react-msaview 6.4.2 → 7.0.0

package/dist/components/msa/msaRaster.js.map

@@ -1 +1 @@
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package/dist/components/msa/renderHighlights.d.ts

@@ -5,13 +5,35 @@ export declare const highlightFill = "rgba(255,140,0,0.28)";
 export declare const highlightBorder = "rgba(210,90,0,0.95)";
 export declare const highlightRowFill = "rgba(255,140,0,0.18)";
 export declare const labelFontSize = 11;
-export declare function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth, }: {
+export declare const highlightLabelHeight: number;
+export interface LabelBox {
+    left: number;
+    right: number;
+    top: number;
+    bottom: number;
+}
+/**
+ * A highlight's label, over its band where it fits and beside it where it does
+ * not, kept inside `bounds` and out of the way of the labels already placed.
+ *
+ * Two single-residue highlights a column apart both want the same few pixels to
+ * the right of their bands, and a band scrolled off the left edge wants its
+ * label off-frame with it: the first overdrew two labels into an unreadable
+ * smudge, the second left the visible band untitled. Pass `placed` and each
+ * later label steps down a row instead of over the one before.
+ */
+export declare function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth, bounds, placed, }: {
     ctx: RenderCtx;
     theme: Theme;
     label: string;
     x: number;
     y: number;
     spanWidth: number;
+    bounds?: {
+        min: number;
+        max: number;
+    };
+    placed?: LabelBox[];
 }): void;
 /**
  * The persistent `highlights` overlay on the alignment: row tints, bordered
@@ -29,3 +51,19 @@ export declare function renderHighlights({ ctx, model, theme, offsetX, offsetY,
     width: number;
     height: number;
 }): void;
+/**
+ * Everything the alignment overlay owes to the document rather than to the
+ * mouse: the reference row's tint, a bordered band per run of highlighted
+ * columns, and the `highlights` layer. The live overlay canvas draws these
+ * under its hover and click bands, and the SVG export draws them and stops --
+ * a shared link that opens with columns highlighted exports with them too.
+ */
+export declare function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }: {
+    ctx: RenderCtx;
+    model: MsaViewModel;
+    theme: Theme;
+    offsetX: number;
+    offsetY: number;
+    width: number;
+    height: number;
+}): void;

package/dist/components/msa/renderHighlights.js

@@ -1,19 +1,50 @@
 import { setFontSize } from '../../setFontSize.js';
+import { referenceColor } from '../overlayColors.js';
+// a stronger fill plus a solid border, so a domain/motif band reads clearly over
+// the colored alignment cells (the faint hover-style wash alone is invisible
+// against clustalx coloring)
 export const highlightFill = 'rgba(255,140,0,0.28)';
 export const highlightBorder = 'rgba(210,90,0,0.95)';
 export const highlightRowFill = 'rgba(255,140,0,0.18)';
 export const labelFontSize = 11;
 const labelPad = 3;
-export function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth, }) {
+// the label box a highlight draws above its band, and the reason a tree block
+// has to consider rows a little outside itself
+export const highlightLabelHeight = labelFontSize + labelPad * 2;
+/**
+ * A highlight's label, over its band where it fits and beside it where it does
+ * not, kept inside `bounds` and out of the way of the labels already placed.
+ *
+ * Two single-residue highlights a column apart both want the same few pixels to
+ * the right of their bands, and a band scrolled off the left edge wants its
+ * label off-frame with it: the first overdrew two labels into an unreadable
+ * smudge, the second left the visible band untitled. Pass `placed` and each
+ * later label steps down a row instead of over the one before.
+ */
+export function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth, bounds, placed, }) {
     setFontSize(ctx, labelFontSize);
     ctx.textAlign = 'start';
     const boxWidth = ctx.measureText(label).width + labelPad * 2;
-    const boxHeight = labelFontSize + labelPad * 2;
-    const left = boxWidth <= spanWidth ? x : x + spanWidth + 2;
+    const boxHeight = highlightLabelHeight;
+    let left = boxWidth <= spanWidth ? x : x + spanWidth + 2;
+    if (bounds) {
+        left = Math.max(bounds.min, Math.min(left, bounds.max - boxWidth));
+    }
+    let top = y;
+    if (placed) {
+        const overlaps = (box) => box.left < left + boxWidth &&
+            box.right > left &&
+            box.top < top + boxHeight &&
+            box.bottom > top;
+        while (placed.some(overlaps)) {
+            top += boxHeight;
+        }
+        placed.push({ left, right: left + boxWidth, top, bottom: top + boxHeight });
+    }
     ctx.fillStyle = theme.palette.background.paper;
-    ctx.fillRect(left, y, boxWidth, boxHeight);
+    ctx.fillRect(left, top, boxWidth, boxHeight);
     ctx.fillStyle = theme.palette.text.primary;
-    ctx.fillText(label, left + labelPad, y + labelPad + labelFontSize - 2);
+    ctx.fillText(label, left + labelPad, top + labelPad + labelFontSize - 2);
 }
 /**
  * The persistent `highlights` overlay on the alignment: row tints, bordered
@@ -24,6 +55,7 @@ export function drawHighlightLabel({ ctx, theme, label, x, y, spanWidth, }) {
  */
 export function renderHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }) {
     const { resolvedHighlights, colWidth, rowHeight } = model;
+    const placed = [];
     ctx.lineWidth = 2;
     for (const { rowIndices, color } of resolvedHighlights) {
         ctx.fillStyle = color ?? highlightRowFill;
@@ -42,8 +74,41 @@ export function renderHighlights({ ctx, model, theme, offsetX, offsetY, width, h
         ctx.strokeStyle = color ?? highlightBorder;
         ctx.strokeRect(x, 0, spanWidth, height);
         if (label) {
-            drawHighlightLabel({ ctx, theme, label, x, y: 0, spanWidth });
+            drawHighlightLabel({
+                ctx,
+                theme,
+                label,
+                x,
+                y: 0,
+                spanWidth,
+                bounds: { min: 0, max: width },
+                placed,
+            });
         }
     }
 }
+/**
+ * Everything the alignment overlay owes to the document rather than to the
+ * mouse: the reference row's tint, a bordered band per run of highlighted
+ * columns, and the `highlights` layer. The live overlay canvas draws these
+ * under its hover and click bands, and the SVG export draws them and stops --
+ * a shared link that opens with columns highlighted exports with them too.
+ */
+export function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }) {
+    const { colWidth, rowHeight, referenceRowIndex, highlightedColumnRuns } = model;
+    if (referenceRowIndex !== undefined) {
+        ctx.fillStyle = referenceColor;
+        ctx.fillRect(0, referenceRowIndex * rowHeight - offsetY, width, rowHeight);
+    }
+    ctx.lineWidth = 2;
+    for (const { start, end } of highlightedColumnRuns) {
+        const x = start * colWidth - offsetX;
+        const w = (end - start + 1) * colWidth;
+        ctx.fillStyle = highlightFill;
+        ctx.fillRect(x, 0, w, height);
+        ctx.strokeStyle = highlightBorder;
+        ctx.strokeRect(x, 0, w, height);
+    }
+    renderHighlights({ ctx, model, theme, offsetX, offsetY, width, height });
+}
 //# sourceMappingURL=renderHighlights.js.map

package/dist/components/msa/renderHighlights.js.map

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package/dist/components/msa/renderMSABlock.d.ts

@@ -1,12 +1,11 @@
 import type { MsaViewModel } from '../../model.ts';
 import type { RenderCtx } from '../renderCtx.ts';
 import type { Theme } from '@mui/material';
-export declare function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, rasterTiles, }: {
+export declare function renderMSABlock({ model, offsetX, offsetY, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, rasterTiles, }: {
     offsetX: number;
     offsetY: number;
     theme: Theme;
     model: MsaViewModel;
-    contrastScheme: Record<string, string>;
     ctx: RenderCtx;
     highResScaleFactorOverride?: number;
     blockSizeXOverride?: number;

package/dist/components/msa/renderMSABlock.js

@@ -1,10 +1,10 @@
 import { setFontSize } from '../../setFontSize.js';
-import { adjustColorForContrast } from '../../util.js';
+import { adjustColorForContrast, contrastTextFn } from '../../util.js';
 import { getVisibleLeaves } from '../getVisibleLeaves.js';
 import { domainBandCursor } from './domainBandCursor.js';
 import { tileColorFn } from './tileColor.js';
 import { visibleColRange } from './visibleColRange.js';
-export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, rasterTiles, }) {
+export function renderMSABlock({ model, offsetX, offsetY, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, rasterTiles, }) {
     const { colWidth, blockSize, rowHeight, fontSize, highResScaleFactor, actuallyShowDomains, bgColor, } = model;
     const k = highResScaleFactorOverride ?? highResScaleFactor;
     const bx = blockSizeXOverride ?? blockSize;
@@ -29,7 +29,6 @@ export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, t
         model,
         ctx,
         theme,
-        contrastScheme,
         xStart,
         xEnd,
         visibleLeaves,
@@ -50,24 +49,19 @@ export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, t
     });
     ctx.resetTransform();
 }
-// Letter color to use over a domain box, keyed by accession. Domain fills come
-// from a categorical palette that has no fixed lightness, so ask the theme for a
-// readable text color per fill instead of assuming dark-on-light.
-function domainLetterColors(model, theme) {
-    return new Map(Object.entries(model.fillPalette).map(([accession, fill]) => [
-        accession,
-        theme.palette.getContrastText(fill),
-    ]));
-}
-function drawTilesAndText({ model, ctx, theme, contrastScheme, visibleLeaves, xStart, xEnd, referenceSeq, drawTiles, rasterTiles, }) {
+function drawTilesAndText({ model, ctx, theme, visibleLeaves, xStart, xEnd, referenceSeq, drawTiles, rasterTiles, }) {
     const { bgColor, columns, colWidth, rowHeight, relativeTo, showMsaLetters, subFeatureRows, domainBandsByStart, } = model;
     const tiles = drawTiles && bgColor;
     const paintTiles = tiles && !rasterTiles;
     if (paintTiles || showMsaLetters) {
-        // over raster tiles the letters take their color from contrastScheme, so
-        // the scheme lookup per cell is pure waste
-        const needsColor = paintTiles || !tiles;
+        // a letter takes its color from the cell it lands on, so the scheme lookup
+        // is only waste when nothing draws letters
+        const needsColor = paintTiles || showMsaLetters;
         const tileColor = tileColorFn(model);
+        // Domain fills come from a categorical palette with no fixed lightness, and
+        // a dynamic scheme colors a cell from its column, so a readable letter color
+        // is a question about the cell's own color rather than about its letter.
+        const contrastText = contrastTextFn(theme);
         const offsetXAligned = xStart * colWidth;
         const halfColWidth = colWidth / 2;
         // note: -rowHeight/4 matches +rowHeight/4 in tree
@@ -76,9 +70,6 @@ function drawTilesAndText({ model, ctx, theme, contrastScheme, visibleLeaves, xS
         // on a domain box or on the plain background; sub-row layout stacks the boxes
         // above the letters, so those rows are all plain background
         const overDomains = !drawTiles && !subFeatureRows;
-        const domainColors = overDomains
-            ? domainLetterColors(model, theme)
-            : undefined;
         for (let i = 0, l1 = visibleLeaves.length; i < l1; i++) {
             const node = visibleLeaves[i];
             const { name } = node.data;
@@ -104,15 +95,20 @@ function drawTilesAndText({ model, ctx, theme, contrastScheme, visibleLeaves, xS
                         const covering = bandAt(col);
                         ctx.fillStyle = covering
                             ? // on top of a domain box: contrast against the box fill
-                                domainColors.get(covering.annotation.accession)
-                            : tiles
-                                ? // on top of a colored tile
-                                    (contrastScheme[letter] ?? 'black')
-                                : !drawTiles || !color
-                                    ? // plain background, uncolored letters
-                                        theme.palette.text.primary
-                                    : // letter-color mode: darken/lighten to stay readable
-                                        adjustColorForContrast(color, theme.palette.background.default);
+                                contrastText(model.fillPalette[covering.annotation.accession])
+                            : isMatchingReference
+                                ? // the dot sits on the faint reference-match wash, which is
+                                    // the theme's background with a little of its text color in it
+                                    theme.palette.text.primary
+                                : tiles
+                                    ? // on top of a colored tile, or on the background where the
+                                        // scheme gives that cell no color
+                                        contrastText(color)
+                                    : !drawTiles || !color
+                                        ? // plain background, uncolored letters
+                                            theme.palette.text.primary
+                                        : // letter-color mode: darken/lighten to stay readable
+                                            adjustColorForContrast(color, theme.palette.background.default);
                         ctx.fillText(isMatchingReference ? '.' : letter, x + halfColWidth, textY);
                     }
                 }

package/dist/components/msa/renderMSABlock.js.map

@@ -1 +1 @@
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package/dist/components/msa/renderMSAMouseover.js

@@ -1,12 +1,7 @@
-import { clickColor, hoverColor, multiRowHoverColor, referenceColor, } from '../overlayColors.js';
-import { renderHighlights } from './renderHighlights.js';
-// the persistent highlightColumns overlay: a stronger fill plus a solid border
-// so a domain/motif band reads clearly over the colored alignment cells (the
-// faint hover-style wash alone is invisible against clustalx coloring)
-const highlightColumnsFill = 'rgba(255,140,0,0.28)';
-const highlightColumnsBorder = 'rgba(210,90,0,0.95)';
+import { clickColor, hoverColor, multiRowHoverColor } from '../overlayColors.js';
+import { renderPersistentHighlights } from './renderHighlights.js';
 export function renderMouseover({ ctx, model, theme, }) {
-    const { mouseCol, colWidth, msaCanvasWidth: width, height, rowHeight, scrollX, scrollY, mouseRow, mouseClickRow, mouseClickCol, highResScaleFactor, referenceRowIndex, hoveredRowIndices, highlightedColumnRuns, } = model;
+    const { mouseCol, colWidth, msaCanvasWidth: width, height, rowHeight, scrollX, scrollY, mouseRow, mouseClickRow, mouseClickCol, highResScaleFactor, hoveredRowIndices, } = model;
     ctx.resetTransform();
     ctx.clearRect(0, 0, width * highResScaleFactor, height * highResScaleFactor);
     ctx.scale(highResScaleFactor, highResScaleFactor);
@@ -18,28 +13,7 @@ export function renderMouseover({ ctx, model, theme, }) {
     const colBand = (index) => {
         ctx.fillRect(index * colWidth + scrollX, 0, colWidth, height);
     };
-    // the reference row (relativeTo) stays lit, as does every tip under a hovered
-    // tree node
-    if (referenceRowIndex !== undefined) {
-        ctx.fillStyle = referenceColor;
-        rowBand(referenceRowIndex);
-    }
-    ctx.fillStyle = multiRowHoverColor;
-    for (const rowIndex of hoveredRowIndices) {
-        rowBand(rowIndex);
-    }
-    // each contiguous run of highlighted columns draws as one filled, bordered
-    // band, so a domain/motif highlight stays visible over the alignment
-    ctx.lineWidth = 2;
-    for (const { start, end } of highlightedColumnRuns) {
-        const x = start * colWidth + scrollX;
-        const w = (end - start + 1) * colWidth;
-        ctx.fillStyle = highlightColumnsFill;
-        ctx.fillRect(x, 0, w, height);
-        ctx.strokeStyle = highlightColumnsBorder;
-        ctx.strokeRect(x, 0, w, height);
-    }
-    renderHighlights({
+    renderPersistentHighlights({
         ctx,
         model,
         theme,
@@ -48,6 +22,11 @@ export function renderMouseover({ ctx, model, theme, }) {
         width,
         height,
     });
+    // every tip under a hovered tree node stays lit
+    ctx.fillStyle = multiRowHoverColor;
+    for (const rowIndex of hoveredRowIndices) {
+        rowBand(rowIndex);
+    }
     ctx.fillStyle = hoverColor;
     if (mouseCol !== undefined) {
         colBand(mouseCol);

package/dist/components/msa/renderMSAMouseover.js.map

@@ -1 +1 @@
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+{"version":3,"file":"renderMSAMouseover.js","sourceRoot":"","sources":["../../../src/components/msa/renderMSAMouseover.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAA;AAChF,OAAO,EAAE,0BAA0B,EAAE,MAAM,uBAAuB,CAAA;AAKlE,MAAM,UAAU,eAAe,CAAC,EAC9B,GAAG,EACH,KAAK,EACL,KAAK,GAKN;IACC,MAAM,EACJ,QAAQ,EACR,QAAQ,EACR,cAAc,EAAE,KAAK,EACrB,MAAM,EACN,SAAS,EACT,OAAO,EACP,OAAO,EACP,QAAQ,EACR,aAAa,EACb,aAAa,EACb,kBAAkB,EAClB,iBAAiB,GAClB,GAAG,KAAK,CAAA;IACT,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,KAAK,GAAG,kBAAkB,EAAE,MAAM,GAAG,kBAAkB,CAAC,CAAA;IAC5E,GAAG,CAAC,KAAK,CAAC,kBAAkB,EAAE,kBAAkB,CAAC,CAAA;IAEjD,8EAA8E;IAC9E,oEAAoE;IACpE,MAAM,OAAO,GAAG,CAAC,KAAa,EAAE,EAAE;QAChC,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,KAAK,GAAG,SAAS,GAAG,OAAO,EAAE,KAAK,EAAE,SAAS,CAAC,CAAA;IAChE,CAAC,CAAA;IACD,MAAM,OAAO,GAAG,CAAC,KAAa,EAAE,EAAE;QAChC,GAAG,CAAC,QAAQ,CAAC,KAAK,GAAG,QAAQ,GAAG,OAAO,EAAE,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAA;IAC/D,CAAC,CAAA;IAED,0BAA0B,CAAC;QACzB,GAAG;QACH,KAAK;QACL,KAAK;QACL,OAAO,EAAE,CAAC,OAAO;QACjB,OAAO,EAAE,CAAC,OAAO;QACjB,KAAK;QACL,MAAM;KACP,CAAC,CAAA;IAEF,gDAAgD;IAChD,GAAG,CAAC,SAAS,GAAG,kBAAkB,CAAA;IAClC,KAAK,MAAM,QAAQ,IAAI,iBAAiB,EAAE,CAAC;QACzC,OAAO,CAAC,QAAQ,CAAC,CAAA;IACnB,CAAC;IAED,GAAG,CAAC,SAAS,GAAG,UAAU,CAAA;IAC1B,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;QAC3B,OAAO,CAAC,QAAQ,CAAC,CAAA;IACnB,CAAC;IACD,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;QAC3B,OAAO,CAAC,QAAQ,CAAC,CAAA;IACnB,CAAC;IACD,GAAG,CAAC,SAAS,GAAG,UAAU,CAAA;IAC1B,IAAI,aAAa,KAAK,SAAS,EAAE,CAAC;QAChC,OAAO,CAAC,aAAa,CAAC,CAAA;IACxB,CAAC;IACD,IAAI,aAAa,KAAK,SAAS,EAAE,CAAC;QAChC,OAAO,CAAC,aAAa,CAAC,CAAA;IACxB,CAAC;AACH,CAAC"}

package/dist/components/renderCtx.d.ts

@@ -4,4 +4,4 @@
  * SVG export) satisfy this, so renderers can be typed against it without an
  * `as any` cast at the SVG-export boundary.
  */
-export type RenderCtx = Pick<CanvasRenderingContext2D, 'arc' | 'beginPath' | 'clearRect' | 'closePath' | 'fill' | 'fillRect' | 'fillStyle' | 'fillText' | 'font' | 'lineTo' | 'lineWidth' | 'measureText' | 'moveTo' | 'resetTransform' | 'restore' | 'save' | 'scale' | 'setLineDash' | 'stroke' | 'strokeRect' | 'strokeStyle' | 'textAlign' | 'textBaseline' | 'translate'>;
+export type RenderCtx = Pick<CanvasRenderingContext2D, 'arc' | 'beginPath' | 'clearRect' | 'closePath' | 'fill' | 'fillRect' | 'fillStyle' | 'fillText' | 'font' | 'lineTo' | 'lineWidth' | 'measureText' | 'moveTo' | 'quadraticCurveTo' | 'resetTransform' | 'restore' | 'save' | 'scale' | 'setLineDash' | 'stroke' | 'strokeRect' | 'strokeStyle' | 'textAlign' | 'textBaseline' | 'translate'>;

package/dist/components/tracks/TrackBlocks.js

@@ -1,24 +1,24 @@
 import React from 'react';
+import { useTheme } from '@mui/material';
 import { observer } from 'mobx-react';
 import { useCanvasAutorun } from '../../useCanvasAutorun.js';
-import { useColorContrast } from '../../useColorContrast.js';
 import { TrackResizeHandle } from '../ResizeHandles.js';
 import { drawTrackBlock } from './drawTracks.js';
 const TrackBlock = observer(function ({ model, track, offsetX, }) {
-    const { blockSize, colorScheme, highResScaleFactor } = model;
-    const { height, customColorScheme } = track.model;
-    const { theme, contrastScheme } = useColorContrast(customColorScheme ?? colorScheme);
+    const { blockSize, highResScaleFactor } = model;
+    const { height } = track.model;
+    const theme = useTheme();
     const canvasWidth = blockSize * highResScaleFactor;
     const canvasHeight = height * highResScaleFactor;
     const ref = useCanvasAutorun({
         draw: ctx => {
             ctx.resetTransform();
             ctx.clearRect(0, 0, canvasWidth, canvasHeight);
-            drawTrackBlock({ model, ctx, track, offsetX, theme, contrastScheme });
+            drawTrackBlock({ model, ctx, track, offsetX, theme });
         },
         width: canvasWidth,
         height: canvasHeight,
-        deps: [model, track, offsetX, theme, contrastScheme],
+        deps: [model, track, offsetX, theme],
     });
     return (React.createElement("canvas", { ref: ref, width: canvasWidth, height: canvasHeight, style: {
             position: 'absolute',
@@ -40,10 +40,9 @@ const TrackBlocks = observer(function ({ model, track, }) {
     // last columns appear in the tracks but not in the alignment, and the hovered
     // -column indicator (sized to the canvas) stops short of the track it crosses
     const { blocksX, msaCanvasWidth, scrollX } = model;
-    const { kind, height, data } = track.model;
-    // a text track with no data draws nothing, and an empty row of its own would
-    // still take up vertical space
-    if (kind === 'text' && !data) {
+    const { kind, height, data, arcs } = track.model;
+    // a track with nothing to draw would still take up its vertical space
+    if ((kind === 'text' && !data) || (kind === 'arc' && !arcs?.length)) {
         return null;
     }
     return (React.createElement("div", { style: {
@@ -59,7 +58,7 @@ const TrackBlocks = observer(function ({ model, track, }) {
                 transform: `translateX(${scrollX}px)`,
                 willChange: 'transform',
             } }, blocksX.map(bx => (React.createElement(TrackBlock, { key: bx, model: model, track: track, offsetX: bx })))),
-        React.createElement(TrackResizeHandle, { model: model, kind: kind })));
+        React.createElement(TrackResizeHandle, { model: model, track: track })));
 });
 export default TrackBlocks;
 //# sourceMappingURL=TrackBlocks.js.map

package/dist/components/tracks/TrackBlocks.js.map

@@ -1 +1 @@
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package/dist/components/tracks/drawTracks.d.ts

@@ -1,6 +1,6 @@
 import type { ColumnCounts } from '../../columnCounts.ts';
 import type { MsaViewModel } from '../../model.ts';
-import type { BasicTrack } from '../../types.ts';
+import type { Arc, BasicTrack } from '../../types.ts';
 import type { RenderCtx } from '../renderCtx.ts';
 import type { Theme } from '@mui/material';
 export declare function drawConservationBars({ ctx, values, color, colWidth, trackHeight, offsetX, blockSize, }: {
@@ -13,18 +13,38 @@ export declare function drawConservationBars({ ctx, values, color, colWidth, tra
     blockSize: number;
 }): void;
 export declare function barTrackValues(model: MsaViewModel, trackId: string): number[];
-export declare function drawTextTrackContent({ ctx, data, colorScheme, contrastScheme, bgColor, textColor, colWidth, rowHeight, offsetX, blockSize, }: {
+export declare function drawArcs({ ctx, arcs, color, colWidth, trackHeight, offsetX, blockSize, }: {
+    ctx: RenderCtx;
+    arcs: Arc[] | undefined;
+    color: string;
+    colWidth: number;
+    trackHeight: number;
+    offsetX: number;
+    blockSize: number;
+}): void;
+export declare function drawTextTrackContent({ ctx, data, colorScheme, contrastText, bgColor, drawLetters, colWidth, rowHeight, offsetX, blockSize, }: {
     ctx: RenderCtx;
     data: string | undefined;
     colorScheme: Record<string, string>;
-    contrastScheme: Record<string, string>;
+    contrastText: (color: string | undefined) => string;
     bgColor: boolean;
-    textColor: string;
+    drawLetters: boolean;
     colWidth: number;
     rowHeight: number;
     offsetX: number;
     blockSize: number;
 }): void;
+export declare function rulerStep(colWidth: number, minPixels?: number): number;
+export declare function drawColumnRuler({ ctx, numColumns, label, textColor, colWidth, trackHeight, offsetX, blockSize, }: {
+    ctx: RenderCtx;
+    numColumns: number;
+    label: (col: number) => string | undefined;
+    textColor: string;
+    colWidth: number;
+    trackHeight: number;
+    offsetX: number;
+    blockSize: number;
+}): void;
 export declare function drawSequenceLogo({ ctx, colStats, colorScheme, maxBits, textColor, colWidth, trackHeight, offsetX, blockSize, }: {
     ctx: RenderCtx;
     colStats: ColumnCounts;
@@ -42,14 +62,13 @@ export declare function drawSequenceLogo({ ctx, colStats, colorScheme, maxBits,
  * canvas blocks and the SVG export -- draw into the same coordinate space, and
  * adding a track kind means a `kind`, a draw function above, and a case here.
  */
-export declare function drawTrackBlock({ model, ctx, track, offsetX, offsetY, theme, contrastScheme, blockSizeXOverride, highResScaleFactorOverride, }: {
+export declare function drawTrackBlock({ model, ctx, track, offsetX, offsetY, theme, blockSizeXOverride, highResScaleFactorOverride, }: {
     model: MsaViewModel;
     ctx: RenderCtx;
     track: BasicTrack;
     offsetX: number;
     offsetY?: number;
     theme: Theme;
-    contrastScheme: Record<string, string>;
     blockSizeXOverride?: number;
     highResScaleFactorOverride?: number;
 }): void;
@@ -57,11 +76,10 @@ export declare function drawTrackBlock({ model, ctx, track, offsetX, offsetY, th
  * Every turned-on track stacked top to bottom, for the SVG export. The live
  * view draws the same content one canvas block at a time -- see TrackBlocks.
  */
-export declare function renderAllTracks({ model, ctx, offsetX, contrastScheme, theme, blockSizeXOverride, highResScaleFactorOverride, }: {
+export declare function renderAllTracks({ model, ctx, offsetX, theme, blockSizeXOverride, highResScaleFactorOverride, }: {
     model: MsaViewModel;
     ctx: RenderCtx;
     offsetX: number;
-    contrastScheme: Record<string, string>;
     theme: Theme;
     blockSizeXOverride?: number;
     highResScaleFactorOverride?: number;