react-msaview 6.5.0 → 8.0.0

package/dist/components/MSAViewer.js.map

@@ -1 +1 @@
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package/dist/components/PortalTooltip.d.ts

@@ -0,0 +1,11 @@
+import React from 'react';
+/**
+ * A tooltip beside the pointer, portaled to the body. A panel's scroll
+ * transform is a containing block, so a fixed tooltip left inside it would
+ * position against the scrolled content instead of the window.
+ */
+export default function PortalTooltip({ clientX, clientY, children, }: {
+    clientX: number;
+    clientY: number;
+    children: React.ReactNode;
+}): React.ReactPortal;

package/dist/components/PortalTooltip.js

@@ -0,0 +1,29 @@
+import React from 'react';
+import { makeStyles } from '@jbrowse/core/util/tss-react';
+import { createPortal } from 'react-dom';
+const useStyles = makeStyles()(theme => ({
+    tooltip: {
+        position: 'fixed',
+        pointerEvents: 'none',
+        zIndex: 10000,
+        backgroundColor: theme.palette.grey[700],
+        color: theme.palette.common.white,
+        padding: '4px 8px',
+        borderRadius: 4,
+        fontSize: 12,
+        whiteSpace: 'nowrap',
+        maxWidth: 300,
+        overflow: 'hidden',
+        textOverflow: 'ellipsis',
+    },
+}));
+/**
+ * A tooltip beside the pointer, portaled to the body. A panel's scroll
+ * transform is a containing block, so a fixed tooltip left inside it would
+ * position against the scrolled content instead of the window.
+ */
+export default function PortalTooltip({ clientX, clientY, children, }) {
+    const { classes } = useStyles();
+    return createPortal(React.createElement("div", { className: classes.tooltip, style: { left: clientX + 12, top: clientY + 12 } }, children), document.body);
+}
+//# sourceMappingURL=PortalTooltip.js.map

package/dist/components/PortalTooltip.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"PortalTooltip.js","sourceRoot":"","sources":["../../src/components/PortalTooltip.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,YAAY,EAAE,MAAM,WAAW,CAAA;AAExC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,QAAQ,EAAE,OAAO;QACjB,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,KAAK;QACb,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;QACxC,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK;QACjC,OAAO,EAAE,SAAS;QAClB,YAAY,EAAE,CAAC;QACf,QAAQ,EAAE,EAAE;QACZ,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,GAAG;QACb,QAAQ,EAAE,QAAQ;QAClB,YAAY,EAAE,UAAU;KACzB;CACF,CAAC,CAAC,CAAA;AAEH;;;;GAIG;AACH,MAAM,CAAC,OAAO,UAAU,aAAa,CAAC,EACpC,OAAO,EACP,OAAO,EACP,QAAQ,GAKT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,YAAY,CACjB,6BACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE,EAAE,IAAI,EAAE,OAAO,GAAG,EAAE,EAAE,GAAG,EAAE,OAAO,GAAG,EAAE,EAAE,IAE/C,QAAQ,CACL,EACN,QAAQ,CAAC,IAAI,CACd,CAAA;AACH,CAAC"}

package/dist/components/ResizeHandles.d.ts

@@ -1,13 +1,13 @@
 import React from 'react';
 import type { MsaViewModel } from '../model.ts';
-import type { TrackKind } from '../types.ts';
+import type { BasicTrack } from '../types.ts';
 export declare const VerticalResizeHandle: ({ model, }: {
     model: MsaViewModel;
 }) => React.JSX.Element;
 export declare const HorizontalResizeHandle: ({ model, }: {
     model: MsaViewModel;
 }) => React.JSX.Element;
-export declare const TrackResizeHandle: ({ model, kind, }: {
+export declare const TrackResizeHandle: ({ model, track, }: {
     model: MsaViewModel;
-    kind: TrackKind;
+    track: BasicTrack;
 }) => React.JSX.Element | null;

package/dist/components/ResizeHandles.js

@@ -13,31 +13,20 @@ export const HorizontalResizeHandle = observer(function ({ model, }) {
     }, [model]);
     return (React.createElement(DragHandle, { axis: "y", variant: "resizer", getStart: () => model.height, onDrag: onDrag, style: { width: '100%', height: model.resizeHandleWidth } }));
 });
-// The height behind each resizable track kind. Both bar tracks read one height
-// so conservation and property conservation stay directly comparable; the logo
-// keeps its own, being taller by default. Text tracks are absent: they are one
-// alignment row tall and follow rowHeight, so the zoom controls already size
-// them.
-const trackHeights = {
-    bar: {
-        get: model => model.conservationTrackHeight,
-        set: (model, height) => {
-            model.setConservationTrackHeight(height);
-        },
-    },
-    logo: {
-        get: model => model.sequenceLogoTrackHeight,
-        set: (model, height) => {
-            model.setSequenceLogoTrackHeight(height);
-        },
-    },
-};
-export const TrackResizeHandle = observer(function ({ model, kind, }) {
-    const height = trackHeights[kind];
+export const TrackResizeHandle = observer(function ({ model, track, }) {
+    const { id, heightKey, height } = track.model;
+    // tracks sharing a key resize together, so only the last turned-on one of
+    // them carries the divider: a second between conservation and property
+    // conservation would move the pair this one already moves. The drag divides
+    // across the group, so its bottom edge follows the cursor rather than half
+    const siblings = model.turnedOnTracks.filter(t => t.model.heightKey === heightKey);
+    const count = siblings.length;
     const onDrag = useCallback((delta, startHeight) => {
-        height?.set(model, Math.max(10, startHeight + delta));
-    }, [model, height]);
-    return height ? (React.createElement(DragHandle, { axis: "y", variant: "resizer", getStart: () => height.get(model), onDrag: onDrag, style: {
+        if (heightKey) {
+            model.setTrackHeight(heightKey, Math.max(10, startHeight + delta / count));
+        }
+    }, [model, heightKey, count]);
+    return heightKey && siblings.at(-1)?.model.id === id ? (React.createElement(DragHandle, { axis: "y", variant: "resizer", getStart: () => height, onDrag: onDrag, style: {
             position: 'absolute',
             bottom: 0,
             left: 0,

package/dist/components/ResizeHandles.js.map

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package/dist/components/SequenceTextArea.js

@@ -4,17 +4,17 @@ import { TextField } from '@mui/material';
 import { getUngappedSequence } from 'msa-parsers';
 import Checkbox2 from './Checkbox2.js';
 import CopyButton from './CopyButton.js';
-const useStyles = makeStyles()({
+const useStyles = makeStyles()(theme => ({
     textAreaFont: {
         fontFamily: 'Courier New',
         wordWrap: 'break-word',
     },
     dialogContent: {
-        background: 'lightgrey',
+        background: theme.palette.action.selected,
         margin: 4,
         minWidth: '80em',
     },
-});
+}));
 export default function SequenceTextArea({ str }) {
     const { classes } = useStyles();
     const [showGaps, setShowGaps] = useState(false);

package/dist/components/SequenceTextArea.js.map

@@ -1 +1 @@
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+{"version":3,"file":"SequenceTextArea.js","sourceRoot":"","sources":["../../src/components/SequenceTextArea.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AACzC,OAAO,EAAE,mBAAmB,EAAE,MAAM,aAAa,CAAA;AAEjD,OAAO,SAAS,MAAM,gBAAiB,CAAA;AACvC,OAAO,UAAU,MAAM,iBAAkB,CAAA;AAEzC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,YAAY,EAAE;QACZ,UAAU,EAAE,aAAa;QACzB,QAAQ,EAAE,YAAY;KACvB;IACD,aAAa,EAAE;QACb,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ;QACzC,MAAM,EAAE,CAAC;QACT,QAAQ,EAAE,MAAM;KACjB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,CAAC,OAAO,UAAU,gBAAgB,CAAC,EAAE,GAAG,EAA+B;IAC3E,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAC/C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAEjD,MAAM,IAAI,GAAG,GAAG;SACb,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,mBAAmB,CAAC,EAAE,CAAC,CAAU,CAAC;SACzE,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,SAAS,IAAI,CAAC,CAAC,EAAE,CAAC;SACrC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;SAClC,IAAI,CAAC,IAAI,CAAC,CAAA;IACb,OAAO,CACL;QACE,oBAAC,UAAU,IAAC,IAAI,EAAE,IAAI,GAAI;QAC1B,oBAAC,SAAS,IACR,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,QAAQ,EACjB,QAAQ,EAAE,GAAG,EAAE;gBACb,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;YACxB,CAAC,GACD;QACF,oBAAC,SAAS,IACR,KAAK,EAAC,YAAY,EAClB,OAAO,EAAE,SAAS,EAClB,QAAQ,EAAE,GAAG,EAAE;gBACb,YAAY,CAAC,CAAC,SAAS,CAAC,CAAA;YAC1B,CAAC,GACD;QACF,oBAAC,SAAS,IACR,OAAO,EAAC,UAAU,EAClB,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,aAAa,EAChC,OAAO,EAAE,CAAC,EACV,OAAO,EAAE,EAAE,EACX,SAAS,QACT,KAAK,EAAE,IAAI,EACX,SAAS,EAAE;gBACT,KAAK,EAAE;oBACL,QAAQ,EAAE,IAAI;oBACd,SAAS,EAAE,OAAO,CAAC,YAAY;iBAChC;aACF,GACD,CACD,CACJ,CAAA;AACH,CAAC"}

package/dist/components/Track.js

@@ -1,15 +1,29 @@
 import React, { lazy, useCallback, useRef, useState } from 'react';
+import BaseTooltip from '@jbrowse/core/ui/BaseTooltip';
 import { makeStyles } from '@jbrowse/core/util/tss-react';
 import ArrowDropDownIcon from '@mui/icons-material/ArrowDropDown';
 import { IconButton, Menu, MenuItem } from '@mui/material';
 import { observer } from 'mobx-react';
 import { useWheelScroll } from '../useWheelScroll.js';
+import TrackTooltipContent from './tracks/TrackTooltipContent.js';
+import { useTrackHover } from './tracks/useTrackHover.js';
 const TrackInfoDialog = lazy(() => import('./dialogs/TrackInfoDialog.js'));
-const useStyles = makeStyles()({
+const useStyles = makeStyles()(theme => ({
     button: {
         padding: 0,
     },
-});
+    // a hairline under every track but the last, across the labels as well as
+    // the alignment. The divider a track's resize handle draws covers only the
+    // alignment, and tracks sharing a height have no handle between them. Inset,
+    // so the line costs no layout height: totalTrackAreaHeight sums the model's
+    // heights, and the column indicator is drawn against that sum
+    row: {
+        display: 'flex',
+        '&:not(:last-child)': {
+            boxShadow: `inset 0 -1px 0 ${theme.palette.divider}`,
+        },
+    },
+}));
 const TrackLabel = observer(function TrackLabel({ model, track, }) {
     const [anchorEl, setAnchorEl] = useState();
     const closeMenu = () => {
@@ -23,14 +37,21 @@ const TrackLabel = observer(function TrackLabel({ model, track, }) {
             width,
             height,
             flexShrink: 0,
-            textAlign: 'right',
+            display: 'flex',
+            alignItems: 'flex-start',
+            justifyContent: 'flex-end',
+            gap: 2,
             fontSize: trackLabelHeight,
         } },
-        drawLabels ? name : '',
-        ' ',
+        React.createElement("span", { title: name, style: {
+                overflow: 'hidden',
+                textOverflow: 'ellipsis',
+                whiteSpace: 'nowrap',
+            } }, drawLabels ? name : ''),
         React.createElement(IconButton, { className: classes.button, style: {
                 width: trackLabelHeight,
                 height: trackLabelHeight,
+                flexShrink: 0,
             }, onClick: event => {
                 setAnchorEl(event.currentTarget);
             } },
@@ -51,33 +72,31 @@ const TrackLabel = observer(function TrackLabel({ model, track, }) {
                 } }, "Get info"))) : null));
 });
 const Track = observer(function ({ model, track, }) {
-    const { resizeHandleWidth, colWidth, scrollX, numColumns } = model;
+    const { resizeHandleWidth, rowPanelsWidth, showColumnStats } = model;
     const { model: { height }, } = track;
     const ref = useRef(null);
     const onScrollX = useCallback((d) => {
         model.doScrollX(d);
     }, [model]);
     useWheelScroll({ ref, onScrollX });
-    return (React.createElement("div", { style: { display: 'flex', height } },
+    const { classes } = useStyles();
+    const { hover, onMouseMove, onMouseLeave } = useTrackHover({
+        model,
+        tooltip: showColumnStats,
+    });
+    return (React.createElement("div", { className: classes.row, style: { height } },
         React.createElement(TrackLabel, { model: model, track: track }),
-        React.createElement("div", { style: { width: resizeHandleWidth, flexShrink: 0 } }),
-        React.createElement("div", { ref: ref, onMouseMove: event => {
-                if (!ref.current) {
-                    return;
-                }
-                const { left } = ref.current.getBoundingClientRect();
-                const mouseX = event.clientX - left - scrollX;
-                const col = Math.floor(mouseX / colWidth);
-                if (col >= 0 && col < numColumns) {
-                    model.setMousePos(col, undefined);
-                }
-                else {
-                    model.setMousePos(undefined, undefined);
+        React.createElement("div", { style: { width: rowPanelsWidth + resizeHandleWidth, flexShrink: 0 } }),
+        React.createElement("div", { ref: ref, "data-testid": `track_${track.model.id}`, onMouseMove: event => {
+                if (ref.current) {
+                    onMouseMove(event, ref.current);
                 }
             }, onMouseLeave: () => {
-                model.setMousePos(undefined, undefined);
+                onMouseLeave();
             } },
-            React.createElement(track.ReactComponent, { model: model, track: track }))));
+            React.createElement(track.ReactComponent, { model: model, track: track }),
+            hover ? (React.createElement(BaseTooltip, { clientPoint: { x: hover.x, y: hover.y + 15 } },
+                React.createElement(TrackTooltipContent, { model: model, track: track, col: hover.col }))) : null)));
 });
 export default Track;
 //# sourceMappingURL=Track.js.map

package/dist/components/Track.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Track.js","sourceRoot":"","sources":["../../src/components/Track.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAElE,OAAO,WAAW,MAAM,8BAA8B,CAAA;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,iBAAiB,MAAM,mCAAmC,CAAA;AACjE,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAA;AACrD,OAAO,mBAAmB,MAAM,iCAAkC,CAAA;AAClE,OAAO,EAAE,aAAa,EAAE,MAAM,2BAA2B,CAAA;AAKzD,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,8BAA+B,CAAC,CAAC,CAAA;AAE3E,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,MAAM,EAAE;QACN,OAAO,EAAE,CAAC;KACX;IACD,0EAA0E;IAC1E,2EAA2E;IAC3E,6EAA6E;IAC7E,4EAA4E;IAC5E,8DAA8D;IAC9D,GAAG,EAAE;QACH,OAAO,EAAE,MAAM;QACf,oBAAoB,EAAE;YACpB,SAAS,EAAE,kBAAkB,KAAK,CAAC,OAAO,CAAC,OAAO,EAAE;SACrD;KACF;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,UAAU,GAAG,QAAQ,CAAC,SAAS,UAAU,CAAC,EAC9C,KAAK,EACL,KAAK,GAIN;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAqB,CAAA;IAC7D,MAAM,SAAS,GAAG,GAAG,EAAE;QACrB,WAAW,CAAC,SAAS,CAAC,CAAA;IACxB,CAAC,CAAA;IACD,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,aAAa,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAC5D,MAAM,EACJ,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,GACxB,GAAG,KAAK,CAAA;IACT,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,gBAAgB,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;IAEnD,OAAO,CAIL,6BACE,KAAK,EAAE;YACL,KAAK;YACL,MAAM;YACN,UAAU,EAAE,CAAC;YACb,OAAO,EAAE,MAAM;YACf,UAAU,EAAE,YAAY;YACxB,cAAc,EAAE,UAAU;YAC1B,GAAG,EAAE,CAAC;YACN,QAAQ,EAAE,gBAAgB;SAC3B;QAED,8BACE,KAAK,EAAE,IAAI,EACX,KAAK,EAAE;gBACL,QAAQ,EAAE,QAAQ;gBAClB,YAAY,EAAE,UAAU;gBACxB,UAAU,EAAE,QAAQ;aACrB,IAEA,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAClB;QACP,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE;gBACL,KAAK,EAAE,gBAAgB;gBACvB,MAAM,EAAE,gBAAgB;gBACxB,UAAU,EAAE,CAAC;aACd,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC,CAAA;YAClC,CAAC;YAED,oBAAC,iBAAiB,OAAG,CACV;QACZ,QAAQ,CAAC,CAAC,CAAC,CACV,oBAAC,IAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,kBAAkB,EAAE,CAAC,EACrB,IAAI,QACJ,OAAO,EAAE,GAAG,EAAE;gBACZ,SAAS,EAAE,CAAA;YACb,CAAC;YAED,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;oBACjC,SAAS,EAAE,CAAA;gBACb,CAAC,YAGQ;YACX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE;qBAChC,CAAC,CAAA;oBACF,SAAS,EAAE,CAAA;gBACb,CAAC,eAGQ,CACN,CACR,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,EAC/B,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,iBAAiB,EAAE,cAAc,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACpE,MAAM,EACJ,KAAK,EAAE,EAAE,MAAM,EAAE,GAClB,GAAG,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,cAAc,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,CAAA;IAClC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC;QACzD,KAAK;QACL,OAAO,EAAE,eAAe;KACzB,CAAC,CAAA;IAEF,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,GAAG,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE;QAC5C,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI;QAG1C,6BACE,KAAK,EAAE,EAAE,KAAK,EAAE,cAAc,GAAG,iBAAiB,EAAE,UAAU,EAAE,CAAC,EAAE,GACnE;QACF,6BACE,GAAG,EAAE,GAAG,iBACK,SAAS,KAAK,CAAC,KAAK,CAAC,EAAE,EAAE,EACtC,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;oBAChB,WAAW,CAAC,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,CAAA;gBACjC,CAAC;YACH,CAAC,EACD,YAAY,EAAE,GAAG,EAAE;gBACjB,YAAY,EAAE,CAAA;YAChB,CAAC;YAED,oBAAC,KAAK,CAAC,cAAc,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI;YACnD,KAAK,CAAC,CAAC,CAAC,CACP,oBAAC,WAAW,IAAC,WAAW,EAAE,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC,GAAG,EAAE,EAAE;gBACvD,oBAAC,mBAAmB,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,GAAI,CACvD,CACf,CAAC,CAAC,CAAC,IAAI,CACJ,CACF,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,KAAK,CAAA"}

package/dist/components/dialogs/{InterProScanDialog.d.ts → AnnotationFileDialog.d.ts}

@@ -1,7 +1,7 @@
 import React from 'react';
 import type { MsaViewModel } from '../../model.ts';
-declare const InterProScanDialog: ({ handleClose, model, }: {
+declare const AnnotationFileDialog: ({ handleClose, model, }: {
     handleClose: () => void;
     model: MsaViewModel;
 }) => React.JSX.Element;
-export default InterProScanDialog;
+export default AnnotationFileDialog;

package/dist/components/dialogs/AnnotationFileDialog.js

@@ -0,0 +1,92 @@
+import React, { useState } from 'react';
+import { Dialog, ErrorMessage } from '@jbrowse/core/ui';
+import { Button, DialogActions, DialogContent, FormControl, FormControlLabel, Radio, RadioGroup, TextField, Typography, } from '@mui/material';
+import { observer } from 'mobx-react';
+import { annotationsToGFF, interProScanResponseToAnnotations, } from 'msa-parsers';
+// GFF3 as the CLI writes it, or the JSON an InterProScan run returns. Both
+// arrive as text and the model keeps GFF, so the JSON is converted on the way
+// in rather than given a second path through the model
+function toGFF(text) {
+    const trimmed = text.trimStart();
+    if (!trimmed.startsWith('{')) {
+        return text;
+    }
+    const response = JSON.parse(trimmed);
+    return annotationsToGFF(interProScanResponseToAnnotations(response));
+}
+async function fetchText(url) {
+    const response = await fetch(url);
+    if (!response.ok) {
+        throw new Error(`HTTP ${response.status} fetching ${url} ${await response.text()}`);
+    }
+    return response.text();
+}
+const AnnotationFileDialog = observer(function ({ handleClose, model, }) {
+    const [file, setFile] = useState();
+    const [choice, setChoice] = useState('file');
+    const [url, setUrl] = useState('');
+    const [error, setError] = useState();
+    const [loading, setLoading] = useState(false);
+    // the error is shown here rather than notified: the standalone app and the
+    // MSAViewer component have no jbrowse session to notify, and asking one for
+    // its notify() threw out of the success path into the catch, which threw
+    // again on the same missing session
+    return (React.createElement(Dialog, { maxWidth: "xl", title: "Open annotation file", onClose: () => {
+            handleClose();
+        }, open: true },
+        React.createElement(DialogContent, null,
+            error ? React.createElement(ErrorMessage, { error: error }) : null,
+            React.createElement(Typography, null, "Open a GFF3 file of annotations, such as the one `react-msaview-cli interpro` writes, or the JSON an InterProScan run returns."),
+            React.createElement("div", { style: { display: 'flex', margin: 30 } },
+                React.createElement(FormControl, { component: "fieldset" },
+                    React.createElement(RadioGroup, { value: choice, onChange: event => {
+                            setChoice(event.target.value);
+                        } },
+                        React.createElement(FormControlLabel, { value: "url", control: React.createElement(Radio, null), label: "URL" }),
+                        React.createElement(FormControlLabel, { value: "file", control: React.createElement(Radio, null), label: "File" }))),
+                choice === 'url' ? (React.createElement("div", null,
+                    React.createElement(Typography, null, "Open an annotation file from a URL"),
+                    React.createElement(TextField, { label: "URL", value: url, onChange: event => {
+                            setUrl(event.target.value);
+                        } }))) : (React.createElement("div", { style: { paddingTop: 20 } },
+                    React.createElement(Typography, null, "Open an annotation file from your local drive"),
+                    React.createElement(Button, { variant: "outlined", component: "label" },
+                        "Choose File",
+                        React.createElement("input", { type: "file", hidden: true, onChange: ({ target }) => {
+                                const chosen = target.files?.[0];
+                                if (chosen) {
+                                    setFile(chosen);
+                                }
+                            } })),
+                    file ? React.createElement(Typography, null, file.name) : null)))),
+        React.createElement(DialogActions, null,
+            React.createElement(Button, { variant: "contained", color: "primary", disabled: loading, onClick: () => {
+                    // eslint-disable-next-line @typescript-eslint/no-floating-promises
+                    ;
+                    (async () => {
+                        setLoading(true);
+                        setError(undefined);
+                        try {
+                            const text = await (choice === 'file' && file
+                                ? file.text()
+                                : fetchText(url));
+                            // through the model's own GFF text, so the annotations travel
+                            // in the snapshot and the shared URL like every other layer.
+                            // Setting them straight onto the volatile left a view whose
+                            // link opened without them
+                            model.setGFF(toGFF(text));
+                            model.setShowDomains(true);
+                            handleClose();
+                        }
+                        catch (e) {
+                            console.error(e);
+                            setError(e);
+                        }
+                        finally {
+                            setLoading(false);
+                        }
+                    })();
+                } }, "Open annotations"))));
+});
+export default AnnotationFileDialog;
+//# sourceMappingURL=AnnotationFileDialog.js.map

package/dist/components/dialogs/AnnotationFileDialog.js.map

@@ -0,0 +1 @@
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package/dist/components/dialogs/ExportSVGDialog.js

@@ -18,10 +18,12 @@ export default function ExportSVGDialog({ model, onClose, }) {
     const [error, setError] = useState();
     const [exporting, setExporting] = useState(false);
     const theme = useTheme();
-    const { totalWidth, totalHeight, treeAreaWidth, turnedOnTracks, totalTrackAreaHeight, numColumns, leaves, showMsaLetters, } = model;
+    const { totalWidth, totalHeight, treeAreaWidth, rowPanelsWidth, turnedOnTracks, totalTrackAreaHeight, numColumns, leaves, showMsaLetters, treeOverviewHeight, } = model;
     const hasTracks = turnedOnTracks.length > 0;
-    const entireWidth = totalWidth + treeAreaWidth;
-    const entireHeight = totalHeight + (includeTracks ? totalTrackAreaHeight : 0);
+    const entireWidth = totalWidth + treeAreaWidth + rowPanelsWidth;
+    const entireHeight = totalHeight +
+        (includeTracks ? totalTrackAreaHeight : 0) +
+        treeOverviewHeight;
     // the background is one raster image whatever its size, so what the figure
     // actually costs is its residue letters: each is an svg element of its own.
     // Past roughly this many the export runs to tens of seconds and can exhaust

package/dist/components/dialogs/ExportSVGDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ExportSVGDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/ExportSVGDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,EACL,KAAK,EACL,MAAM,EACN,gBAAgB,EAChB,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,KAAK,EACL,UAAU,EACV,UAAU,EACV,QAAQ,GACT,MAAM,eAAe,CAAA;AAEtB,OAAO,SAAS,MAAM,iBAAkB,CAAA;AAIxC,4EAA4E;AAC5E,gFAAgF;AAChF,+EAA+E;AAC/E,gBAAgB;AAChB,SAAS,UAAU,CAAC,EAAc;IAChC,qBAAqB,CAAC,GAAG,EAAE;QACzB,qBAAqB,CAAC,EAAE,CAAC,CAAA;IAC3B,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,eAAe,CAAC,EACtC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC1D,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAC1C,UAAU,CACX,CAAA;IACD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACjD,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,EACJ,UAAU,EACV,WAAW,EACX,aAAa,EACb,cAAc,EACd,cAAc,EACd,oBAAoB,EACpB,UAAU,EACV,MAAM,EACN,cAAc,EACd,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,SAAS,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAA;IAC3C,MAAM,WAAW,GAAG,UAAU,GAAG,aAAa,GAAG,cAAc,CAAA;IAC/D,MAAM,YAAY,GAChB,WAAW;QACX,CAAC,aAAa,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1C,kBAAkB,CAAA;IACpB,2EAA2E;IAC3E,4EAA4E;IAC5E,4EAA4E;IAC5E,4BAA4B;IAC5B,MAAM,MAAM,GACV,cAAc,IAAI,UAAU,KAAK,QAAQ,CAAC,CAAC,CAAC,UAAU,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAA;IAC5E,MAAM,aAAa,GAAG,MAAM,GAAG,OAAO,CAAA;IACtC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,YAAY;QAElB,oBAAC,aAAa;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,UAAU,oBAAuB;YAClC,oBAAC,SAAS,IACR,KAAK,EAAC,kBAAkB,EACxB,QAAQ,EAAE,UAAU,KAAK,QAAQ,EACjC,OAAO,EAAE,cAAc,EACvB,QAAQ,EAAE,GAAG,EAAE;oBACb,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;gBACpC,CAAC,GACD;YACD,SAAS,CAAC,CAAC,CAAC,CACX,oBAAC,SAAS,IACR,KAAK,EAAC,iBAAiB,EACvB,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,GAAG,EAAE;oBACb,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;gBAClC,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI;YACR;gBACE,oBAAC,WAAW;oBACV,oBAAC,SAAS,sBAAwB;oBAClC,oBAAC,UAAU,IACT,KAAK,EAAE,UAAU,EACjB,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,MAAM,CAAA;4BAC9B,IAAI,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,UAAU,EAAE,CAAC;gCAC/C,aAAa,CAAC,KAAK,CAAC,CAAA;4BACtB,CAAC;wBACH,CAAC;wBAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,QAAQ,EACd,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB;wBACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,UAAU,EAChB,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,uBAAuB,GAC7B,CACS,CACD,CACV;YACL,aAAa,CAAC,CAAC,CAAC,CACf,oBAAC,KAAK,IAAC,QAAQ,EAAC,SAAS,EAAC,KAAK,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE;;gBAC5B,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC;;gBACzC,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC;;gBAAmB,GAAG;gBAC9C,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC;4LAGpB,CACT,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS;gBACf,oEAAoE;gBACpE,qEAAqE;gBACrE,wCAAwC;gBACxC,QAAQ,EAAE,SAAS,EACnB,SAAS,EACP,SAAS,CAAC,CAAC,CAAC,oBAAC,gBAAgB,IAAC,IAAI,EAAE,EAAE,EAAE,KAAK,EAAC,SAAS,GAAG,CAAC,CAAC,CAAC,IAAI,EAEnE,OAAO,EAAE,GAAG,EAAE;oBACZ,YAAY,CAAC,IAAI,CAAC,CAAA;oBAClB,UAAU,CAAC,GAAG,EAAE;wBACd,KAAK,KAAK;6BACP,SAAS,CAAC;4BACT,KAAK;4BACL,cAAc;4BACd,aAAa,EAAE,SAAS,IAAI,aAAa;4BACzC,UAAU;yBACX,CAAC;6BACD,IAAI,CAAC,GAAG,EAAE;4BACT,OAAO,EAAE,CAAA;wBACX,CAAC,CAAC;6BACD,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;4BACpB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC,CAAC;6BACD,OAAO,CAAC,GAAG,EAAE;4BACZ,YAAY,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC,CAAC,CAAA;oBACN,CAAC,CAAC,CAAA;gBACJ,CAAC,IAEA,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,QAAQ,CAC7B;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,OAAO,EAAE,CAAA;gBACX,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}

package/dist/components/dialogs/FeatureDialog.js

@@ -3,17 +3,21 @@ import { Dialog } from '@jbrowse/core/ui';
 import { Button, Checkbox, DialogContent, Table, TableBody, TableCell, TableHead, TableRow, } from '@mui/material';
 import { observer } from 'mobx-react';
 const Toggles = observer(function ({ model }) {
-    const { featureFilters } = model;
+    // the accessions the file has, not the ones the filter map happens to hold:
+    // that map now carries only what the reader turned off, and before that it
+    // accumulated every accession of every file opened in this view
+    const { annotationTypes } = model;
+    const setAll = (shown) => {
+        for (const accession of annotationTypes.keys()) {
+            model.setFilter(accession, shown);
+        }
+    };
     return (React.createElement("div", null,
         React.createElement(Button, { onClick: () => {
-                for (const key of featureFilters.keys()) {
-                    model.setFilter(key, true);
-                }
+                setAll(true);
             } }, "Toggle all on"),
         React.createElement(Button, { onClick: () => {
-                for (const key of featureFilters.keys()) {
-                    model.setFilter(key, false);
-                }
+                setAll(false);
             } }, "Toggle all off")));
 });
 const FeatureTable = observer(function ({ model }) {
@@ -35,8 +39,8 @@ const FeatureTable = observer(function ({ model }) {
                     React.createElement(TableCell, null, "description"))),
             React.createElement(TableBody, null, [...annotationTypes.values()].map(({ accession, name, description }) => (React.createElement(TableRow, { key: accession },
                 React.createElement(TableCell, { padding: "checkbox" },
-                    React.createElement(Checkbox, { checked: model.featureFilters.get(accession) ?? false, onChange: () => {
-                            model.setFilter(accession, !model.featureFilters.get(accession));
+                    React.createElement(Checkbox, { checked: !model.turnedOffFeatures.get(accession), onChange: () => {
+                            model.setFilter(accession, !!model.turnedOffFeatures.get(accession));
                         } })),
                 React.createElement(TableCell, null,
                     React.createElement("div", { style: {

package/dist/components/dialogs/FeatureDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"FeatureDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/FeatureDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,aAAa,EACb,KAAK,EACL,SAAS,EACT,SAAS,EACT,SAAS,EACT,QAAQ,GACT,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACnE,4EAA4E;IAC5E,2EAA2E;IAC3E,gEAAgE;IAChE,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,MAAM,MAAM,GAAG,CAAC,KAAc,EAAE,EAAE;QAChC,KAAK,MAAM,SAAS,IAAI,eAAe,CAAC,IAAI,EAAE,EAAE,CAAC;YAC/C,KAAK,CAAC,SAAS,CAAC,SAAS,EAAE,KAAK,CAAC,CAAA;QACnC,CAAC;IACH,CAAC,CAAA;IACD,OAAO,CACL;QACE,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,IAAI,CAAC,CAAA;YACd,CAAC,oBAGM;QAET,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;gBACZ,MAAM,CAAC,KAAK,CAAC,CAAA;YACf,CAAC,qBAGM,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACxE,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC3D,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAA;IACxC,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;QAChC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;IACrE,CAAC;IACD,OAAO,CACL;QACE,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,GAAI;QACzB,oBAAC,KAAK,IAAC,IAAI,EAAC,OAAO;YACjB,oBAAC,SAAS;gBACR,oBAAC,QAAQ;oBACP,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU,GAAG;oBAChC,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,oBAAsB;oBAChC,oBAAC,SAAS,eAAiB;oBAC3B,oBAAC,SAAS,gBAAkB;oBAC5B,oBAAC,SAAS,sBAAwB,CACzB,CACD;YACZ,oBAAC,SAAS,QACP,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAChC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC,CACpC,oBAAC,QAAQ,IAAC,GAAG,EAAE,SAAS;gBACtB,oBAAC,SAAS,IAAC,OAAO,EAAC,UAAU;oBAC3B,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,EAChD,QAAQ,EAAE,GAAG,EAAE;4BACb,KAAK,CAAC,SAAS,CACb,SAAS,EACT,CAAC,CAAC,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,CACzC,CAAA;wBACH,CAAC,GACD,CACQ;gBACZ,oBAAC,SAAS;oBACR,6BACE,KAAK,EAAE;4BACL,KAAK,EAAE,EAAE;4BACT,MAAM,EAAE,EAAE;4BACV,UAAU,EAAE,WAAW,CAAC,SAAS,CAAC;yBACnC,GACD,CACQ;gBACZ,oBAAC,SAAS,QAAE,SAAS,CAAa;gBAClC,oBAAC,SAAS,QAAE,IAAI,CAAa;gBAC7B,oBAAC,SAAS,QAAE,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAa;gBAC9C,oBAAC,SAAS,QAAE,WAAW,CAAa,CAC3B,CACZ,CACF,CACS,CACN,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,OAAO,EACP,KAAK,GAIN;IACC,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,iBAAiB,EACvB,QAAQ,EAAC,IAAI;QAEb,oBAAC,aAAa;YACZ,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAChB,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}

package/dist/components/dialogs/TrackInfoDialog.js

@@ -8,7 +8,7 @@ const useStyles = makeStyles()(theme => ({
     textArea: {
         padding: theme.spacing(2),
         overflow: 'auto',
-        background: '#ddd',
+        background: theme.palette.action.selected,
         wordBreak: 'break-word',
     },
 }));

package/dist/components/dialogs/TrackInfoDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"TrackInfoDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/TrackInfoDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,UAAU,MAAM,kBAAmB,CAAA;AAI1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,QAAQ,EAAE,MAAM;QAChB,UAAU,EAAE,MAAM;QAClB,SAAS,EAAE,YAAY;KACxB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAC5B,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,QACJ,OAAO,EAAE,OAAO,EAChB,SAAS,QACT,QAAQ,EAAC,IAAI,EACb,KAAK,EAAE,gBAAgB,IAAI,EAAE;QAE7B,oBAAC,aAAa,QAGX,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,CACpB,oBAAC,UAAU,uCAA0C,CACtD,CAAC,CAAC,CAAC,CACF;YACE,oBAAC,UAAU,IAAC,IAAI,EAAE,IAAI,GAAI;YAC1B,6BAAK,SAAS,EAAE,OAAO,CAAC,QAAQ,IAAG,IAAI,CAAO,CAC7C,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAC,WAAW,YAEtD,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
+{"version":3,"file":"TrackInfoDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/TrackInfoDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,UAAU,MAAM,kBAAmB,CAAA;AAI1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,QAAQ,EAAE,MAAM;QAChB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,QAAQ;QACzC,SAAS,EAAE,YAAY;KACxB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAC5B,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,QACJ,OAAO,EAAE,OAAO,EAChB,SAAS,QACT,QAAQ,EAAC,IAAI,EACb,KAAK,EAAE,gBAAgB,IAAI,EAAE;QAE7B,oBAAC,aAAa,QAGX,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,CACpB,oBAAC,UAAU,uCAA0C,CACtD,CAAC,CAAC,CAAC,CACF;YACE,oBAAC,UAAU,IAAC,IAAI,EAAE,IAAI,GAAI;YAC1B,6BAAK,SAAS,EAAE,OAAO,CAAC,QAAQ,IAAG,IAAI,CAAO,CAC7C,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAC,WAAW,YAEtD,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}

package/dist/components/header/GappynessSlider.js

@@ -12,18 +12,13 @@ const GappynessSlider = observer(function GappynessSlider({ model, }) {
             allowedGappyness,
             "% gaps"),
         React.createElement(Slider
-        // Named, because the class alone is not enough to find it from outside.
-        // An MSA is normally embedded beside other MUI Sliders (in JBrowse, the
-        // linear view's own zoom control), so a `.MuiSlider-thumb` selector in a
-        // test or a screenshot spec picks whichever comes first in the document
-        // and drives that instead — which reads as this slider ignoring its
-        // keyboard. Target `[data-testid="gappyness_slider"] input` to reach the
-        // hidden range input MUI renders in the thumb, which is the node that
-        // takes focus and receives arrow/PageUp/PageDown.
+        // In JBrowse other MUI Sliders share the page, so `.MuiSlider-thumb`
+        // can match the wrong one. Tests and screenshot specs target
+        // `[data-testid="gappyness_slider"] input`, the hidden range input that
+        // takes focus and arrow/PageUp/PageDown.
         //
-        // Deliberately NOT `slotProps={{ input: ... }}`: passing slotProps here
-        // widens the Slider's generic so `onChange`'s `val` infers as
-        // `number | number[]` and no longer assigns to setAllowedGappyness.
+        // Not `slotProps={{ input: ... }}`: that widens `onChange`'s `val` to
+        // `number | number[]`, which setAllowedGappyness rejects.
         , { "data-testid": "gappyness_slider", style: { width: 100 }, min: 1, max: 100, value: allowedGappyness, onChange: (_, val) => {
                 model.setAllowedGappyness(val);
             } })));

package/dist/components/header/GappynessSlider.js.map

@@ -1 +1 @@
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+{"version":3,"file":"GappynessSlider.js","sourceRoot":"","sources":["../../../src/components/header/GappynessSlider.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACxD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,GAAG,EAAE,CAAC,EAAE;QAI3D,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE;;YACpB,gBAAgB;qBAC1B;QACb,oBAAC,MAAM;QACL,qEAAqE;QACrE,6DAA6D;QAC7D,wEAAwE;QACxE,yCAAyC;QACzC,EAAE;QACF,sEAAsE;QACtE,0DAA0D;2BAC9C,kBAAkB,EAC9B,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EACrB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,gBAAgB,EACvB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;YAChC,CAAC,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}