react-msaview 8.2.0 → 8.4.0

package/dist/model/msaModel.js

@@ -18,6 +18,12 @@ export function MSAModelF() {
          * default color scheme name
          */
         colorSchemeName: stripDefault(types.string, defaultColorSchemeName),
+        /**
+         * #property
+         * a color per residue letter, which replaces the `colorSchemeName` table
+         * while set. A letter the map leaves out takes no color
+         */
+        customColorScheme: types.frozen(),
         /**
          * #property
          * show a tooltip with the hovered column's value for a track while
@@ -35,10 +41,20 @@ export function MSAModelF() {
         .actions(self => ({
         /**
          * #action
-         * set color scheme name
+         * pick a scheme from the built-in table, which clears
+         * `customColorScheme`
          */
         setColorSchemeName(name) {
             self.colorSchemeName = name;
+            self.customColorScheme = undefined;
+        },
+        /**
+         * #action
+         * color residues from a map of letter to color, or pass undefined to
+         * return to `colorSchemeName`
+         */
+        setCustomColorScheme(map) {
+            self.customColorScheme = map;
         },
         /**
          * #action

package/dist/model/msaModel.js.map

@@ -1 +1 @@
-{"version":3,"file":"msaModel.js","sourceRoot":"","sources":["../../src/model/msaModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhD,OAAO,EACL,cAAc,EACd,sBAAsB,EACtB,sBAAsB,GACvB,MAAM,iBAAiB,CAAA;AACxB,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAA;AAIjD,MAAM,UAAU,GAAgB,CAAC,WAAW,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,SAAS,CAAC,CAAA;AAE/E;;GAEG;AACH,MAAM,UAAU,SAAS;IACvB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;;WAGG;QACH,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,OAAO,EAAE,cAAc,CAAC;QAEpD;;;WAGG;QACH,eAAe,EAAE,YAAY,CAAC,KAAK,CAAC,MAAM,EAAE,sBAAsB,CAAC;QAEnE;;;;;WAKG;QACH,eAAe,EAAE,YAAY,CAAC,KAAK,CAAC,OAAO,EAAE,sBAAsB,CAAC;QAEpE;;;;WAIG;QACH,SAAS,EAAE,KAAK,CAAC,KAAK,CACpB,KAAK,CAAC,WAAW,CAAY,WAAW,EAAE,UAAU,CAAC,CACtD;KACF,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;;WAGG;QACH,kBAAkB,CAAC,IAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,IAAI,CAAA;QAC7B,CAAC;QAED;;WAEG;QACH,UAAU,CAAC,GAAY;YACrB,IAAI,CAAC,OAAO,GAAG,GAAG,CAAA;QACpB,CAAC;QAED;;WAEG;QACH,kBAAkB,CAAC,GAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,GAAG,CAAA;QAC5B,CAAC;QAED;;;WAGG;QACH,YAAY,CAAC,GAAe;YAC1B,IAAI,CAAC,SAAS,GAAG,GAAG,CAAA;QACtB,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
+{"version":3,"file":"msaModel.js","sourceRoot":"","sources":["../../src/model/msaModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhD,OAAO,EACL,cAAc,EACd,sBAAsB,EACtB,sBAAsB,GACvB,MAAM,iBAAiB,CAAA;AACxB,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAA;AAIjD,MAAM,UAAU,GAAgB,CAAC,WAAW,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,SAAS,CAAC,CAAA;AAE/E;;GAEG;AACH,MAAM,UAAU,SAAS;IACvB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;;WAGG;QACH,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,OAAO,EAAE,cAAc,CAAC;QAEpD;;;WAGG;QACH,eAAe,EAAE,YAAY,CAAC,KAAK,CAAC,MAAM,EAAE,sBAAsB,CAAC;QAEnE;;;;WAIG;QACH,iBAAiB,EAAE,KAAK,CAAC,MAAM,EAAsC;QAErE;;;;;WAKG;QACH,eAAe,EAAE,YAAY,CAAC,KAAK,CAAC,OAAO,EAAE,sBAAsB,CAAC;QAEpE;;;;WAIG;QACH,SAAS,EAAE,KAAK,CAAC,KAAK,CACpB,KAAK,CAAC,WAAW,CAAY,WAAW,EAAE,UAAU,CAAC,CACtD;KACF,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;;;WAIG;QACH,kBAAkB,CAAC,IAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,IAAI,CAAA;YAC3B,IAAI,CAAC,iBAAiB,GAAG,SAAS,CAAA;QACpC,CAAC;QAED;;;;WAIG;QACH,oBAAoB,CAAC,GAA4B;YAC/C,IAAI,CAAC,iBAAiB,GAAG,GAAG,CAAA;QAC9B,CAAC;QAED;;WAEG;QACH,UAAU,CAAC,GAAY;YACrB,IAAI,CAAC,OAAO,GAAG,GAAG,CAAA;QACpB,CAAC;QAED;;WAEG;QACH,kBAAkB,CAAC,GAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,GAAG,CAAA;QAC5B,CAAC;QAED;;;WAGG;QACH,YAAY,CAAC,GAAe;YAC1B,IAAI,CAAC,SAAS,GAAG,GAAG,CAAA;QACtB,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}

package/dist/model/treeModel.d.ts

@@ -1,3 +1,4 @@
+import type { TreeOrder } from '../types.ts';
 /**
  * #stateModel Tree
  */
@@ -29,6 +30,13 @@ export declare function TreeModelF(): import("@jbrowse/mobx-state-tree").IModelT
      * account evolutionary distances
      */
     showBranchLen: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+    /**
+     * #property
+     * the order each node's children draw in: `branchLength` (shortest
+     * first), `input` (as the file gives them), `ladderize` (fewest tips
+     * first) or `ladderizeReverse` (most tips first)
+     */
+    treeOrder: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<TreeOrder>, [undefined]>;
     /**
      * #property
      * draw tree, boolean
@@ -90,6 +98,10 @@ export declare function TreeModelF(): import("@jbrowse/mobx-state-tree").IModelT
      * #action
      */
     setShowBranchLen(arg: boolean): void;
+    /**
+     * #action
+     */
+    setTreeOrder(order: TreeOrder): void;
     /**
      * #action
      */

package/dist/model/treeModel.js

@@ -1,5 +1,5 @@
 import { types } from '@jbrowse/mobx-state-tree';
-import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawNodeLabels, defaultDrawTree, defaultLabelsAlignRight, defaultOverviewHeight, defaultShowBranchLen, defaultShowTreeOverview, defaultTreeAreaWidth, defaultTreeWidth, } from '../constants.js';
+import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawNodeLabels, defaultDrawTree, defaultLabelsAlignRight, defaultOverviewHeight, defaultShowBranchLen, defaultTreeOrder, defaultShowTreeOverview, defaultTreeAreaWidth, defaultTreeWidth, treeOrders, } from '../constants.js';
 import { stripDefault } from '../stripDefault.js';
 /**
  * #stateModel Tree
@@ -34,6 +34,13 @@ export function TreeModelF() {
          * account evolutionary distances
          */
         showBranchLen: stripDefault(types.boolean, defaultShowBranchLen),
+        /**
+         * #property
+         * the order each node's children draw in: `branchLength` (shortest
+         * first), `input` (as the file gives them), `ladderize` (fewest tips
+         * first) or `ladderizeReverse` (most tips first)
+         */
+        treeOrder: stripDefault(types.enumeration('TreeOrder', [...treeOrders]), defaultTreeOrder),
         /**
          * #property
          * draw tree, boolean
@@ -108,6 +115,12 @@ export function TreeModelF() {
         setShowBranchLen(arg) {
             self.showBranchLen = arg;
         },
+        /**
+         * #action
+         */
+        setTreeOrder(order) {
+            self.treeOrder = order;
+        },
         /**
          * #action
          */

package/dist/model/treeModel.js.map

@@ -1 +1 @@
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