react-msaview 8.1.0 → 8.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundle/index.js +104 -117
- package/bundle/index.js.map +4 -4
- package/dist/columnCounts.d.ts +4 -3
- package/dist/columnCounts.js +11 -6
- package/dist/columnCounts.js.map +1 -1
- package/dist/components/CopyButton.d.ts +1 -1
- package/dist/components/CopyButton.js +1 -1
- package/dist/components/CopyButton.js.map +1 -1
- package/dist/components/DragHandle.js +14 -2
- package/dist/components/DragHandle.js.map +1 -1
- package/dist/components/Loading.js +10 -11
- package/dist/components/Loading.js.map +1 -1
- package/dist/components/MSAViewer.d.ts +12 -1
- package/dist/components/MSAViewer.js +12 -1
- package/dist/components/MSAViewer.js.map +1 -1
- package/dist/components/SequenceTextArea.d.ts +11 -0
- package/dist/components/SequenceTextArea.js +40 -8
- package/dist/components/SequenceTextArea.js.map +1 -1
- package/dist/components/StatusMessage.d.ts +12 -0
- package/dist/components/StatusMessage.js +43 -0
- package/dist/components/StatusMessage.js.map +1 -0
- package/dist/components/Track.js +3 -3
- package/dist/components/Track.js.map +1 -1
- package/dist/components/VerticalScrollbar.js +6 -1
- package/dist/components/VerticalScrollbar.js.map +1 -1
- package/dist/components/dialogs/ExportSVGDialog.d.ts +3 -2
- package/dist/components/dialogs/ExportSVGDialog.js +4 -2
- package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
- package/dist/components/dialogs/FeatureDialog.js +15 -10
- package/dist/components/dialogs/FeatureDialog.js.map +1 -1
- package/dist/components/getVisibleLeaves.d.ts +1 -1
- package/dist/components/header/FileMenu.js +9 -0
- package/dist/components/header/FileMenu.js.map +1 -1
- package/dist/components/header/GappynessSlider.js +15 -3
- package/dist/components/header/GappynessSlider.js.map +1 -1
- package/dist/components/header/Header.js +6 -7
- package/dist/components/header/Header.js.map +1 -1
- package/dist/components/header/{HeaderStatusArea.d.ts → RowSearch.d.ts} +2 -2
- package/dist/components/header/RowSearch.js +15 -0
- package/dist/components/header/RowSearch.js.map +1 -0
- package/dist/components/header/revealRow.d.ts +3 -0
- package/dist/components/header/revealRow.js +15 -0
- package/dist/components/header/revealRow.js.map +1 -0
- package/dist/components/header/settingsMenuItems.js +57 -1
- package/dist/components/header/settingsMenuItems.js.map +1 -1
- package/dist/components/import/ImportForm.js +10 -4
- package/dist/components/import/ImportForm.js.map +1 -1
- package/dist/components/import/ImportFormExamples.js +19 -27
- package/dist/components/import/ImportFormExamples.js.map +1 -1
- package/dist/components/minimap/Minimap.js +6 -1
- package/dist/components/minimap/Minimap.js.map +1 -1
- package/dist/components/msa/AnnotationLegend.js +11 -5
- package/dist/components/msa/AnnotationLegend.js.map +1 -1
- package/dist/components/msa/MSACanvas.js +6 -1
- package/dist/components/msa/MSACanvas.js.map +1 -1
- package/dist/components/msa/MSACanvasBlock.js +3 -7
- package/dist/components/msa/MSACanvasBlock.js.map +1 -1
- package/dist/components/msa/msaKeys.d.ts +5 -0
- package/dist/components/msa/msaKeys.js +35 -0
- package/dist/components/msa/msaKeys.js.map +1 -0
- package/dist/components/msa/useMsaBlockMouse.d.ts +2 -4
- package/dist/components/msa/useMsaBlockMouse.js +18 -5
- package/dist/components/msa/useMsaBlockMouse.js.map +1 -1
- package/dist/components/rowpanels/RowPanelBlock.js +10 -14
- package/dist/components/rowpanels/RowPanelBlock.js.map +1 -1
- package/dist/components/tracks/drawTracks.d.ts +1 -0
- package/dist/components/tracks/drawTracks.js +14 -2
- package/dist/components/tracks/drawTracks.js.map +1 -1
- package/dist/components/tracks/useTrackHover.d.ts +1 -5
- package/dist/components/tracks/useTrackHover.js +5 -5
- package/dist/components/tracks/useTrackHover.js.map +1 -1
- package/dist/components/tree/ScaleBarSVG.d.ts +14 -0
- package/dist/components/tree/ScaleBarSVG.js +11 -0
- package/dist/components/tree/ScaleBarSVG.js.map +1 -0
- package/dist/components/tree/TreeCanvas.js +8 -26
- package/dist/components/tree/TreeCanvas.js.map +1 -1
- package/dist/components/tree/TreeCanvasBlock.js +11 -20
- package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
- package/dist/components/tree/{TreeBranchMenu.d.ts → TreeMenu.d.ts} +5 -4
- package/dist/components/tree/TreeMenu.js +48 -0
- package/dist/components/tree/TreeMenu.js.map +1 -0
- package/dist/components/tree/TreeRuler.js +3 -3
- package/dist/components/tree/TreeRuler.js.map +1 -1
- package/dist/components/tree/renderTreeCanvas.js +19 -9
- package/dist/components/tree/renderTreeCanvas.js.map +1 -1
- package/dist/components/tree/renderTreeMouseover.d.ts +5 -0
- package/dist/components/tree/renderTreeMouseover.js +20 -0
- package/dist/components/tree/renderTreeMouseover.js.map +1 -0
- package/dist/components/tree/useTreeHover.d.ts +3 -8
- package/dist/components/tree/useTreeHover.js +8 -10
- package/dist/components/tree/useTreeHover.js.map +1 -1
- package/dist/components/useHoverAnchor.d.ts +19 -0
- package/dist/components/useHoverAnchor.js +18 -0
- package/dist/components/useHoverAnchor.js.map +1 -0
- package/dist/constants.d.ts +4 -1
- package/dist/constants.js +12 -3
- package/dist/constants.js.map +1 -1
- package/dist/expandSpec.d.ts +46 -0
- package/dist/expandSpec.js +127 -0
- package/dist/expandSpec.js.map +1 -0
- package/dist/exportFileName.d.ts +3 -3
- package/dist/exportFileName.js +4 -4
- package/dist/exportFileName.js.map +1 -1
- package/dist/hierarchy.d.ts +51 -0
- package/dist/hierarchy.js +125 -0
- package/dist/hierarchy.js.map +1 -1
- package/dist/index.d.ts +4 -2
- package/dist/index.js +2 -0
- package/dist/index.js.map +1 -1
- package/dist/model/treeModel.d.ts +12 -0
- package/dist/model/treeModel.js +14 -1
- package/dist/model/treeModel.js.map +1 -1
- package/dist/model.d.ts +188 -47
- package/dist/model.js +482 -192
- package/dist/model.js.map +1 -1
- package/dist/renderToSvg.js +2 -4
- package/dist/renderToSvg.js.map +1 -1
- package/dist/rerootTree.d.ts +33 -0
- package/dist/rerootTree.js +144 -0
- package/dist/rerootTree.js.map +1 -0
- package/dist/svgTestUtil.d.ts +114 -20
- package/dist/types.d.ts +25 -12
- package/dist/useMsaSvgFigure.d.ts +2 -1
- package/dist/useMsaSvgFigure.js +11 -4
- package/dist/useMsaSvgFigure.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/writeNewick.d.ts +8 -0
- package/dist/writeNewick.js +34 -0
- package/dist/writeNewick.js.map +1 -0
- package/package.json +3 -3
- package/src/columnCounts.ts +14 -6
- package/src/components/CopyButton.tsx +2 -2
- package/src/components/DragHandle.tsx +21 -1
- package/src/components/Loading.tsx +14 -30
- package/src/components/MSAViewer.tsx +26 -0
- package/src/components/SequenceTextArea.tsx +54 -8
- package/src/components/StatusMessage.tsx +70 -0
- package/src/components/Track.tsx +8 -4
- package/src/components/VerticalScrollbar.tsx +7 -0
- package/src/components/dialogs/ExportSVGDialog.tsx +5 -2
- package/src/components/dialogs/FeatureDialog.tsx +59 -38
- package/src/components/header/FileMenu.tsx +9 -0
- package/src/components/header/GappynessSlider.tsx +17 -4
- package/src/components/header/Header.tsx +7 -8
- package/src/components/header/RowSearch.tsx +34 -0
- package/src/components/header/revealRow.ts +17 -0
- package/src/components/header/settingsMenuItems.ts +66 -0
- package/src/components/import/ImportForm.tsx +14 -7
- package/src/components/import/ImportFormExamples.tsx +20 -28
- package/src/components/minimap/Minimap.tsx +7 -0
- package/src/components/msa/AnnotationLegend.tsx +12 -6
- package/src/components/msa/MSACanvas.tsx +8 -0
- package/src/components/msa/MSACanvasBlock.tsx +5 -11
- package/src/components/msa/msaKeys.ts +39 -0
- package/src/components/msa/useMsaBlockMouse.ts +23 -7
- package/src/components/rowpanels/RowPanelBlock.tsx +16 -23
- package/src/components/tracks/drawTracks.ts +15 -2
- package/src/components/tracks/useTrackHover.ts +5 -5
- package/src/components/tree/ScaleBarSVG.tsx +30 -0
- package/src/components/tree/TreeCanvas.tsx +9 -40
- package/src/components/tree/TreeCanvasBlock.tsx +19 -39
- package/src/components/tree/TreeMenu.tsx +129 -0
- package/src/components/tree/TreeRuler.tsx +7 -13
- package/src/components/tree/renderTreeCanvas.ts +20 -8
- package/src/components/tree/renderTreeMouseover.ts +41 -0
- package/src/components/tree/useTreeHover.ts +8 -17
- package/src/components/useHoverAnchor.ts +31 -0
- package/src/constants.ts +14 -3
- package/src/expandSpec.ts +196 -0
- package/src/exportFileName.ts +4 -3
- package/src/hierarchy.ts +151 -4
- package/src/index.ts +11 -1
- package/src/model/treeModel.ts +22 -0
- package/src/model.ts +588 -221
- package/src/renderToSvg.tsx +6 -9
- package/src/rerootTree.ts +172 -0
- package/src/types.ts +34 -12
- package/src/useMsaSvgFigure.ts +11 -4
- package/src/version.ts +1 -1
- package/src/writeNewick.ts +38 -0
- package/dist/components/PortalTooltip.d.ts +0 -11
- package/dist/components/PortalTooltip.js +0 -29
- package/dist/components/PortalTooltip.js.map +0 -1
- package/dist/components/header/HeaderStatusArea.js +0 -21
- package/dist/components/header/HeaderStatusArea.js.map +0 -1
- package/dist/components/tree/TreeBranchMenu.js +0 -29
- package/dist/components/tree/TreeBranchMenu.js.map +0 -1
- package/dist/components/tree/TreeNodeMenu.d.ts +0 -13
- package/dist/components/tree/TreeNodeMenu.js +0 -41
- package/dist/components/tree/TreeNodeMenu.js.map +0 -1
- package/src/components/PortalTooltip.tsx +0 -47
- package/src/components/header/HeaderStatusArea.tsx +0 -32
- package/src/components/tree/TreeBranchMenu.tsx +0 -68
- package/src/components/tree/TreeNodeMenu.tsx +0 -95
package/src/model/treeModel.ts
CHANGED
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@@ -8,12 +8,16 @@ import {
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defaultLabelsAlignRight,
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defaultOverviewHeight,
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defaultShowBranchLen,
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defaultTreeOrder,
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defaultShowTreeOverview,
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defaultTreeAreaWidth,
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defaultTreeWidth,
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treeOrders,
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} from '../constants.ts'
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import { stripDefault } from '../stripDefault.ts'
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import type { TreeOrder } from '../types.ts'
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/**
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* #stateModel Tree
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*/
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@@ -51,6 +55,17 @@ export function TreeModelF() {
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*/
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showBranchLen: stripDefault(types.boolean, defaultShowBranchLen),
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/**
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* #property
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* the order each node's children draw in: `branchLength` (shortest
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* first), `input` (as the file gives them), `ladderize` (fewest tips
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* first) or `ladderizeReverse` (most tips first)
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*/
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treeOrder: stripDefault(
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types.enumeration<TreeOrder>('TreeOrder', [...treeOrders]),
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defaultTreeOrder,
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),
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/**
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* #property
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* draw tree, boolean
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@@ -133,6 +148,13 @@ export function TreeModelF() {
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self.showBranchLen = arg
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},
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/**
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* #action
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*/
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setTreeOrder(order: TreeOrder) {
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self.treeOrder = order
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},
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/**
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* #action
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*/
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