react-msaview 6.3.0 → 6.4.0

package/dist/exportFileName.js.map

@@ -1 +1 @@
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+{"version":3,"file":"exportFileName.js","sourceRoot":"","sources":["../src/exportFileName.ts"],"names":[],"mappings":"AAEA;;;GAGG;AACH,MAAM,UAAU,cAAc,CAC5B,QAAkC,EAClC,SAAiB;IAEjB,MAAM,GAAG,GAAG,QAEC,CAAA;IACb,MAAM,IAAI,GAAG,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,SAAS,IAAI,GAAG,EAAE,IAAI,CAAA;IACpD,MAAM,IAAI,GAAG,IAAI;QACf,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAClB,EAAE,KAAK,CAAC,OAAO,CAAC;SACf,GAAG,EAAE;QACN,EAAE,OAAO,CAAC,UAAU,EAAE,EAAE,CAAC,CAAA;IAC3B,OAAO,GAAG,IAAI,IAAI,OAAO,IAAI,SAAS,EAAE,CAAA;AAC1C,CAAC"}

package/dist/renderToStaticMarkup.d.ts

@@ -0,0 +1,19 @@
+import type React from 'react';
+/**
+ * Render a React element to a static markup string, for the SVG export.
+ *
+ * Inlined rather than imported from `@jbrowse/core/util` on purpose, and this
+ * one is the removal direction of the rule in CLAUDE.md rather than the
+ * addition direction. Core dropped `renderToStaticMarkup` from that barrel in
+ * jbrowse-components 0d034e2bd8 -- deliberately, because it was the barrel's
+ * only reach into react-dom and the barrel is loaded in the RPC worker, which
+ * never renders. The export path is the only caller, so nothing here or in
+ * jbrowse-plugin-msaview/-tview failed to build, lint, typecheck, or boot; the
+ * published 3.4.0 and 2.2.1 bundles simply threw the first time a user asked
+ * for an SVG on a v5 host.
+ *
+ * A rendering library asking its host for a renderer was the odd coupling. Both
+ * `react-dom` and `react-dom/client` are long-established host externals, so
+ * this costs a few hundred bytes in the plugin bundle and no duplicate react.
+ */
+export declare function renderToStaticMarkup(node: React.ReactElement): string;

package/dist/renderToStaticMarkup.js

@@ -0,0 +1,46 @@
+import { flushSync } from 'react-dom';
+import { createRoot } from 'react-dom/client';
+/**
+ * Render a React element to a static markup string, for the SVG export.
+ *
+ * Inlined rather than imported from `@jbrowse/core/util` on purpose, and this
+ * one is the removal direction of the rule in CLAUDE.md rather than the
+ * addition direction. Core dropped `renderToStaticMarkup` from that barrel in
+ * jbrowse-components 0d034e2bd8 -- deliberately, because it was the barrel's
+ * only reach into react-dom and the barrel is loaded in the RPC worker, which
+ * never renders. The export path is the only caller, so nothing here or in
+ * jbrowse-plugin-msaview/-tview failed to build, lint, typecheck, or boot; the
+ * published 3.4.0 and 2.2.1 bundles simply threw the first time a user asked
+ * for an SVG on a v5 host.
+ *
+ * A rendering library asking its host for a renderer was the odd coupling. Both
+ * `react-dom` and `react-dom/client` are long-established host externals, so
+ * this costs a few hundred bytes in the plugin bundle and no duplicate react.
+ */
+export function renderToStaticMarkup(node) {
+    const div = document.createElement('div');
+    const root = createRoot(div);
+    let html;
+    try {
+        flushSync(() => {
+            root.render(node);
+        });
+        html = div.innerHTML;
+    }
+    finally {
+        // A real client root, not a server render: effects run, so every `observer`
+        // in the tree gets a live MobX reaction. Left mounted, an export of a large
+        // alignment keeps tens of thousands of detached nodes subscribed to the
+        // model and re-rendering into a dead div on every pan and zoom, once per
+        // export ever taken. The markup is a string by here and needs no DOM.
+        root.unmount();
+    }
+    // SVG 1.1 presentation attributes (`fill`, `stroke`) take a <color>, which
+    // excludes rgba() -- alpha belongs in a separate fill-opacity. Illustrator and
+    // older Inkscape drop an element whose fill they cannot parse, so alpha is
+    // stripped rather than left to break the shape. MUI palette values are the
+    // usual source. Dropping rather than converting is what the figure snapshots
+    // encode.
+    return html.replaceAll(/\brgba\((.+?),[^,]+?\)/g, 'rgb($1)');
+}
+//# sourceMappingURL=renderToStaticMarkup.js.map

package/dist/renderToStaticMarkup.js.map

@@ -0,0 +1 @@
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package/dist/renderToSvg.js

@@ -1,6 +1,5 @@
 /* eslint-disable react-refresh/only-export-components */
 import React from 'react';
-import { renderToStaticMarkup } from '@jbrowse/core/util';
 import { when } from 'mobx';
 import { visibleRowRange } from './components/getVisibleLeaves.js';
 import MinimapSVG from './components/minimap/MinimapSVG.js';
@@ -11,6 +10,7 @@ import { renderMSABlock } from './components/msa/renderMSABlock.js';
 import { visibleColRange } from './components/msa/visibleColRange.js';
 import { renderAllTracks } from './components/tracks/drawTracks.js';
 import { renderTreeCanvas } from './components/tree/renderTreeCanvas.js';
+import { renderToStaticMarkup } from './renderToStaticMarkup.js';
 import { colorContrast } from './util.js';
 // domain-legend geometry, shared by the width calculation and the renderer so
 // the reserved column on the right exactly fits the drawn legend

package/dist/renderToSvg.js.map

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package/dist/version.d.ts

@@ -1 +1 @@
-export declare const version = "6.3.0";
+export declare const version = "6.4.0";

package/dist/version.js

@@ -1,2 +1,2 @@
-export const version = '6.3.0';
+export const version = '6.4.0';
 //# sourceMappingURL=version.js.map

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "react-msaview",
   "author": "Colin",
-  "version": "6.3.0",
+  "version": "6.4.0",
   "license": "MIT",
   "type": "module",
   "repository": {
@@ -43,8 +43,8 @@
     "@gmod/newick": "^1.0.0",
     "colord": "^2.9.3",
     "flatbush": "^4.6.2",
-    "@jbrowse/svgcanvas": "6.3.0",
-    "msa-parsers": "6.3.0"
+    "@jbrowse/svgcanvas": "6.4.0",
+    "msa-parsers": "6.4.0"
   },
   "scripts": {
     "clean": "rimraf dist bundle",

package/src/exportFileName.ts

@@ -9,7 +9,8 @@ export function exportFileName(
   extension: string,
 ) {
   const loc = location as
-    { uri?: string; localPath?: string; name?: string } | undefined
+    | { uri?: string; localPath?: string; name?: string }
+    | undefined
   const path = loc?.uri ?? loc?.localPath ?? loc?.name
   const base = path
     ?.split(/[?#]/)[0]

package/src/renderToStaticMarkup.ts

@@ -0,0 +1,47 @@
+import { flushSync } from 'react-dom'
+import { createRoot } from 'react-dom/client'
+
+import type React from 'react'
+
+/**
+ * Render a React element to a static markup string, for the SVG export.
+ *
+ * Inlined rather than imported from `@jbrowse/core/util` on purpose, and this
+ * one is the removal direction of the rule in CLAUDE.md rather than the
+ * addition direction. Core dropped `renderToStaticMarkup` from that barrel in
+ * jbrowse-components 0d034e2bd8 -- deliberately, because it was the barrel's
+ * only reach into react-dom and the barrel is loaded in the RPC worker, which
+ * never renders. The export path is the only caller, so nothing here or in
+ * jbrowse-plugin-msaview/-tview failed to build, lint, typecheck, or boot; the
+ * published 3.4.0 and 2.2.1 bundles simply threw the first time a user asked
+ * for an SVG on a v5 host.
+ *
+ * A rendering library asking its host for a renderer was the odd coupling. Both
+ * `react-dom` and `react-dom/client` are long-established host externals, so
+ * this costs a few hundred bytes in the plugin bundle and no duplicate react.
+ */
+export function renderToStaticMarkup(node: React.ReactElement) {
+  const div = document.createElement('div')
+  const root = createRoot(div)
+  let html: string
+  try {
+    flushSync(() => {
+      root.render(node)
+    })
+    html = div.innerHTML
+  } finally {
+    // A real client root, not a server render: effects run, so every `observer`
+    // in the tree gets a live MobX reaction. Left mounted, an export of a large
+    // alignment keeps tens of thousands of detached nodes subscribed to the
+    // model and re-rendering into a dead div on every pan and zoom, once per
+    // export ever taken. The markup is a string by here and needs no DOM.
+    root.unmount()
+  }
+  // SVG 1.1 presentation attributes (`fill`, `stroke`) take a <color>, which
+  // excludes rgba() -- alpha belongs in a separate fill-opacity. Illustrator and
+  // older Inkscape drop an element whose fill they cannot parse, so alpha is
+  // stripped rather than left to break the shape. MUI palette values are the
+  // usual source. Dropping rather than converting is what the figure snapshots
+  // encode.
+  return html.replaceAll(/\brgba\((.+?),[^,]+?\)/g, 'rgb($1)')
+}

package/src/renderToSvg.tsx

@@ -1,7 +1,6 @@
 /* eslint-disable react-refresh/only-export-components */
 import React from 'react'
 
-import { renderToStaticMarkup } from '@jbrowse/core/util'
 import { when } from 'mobx'
 
 import { visibleRowRange } from './components/getVisibleLeaves.ts'
@@ -13,6 +12,7 @@ import { renderMSABlock } from './components/msa/renderMSABlock.ts'
 import { visibleColRange } from './components/msa/visibleColRange.ts'
 import { renderAllTracks } from './components/tracks/drawTracks.ts'
 import { renderTreeCanvas } from './components/tree/renderTreeCanvas.ts'
+import { renderToStaticMarkup } from './renderToStaticMarkup.ts'
 import { colorContrast } from './util.ts'
 
 import type { MsaViewModel } from './model.ts'

package/src/version.ts

@@ -1 +1 @@
-export const version = '6.3.0'
+export const version = '6.4.0'