react-msaview 6.2.2 → 6.2.3

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Files changed (6) hide show
  1. package/bundle/index.js +1 -1
  2. package/bundle/index.js.map +1 -1
  3. package/dist/version.d.ts +1 -1
  4. package/dist/version.js +1 -1
  5. package/package.json +3 -3
  6. package/src/version.ts +1 -1
package/bundle/index.js CHANGED
@@ -382,7 +382,7 @@ return result$$;`.replaceAll("$$",String(XEe)));return XEe+=1,(l,c)=>i(s,l,c)},M
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Dm.default.createElement(Ba,{anchorReference:"anchorPosition",anchorPosition:{top:e.y,left:e.x},transitionDuration:0,keepMounted:!0,open:!!e,onClose:t},Dm.default.createElement(jr,{dense:!0,disabled:!0},n),Dm.default.createElement(jr,{dense:!0,onClick:()=>{o.queueDialog(a=>[Bmt,{info:o.getRowData(n),model:o,nodeName:n,onClose:a}]),t()}},"More info..."),Dm.default.createElement(jr,{dense:!0,onClick:()=>{o.toggleCollapsed(s),t()}},i?"Expand subtree":"Collapse subtree"),Dm.default.createElement(jr,{dense:!0,onClick:()=>{o.drawRelativeTo(e.name),t()}},"Indicate differences from this row"),o.relativeTo?Dm.default.createElement(jr,{dense:!0,onClick:()=>{o.drawRelativeTo(void 0),t()}},"Clear reference row"):null)}),O2e=Lmt;c2();var p2=w(V(),1);var lR=class{constructor(t=1/0,o=Float64Array,r=Uint32Array){let n=t!==1/0;this.ids=n?new r(t):[],this.values=n?new o(t):[],this.capacity=t,this.length=0}clear(){this.length=0}push(t,o){if(this.length===this.capacity)throw new RangeError("Queue is at capacity.");let r=this.length++;for(;r>0;){let n=r-1>>1,s=this.values[n];if(o>=s)break;this.ids[r]=this.ids[n],this.values[r]=s,r=n}this.ids[r]=t,this.values[r]=o}pop(){if(this.length===0)return;let t=this.ids,o=this.values,r=t[0],n=--this.length;if(n>0){let s=t[n],i=o[n],a=0,l=n>>1;for(;a<l;){let c=(a<<1)+1,u=c+1,p=c+(+(u<n)&+(o[u]<o[c]));if(o[p]>=i)break;t[a]=t[p],o[a]=o[p],a=p}t[a]=s,o[a]=i}return r}peek(){return this.length>0?this.ids[0]:void 0}peekValue(){return this.length>0?this.values[0]:void 0}shrink(){Array.isArray(this.ids)&&(this.ids.length=this.length),Array.isArray(this.values)&&(this.values.length=this.length)}};var z2e=[Int8Array,Uint8Array,Uint8ClampedArray,Int16Array,Uint16Array,Int32Array,Uint32Array,Float32Array,Float64Array],K7=3,cR=class e{static from(t,o=0){if(o%8!==0)throw new Error("byteOffset must be 8-byte aligned.");if(!t||t.byteLength===void 0||"buffer"in t)throw new Error("Data must be an instance of ArrayBuffer or SharedArrayBuffer.");let[r,n]=new Uint8Array(t,o+0,2);if(r!==251)throw new Error("Data does not appear to be in a Flatbush format.");let s=n>>4;if(s!==K7)throw new Error(`Got v${s} data when expected v${K7}.`);let i=z2e[n&15];if(!i)throw new Error("Unrecognized array type.");let[a]=new Uint16Array(t,o+2,1),[l]=new Uint32Array(t,o+4,1);return new e(l,a,i,void 0,t,o)}constructor(t,o=16,r=Float64Array,n=ArrayBuffer,s,i=0){if(t===void 0)throw new Error("Missing required argument: numItems.");if(isNaN(t)||t<=0)throw new Error(`Unexpected numItems value: ${t}.`);this.numItems=+t,this.nodeSize=Math.min(Math.max(+o,2),65535),this.byteOffset=i;let a=t,l=a;this._levelBounds=[a*4];do a=Math.ceil(a/this.nodeSize),l+=a,this._levelBounds.push(l*4);while(a!==1);this.ArrayType=r,this.IndexArrayType=l<16384?Uint16Array:Uint32Array;let c=z2e.indexOf(r),u=l*4*r.BYTES_PER_ELEMENT;if(c<0)throw new Error(`Unexpected typed array class: ${r}.`);let p=r,f=this.IndexArrayType;if(s)this.data=s,this._boxes=new p(s,i+8,l*4),this._indices=new f(s,i+8+u,l),this._pos=l*4,this.minX=this._boxes[this._pos-4],this.minY=this._boxes[this._pos-3],this.maxX=this._boxes[this._pos-2],this.maxY=this._boxes[this._pos-1];else{let d=this.data=new n(8+u+l*this.IndexArrayType.BYTES_PER_ELEMENT);this._boxes=new p(d,8,l*4),this._indices=new f(d,8+u,l),this._pos=0,this.minX=1/0,this.minY=1/0,this.maxX=-1/0,this.maxY=-1/0,new Uint8Array(d,0,2).set([251,(K7<<4)+c]),new Uint16Array(d,2,1)[0]=o,new Uint32Array(d,4,1)[0]=t}this._queue=new lR}add(t,o,r=t,n=o){let s=this._pos,i=s>>2,a=this._boxes;return this._indices[i]=i,a[s]=t,a[s+1]=o,a[s+2]=r,a[s+3]=n,this._pos=s+4,t<this.minX&&(this.minX=t),o<this.minY&&(this.minY=o),r>this.maxX&&(this.maxX=r),n>this.maxY&&(this.maxY=n),i}finish(){if(this._pos>>2!==this.numItems)throw new Error(`Added ${this._pos>>2} items when expected ${this.numItems}.`);let t=this._boxes;if(this.numItems<=this.nodeSize){t[this._pos++]=this.minX,t[this._pos++]=this.minY,t[this._pos++]=this.maxX,t[this._pos++]=this.maxY;return}let{numItems:o,minX:r,minY:n,nodeSize:s,_indices:i,_levelBounds:a}=this,l=this.maxX-r||1,c=this.maxY-n||1,u=new Int32Array(o),p=65535,f=p/l,d=p/c;for(let y=0,b=0;y<o;y++){let h=t[b++],A=t[b++],x=t[b++],C=t[b++],T=f*((h+x)/2-r)|0,P=d*((A+C)/2-n)|0;u[y]=Umt(T,P)}Hmt(u,t,i,0,o-1,s);let g=o*4;for(let y=0,b=0;y<a.length-1;y++){let h=a[y];for(;b<h;){let A=b,x=t[b++],C=t[b++],T=t[b++],P=t[b++];for(let E=1;E<s&&b<h;E++)x=Math.min(x,t[b++]),C=Math.min(C,t[b++]),T=Math.max(T,t[b++]),P=Math.max(P,t[b++]);i[g>>2]=A,t[g++]=x,t[g++]=C,t[g++]=T,t[g++]=P}}this._pos=g}search(t,o,r,n,s){if(this._pos!==this._boxes.length)throw new Error("Data not yet indexed - call index.finish().");let{_boxes:i,_levelBounds:a,_indices:l,nodeSize:c}=this,u=this.numItems*4,p=i.length-4,f=a.length-1,d=[],g=[],y=!1;for(;p!==void 0;){let b=Math.min(p+c*4,a[f]),h=p>=u;if(y)this._collectContained(p,b,f,u,g,s);else for(let A=p;A<b;A+=4){let x=i[A];if(r<x)continue;let C=i[A+1];if(n<C)continue;let T=i[A+2];if(t>T)continue;let P=i[A+3];if(o>P)continue;let E=l[A>>2]|0;if(h){let M=+(t<=x&&o<=C&&r>=T&&n>=P);d.push(E|M,f-1)}else(s===void 0||s(E,x,C,T,P))&&g.push(E)}f=d.pop(),p=d.pop(),p!==void 0&&(y=(p&1)===1,p&=-2)}return g}_collectContained(t,o,r,n,s,i){let a=this._boxes,l=this._indices,c=t;for(let p=r;p>0;p--)c=l[c>>2];let u=Math.min(c+(o-t)*this.nodeSize**r,n);if(i===void 0)for(;c<u;c+=4)s.push(l[c>>2]|0);else for(;c<u;c+=4){let p=l[c>>2]|0;i(p,a[c],a[c+1],a[c+2],a[c+3])&&s.push(p)}}neighbors(t,o,r=1/0,n=1/0,s){if(this._pos!==this._boxes.length)throw new Error("Data not yet indexed - call index.finish().");let{_boxes:i,_levelBounds:a,_indices:l,_queue:c,nodeSize:u}=this,p=this.numItems*4,f=u*4,d=[],g=n*n,y=r===1,b=g;for(c.push(i.length-4<<1,0);c.length;){let h=c.ids[0];if(h&1){if(c.pop(),d.push(h>>1),d.length===r)break;continue}c.pop();let A=h>>1,x=A<p,C=Math.min(A+f,Qmt(A,a));for(let T=A;T<C;T+=4){let P=i[T],E=i[T+1],M=i[T+2],R=i[T+3],I=Math.max(Math.max(P-t,t-M),0),_=Math.max(Math.max(E-o,o-R),0),v=I*I+_*_;if(v>b)continue;let O=l[T>>2]|0;x?(s===void 0||s(O))&&(c.push(O<<1|1,v),y&&v<b&&(b=v)):c.push(O<<1,v)}}return c.clear(),d}};function Qmt(e,t){let o=0,r=t.length-1;for(;o<r;){let n=o+r>>1;t[n]>e?r=n:o=n+1}return t[o]}function Hmt(e,t,o,r,n,s){let i=[r,n];for(;i.length;){let a=i.pop()||0,l=i.pop()||0;if(a-l<=s&&Math.floor(l/s)>=Math.floor(a/s))continue;let c=e[l],u=e[l+a>>1],p=e[a],f=c>u!=c>p?c:u<c!=u<p?u:p,d=l-1,g=a+1;for(;;){do d++;while(e[d]<f);do g--;while(e[g]>f);if(d>=g)break;jmt(e,t,o,d,g)}i.push(l,g,g+1,a)}}function jmt(e,t,o,r,n){let s=e[r];e[r]=e[n],e[n]=s;let i=4*r,a=4*n,l=t[i],c=t[i+1],u=t[i+2],p=t[i+3];t[i]=t[a],t[i+1]=t[a+1],t[i+2]=t[a+2],t[i+3]=t[a+3],t[a]=l,t[a+1]=c,t[a+2]=u,t[a+3]=p;let f=o[r];o[r]=o[n],o[n]=f}function Umt(e,t){let o=e^t,r=65535^o,n=65535^(e|t),s=e&(t^65535),i=o|r>>1,a=o>>1^o,l=n^(n>>1^r&s>>1),c=s^(o&n>>1^s>>1);return o=i&i>>2^a&a>>2,r=i&a>>2^a&(i^a)>>2,n=l^(i&l>>2^a&c>>2),s=c^(a&l>>2^(i^a)&c>>2),i=o&o>>4^r&r>>4,a=o&r>>4^r&(o^r)>>4,l=n^(o&n>>4^r&s>>4),c=s^(r&n>>4^(o^r)&s>>4),n=l^(i&l>>8^a&c>>8),s=c^(a&l>>8^(i^a)&c>>8),n^=n>>1,s^=s>>1,o=e^t,r=s|65535^(o|n),o=(o|o<<8)&16711935,o=(o|o<<4)&252645135,o=(o|o<<2)&858993459,o=(o|o<<1)&1431655765,r=(r|r<<8)&16711935,r=(r|r<<4)&252645135,r=(r|r<<2)&858993459,r=(r|r<<1)&1431655765,((r<<1|o)>>>0)-2147483648}var u2=class{constructor(){J(this,"flatbush",null);J(this,"entries",[])}clear(){this.flatbush=null,this.entries=[]}insert(t){this.entries.push(t)}finish(){if(this.entries.length===0)this.flatbush=null;else{this.flatbush=new cR(this.entries.length);for(let t of this.entries)this.flatbush.add(t.minX,t.minY,t.maxX,t.maxY);this.flatbush.finish()}}search(t){return this.flatbush?.search(t.minX,t.minY,t.maxX,t.maxY).map(o=>this.entries[o])??[]}};function Q2e({model:e,offsetY:t}){let o=(0,p2.useRef)(null);o.current??(o.current=new u2);let r=o.current,[n,s]=(0,p2.useState)();function i(c){let u=c.nativeEvent.offsetX,p=c.nativeEvent.offsetY+t,f=r.search({minX:u,maxX:u+1,minY:p,maxY:p+1});return f.find(d=>!d.branch)??f[0]}function a(c){let u=i(c);s(u?{...u,clientX:c.clientX,clientY:c.clientY}:void 0),e.setHoveredTreeNode(u?.id),e.setMousePos(void 0,u&&!u.branch?e.rowNamesSet.get(u.name):void 0)}function l(){s(void 0),e.setHoveredTreeNode(void 0),e.setMousePos(void 0,void 0)}return{clickMap:r,hovered:n,hitTest:i,onMouseMove:a,onMouseLeave:l}}var $mt=$t()(e=>({tooltip:{position:"fixed",pointerEvents:"none",zIndex:1e4,backgroundColor:e.palette.grey[700],color:e.palette.common.white,padding:"4px 8px",borderRadius:4,fontSize:12,whiteSpace:"nowrap",maxWidth:300,overflow:"hidden",textOverflow:"ellipsis"},hover:{position:"absolute",pointerEvents:"none",zIndex:100,background:"rgba(0,0,0,0.1)"}})),Wmt=$e(function({model:e,offsetY:t}){let{classes:o}=$mt(),r=Zt(),[n,s]=(0,Ap.useState)(),[i,a]=(0,Ap.useState)(),{clickMap:l,hovered:c,hitTest:u,onMouseMove:p,onMouseLeave:f}=Q2e({model:e,offsetY:t}),{treeAreaWidth:d,blockSize:g,highResScaleFactor:y}=e,b=d+a2,h=g,A=b*y,x=h*y,C=nu({draw:P=>{P.resetTransform(),P.clearRect(0,0,A,x),l2({ctx:P,model:e,offsetY:t,clickMap:l,theme:r})},width:A,height:x,deps:[e,l,t,r]});return Ap.default.createElement(Ap.default.Fragment,null,n?Ap.default.createElement(R2e,{node:n,model:e,onClose:()=>{s(void 0)}}):null,i?Ap.default.createElement(O2e,{node:i,model:e,onClose:()=>{a(void 0)}}):null,Ap.default.createElement("canvas",{ref:C,width:A,height:x,style:{...{width:b,height:h,top:t,left:0,position:"absolute"},cursor:c?"pointer":"default"},onMouseMove:P=>{p(P)},onMouseLeave:()=>{f()},onClick:P=>{let E=u(P);if(E){let M={x:P.clientX,y:P.clientY,id:E.id,name:E.name};E.branch?s(M):a(M)}}}),c&&!c.branch?Ap.default.createElement("div",{className:o.hover,style:{left:c.minX,top:c.minY,width:c.maxX-c.minX,height:c.maxY-c.minY}}):null,c?(0,H2e.createPortal)(Ap.default.createElement("div",{className:o.tooltip,style:{left:c.clientX+12,top:c.clientY+12}},c.name),document.body):null)}),j2e=Wmt;c2();var qmt=$e(function({model:e}){let t=(0,Nm.useRef)(null),{treeWidth:o,height:r,blocksY:n,treeAreaWidth:s,scrollY:i}=e,a=(0,Nm.useCallback)(p=>{e.doScrollY(p)},[e]),{onMouseDown:l,onMouseUp:c}=wv({ref:t,onScrollY:a}),u=nu({draw:p=>{if(wg(e)){let{rowHeight:f,treeAreaWidth:d,height:g,scrollY:y,mouseRow:b,referenceRowIndex:h,hoveredRowIndices:A}=e;p.resetTransform(),p.clearRect(0,0,d,g);let x=C=>{p.fillRect(0,C*f+y,d,f)};h!==void 0&&(p.fillStyle=n2,x(h)),p.fillStyle=v2e;for(let C of A)x(C);b!==void 0&&b!==h&&!A.includes(b)&&x(b)}},width:s,height:r,deps:[e]});return Nm.default.createElement("div",{ref:t,onMouseDown:l,onMouseUp:c,onMouseLeave:p=>{p.preventDefault()},style:{height:r,position:"relative",width:o+a2}},Nm.default.createElement("div",{style:{position:"absolute",top:0,left:0,transform:`translateY(${i}px)`,willChange:"transform"}},n.map(p=>Nm.default.createElement(j2e,{key:p,model:e,offsetY:p}))),Nm.default.createElement("canvas",{ref:u,width:s,height:r,style:{position:"absolute",top:0,left:0,width:s,height:r,zIndex:1e3,pointerEvents:"none"}}))}),U2e=qmt;var Ymt=$e(function({model:e}){let{treeAreaWidth:t}=e;return X7.default.createElement("div",{style:{overflow:"hidden",flexShrink:0,width:t}},X7.default.createElement(U2e,{model:e}))}),$2e=Ymt;var W2e=w(V(),1);eo();var Kmt=$e(({model:e})=>{let{treeAreaWidth:t,resizeHandleWidth:o}=e;return W2e.default.createElement("div",{style:{flexShrink:0,width:t+o}})}),q2e=Kmt;var Xmt=$e(function({model:e}){let{showHorizontalScrollbar:t}=e;return gr.default.createElement("div",{style:{display:"flex"}},gr.default.createElement(q2e,{model:e}),t?gr.default.createElement(aFe,{model:e}):null)}),Jmt=$e(function({model:e}){let{mouseCol:t,mouseClickCol:o,colWidth:r,scrollX:n,treeAreaWidth:s,resizeHandleWidth:i,totalTrackAreaHeight:a,msaCanvasWidth:l}=e,c=[{col:t,color:s2},{col:o,color:i2}];return gr.default.createElement("div",{style:{position:"absolute",left:s+i,top:0,width:l,height:a,overflow:"hidden",pointerEvents:"none"}},c.map(({col:u,color:p})=>u===void 0?null:gr.default.createElement("div",{key:p,style:{position:"absolute",left:u*r+n,top:0,width:r,height:a,backgroundColor:p,zIndex:100}})))}),Zmt=$e(function({model:e}){let{turnedOnTracks:t}=e;return t.length===0?null:gr.default.createElement("div",{style:{position:"relative"}},gr.default.createElement(Jmt,{model:e}),t.map(o=>gr.default.createElement(iSe,{key:o.model.id,model:e,track:o})))}),egt=$e(function({model:e}){let{showVerticalScrollbar:t}=e;return gr.default.createElement("div",{style:{display:"flex"}},gr.default.createElement($2e,{model:e}),gr.default.createElement(Xve,{model:e}),gr.default.createElement(I2e,{model:e}),t?gr.default.createElement(lSe,{model:e}):null)}),tgt=$e(function({model:e}){return gr.default.createElement("div",{style:{position:"relative"}},gr.default.createElement(Xmt,{model:e}),gr.default.createElement(Zmt,{model:e}),gr.default.createElement(egt,{model:e}))}),ogt=$e(function({model:e}){let{height:t,viewInitialized:o,DialogComponent:r,DialogProps:n}=e;return gr.default.createElement("div",null,o?gr.default.createElement(gr.default.Fragment,null,gr.default.createElement("div",{style:{height:t,overflow:"hidden"}},gr.default.createElement(eFe,{model:e}),gr.default.createElement(tgt,{model:e})),gr.default.createElement(Jve,{model:e}),r?gr.default.createElement(gr.Suspense,{fallback:null},gr.default.createElement(r,{...n})):null):null)}),Y2e=ogt;var Gr=w(V(),1);Ja();Gt();eo();var uR=w(V(),1);Gt();eo();var K2e=`CLUSTAL O(1.2.3) multiple sequence alignment
386
386
  UniProt/Swiss-Prot|P26898|IL2RA_SHEEP MEPSLLMWRFFVFIVVPGCVTEACHDDPPSLRNA----------MFKVLRYE----VGTM
387
387
  UniProt/Swiss-Prot|P01590|IL2RA_MOUSE MEPRLLMLGFLSLTIVPSCRAELCLYDPPEVPNA----------TFKALSYK----NGTI
388
388
  UniProt/Swiss-Prot|P41690|IL2RA_FELCA MEPSLLLWGILTFVVVHGHVTELCDENPPDIQHA----------TFKALTYK----TGTM