react-msaview 7.0.0 → 8.0.0

package/dist/model/msaModel.d.ts

@@ -15,8 +15,9 @@ export declare function MSAModelF(): import("@jbrowse/mobx-state-tree").IModelTy
     colorSchemeName: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
     /**
      * #property
-     * show a per-column statistics tooltip (consensus, conservation, gaps,
-     * residue distribution) while hovering the alignment
+     * show a tooltip with the hovered column's value for a track while
+     * hovering that track: the conservation scores, the logo's composition,
+     * an arc's partner columns
      */
     showColumnStats: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     /**

package/dist/model/msaModel.js

@@ -20,8 +20,9 @@ export function MSAModelF() {
         colorSchemeName: stripDefault(types.string, defaultColorSchemeName),
         /**
          * #property
-         * show a per-column statistics tooltip (consensus, conservation, gaps,
-         * residue distribution) while hovering the alignment
+         * show a tooltip with the hovered column's value for a track while
+         * hovering that track: the conservation scores, the logo's composition,
+         * an arc's partner columns
          */
         showColumnStats: stripDefault(types.boolean, defaultShowColumnStats),
         /**

package/dist/model/msaModel.js.map

@@ -1 +1 @@
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+{"version":3,"file":"msaModel.js","sourceRoot":"","sources":["../../src/model/msaModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhD,OAAO,EACL,cAAc,EACd,sBAAsB,EACtB,sBAAsB,GACvB,MAAM,iBAAiB,CAAA;AACxB,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAA;AAIjD,MAAM,UAAU,GAAgB,CAAC,WAAW,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,SAAS,CAAC,CAAA;AAE/E;;GAEG;AACH,MAAM,UAAU,SAAS;IACvB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;;WAGG;QACH,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,OAAO,EAAE,cAAc,CAAC;QAEpD;;;WAGG;QACH,eAAe,EAAE,YAAY,CAAC,KAAK,CAAC,MAAM,EAAE,sBAAsB,CAAC;QAEnE;;;;;WAKG;QACH,eAAe,EAAE,YAAY,CAAC,KAAK,CAAC,OAAO,EAAE,sBAAsB,CAAC;QAEpE;;;;WAIG;QACH,SAAS,EAAE,KAAK,CAAC,KAAK,CACpB,KAAK,CAAC,WAAW,CAAY,WAAW,EAAE,UAAU,CAAC,CACtD;KACF,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;;WAGG;QACH,kBAAkB,CAAC,IAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,IAAI,CAAA;QAC7B,CAAC;QAED;;WAEG;QACH,UAAU,CAAC,GAAY;YACrB,IAAI,CAAC,OAAO,GAAG,GAAG,CAAA;QACpB,CAAC;QAED;;WAEG;QACH,kBAAkB,CAAC,GAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,GAAG,CAAA;QAC5B,CAAC;QAED;;;WAGG;QACH,YAAY,CAAC,GAAe;YAC1B,IAAI,CAAC,SAAS,GAAG,GAAG,CAAA;QACtB,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}

package/dist/model/treeModel.d.ts

@@ -39,6 +39,23 @@ export declare function TreeModelF(): import("@jbrowse/mobx-state-tree").IModelT
      * draw node bubbles on the tree; the branches stay clickable either way
      */
     drawNodeBubbles: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+    /**
+     * #property
+     * draw the label a newick file gives an internal node, which is where a
+     * bootstrap or posterior support value lands
+     */
+    drawNodeLabels: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+    /**
+     * #property
+     * draw the whole tree small above the tree panel, with the focused
+     * subtree boxed. A click on it focuses the subtree under the pointer
+     */
+    showTreeOverview: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+    /**
+     * #property
+     * height of the tree overview band, px
+     */
+    overviewHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
     /**
      * #property
      * auto-size treeAreaWidth to fit the row labels (plus the tree, if drawn)
@@ -77,6 +94,19 @@ export declare function TreeModelF(): import("@jbrowse/mobx-state-tree").IModelT
      * #action
      */
     setDrawNodeBubbles(arg: boolean): void;
+    /**
+     * #action
+     */
+    setDrawNodeLabels(arg: boolean): void;
+    /**
+     * #action
+     */
+    setShowTreeOverview(arg: boolean): void;
+    /**
+     * #action
+     * set the height of the tree overview band (px)
+     */
+    setOverviewHeight(n: number): void;
     /**
      * #action
      */

package/dist/model/treeModel.js

@@ -1,5 +1,5 @@
 import { types } from '@jbrowse/mobx-state-tree';
-import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawTree, defaultLabelsAlignRight, defaultShowBranchLen, defaultTreeAreaWidth, defaultTreeWidth, } from '../constants.js';
+import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawNodeLabels, defaultDrawTree, defaultLabelsAlignRight, defaultOverviewHeight, defaultShowBranchLen, defaultShowTreeOverview, defaultTreeAreaWidth, defaultTreeWidth, } from '../constants.js';
 import { stripDefault } from '../stripDefault.js';
 /**
  * #stateModel Tree
@@ -44,6 +44,23 @@ export function TreeModelF() {
          * draw node bubbles on the tree; the branches stay clickable either way
          */
         drawNodeBubbles: stripDefault(types.boolean, defaultDrawNodeBubbles),
+        /**
+         * #property
+         * draw the label a newick file gives an internal node, which is where a
+         * bootstrap or posterior support value lands
+         */
+        drawNodeLabels: stripDefault(types.boolean, defaultDrawNodeLabels),
+        /**
+         * #property
+         * draw the whole tree small above the tree panel, with the focused
+         * subtree boxed. A click on it focuses the subtree under the pointer
+         */
+        showTreeOverview: stripDefault(types.boolean, defaultShowTreeOverview),
+        /**
+         * #property
+         * height of the tree overview band, px
+         */
+        overviewHeight: stripDefault(types.number, defaultOverviewHeight),
         /**
          * #property
          * auto-size treeAreaWidth to fit the row labels (plus the tree, if drawn)
@@ -97,6 +114,25 @@ export function TreeModelF() {
         setDrawNodeBubbles(arg) {
             self.drawNodeBubbles = arg;
         },
+        /**
+         * #action
+         */
+        setDrawNodeLabels(arg) {
+            self.drawNodeLabels = arg;
+        },
+        /**
+         * #action
+         */
+        setShowTreeOverview(arg) {
+            self.showTreeOverview = arg;
+        },
+        /**
+         * #action
+         * set the height of the tree overview band (px)
+         */
+        setOverviewHeight(n) {
+            self.overviewHeight = Math.round(n);
+        },
         /**
          * #action
          */

package/dist/model/treeModel.js.map

@@ -1 +1 @@
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