB;IAC7B,EAAE,EAAE,kBAAkB;IACtB,EAAE,EAAE,SAAS;IACb,EAAE,EAAE,wBAAwB;CAC7B,CAAA;AAED,MAAM,CAAC,MAAM,oBAAoB,GAA2B;IAC1D,EAAE,EAAE,OAAO;IACX,EAAE,EAAE,SAAS;IACb,EAAE,EAAE,SAAS;IACb,EAAE,EAAE,QAAQ;IACZ,EAAE,EAAE,SAAS;CACd,CAAA;AAED,MAAM,CAAC,MAAM,aAAa,GAAG,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,CAAA"}

package/dist/components/dialogs/metadataRecord.d.ts

@@ -0,0 +1 @@
+export declare function groupGeneral(general: unknown): Record<string, unknown>;

package/dist/components/dialogs/metadataRecord.js

@@ -0,0 +1,38 @@
+import React from 'react';
+import { referenceFieldLabels } from './metadataLabels.js';
+const referenceTags = ['RM', 'RT', 'RA', 'RL', 'RC'];
+function pubmed(id) {
+    return /^\d+$/.test(id) ? (React.createElement("a", { href: `https://pubmed.ncbi.nlm.nih.gov/${id}/`, target: "_blank", rel: "noreferrer" }, id)) : (id);
+}
+function groupReferences(general) {
+    const numbers = general.RN;
+    if (!Array.isArray(numbers) || numbers.length === 0) {
+        return general;
+    }
+    const present = referenceTags.filter(tag => general[tag] != null);
+    const aligned = present.every(tag => {
+        const values = general[tag];
+        return Array.isArray(values) && values.length === numbers.length;
+    });
+    if (!aligned) {
+        return general;
+    }
+    const rest = Object.fromEntries(Object.entries(general).filter(([tag]) => tag !== 'RN' && !referenceTags.includes(tag)));
+    const references = Object.fromEntries(numbers.map((number, i) => [
+        number,
+        Object.fromEntries(present.map(tag => {
+            const value = general[tag][i];
+            return [
+                referenceFieldLabels[tag],
+                tag === 'RM' ? pubmed(value) : value,
+            ];
+        })),
+    ]));
+    return { ...rest, References: references };
+}
+export function groupGeneral(general) {
+    return general && typeof general === 'object'
+        ? groupReferences(general)
+        : {};
+}
+//# sourceMappingURL=metadataRecord.js.map