react-msaview 8.2.0 → 8.3.0

package/dist/components/dialogs/ExportSVGDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"ExportSVGDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/ExportSVGDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,EACL,KAAK,EACL,MAAM,EACN,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,KAAK,EACL,UAAU,EACV,UAAU,EACV,QAAQ,GACT,MAAM,eAAe,CAAA;AAEtB,OAAO,SAAS,MAAM,iBAAkB,CAAA;AAIxC,4EAA4E;AAC5E,gFAAgF;AAChF,+EAA+E;AAC/E,gBAAgB;AAChB,SAAS,UAAU,CAAC,EAAc;IAChC,qBAAqB,CAAC,GAAG,EAAE;QACzB,qBAAqB,CAAC,EAAE,CAAC,CAAA;IAC3B,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,eAAe,CAAC,EACtC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC1D,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAC1C,UAAU,CACX,CAAA;IACD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACjD,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,EACJ,UAAU,EACV,WAAW,EACX,aAAa,EACb,cAAc,EACd,cAAc,EACd,oBAAoB,EACpB,UAAU,EACV,MAAM,EACN,cAAc,EACd,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,SAAS,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAA;IAC3C,MAAM,WAAW,GAAG,UAAU,GAAG,aAAa,GAAG,cAAc,CAAA;IAC/D,MAAM,YAAY,GAChB,WAAW;QACX,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1C,kBAAkB,CAAA;IACpB,2EAA2E;IAC3E,4EAA4E;IAC5E,4EAA4E;IAC5E,4BAA4B;IAC5B,MAAM,MAAM,GACV,cAAc,IAAI,UAAU,KAAK,QAAQ,CAAC,CAAC,CAAC,UAAU,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAA;IAC5E,MAAM,aAAa,GAAG,MAAM,GAAG,OAAO,CAAA;IACtC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,YAAY;QAElB,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,oBAAuB;YAClC,oBAAC,SAAS,IACR,KAAK,EAAC,kBAAkB,EACxB,QAAQ,EAAE,UAAU,KAAK,QAAQ,EACjC,OAAO,EAAE,cAAc,EACvB,QAAQ,EAAE,GAAG,EAAE;oBACb,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;gBACpC,CAAC,GACD;YACD,SAAS,CAAC,CAAC,CAAC,CACX,oBAAC,SAAS,IACR,KAAK,EAAC,iBAAiB,EACvB,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,GAAG,EAAE;oBACb,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;gBAClC,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI;YACR;gBACE,oBAAC,WAAW;oBACV,oBAAC,SAAS,sBAAwB;oBAClC,oBAAC,UAAU,IACT,KAAK,EAAE,UAAU,EACjB,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,MAAM,CAAA;4BAC9B,IAAI,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,UAAU,EAAE,CAAC;gCAC/C,aAAa,CAAC,KAAK,CAAC,CAAA;4BACtB,CAAC;wBACH,CAAC;wBAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,QAAQ,EACd,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB;wBACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,UAAU,EAChB,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,uBAAuB,GAC7B,CACS,CACD,CACV;YACL,aAAa,CAAC,CAAC,CAAC,CACf,oBAAC,KAAK,IAAC,QAAQ,EAAC,SAAS,EAAC,KAAK,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE;;gBAC5B,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC;;gBACzC,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC;;gBAAmB,GAAG;gBAC9C,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC;4LAGpB,CACT,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS;gBACf,oEAAoE;gBACpE,qEAAqE;gBACrE,wCAAwC;gBACxC,QAAQ,EAAE,SAAS,EACnB,SAAS,EACP,SAAS,CAAC,CAAC,CAAC,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,KAAK,EAAC,SAAS,GAAG,CAAC,CAAC,CAAC,IAAI,EAEnE,OAAO,EAAE,GAAG,EAAE;oBACZ,YAAY,CAAC,IAAI,CAAC,CAAA;oBAClB,UAAU,CAAC,GAAG,EAAE;wBACd,KAAK,KAAK;6BACP,SAAS,CAAC;4BACT,KAAK;4BACL,cAAc;4BACd,aAAa,EAAE,SAAS,IAAI,aAAa;4BACzC,UAAU;yBACX,CAAC;6BACD,IAAI,CAAC,GAAG,EAAE;4BACT,OAAO,EAAE,CAAA;wBACX,CAAC,CAAC;6BACD,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;4BACpB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC,CAAC;6BACD,OAAO,CAAC,GAAG,EAAE;4BACZ,YAAY,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC,CAAC,CAAA;oBACN,CAAC,CAAC,CAAA;gBACJ,CAAC,IAEA,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,QAAQ,CAC7B;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,OAAO,EAAE,CAAA;gBACX,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}
+{"version":3,"file":"ExportSVGDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/ExportSVGDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,EACL,KAAK,EACL,MAAM,EACN,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,KAAK,EACL,UAAU,EACV,UAAU,EACV,QAAQ,GACT,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,SAAS,MAAM,iBAAkB,CAAA;AAIxC,4EAA4E;AAC5E,gFAAgF;AAChF,+EAA+E;AAC/E,gBAAgB;AAChB,SAAS,UAAU,CAAC,EAAc;IAChC,qBAAqB,CAAC,GAAG,EAAE;QACzB,qBAAqB,CAAC,EAAE,CAAC,CAAA;IAC3B,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC1D,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAC1C,UAAU,CACX,CAAA;IACD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACjD,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,EACJ,UAAU,EACV,WAAW,EACX,aAAa,EACb,cAAc,EACd,cAAc,EACd,oBAAoB,EACpB,UAAU,EACV,MAAM,EACN,cAAc,EACd,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,SAAS,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAA;IAC3C,MAAM,WAAW,GAAG,UAAU,GAAG,aAAa,GAAG,cAAc,CAAA;IAC/D,MAAM,YAAY,GAChB,WAAW;QACX,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1C,kBAAkB,CAAA;IACpB,2EAA2E;IAC3E,4EAA4E;IAC5E,4EAA4E;IAC5E,4BAA4B;IAC5B,MAAM,MAAM,GACV,cAAc,IAAI,UAAU,KAAK,QAAQ,CAAC,CAAC,CAAC,UAAU,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAA;IAC5E,MAAM,aAAa,GAAG,MAAM,GAAG,OAAO,CAAA;IACtC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,YAAY;QAElB,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,oBAAuB;YAClC,oBAAC,SAAS,IACR,KAAK,EAAC,kBAAkB,EACxB,QAAQ,EAAE,UAAU,KAAK,QAAQ,EACjC,OAAO,EAAE,cAAc,EACvB,QAAQ,EAAE,GAAG,EAAE;oBACb,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;gBACpC,CAAC,GACD;YACD,SAAS,CAAC,CAAC,CAAC,CACX,oBAAC,SAAS,IACR,KAAK,EAAC,iBAAiB,EACvB,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,GAAG,EAAE;oBACb,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;gBAClC,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI;YACR;gBACE,oBAAC,WAAW;oBACV,oBAAC,SAAS,sBAAwB;oBAClC,oBAAC,UAAU,IACT,KAAK,EAAE,UAAU,EACjB,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,MAAM,CAAA;4BAC9B,IAAI,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,UAAU,EAAE,CAAC;gCAC/C,aAAa,CAAC,KAAK,CAAC,CAAA;4BACtB,CAAC;wBACH,CAAC;wBAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,QAAQ,EACd,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB;wBACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,UAAU,EAChB,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,uBAAuB,GAC7B,CACS,CACD,CACV;YACL,aAAa,CAAC,CAAC,CAAC,CACf,oBAAC,KAAK,IAAC,QAAQ,EAAC,SAAS,EAAC,KAAK,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE;;gBAC5B,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC;;gBACzC,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC;;gBAAmB,GAAG;gBAC9C,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC;4LAGpB,CACT,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS;gBACf,oEAAoE;gBACpE,qEAAqE;gBACrE,wCAAwC;gBACxC,QAAQ,EAAE,SAAS,EACnB,SAAS,EACP,SAAS,CAAC,CAAC,CAAC,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,KAAK,EAAC,SAAS,GAAG,CAAC,CAAC,CAAC,IAAI,EAEnE,OAAO,EAAE,GAAG,EAAE;oBACZ,YAAY,CAAC,IAAI,CAAC,CAAA;oBAClB,UAAU,CAAC,GAAG,EAAE;wBACd,KAAK,KAAK;6BACP,SAAS,CAAC;4BACT,KAAK;4BACL,cAAc;4BACd,aAAa,EAAE,SAAS,IAAI,aAAa;4BACzC,UAAU;yBACX,CAAC;6BACD,IAAI,CAAC,GAAG,EAAE;4BACT,OAAO,EAAE,CAAA;wBACX,CAAC,CAAC;6BACD,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;4BACpB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC,CAAC;6BACD,OAAO,CAAC,GAAG,EAAE;4BACZ,YAAY,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC,CAAC,CAAA;oBACN,CAAC,CAAC,CAAA;gBACJ,CAAC,IAEA,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,QAAQ,CAC7B;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,OAAO,EAAE,CAAA;gBACX,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}

package/dist/components/dialogs/FeatureDialog.js

@@ -1,14 +1,13 @@
-import React from 'react';
+import React, { useState } from 'react';
 import { Dialog } from '@jbrowse/core/ui';
-import { Button, Checkbox, DialogContent, Table, TableBody, TableCell, TableHead, TableRow, } from '@mui/material';
+import { Button, Checkbox, DialogContent, Table, TableBody, TableCell, TableHead, TableRow, TextField, } from '@mui/material';
 import { observer } from 'mobx-react';
-const Toggles = observer(function ({ model }) {
-    // the accessions the file has, not the ones the filter map happens to hold:
-    // that map now carries only what the reader turned off, and before that it
-    // accumulated every accession of every file opened in this view
-    const { annotationTypes } = model;
+function matches(type, query) {
+    return [type.accession, type.name, type.description].some(field => field?.toLowerCase().includes(query));
+}
+const Toggles = observer(function ({ model, accessions, }) {
     const setAll = (shown) => {
-        for (const accession of annotationTypes.keys()) {
+        for (const accession of accessions) {
             model.setFilter(accession, shown);
         }
     };
@@ -22,6 +21,9 @@ const Toggles = observer(function ({ model }) {
 });
 const FeatureTable = observer(function ({ model }) {
     const { annotationTypes, annotations, featureColors, fillPalette } = model;
+    const [query, setQuery] = useState('');
+    const needle = query.trim().toLowerCase();
+    const types = [...annotationTypes.values()].filter(type => !needle || matches(type, needle));
     const counts = new Map();
     const swatches = new Map();
     for (const annot of annotations) {
@@ -32,7 +34,10 @@ const FeatureTable = observer(function ({ model }) {
         }
     }
     return (React.createElement(React.Fragment, null,
-        React.createElement(Toggles, { model: model }),
+        React.createElement(TextField, { label: "Filter", size: "small", value: query, onChange: event => {
+                setQuery(event.target.value);
+            } }),
+        React.createElement(Toggles, { model: model, accessions: types.map(t => t.accession) }),
         React.createElement(Table, { size: "small" },
             React.createElement(TableHead, null,
                 React.createElement(TableRow, null,
@@ -42,7 +47,7 @@ const FeatureTable = observer(function ({ model }) {
                     React.createElement(TableCell, null, "name"),
                     React.createElement(TableCell, null, "count"),
                     React.createElement(TableCell, null, "description"))),
-            React.createElement(TableBody, null, [...annotationTypes.values()].map(({ accession, name, description }) => (React.createElement(TableRow, { key: accession },
+            React.createElement(TableBody, null, types.map(({ accession, name, description }) => (React.createElement(TableRow, { key: accession },
                 React.createElement(TableCell, { padding: "checkbox" },
                     React.createElement(Checkbox, { checked: !model.turnedOffFeatures.get(accession), onChange: () => {
                             model.setFilter(accession, !!model.turnedOffFeatures.get(accession));

package/dist/components/dialogs/FeatureDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"FeatureDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/FeatureDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,aAAa,EACb,KAAK,EACL,SAAS,EACT,SAAS,EACT,SAAS,EACT,QAAQ,GACT,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACnE,4EAA4E;IAC5E,2EAA2E;IAC3E,gEAAgE;IAChE,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,MAAM,MAAM,GAAG,CAAC,KAAc,EAAE,EAAE;QAChC,KAAK,MAAM,SAAS,IAAI,eAAe,CAAC,IAAI,EAAE,EAAE,CAAC;YAC/C,KAAK,CAAC,SAAS,CAAC,SAAS,EAAE,KAAK,CAAC,CAAA;QACnC,CAAC;IACH,CAAC,CAAA;IACD,OAAO,CACL;QACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,IAAI,CAAC,CAAA;YACd,CAAC,oBAGM;QAET,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,KAAK,CAAC,CAAA;YACf,CAAC,qBAGM,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACxE,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,aAAa,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC1E,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAA;IACxC,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAkB,CAAA;IAC1C,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;QAChC,MAAM,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;QAC3B,MAAM,CAAC,GAAG,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;QACvD,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC;YAC7B,QAAQ,CAAC,GAAG,CACV,SAAS,EACT,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,IAAI,IAAI,WAAW,CAAC,SAAS,CAAE,CAC1D,CAAA;QACH,CAAC;IACH,CAAC;IACD,OAAO,CACL;QACE,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,GAAI;QACzB,oBAAC,KAAK,IAAC,IAAI,EAAC,OAAO;YACjB,oBAAC,SAAS;gBACR,oBAAC,QAAQ;oBACP,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU,GAAG;oBAChC,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,oBAAsB;oBAChC,oBAAC,SAAS,eAAiB;oBAC3B,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,sBAAwB,CACzB,CACD;YACZ,oBAAC,SAAS,QACP,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAChC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC,CACpC,oBAAC,QAAQ,IAAC,GAAG,EAAE,SAAS;gBACtB,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU;oBAC3B,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,EAChD,QAAQ,EAAE,GAAG,EAAE;4BACb,KAAK,CAAC,SAAS,CACb,SAAS,EACT,CAAC,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,CACzC,CAAA;wBACH,CAAC,GACD,CACQ;gBACZ,oBAAC,SAAS;oBACR,6BACE,KAAK,EAAE;4BACL,KAAK,EAAE,EAAE;4BACT,MAAM,EAAE,EAAE;4BACV,UAAU,EAAE,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC;yBACpC,GACD,CACQ;gBACZ,oBAAC,SAAS,QAAE,SAAS,CAAa;gBAClC,oBAAC,SAAS,QAAE,IAAI,CAAa;gBAC7B,oBAAC,SAAS,QAAE,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAa;gBAC9C,oBAAC,SAAS,QAAE,WAAW,CAAa,CAC3B,CACZ,CACF,CACS,CACN,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,OAAO,EACP,KAAK,GAIN;IACC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,iBAAiB,EACvB,QAAQ,EAAC,IAAI;QAEb,oBAAC,aAAa;YACZ,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAChB,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}
+{"version":3,"file":"FeatureDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/FeatureDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,aAAa,EACb,KAAK,EACL,SAAS,EACT,SAAS,EACT,SAAS,EACT,QAAQ,EACR,SAAS,GACV,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAKrC,SAAS,OAAO,CAAC,IAAgB,EAAE,KAAa;IAC9C,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAChE,KAAK,EAAE,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CACrC,CAAA;AACH,CAAC;AAED,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,EACjC,KAAK,EACL,UAAU,GAIX;IACC,MAAM,MAAM,GAAG,CAAC,KAAc,EAAE,EAAE;QAChC,KAAK,MAAM,SAAS,IAAI,UAAU,EAAE,CAAC;YACnC,KAAK,CAAC,SAAS,CAAC,SAAS,EAAE,KAAK,CAAC,CAAA;QACnC,CAAC;IACH,CAAC,CAAA;IACD,OAAO,CACL;QACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,IAAI,CAAC,CAAA;YACd,CAAC,oBAGM;QAET,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,KAAK,CAAC,CAAA;YACf,CAAC,qBAGM,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACxE,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,aAAa,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC1E,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtC,MAAM,MAAM,GAAG,KAAK,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAA;IACzC,MAAM,KAAK,GAAG,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,CAAC,MAAM,CAChD,IAAI,CAAC,EAAE,CAAC,CAAC,MAAM,IAAI,OAAO,CAAC,IAAI,EAAE,MAAM,CAAC,CACzC,CAAA;IACD,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAA;IACxC,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAkB,CAAA;IAC1C,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;QAChC,MAAM,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;QAC3B,MAAM,CAAC,GAAG,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;QACvD,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC;YAC7B,QAAQ,CAAC,GAAG,CACV,SAAS,EACT,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,IAAI,IAAI,WAAW,CAAC,SAAS,CAAE,CAC1D,CAAA;QACH,CAAC;IACH,CAAC;IACD,OAAO,CACL;QACE,oBAAC,SAAS,IACR,KAAK,EAAC,QAAQ,EACd,IAAI,EAAC,OAAO,EACZ,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YAC9B,CAAC,GACD;QACF,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,GAAI;QAClE,oBAAC,KAAK,IAAC,IAAI,EAAC,OAAO;YACjB,oBAAC,SAAS;gBACR,oBAAC,QAAQ;oBACP,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU,GAAG;oBAChC,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,oBAAsB;oBAChC,oBAAC,SAAS,eAAiB;oBAC3B,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,sBAAwB,CACzB,CACD;YACZ,oBAAC,SAAS,QACP,KAAK,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC,CAC/C,oBAAC,QAAQ,IAAC,GAAG,EAAE,SAAS;gBACtB,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU;oBAC3B,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,EAChD,QAAQ,EAAE,GAAG,EAAE;4BACb,KAAK,CAAC,SAAS,CACb,SAAS,EACT,CAAC,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,CACzC,CAAA;wBACH,CAAC,GACD,CACQ;gBACZ,oBAAC,SAAS;oBACR,6BACE,KAAK,EAAE;4BACL,KAAK,EAAE,EAAE;4BACT,MAAM,EAAE,EAAE;4BACV,UAAU,EAAE,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC;yBACpC,GACD,CACQ;gBACZ,oBAAC,SAAS,QAAE,SAAS,CAAa;gBAClC,oBAAC,SAAS,QAAE,IAAI,CAAa;gBAC7B,oBAAC,SAAS,QAAE,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAa;gBAC9C,oBAAC,SAAS,QAAE,WAAW,CAAa,CAC3B,CACZ,CAAC,CACQ,CACN,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,OAAO,EACP,KAAK,GAIN;IACC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,iBAAiB,EACvB,QAAQ,EAAC,IAAI;QAEb,oBAAC,aAAa;YACZ,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAChB,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}

package/dist/components/getVisibleLeaves.d.ts

@@ -11,4 +11,4 @@ export declare function getVisibleLeaves({ model, offsetY, blockSizeY, }: {
     model: MsaViewModel;
     offsetY: number;
     blockSizeY: number;
-}): import("../hierarchy.ts").HierarchyNode<import("../types.ts").NodeWithIdsAndLength>[];
+}): import("../hierarchy.ts").HierarchyNode<import("../types.ts").NodeWithIds>[];

package/dist/components/header/FileMenu.js

@@ -1,5 +1,6 @@
 import React, { lazy } from 'react';
 import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
+import AccountTree from '@mui/icons-material/AccountTree';
 import Assignment from '@mui/icons-material/Assignment';
 import FolderOpen from '@mui/icons-material/FolderOpen';
 import Menu from '@mui/icons-material/Menu';
@@ -37,6 +38,14 @@ const FileMenu = observer(({ model }) => {
                     model,
                 }),
             },
+            {
+                label: 'Export tree (Newick)',
+                icon: AccountTree,
+                disabled: !!model.tree.noTree,
+                onClick: () => {
+                    model.exportNewick();
+                },
+            },
             {
                 label: 'Export SVG',
                 icon: PhotoCamera,

package/dist/components/header/FileMenu.js.map

@@ -1 +1 @@
-{"version":3,"file":"FileMenu.js","sourceRoot":"","sources":["../../../src/components/header/FileMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,WAAW,MAAM,iCAAiC,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAA;AAI5D,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,8BAA+B,CAAC,CAAC,CAAA;AAC1E,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,+BAAgC,CAAC,CAAC,CAAA;AAE5E,MAAM,QAAQ,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IAC/D,OAAO,CACL,oBAAC,mBAAmB,mBACN,WAAW,EACvB,OAAO,EAAC,MAAM,EACd,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,uBAAuB;gBAC9B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,KAAK,EAAE,CAAA;gBACf,CAAC;aACF;YACD;gBACE,KAAK,EAAE,UAAU;gBACjB,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,cAAc;wBACd;4BACE,KAAK;4BACL,OAAO;yBACR;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;YACD;gBACE,KAAK,EAAE,aAAa;gBACpB,IAAI,EAAE,SAAS;gBACf,OAAO,EAAE,kBAAkB,CAAC;oBAC1B,KAAK;iBACN,CAAC;aACH;YACD;gBACE,KAAK,EAAE,YAAY;gBACnB,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf;4BACE,OAAO;4BACP,KAAK;yBACN;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;SACF,EACD,YAAY,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,eAAe,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE;QAExD,oBAAC,IAAI,OAAG,CACY,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}
+{"version":3,"file":"FileMenu.js","sourceRoot":"","sources":["../../../src/components/header/FileMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,WAAW,MAAM,iCAAiC,CAAA;AACzD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,WAAW,MAAM,iCAAiC,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAA;AAI5D,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,8BAA+B,CAAC,CAAC,CAAA;AAC1E,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,+BAAgC,CAAC,CAAC,CAAA;AAE5E,MAAM,QAAQ,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IAC/D,OAAO,CACL,oBAAC,mBAAmB,mBACN,WAAW,EACvB,OAAO,EAAC,MAAM,EACd,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,uBAAuB;gBAC9B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,KAAK,EAAE,CAAA;gBACf,CAAC;aACF;YACD;gBACE,KAAK,EAAE,UAAU;gBACjB,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,cAAc;wBACd;4BACE,KAAK;4BACL,OAAO;yBACR;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;YACD;gBACE,KAAK,EAAE,aAAa;gBACpB,IAAI,EAAE,SAAS;gBACf,OAAO,EAAE,kBAAkB,CAAC;oBAC1B,KAAK;iBACN,CAAC;aACH;YACD;gBACE,KAAK,EAAE,sBAAsB;gBAC7B,IAAI,EAAE,WAAW;gBACjB,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM;gBAC7B,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,YAAY,EAAE,CAAA;gBACtB,CAAC;aACF;YACD;gBACE,KAAK,EAAE,YAAY;gBACnB,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf;4BACE,OAAO;4BACP,KAAK;yBACN;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;SACF,EACD,YAAY,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,eAAe,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE;QAExD,oBAAC,IAAI,OAAG,CACY,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}

package/dist/components/header/GappynessSlider.js

@@ -1,15 +1,17 @@
-import React from 'react';
+import React, { useState } from 'react';
 import { Slider, Typography } from '@mui/material';
 import { observer } from 'mobx-react';
 const GappynessSlider = observer(function GappynessSlider({ model, }) {
     const { hideGaps, allowedGappyness } = model;
+    const [dragValue, setDragValue] = useState();
+    const value = dragValue ?? allowedGappyness;
     if (!hideGaps) {
         return null;
     }
     return (React.createElement("div", { style: { display: 'flex', alignItems: 'center', gap: 8 } },
         React.createElement(Typography, { style: { whiteSpace: 'nowrap' } },
             "Hide columns w/ \u2265",
-            allowedGappyness,
+            value,
             "% gaps"),
         React.createElement(Slider
         // In JBrowse other MUI Sliders share the page, so `.MuiSlider-thumb`
@@ -19,8 +21,18 @@ const GappynessSlider = observer(function GappynessSlider({ model, }) {
         //
         // Not `slotProps={{ input: ... }}`: that widens `onChange`'s `val` to
         // `number | number[]`, which setAllowedGappyness rejects.
-        , { "data-testid": "gappyness_slider", style: { width: 100 }, min: 1, max: 100, value: allowedGappyness, onChange: (_, val) => {
+        //
+        // The thumb follows local state while dragging and the model takes the
+        // value on release, since each write recomputes the gap columns over
+        // the whole alignment.
+        //
+        // The thumb centers on the track's ends, so the margin keeps its
+        // overhang off the label and the row search beside it.
+        , { "data-testid": "gappyness_slider", style: { width: 100, marginInline: 10 }, min: 1, max: 100, value: value, onChange: (_, val) => {
+                setDragValue(val);
+            }, onChangeCommitted: (_, val) => {
                 model.setAllowedGappyness(val);
+                setDragValue(undefined);
             } })));
 });
 export default GappynessSlider;

package/dist/components/header/GappynessSlider.js.map

@@ -1 +1 @@
-{"version":3,"file":"GappynessSlider.js","sourceRoot":"","sources":["../../../src/components/header/GappynessSlider.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACxD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,GAAG,EAAE,CAAC,EAAE;QAI3D,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE;;YACpB,gBAAgB;qBAC1B;QACb,oBAAC,MAAM;QACL,qEAAqE;QACrE,6DAA6D;QAC7D,wEAAwE;QACxE,yCAAyC;QACzC,EAAE;QACF,sEAAsE;QACtE,0DAA0D;2BAC9C,kBAAkB,EAC9B,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EACrB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,gBAAgB,EACvB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;YAChC,CAAC,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
+{"version":3,"file":"GappynessSlider.js","sourceRoot":"","sources":["../../../src/components/header/GappynessSlider.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACxD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAC5C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,EAAU,CAAA;IACpD,MAAM,KAAK,GAAG,SAAS,IAAI,gBAAgB,CAAA;IAC3C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,GAAG,EAAE,CAAC,EAAE;QAI3D,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE;;YACpB,KAAK;qBACf;QACb,oBAAC,MAAM;QACL,qEAAqE;QACrE,6DAA6D;QAC7D,wEAAwE;QACxE,yCAAyC;QACzC,EAAE;QACF,sEAAsE;QACtE,0DAA0D;QAC1D,EAAE;QACF,uEAAuE;QACvE,qEAAqE;QACrE,uBAAuB;QACvB,EAAE;QACF,iEAAiE;QACjE,uDAAuD;2BAC3C,kBAAkB,EAC9B,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,YAAY,EAAE,EAAE,EAAE,EACvC,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,YAAY,CAAC,GAAG,CAAC,CAAA;YACnB,CAAC,EACD,iBAAiB,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBAC5B,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;gBAC9B,YAAY,CAAC,SAAS,CAAC,CAAA;YACzB,CAAC,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}

package/dist/components/header/Header.js

@@ -3,14 +3,15 @@ import useMeasure from '@jbrowse/core/util/useMeasure';
 import Help from '@mui/icons-material/Help';
 import { IconButton, Tooltip } from '@mui/material';
 import { observer } from 'mobx-react';
+import StatusMessage from '../StatusMessage.js';
 import ColorSchemeMenu from './ColorSchemeMenu.js';
 import FileMenu from './FileMenu.js';
 import GappynessSlider from './GappynessSlider.js';
 import HeaderInfoArea from './HeaderInfoArea.js';
-import HeaderStatusArea from './HeaderStatusArea.js';
 import LoadWarnings from './LoadWarnings.js';
 import MSASettingsMenu from './MSASettingsMenu.js';
 import MultiAlignmentSelector from './MultiAlignmentSelector.js';
+import RowSearch from './RowSearch.js';
 import TreeSettingsMenu from './TreeSettingsMenu.js';
 import UnshareableDataWarning from './UnshareableDataWarning.js';
 import ZoomControls from './ZoomControls.js';
@@ -32,21 +33,19 @@ const Header = observer(function ({ model }) {
         React.createElement(ZoomControls, { model: model }),
         React.createElement(ZoomMenu, { model: model }),
         React.createElement(GappynessSlider, { model: model }),
+        React.createElement(RowSearch, { model: model }),
         React.createElement("div", { style: { paddingLeft: 20, margin: 'auto' } },
             React.createElement(MultiAlignmentSelector, { model: model })),
-        React.createElement(HeaderInfoArea, { model: model }),
-        React.createElement(Spacer, null),
+        React.createElement("div", { style: { flex: '1 1 0', minWidth: 0, display: 'flex' } },
+            React.createElement(HeaderInfoArea, { model: model })),
         React.createElement(LoadWarnings, { model: model }),
         React.createElement(UnshareableDataWarning, { model: model }),
-        React.createElement(HeaderStatusArea, { model: model }),
+        React.createElement(StatusMessage, { model: model, variant: "header" }),
         React.createElement(Tooltip, { title: "About" },
             React.createElement(IconButton, { "aria-label": "About", onClick: () => {
                     model.queueDialog(onClose => [AboutDialog, { onClose }]);
                 } },
                 React.createElement(Help, null)))));
 });
-function Spacer() {
-    return React.createElement("div", { style: { flex: 1 } });
-}
 export default Header;
 //# sourceMappingURL=Header.js.map

package/dist/components/header/Header.js.map

@@ -1 +1 @@
-{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,QAAQ,MAAM,eAAgB,CAAA;AACrC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,gBAAgB,MAAM,uBAAwB,CAAA;AACrD,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,sBAAsB,MAAM,6BAA8B,CAAA;AACjE,OAAO,gBAAgB,MAAM,uBAAwB,CAAA;AACrD,OAAO,sBAAsB,MAAM,6BAA8B,CAAA;AACjE,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,QAAQ,MAAM,eAAgB,CAAA;AAIrC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA4B,CAAC,CAAC,CAAA;AAEpE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,SAAS,CACP,GAAG,EAAE,CAAC,GAAG,EAAE;QACT,KAAK,CAAC,eAAe,CAAC,CAAC,CAAC,CAAA;IAC1B,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE;QACzD,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,6BAAK,KAAK,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;YAC7C,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC;QACN,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI;QAChC,oBAAC,MAAM,OAAG;QACV,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI;QACxC,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,OAAO,IAAC,KAAK,EAAC,OAAO;YACpB,oBAAC,UAAU,kBACE,OAAO,EAClB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBAC1D,CAAC;gBAED,oBAAC,IAAI,OAAG,CACG,CACL,CACN,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,MAAM;IACb,OAAO,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAAI,CAAA;AACpC,CAAC;AAED,eAAe,MAAM,CAAA"}
+{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,aAAa,MAAM,qBAAsB,CAAA;AAChD,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,QAAQ,MAAM,eAAgB,CAAA;AACrC,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,sBAAsB,MAAM,6BAA8B,CAAA;AACjE,OAAO,SAAS,MAAM,gBAAiB,CAAA;AACvC,OAAO,gBAAgB,MAAM,uBAAwB,CAAA;AACrD,OAAO,sBAAsB,MAAM,6BAA8B,CAAA;AACjE,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,QAAQ,MAAM,eAAgB,CAAA;AAIrC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA4B,CAAC,CAAC,CAAA;AAEpE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,SAAS,CACP,GAAG,EAAE,CAAC,GAAG,EAAE;QACT,KAAK,CAAC,eAAe,CAAC,CAAC,CAAC,CAAA;IAC1B,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE;QACzD,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI;QAC3B,6BAAK,KAAK,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;YAC7C,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC;QACN,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE;YACzD,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAC5B;QACN,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI;QACxC,oBAAC,aAAa,IAAC,KAAK,EAAE,KAAK,EAAE,OAAO,EAAC,QAAQ,GAAG;QAChD,oBAAC,OAAO,IAAC,KAAK,EAAC,OAAO;YACpB,oBAAC,UAAU,kBACE,OAAO,EAClB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBAC1D,CAAC;gBAED,oBAAC,IAAI,OAAG,CACG,CACL,CACN,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,MAAM,CAAA"}

package/dist/components/header/{HeaderStatusArea.d.ts → RowSearch.d.ts}

@@ -1,6 +1,6 @@
 import React from 'react';
 import type { MsaViewModel } from '../../model.ts';
-declare const HeaderStatusArea: ({ model }: {
+declare const RowSearch: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element | null;
-export default HeaderStatusArea;
+export default RowSearch;

package/dist/components/header/RowSearch.js

@@ -0,0 +1,15 @@
+import React from 'react';
+import { Autocomplete, TextField, createFilterOptions } from '@mui/material';
+import { observer } from 'mobx-react';
+import { findableRowNames, revealRow } from './revealRow.js';
+const filterOptions = createFilterOptions({ limit: 50 });
+const RowSearch = observer(function ({ model }) {
+    const names = findableRowNames(model);
+    return names.length > 1 ? (React.createElement(Autocomplete, { size: "small", options: names, filterOptions: filterOptions, value: null, blurOnSelect: true, onChange: (_, name) => {
+            if (name) {
+                revealRow(model, name);
+            }
+        }, style: { width: 180, margin: 'auto 8px' }, renderInput: params => (React.createElement(TextField, { ...params, placeholder: "Find row", "aria-label": "Find row" })) })) : null;
+});
+export default RowSearch;
+//# sourceMappingURL=RowSearch.js.map

package/dist/components/header/RowSearch.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"RowSearch.js","sourceRoot":"","sources":["../../../src/components/header/RowSearch.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,YAAY,EAAE,SAAS,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAA;AAC5E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAA;AAI5D,MAAM,aAAa,GAAG,mBAAmB,CAAS,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,CAAA;AAEhE,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,KAAK,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAA;IACrC,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CACxB,oBAAC,YAAY,IACX,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,KAAK,EACd,aAAa,EAAE,aAAa,EAC5B,KAAK,EAAE,IAAI,EACX,YAAY,QACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE;YACpB,IAAI,IAAI,EAAE,CAAC;gBACT,SAAS,CAAC,KAAK,EAAE,IAAI,CAAC,CAAA;YACxB,CAAC;QACH,CAAC,EACD,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,EACzC,WAAW,EAAE,MAAM,CAAC,EAAE,CAAC,CACrB,oBAAC,SAAS,OAAK,MAAM,EAAE,WAAW,EAAC,UAAU,gBAAY,UAAU,GAAG,CACvE,GACD,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}

package/dist/components/header/revealRow.d.ts

@@ -0,0 +1,3 @@
+import type { MsaViewModel } from '../../model.ts';
+export declare function findableRowNames(model: MsaViewModel): string[];
+export declare function revealRow(model: MsaViewModel, name: string): void;

package/dist/components/header/revealRow.js

@@ -0,0 +1,15 @@
+export function findableRowNames(model) {
+    const collapsed = new Set(model.collapsed);
+    return model.leaves
+        .filter(({ data: { id, name } }) => !(collapsed.has(id) && name === id))
+        .map(leaf => leaf.data.name);
+}
+export function revealRow(model, name) {
+    const index = model.rowNamesSet.get(name);
+    if (index !== undefined) {
+        const { rowHeight, msaAreaHeight } = model;
+        model.setScrollY(-(index + 0.5) * rowHeight + msaAreaHeight / 2);
+        model.setMousePos(undefined, index);
+    }
+}
+//# sourceMappingURL=revealRow.js.map

package/dist/components/header/revealRow.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"revealRow.js","sourceRoot":"","sources":["../../../src/components/header/revealRow.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,gBAAgB,CAAC,KAAmB;IAClD,MAAM,SAAS,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,CAAA;IAC1C,OAAO,KAAK,CAAC,MAAM;SAChB,MAAM,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,IAAI,KAAK,EAAE,CAAC,CAAC;SACvE,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;AAChC,CAAC;AAED,MAAM,UAAU,SAAS,CAAC,KAAmB,EAAE,IAAY;IACzD,MAAM,KAAK,GAAG,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;IACzC,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;QACxB,MAAM,EAAE,SAAS,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;QAC1C,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,SAAS,GAAG,aAAa,GAAG,CAAC,CAAC,CAAA;QAChE,KAAK,CAAC,WAAW,CAAC,SAAS,EAAE,KAAK,CAAC,CAAA;IACrC,CAAC;AACH,CAAC"}

package/dist/components/header/settingsMenuItems.js

@@ -1,3 +1,19 @@
+import { treeOrders } from '../../constants.js';
+function radio(label, checked, onClick) {
+    return { label, type: 'radio', checked, onClick };
+}
+const treeOrderLabels = {
+    branchLength: 'By branch length',
+    input: 'As written',
+    ladderize: 'Ladderize, small clades first',
+    ladderizeReverse: 'Ladderize, large clades first',
+};
+function outgroupLabel(outgroup) {
+    const [first, ...rest] = outgroup;
+    return rest.length === 0
+        ? `Outgroup ${first}`
+        : `Outgroup ${first} … ${rest.at(-1)}`;
+}
 function toggle(label, checked, set) {
     return {
         label,
@@ -40,8 +56,48 @@ export function msaSettingsMenuItems(model) {
     ];
 }
 export function treeSettingsMenuItems(model) {
-    const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, drawNodeLabels, drawLabels, showTreeOverview, } = model;
+    const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, drawNodeLabels, drawLabels, showTreeOverview, treeOrder, treeRoot, rotated, } = model;
     return [
+        {
+            label: 'Order',
+            type: 'subMenu',
+            subMenu: [
+                ...treeOrders.map(order => radio(treeOrderLabels[order], treeOrder === order, () => {
+                    model.setTreeOrder(order);
+                })),
+                { type: 'divider' },
+                {
+                    label: 'Undo rotations',
+                    disabled: rotated.length === 0,
+                    onClick: () => {
+                        model.clearRotated();
+                    },
+                },
+            ],
+        },
+        {
+            label: 'Root',
+            type: 'subMenu',
+            subMenu: [
+                radio('As written', treeRoot === undefined, () => {
+                    model.setTreeRoot(undefined);
+                }),
+                radio('Midpoint', treeRoot === 'midpoint', () => {
+                    model.setTreeRoot('midpoint');
+                }),
+                // "Reroot here" in a node's menu sets the outgroup, so this only
+                // reports it
+                ...(typeof treeRoot === 'object'
+                    ? [
+                        {
+                            ...radio(outgroupLabel(treeRoot.outgroup), true, () => { }),
+                            disabled: true,
+                        },
+                    ]
+                    : []),
+            ],
+        },
+        { type: 'divider' },
         toggle('Show branch length', showBranchLen, arg => {
             model.setShowBranchLen(arg);
         }),

package/dist/components/header/settingsMenuItems.js.map

@@ -1 +1 @@
-{"version":3,"file":"settingsMenuItems.js","sourceRoot":"","sources":["../../../src/components/header/settingsMenuItems.ts"],"names":[],"mappings":"AAGA,SAAS,MAAM,CAAC,KAAa,EAAE,OAAgB,EAAE,GAA2B;IAC1E,OAAO;QACL,KAAK;QACL,IAAI,EAAE,UAAmB;QACzB,OAAO;QACP,OAAO,EAAE,GAAG,EAAE;YACZ,GAAG,CAAC,CAAC,OAAO,CAAC,CAAA;QACf,CAAC;KACF,CAAA;AACH,CAAC;AAED,0DAA0D;AAC1D,SAAS,aAAa,CAAC,KAAmB;IACxC,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAA;IAChE,OAAO,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,CAClD,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE;QAC/B,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;IACvB,CAAC,CAAC,CACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,KAAmB;IACtD,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACpE,OAAO;QACL;YACE,KAAK,EAAE,QAAQ;YACf,IAAI,EAAE,SAAkB;YACxB,OAAO,EAAE,aAAa,CAAC,KAAK,CAAC;SAC9B;QACD,EAAE,IAAI,EAAE,SAAkB,EAAE;QAC5B,MAAM,CAAC,4BAA4B,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC1D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,cAAc,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE;YAC3C,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,CAAA;QAC9B,CAAC,CAAC;QACF,+DAA+D;QAC/D,MAAM,CAAC,0BAA0B,EAAE,CAAC,OAAO,EAAE,GAAG,CAAC,EAAE;YACjD,KAAK,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,oBAAoB,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YAC3C,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;KACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,KAAmB;IACvD,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,UAAU,EACV,gBAAgB,GACjB,GAAG,KAAK,CAAA;IACT,OAAO;QACL,MAAM,CAAC,oBAAoB,EAAE,aAAa,EAAE,GAAG,CAAC,EAAE;YAChD,KAAK,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAA;QAC7B,CAAC,CAAC;QACF,MAAM,CAAC,WAAW,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YAClC,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,+BAA+B,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC7D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,2BAA2B,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE;YACxD,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,CAAA;QAC9B,CAAC,CAAC;QACF,MAAM,CAAC,oBAAoB,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE;YACnD,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC,CAAC;QACF,MAAM,CAAC,yBAAyB,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE;YACxD,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC,CAAC;QACF,MAAM,CAAC,aAAa,EAAE,UAAU,EAAE,GAAG,CAAC,EAAE;YACtC,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,CAAA;QAC1B,CAAC,CAAC;KACH,CAAA;AACH,CAAC"}
+{"version":3,"file":"settingsMenuItems.js","sourceRoot":"","sources":["../../../src/components/header/settingsMenuItems.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAM/C,SAAS,KAAK,CAAC,KAAa,EAAE,OAAgB,EAAE,OAAmB;IACjE,OAAO,EAAE,KAAK,EAAE,IAAI,EAAE,OAAgB,EAAE,OAAO,EAAE,OAAO,EAAE,CAAA;AAC5D,CAAC;AAED,MAAM,eAAe,GAA8B;IACjD,YAAY,EAAE,kBAAkB;IAChC,KAAK,EAAE,YAAY;IACnB,SAAS,EAAE,+BAA+B;IAC1C,gBAAgB,EAAE,+BAA+B;CAClD,CAAA;AAED,SAAS,aAAa,CAAC,QAAkB;IACvC,MAAM,CAAC,KAAK,EAAE,GAAG,IAAI,CAAC,GAAG,QAAQ,CAAA;IACjC,OAAO,IAAI,CAAC,MAAM,KAAK,CAAC;QACtB,CAAC,CAAC,YAAY,KAAK,EAAE;QACrB,CAAC,CAAC,YAAY,KAAK,MAAM,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;AAC1C,CAAC;AAED,SAAS,MAAM,CAAC,KAAa,EAAE,OAAgB,EAAE,GAA2B;IAC1E,OAAO;QACL,KAAK;QACL,IAAI,EAAE,UAAmB;QACzB,OAAO;QACP,OAAO,EAAE,GAAG,EAAE;YACZ,GAAG,CAAC,CAAC,OAAO,CAAC,CAAA;QACf,CAAC;KACF,CAAA;AACH,CAAC;AAED,0DAA0D;AAC1D,SAAS,aAAa,CAAC,KAAmB;IACxC,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAA;IAChE,OAAO,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,CAClD,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE;QAC/B,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;IACvB,CAAC,CAAC,CACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,KAAmB;IACtD,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACpE,OAAO;QACL;YACE,KAAK,EAAE,QAAQ;YACf,IAAI,EAAE,SAAkB;YACxB,OAAO,EAAE,aAAa,CAAC,KAAK,CAAC;SAC9B;QACD,EAAE,IAAI,EAAE,SAAkB,EAAE;QAC5B,MAAM,CAAC,4BAA4B,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC1D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,cAAc,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE;YAC3C,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,CAAA;QAC9B,CAAC,CAAC;QACF,+DAA+D;QAC/D,MAAM,CAAC,0BAA0B,EAAE,CAAC,OAAO,EAAE,GAAG,CAAC,EAAE;YACjD,KAAK,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,oBAAoB,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YAC3C,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;KACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,KAAmB;IACvD,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,UAAU,EACV,gBAAgB,EAChB,SAAS,EACT,QAAQ,EACR,OAAO,GACR,GAAG,KAAK,CAAA;IACT,OAAO;QACL;YACE,KAAK,EAAE,OAAO;YACd,IAAI,EAAE,SAAkB;YACxB,OAAO,EAAE;gBACP,GAAG,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CACxB,KAAK,CAAC,eAAe,CAAC,KAAK,CAAC,EAAE,SAAS,KAAK,KAAK,EAAE,GAAG,EAAE;oBACtD,KAAK,CAAC,YAAY,CAAC,KAAK,CAAC,CAAA;gBAC3B,CAAC,CAAC,CACH;gBACD,EAAE,IAAI,EAAE,SAAkB,EAAE;gBAC5B;oBACE,KAAK,EAAE,gBAAgB;oBACvB,QAAQ,EAAE,OAAO,CAAC,MAAM,KAAK,CAAC;oBAC9B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,YAAY,EAAE,CAAA;oBACtB,CAAC;iBACF;aACF;SACF;QACD;YACE,KAAK,EAAE,MAAM;YACb,IAAI,EAAE,SAAkB;YACxB,OAAO,EAAE;gBACP,KAAK,CAAC,YAAY,EAAE,QAAQ,KAAK,SAAS,EAAE,GAAG,EAAE;oBAC/C,KAAK,CAAC,WAAW,CAAC,SAAS,CAAC,CAAA;gBAC9B,CAAC,CAAC;gBACF,KAAK,CAAC,UAAU,EAAE,QAAQ,KAAK,UAAU,EAAE,GAAG,EAAE;oBAC9C,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;gBAC/B,CAAC,CAAC;gBACF,iEAAiE;gBACjE,aAAa;gBACb,GAAG,CAAC,OAAO,QAAQ,KAAK,QAAQ;oBAC9B,CAAC,CAAC;wBACE;4BACE,GAAG,KAAK,CAAC,aAAa,CAAC,QAAQ,CAAC,QAAQ,CAAC,EAAE,IAAI,EAAE,GAAG,EAAE,GAAE,CAAC,CAAC;4BAC1D,QAAQ,EAAE,IAAI;yBACf;qBACF;oBACH,CAAC,CAAC,EAAE,CAAC;aACR;SACF;QACD,EAAE,IAAI,EAAE,SAAkB,EAAE;QAC5B,MAAM,CAAC,oBAAoB,EAAE,aAAa,EAAE,GAAG,CAAC,EAAE;YAChD,KAAK,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAA;QAC7B,CAAC,CAAC;QACF,MAAM,CAAC,WAAW,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YAClC,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,+BAA+B,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC7D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,2BAA2B,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE;YACxD,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,CAAA;QAC9B,CAAC,CAAC;QACF,MAAM,CAAC,oBAAoB,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE;YACnD,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC,CAAC;QACF,MAAM,CAAC,yBAAyB,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE;YACxD,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC,CAAC;QACF,MAAM,CAAC,aAAa,EAAE,UAAU,EAAE,GAAG,CAAC,EAAE;YACtC,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,CAAA;QAC1B,CAAC,CAAC;KACH,CAAA;AACH,CAAC"}

package/dist/components/import/ImportForm.js

@@ -1,24 +1,30 @@
 import React, { useState } from 'react';
 import { ErrorMessage, FileSelector } from '@jbrowse/core/ui';
-import { Button, Container, Typography } from '@mui/material';
+import { Box, Button, Container, Typography } from '@mui/material';
 import { observer } from 'mobx-react';
 import ImportFormExamples from './ImportFormExamples.js';
 import { load } from './util.js';
+const phone = '@media (max-width: 640px)';
 const ImportForm = observer(function ({ model }) {
     const [msaFile, setMsaFile] = useState();
     const [treeFile, setTreeFile] = useState();
     const [gffFile, setGffFile] = useState();
     const { error } = model;
     return (React.createElement(Container, null,
-        React.createElement("div", { style: { width: '50%' } },
+        React.createElement(Box, { sx: { width: '50%', [phone]: { width: '100%' } } },
             error ? React.createElement(ErrorMessage, { error: error }) : null,
             React.createElement(Typography, null, "Open an MSA file (FASTA, Stockholm, Clustal, A3M or EMF format) and/or a tree file (Newick format)."),
             React.createElement(Typography, { color: "text.secondary" }, "An MSA alone or a tree alone is enough, and a Stockholm file with an embedded tree needs no separate tree file.")),
-        React.createElement("div", { style: {
+        React.createElement(Box, { sx: {
                 display: 'flex',
                 justifyContent: 'center',
                 alignItems: 'center',
-                gap: 40,
+                gap: '40px',
+                [phone]: {
+                    flexDirection: 'column',
+                    alignItems: 'stretch',
+                    gap: '16px',
+                },
             } },
             React.createElement("div", null,
                 React.createElement("div", null,

package/dist/components/import/ImportForm.js.map

@@ -1 +1 @@
-{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/components/import/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC7D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,kBAAkB,MAAM,yBAA0B,CAAA;AACzD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAA;AAKhC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAEvB,OAAO,CACL,oBAAC,SAAS;QACR,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE;YACzB,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,8GAGE;YACb,oBAAC,UAAU,IAAC,KAAK,EAAC,gBAAgB,sHAGrB,CACT;QAEN,6BACE,KAAK,EAAE;gBACL,OAAO,EAAE,MAAM;gBACf,cAAc,EAAE,QAAQ;gBACxB,UAAU,EAAE,QAAQ;gBACpB,GAAG,EAAE,EAAE;aACR;YAED;gBACE;oBACE,oBAAC,UAAU,0BAA6B;oBACxC,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CACxD;gBACN;oBACE,oBAAC,UAAU,2BAA8B;oBACzC,oBAAC,YAAY,IAAC,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,WAAW,GAAI,CAC1D;gBACN;oBACE,oBAAC,UAAU,gDAAmD;oBAC9D,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CACxD,CACF;YACN;gBACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;wBACZ,IAAI,CAAC;4BACH,IAAI,CAAC,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAA;wBACzC,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACnB,CAAC;oBACH,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,OAAO,IAAI,CAAC,QAAQ,WAGxB,CACL;YAEN;gBACE,oBAAC,UAAU,mBAAsB;gBACjC,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CAChC,CACF,CACI,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
+{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/components/import/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClE,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,kBAAkB,MAAM,yBAA0B,CAAA;AACzD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAA;AAKhC,MAAM,KAAK,GAAG,2BAA2B,CAAA;AAEzC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAEvB,OAAO,CACL,oBAAC,SAAS;QACR,oBAAC,GAAG,IAAC,EAAE,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,EAAE;YAClD,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,8GAGE;YACb,oBAAC,UAAU,IAAC,KAAK,EAAC,gBAAgB,sHAGrB,CACT;QAEN,oBAAC,GAAG,IACF,EAAE,EAAE;gBACF,OAAO,EAAE,MAAM;gBACf,cAAc,EAAE,QAAQ;gBACxB,UAAU,EAAE,QAAQ;gBACpB,GAAG,EAAE,MAAM;gBACX,CAAC,KAAK,CAAC,EAAE;oBACP,aAAa,EAAE,QAAQ;oBACvB,UAAU,EAAE,SAAS;oBACrB,GAAG,EAAE,MAAM;iBACZ;aACF;YAED;gBACE;oBACE,oBAAC,UAAU,0BAA6B;oBACxC,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CACxD;gBACN;oBACE,oBAAC,UAAU,2BAA8B;oBACzC,oBAAC,YAAY,IAAC,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,WAAW,GAAI,CAC1D;gBACN;oBACE,oBAAC,UAAU,gDAAmD;oBAC9D,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI,CACxD,CACF;YACN;gBACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;wBACZ,IAAI,CAAC;4BACH,IAAI,CAAC,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAA;wBACzC,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACnB,CAAC;oBACH,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,OAAO,IAAI,CAAC,QAAQ,WAGxB,CACL;YAEN;gBACE,oBAAC,UAAU,mBAAsB;gBACjC,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CAChC,CACF,CACI,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/components/import/ImportFormExamples.js

@@ -1,48 +1,40 @@
 import React from 'react';
 import { Link, Typography } from '@mui/material';
 import { observer } from 'mobx-react';
-import { smallMSA, smallMSAOnly, smallTree } from './data/seq2.js';
+import { smallMSA, smallTree } from './data/seq2.js';
 import { load } from './util.js';
 const BASE = 'https://jbrowse.org/genomes/multiple_sequence_alignments';
 const TREES = 'https://jbrowse.org/genomes/newick_trees';
+const DEMO = 'https://gmod.org/JBrowseMSA/demo/data';
 const examples = [
     {
-        label: '230k COVID-19 samples (tree only)',
-        tree: `${TREES}/sarscov2phylo.pub.ft.nh`,
-    },
-    {
-        label: 'Small protein MSA+tree',
-        inline: { msa: smallMSA, tree: smallTree },
-    },
-    {
-        label: 'Small MSA only',
-        inline: { msa: smallMSAOnly },
-    },
-    {
-        label: 'PFAM SARS-CoV2 multi-stockholm with domains',
-        msa: `${BASE}/pfam-cov2.stock`,
-        gff: `${BASE}/pfam-cov2-domains.gff`,
+        label: 'NLRP1 in 12 mammals, with Pfam domains',
+        msa: `${DEMO}/nlrp1.aln`,
+        tree: `${DEMO}/nlrp1.nh`,
+        gff: `${DEMO}/nlrp1-domains.gff`,
     },
     {
-        label: 'Lysine stockholm file',
-        msa: `${BASE}/Lysine.stock`,
+        label: '474 human protein kinase domains, with a FastTree tree',
+        msa: `${DEMO}/kinase-pocket/kinase-pocket.afa`,
+        tree: `${DEMO}/kinase-pocket/kinase-pocket.nwk`,
     },
     {
-        label: 'PF01601 stockholm file (SARS-CoV2 spike protein)',
-        msa: `${BASE}/PF01601_full.txt`,
+        label: 'RSV-A G gene in 1,840 genomes, with the Nextstrain tree',
+        msa: `${DEMO}/scale/rsv-full.aln`,
+        tree: `${DEMO}/scale/rsv-full.nh`,
     },
     {
-        label: 'Europe COVID full genomes (LR883044.1 and 199 other sequences)',
-        msa: `${BASE}/europe_covid.fa`,
+        label: '230k COVID-19 samples (tree only)',
+        tree: `${TREES}/sarscov2phylo.pub.ft.nh`,
     },
     {
-        label: 'MAFFT+VeryFastTree(17.9k samples)',
-        msa: `${BASE}/rhv_test-only.aligned_with_mafft_auto.fa`,
-        tree: `${BASE}/rhv_test-only.aligned_with_mafft_auto.nh`,
+        label: 'Pfam SARS-CoV-2 families, multi-Stockholm with domains',
+        msa: `${BASE}/pfam-cov2.stock`,
+        gff: `${BASE}/pfam-cov2-domains.gff`,
     },
     {
-        label: 'Human BLAST results mfa',
-        msa: 'https://jbrowse.org/demos/ttc39a.mfa',
+        label: 'Small protein alignment and tree',
+        inline: { msa: smallMSA, tree: smallTree },
     },
 ];
 function uri(url) {

package/dist/components/import/ImportFormExamples.js.map

@@ -1 +1 @@
-{"version":3,"file":"ImportFormExamples.js","sourceRoot":"","sources":["../../../src/components/import/ImportFormExamples.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAA;AAClE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAA;AAIhC,MAAM,IAAI,GAAG,0DAA0D,CAAA;AACvE,MAAM,KAAK,GAAG,0CAA0C,CAAA;AAYxD,MAAM,QAAQ,GAAc;IAC1B;QACE,KAAK,EAAE,mCAAmC;QAC1C,IAAI,EAAE,GAAG,KAAK,0BAA0B;KACzC;IACD;QACE,KAAK,EAAE,wBAAwB;QAC/B,MAAM,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,SAAS,EAAE;KAC3C;IACD;QACE,KAAK,EAAE,gBAAgB;QACvB,MAAM,EAAE,EAAE,GAAG,EAAE,YAAY,EAAE;KAC9B;IACD;QACE,KAAK,EAAE,6CAA6C;QACpD,GAAG,EAAE,GAAG,IAAI,kBAAkB;QAC9B,GAAG,EAAE,GAAG,IAAI,wBAAwB;KACrC;IACD;QACE,KAAK,EAAE,uBAAuB;QAC9B,GAAG,EAAE,GAAG,IAAI,eAAe;KAC5B;IACD;QACE,KAAK,EAAE,kDAAkD;QACzD,GAAG,EAAE,GAAG,IAAI,mBAAmB;KAChC;IACD;QACE,KAAK,EAAE,gEAAgE;QACvE,GAAG,EAAE,GAAG,IAAI,kBAAkB;KAC/B;IACD;QACE,KAAK,EAAE,mCAAmC;QAC1C,GAAG,EAAE,GAAG,IAAI,2CAA2C;QACvD,IAAI,EAAE,GAAG,IAAI,2CAA2C;KACzD;IACD;QACE,KAAK,EAAE,yBAAyB;QAChC,GAAG,EAAE,sCAAsC;KAC5C;CACF,CAAA;AAED,SAAS,GAAG,CAAC,GAAY;IACvB,OAAO,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,YAAY,EAAE,aAAsB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;AAC7E,CAAC;AAED,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,KAAK,GAGN;IACC,OAAO,CACL,gCACG,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,MAAM,EAAE,EAAE,EAAE,CAAC,CACnD,4BAAI,GAAG,EAAE,KAAK;QACZ,oBAAC,IAAI,IACH,IAAI,EAAC,GAAG,EACR,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,KAAK,CAAC,cAAc,EAAE,CAAA;gBACtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;gBACzB,IAAI,CAAC;oBACH,IAAI,MAAM,EAAE,CAAC;wBACX,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;oBACvB,CAAC;yBAAM,CAAC;wBACN,IAAI,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;oBAC5C,CAAC;gBACH,CAAC;gBAAC,OAAO,CAAC,EAAE,CAAC;oBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;oBAChB,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;gBACnB,CAAC;YACH,CAAC;YAED,oBAAC,UAAU,IAAC,SAAS,EAAC,MAAM,IAAE,KAAK,CAAc,CAC5C,CACJ,CACN,CAAC,CACC,CACN,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}
+{"version":3,"file":"ImportFormExamples.js","sourceRoot":"","sources":["../../../src/components/import/ImportFormExamples.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAA;AACpD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAA;AAIhC,MAAM,IAAI,GAAG,0DAA0D,CAAA;AACvE,MAAM,KAAK,GAAG,0CAA0C,CAAA;AACxD,MAAM,IAAI,GAAG,uCAAuC,CAAA;AAYpD,MAAM,QAAQ,GAAc;IAC1B;QACE,KAAK,EAAE,wCAAwC;QAC/C,GAAG,EAAE,GAAG,IAAI,YAAY;QACxB,IAAI,EAAE,GAAG,IAAI,WAAW;QACxB,GAAG,EAAE,GAAG,IAAI,oBAAoB;KACjC;IACD;QACE,KAAK,EAAE,wDAAwD;QAC/D,GAAG,EAAE,GAAG,IAAI,kCAAkC;QAC9C,IAAI,EAAE,GAAG,IAAI,kCAAkC;KAChD;IACD;QACE,KAAK,EAAE,yDAAyD;QAChE,GAAG,EAAE,GAAG,IAAI,qBAAqB;QACjC,IAAI,EAAE,GAAG,IAAI,oBAAoB;KAClC;IACD;QACE,KAAK,EAAE,mCAAmC;QAC1C,IAAI,EAAE,GAAG,KAAK,0BAA0B;KACzC;IACD;QACE,KAAK,EAAE,wDAAwD;QAC/D,GAAG,EAAE,GAAG,IAAI,kBAAkB;QAC9B,GAAG,EAAE,GAAG,IAAI,wBAAwB;KACrC;IACD;QACE,KAAK,EAAE,kCAAkC;QACzC,MAAM,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,SAAS,EAAE;KAC3C;CACF,CAAA;AAED,SAAS,GAAG,CAAC,GAAY;IACvB,OAAO,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,YAAY,EAAE,aAAsB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;AAC7E,CAAC;AAED,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,KAAK,GAGN;IACC,OAAO,CACL,gCACG,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,MAAM,EAAE,EAAE,EAAE,CAAC,CACnD,4BAAI,GAAG,EAAE,KAAK;QACZ,oBAAC,IAAI,IACH,IAAI,EAAC,GAAG,EACR,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,KAAK,CAAC,cAAc,EAAE,CAAA;gBACtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;gBACzB,IAAI,CAAC;oBACH,IAAI,MAAM,EAAE,CAAC;wBACX,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;oBACvB,CAAC;yBAAM,CAAC;wBACN,IAAI,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;oBAC5C,CAAC;gBACH,CAAC;gBAAC,OAAO,CAAC,EAAE,CAAC;oBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;oBAChB,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;gBACnB,CAAC;YACH,CAAC;YAED,oBAAC,UAAU,IAAC,SAAS,EAAC,MAAM,IAAE,KAAK,CAAc,CAC5C,CACJ,CACN,CAAC,CACC,CACN,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}

package/dist/components/minimap/Minimap.js

@@ -39,7 +39,12 @@ const Minimap = observer(function ({ model }) {
             width: msaCanvasWidth,
             flexShrink: 0,
         } },
-        React.createElement("canvas", { ref: ref, width: barWidth, height: barHeight, style: {
+        React.createElement("canvas", { ref: ref, width: barWidth, height: barHeight, onMouseDown: event => {
+                if (event.button === 0 && unit > 0) {
+                    const x = event.clientX - event.currentTarget.getBoundingClientRect().left;
+                    model.setScrollX(-x / unit + msaCanvasWidth / 2);
+                }
+            }, style: {
                 display: 'block',
                 width: msaCanvasWidth,
                 height: MINIMAP_BAR_HEIGHT,

package/dist/components/minimap/Minimap.js.map

@@ -1 +1 @@
-{"version":3,"file":"Minimap.js","sourceRoot":"","sources":["../../../src/components/minimap/Minimap.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,OAAO,CAAA;AAE1C,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,UAAU,EAAE,EAAE,kBAAkB,EAAE,MAAM,kBAAmB,CAAA;AAClE,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAA;AAClD,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAA;AAIzE,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACnE,MAAM,EAAE,aAAa,EAAE,cAAc,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAA;IAE5E,+CAA+C;IAC/C,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,kBAAkB,CAAC,CAAA;IAChE,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,kBAAkB,GAAG,kBAAkB,CAAC,CAAA;IACrE,MAAM,GAAG,GAAG,gBAAgB,CAAC;QAC3B,IAAI,EAAE,GAAG,CAAC,EAAE;YACV,GAAG,CAAC,cAAc,EAAE,CAAA;YACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;YACxC,MAAM,SAAS,GAAG,YAAY,CAAC;gBAC7B,KAAK;gBACL,KAAK;gBACL,MAAM,EAAE,kBAAkB;aAC3B,CAAC,CAAA;YACF,IAAI,SAAS,EAAE,CAAC;gBACd,GAAG,CAAC,qBAAqB,GAAG,IAAI,CAAA;gBAChC,GAAG,CAAC,SAAS,CACX,SAAS,EACT,CAAC,EACD,CAAC,EACD,SAAS,CAAC,KAAK,EACf,SAAS,CAAC,MAAM,EAChB,CAAC,EACD,CAAC,EACD,QAAQ,EACR,SAAS,CACV,CAAA;YACH,CAAC;QACH,CAAC;QACD,KAAK,EAAE,QAAQ;QACf,MAAM,EAAE,SAAS;QACjB,IAAI,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC;KACrB,CAAC,CAAA;IAEF,MAAM,MAAM,GAAG,WAAW,CACxB,CAAC,KAAa,EAAE,WAAmB,EAAE,EAAE;QACrC,KAAK,CAAC,UAAU,CAAC,WAAW,GAAG,KAAK,GAAG,IAAI,CAAC,CAAA;IAC9C,CAAC,EACD,CAAC,KAAK,EAAE,IAAI,CAAC,CACd,CAAA;IAED,OAAO,CAIL,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,aAAa;YACrB,KAAK,EAAE,cAAc;YACrB,UAAU,EAAE,CAAC;SACd;QAED,gCACE,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,QAAQ,EACf,MAAM,EAAE,SAAS,EACjB,KAAK,EAAE;gBACL,OAAO,EAAE,OAAO;gBAChB,KAAK,EAAE,cAAc;gBACrB,MAAM,EAAE,kBAAkB;gBAC1B,SAAS,EAAE,YAAY;gBACvB,MAAM,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE;aACpD,GACD;QACF,oBAAC,UAAU,IACT,IAAI,EAAC,GAAG,EACR,OAAO,EAAC,OAAO,EACf,QAAQ,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,OAAO,EAC7B,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;gBACL,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;gBACpB,MAAM,EAAE,kBAAkB;gBAC1B,KAAK,EAAE,CAAC;aACT,GACD;QAEF,6BAAK,MAAM,EAAE,aAAa,EAAE,KAAK,EAAE,cAAc;YAC/C,iCAAS,IAAI,EAAE,kBAAkB,EAAE,MAAM,EAAE,aAAa,GAAI,CACxD,CACF,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,OAAO,CAAA"}
+{"version":3,"file":"Minimap.js","sourceRoot":"","sources":["../../../src/components/minimap/Minimap.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,OAAO,CAAA;AAE1C,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,UAAU,EAAE,EAAE,kBAAkB,EAAE,MAAM,kBAAmB,CAAA;AAClE,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAA;AAClD,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAA;AAIzE,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACnE,MAAM,EAAE,aAAa,EAAE,cAAc,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAA;IAE5E,+CAA+C;IAC/C,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,kBAAkB,CAAC,CAAA;IAChE,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,kBAAkB,GAAG,kBAAkB,CAAC,CAAA;IACrE,MAAM,GAAG,GAAG,gBAAgB,CAAC;QAC3B,IAAI,EAAE,GAAG,CAAC,EAAE;YACV,GAAG,CAAC,cAAc,EAAE,CAAA;YACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;YACxC,MAAM,SAAS,GAAG,YAAY,CAAC;gBAC7B,KAAK;gBACL,KAAK;gBACL,MAAM,EAAE,kBAAkB;aAC3B,CAAC,CAAA;YACF,IAAI,SAAS,EAAE,CAAC;gBACd,GAAG,CAAC,qBAAqB,GAAG,IAAI,CAAA;gBAChC,GAAG,CAAC,SAAS,CACX,SAAS,EACT,CAAC,EACD,CAAC,EACD,SAAS,CAAC,KAAK,EACf,SAAS,CAAC,MAAM,EAChB,CAAC,EACD,CAAC,EACD,QAAQ,EACR,SAAS,CACV,CAAA;YACH,CAAC;QACH,CAAC;QACD,KAAK,EAAE,QAAQ;QACf,MAAM,EAAE,SAAS;QACjB,IAAI,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC;KACrB,CAAC,CAAA;IAEF,MAAM,MAAM,GAAG,WAAW,CACxB,CAAC,KAAa,EAAE,WAAmB,EAAE,EAAE;QACrC,KAAK,CAAC,UAAU,CAAC,WAAW,GAAG,KAAK,GAAG,IAAI,CAAC,CAAA;IAC9C,CAAC,EACD,CAAC,KAAK,EAAE,IAAI,CAAC,CACd,CAAA;IAED,OAAO,CAIL,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,aAAa;YACrB,KAAK,EAAE,cAAc;YACrB,UAAU,EAAE,CAAC;SACd;QAED,gCACE,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,QAAQ,EACf,MAAM,EAAE,SAAS,EACjB,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,IAAI,IAAI,GAAG,CAAC,EAAE,CAAC;oBACnC,MAAM,CAAC,GACL,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,aAAa,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;oBAClE,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,cAAc,GAAG,CAAC,CAAC,CAAA;gBAClD,CAAC;YACH,CAAC,EACD,KAAK,EAAE;gBACL,OAAO,EAAE,OAAO;gBAChB,KAAK,EAAE,cAAc;gBACrB,MAAM,EAAE,kBAAkB;gBAC1B,SAAS,EAAE,YAAY;gBACvB,MAAM,EAAE,aAAa,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE;aACpD,GACD;QACF,oBAAC,UAAU,IACT,IAAI,EAAC,GAAG,EACR,OAAO,EAAC,OAAO,EACf,QAAQ,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,OAAO,EAC7B,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;gBACL,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;gBACpB,MAAM,EAAE,kBAAkB;gBAC1B,KAAK,EAAE,CAAC;aACT,GACD;QAEF,6BAAK,MAAM,EAAE,aAAa,EAAE,KAAK,EAAE,cAAc;YAC/C,iCAAS,IAAI,EAAE,kBAAkB,EAAE,MAAM,EAAE,aAAa,GAAI,CACxD,CACF,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,OAAO,CAAA"}

package/dist/components/msa/AnnotationLegend.js

@@ -19,10 +19,13 @@ const AnnotationLegend = observer(function ({ model, }) {
             display: 'flex',
             flexDirection: 'column',
             opacity: 0.95,
+            pointerEvents: 'none',
         } },
-        React.createElement(IconButton, { size: "small", title: expanded ? 'Collapse key' : 'Expand key', style: expanded
-                ? { position: 'absolute', top: 0, right: 0, padding: 1 }
-                : { padding: 1 }, onClick: () => {
+        React.createElement(IconButton, { size: "small", title: expanded ? 'Collapse key' : 'Expand key', style: {
+                padding: 1,
+                pointerEvents: 'auto',
+                ...(expanded && { position: 'absolute', top: 0, right: 0 }),
+            }, onClick: () => {
                 model.setShowDomainLegend(!expanded);
             } },
             React.createElement(ExpandIcon, { style: { fontSize: 14 } })),
@@ -31,17 +34,20 @@ const AnnotationLegend = observer(function ({ model, }) {
                 alignItems: 'center',
                 gap: 4,
                 marginRight: i === 0 ? 18 : 0,
-            }, title: row.hint },
+            } },
             row.color ? (React.createElement("div", { style: {
                     width: 9,
                     height: 9,
                     flexShrink: 0,
                     background: row.color,
                 } })) : null,
-            React.createElement(Typography, { variant: "caption", noWrap: true, style: {
+            React.createElement(Typography, { variant: "caption", noWrap: true, title: row.hint && row.hint !== row.label
+                    ? `${row.label} (${row.hint})`
+                    : row.label, style: {
                     fontSize: 10,
                     lineHeight: 1.4,
                     fontWeight: row.color ? undefined : 'bold',
+                    pointerEvents: 'auto',
                 } }, row.label)))))) : null)) : null;
 });
 export default AnnotationLegend;

package/dist/components/msa/AnnotationLegend.js.map

@@ -1 +1 @@
-{"version":3,"file":"AnnotationLegend.js","sourceRoot":"","sources":["../../../src/components/msa/AnnotationLegend.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC7D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAA;AAI5C,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,EAC1C,KAAK,GAGN;IACC,MAAM,EAAE,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IACrD,MAAM,IAAI,GAAG,UAAU,CAAC,OAAO,CAAC,CAAA;IAChC,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,UAAU,CAAA;IAErD,OAAO,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CACvB,oBAAC,KAAK,IACJ,SAAS,EAAE,CAAC,EACZ,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,GAAG,EAAE,CAAC;YACN,KAAK,EAAE,CAAC;YACR,MAAM,EAAE,YAAY;YACpB,QAAQ,EAAE,GAAG;YACb,SAAS,EAAE,KAAK;YAChB,OAAO,EAAE,MAAM;YACf,aAAa,EAAE,QAAQ;YACvB,OAAO,EAAE,IAAI;SACd;QAED,oBAAC,UAAU,IACT,IAAI,EAAC,OAAO,EACZ,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,YAAY,EAC/C,KAAK,EACH,QAAQ;gBACN,CAAC,CAAC,EAAE,QAAQ,EAAE,UAAU,EAAE,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE;gBACxD,CAAC,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,EAEpB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,mBAAmB,CAAC,CAAC,QAAQ,CAAC,CAAA;YACtC,CAAC;YAED,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,GAAI,CAC5B;QACZ,QAAQ,CAAC,CAAC,CAAC,CACV,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,IACrD,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,CACpB,6BACE,GAAG,EAAE,GAAG,CAAC,GAAG,EACZ,KAAK,EAAE;gBACL,OAAO,EAAE,MAAM;gBACf,UAAU,EAAE,QAAQ;gBACpB,GAAG,EAAE,CAAC;gBACN,WAAW,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;aAC9B,EACD,KAAK,EAAE,GAAG,CAAC,IAAI;YAEd,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CACX,6BACE,KAAK,EAAE;oBACL,KAAK,EAAE,CAAC;oBACR,MAAM,EAAE,CAAC;oBACT,UAAU,EAAE,CAAC;oBACb,UAAU,EAAE,GAAG,CAAC,KAAK;iBACtB,GACD,CACH,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,UAAU,IACT,OAAO,EAAC,SAAS,EACjB,MAAM,QACN,KAAK,EAAE;oBACL,QAAQ,EAAE,EAAE;oBACZ,UAAU,EAAE,GAAG;oBACf,UAAU,EAAE,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM;iBAC3C,IAEA,GAAG,CAAC,KAAK,CACC,CACT,CACP,CAAC,CACE,CACP,CAAC,CAAC,CAAC,IAAI,CACF,CACT,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}
+{"version":3,"file":"AnnotationLegend.js","sourceRoot":"","sources":["../../../src/components/msa/AnnotationLegend.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC7D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAA;AAI5C,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,EAC1C,KAAK,GAGN;IACC,MAAM,EAAE,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IACrD,MAAM,IAAI,GAAG,UAAU,CAAC,OAAO,CAAC,CAAA;IAChC,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,UAAU,CAAA;IAErD,OAAO,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CACvB,oBAAC,KAAK,IACJ,SAAS,EAAE,CAAC,EACZ,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,GAAG,EAAE,CAAC;YACN,KAAK,EAAE,CAAC;YACR,MAAM,EAAE,YAAY;YACpB,QAAQ,EAAE,GAAG;YACb,SAAS,EAAE,KAAK;YAChB,OAAO,EAAE,MAAM;YACf,aAAa,EAAE,QAAQ;YACvB,OAAO,EAAE,IAAI;YACb,aAAa,EAAE,MAAM;SACtB;QAED,oBAAC,UAAU,IACT,IAAI,EAAC,OAAO,EACZ,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,YAAY,EAC/C,KAAK,EAAE;gBACL,OAAO,EAAE,CAAC;gBACV,aAAa,EAAE,MAAM;gBACrB,GAAG,CAAC,QAAQ,IAAI,EAAE,QAAQ,EAAE,UAAU,EAAE,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC;aAC5D,EACD,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,mBAAmB,CAAC,CAAC,QAAQ,CAAC,CAAA;YACtC,CAAC;YAED,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,GAAI,CAC5B;QACZ,QAAQ,CAAC,CAAC,CAAC,CACV,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,IACrD,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,CACpB,6BACE,GAAG,EAAE,GAAG,CAAC,GAAG,EACZ,KAAK,EAAE;gBACL,OAAO,EAAE,MAAM;gBACf,UAAU,EAAE,QAAQ;gBACpB,GAAG,EAAE,CAAC;gBACN,WAAW,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;aAC9B;YAEA,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CACX,6BACE,KAAK,EAAE;oBACL,KAAK,EAAE,CAAC;oBACR,MAAM,EAAE,CAAC;oBACT,UAAU,EAAE,CAAC;oBACb,UAAU,EAAE,GAAG,CAAC,KAAK;iBACtB,GACD,CACH,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,UAAU,IACT,OAAO,EAAC,SAAS,EACjB,MAAM,QACN,KAAK,EACH,GAAG,CAAC,IAAI,IAAI,GAAG,CAAC,IAAI,KAAK,GAAG,CAAC,KAAK;oBAChC,CAAC,CAAC,GAAG,GAAG,CAAC,KAAK,KAAK,GAAG,CAAC,IAAI,GAAG;oBAC9B,CAAC,CAAC,GAAG,CAAC,KAAK,EAEf,KAAK,EAAE;oBACL,QAAQ,EAAE,EAAE;oBACZ,UAAU,EAAE,GAAG;oBACf,UAAU,EAAE,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM;oBAC1C,aAAa,EAAE,MAAM;iBACtB,IAEA,GAAG,CAAC,KAAK,CACC,CACT,CACP,CAAC,CACE,CACP,CAAC,CAAC,CAAC,IAAI,CACF,CACT,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}