react-msaview 6.1.1 → 6.2.0

package/dist/{renderTestEnv.js → headlessRenderEnv.js}

@@ -1,6 +1,6 @@
 /**
- * jsdom shims for the SVG-export tests. Test-only -- nothing in the viewer
- * imports this.
+ * DOM shims for driving `renderToSvg` outside a browser -- the SVG-export
+ * tests, the README figure generator, and react-msaview-cli all need them.
  *
  * jsdom implements neither DOMMatrix nor a canvas 2D context, and
  * `@jbrowse/svgcanvas` needs both: it tracks the current transform as a real
@@ -12,7 +12,7 @@
  * leaves the rest undefined -- every emitted transform then carries `NaN` in its
  * x components, which no assertion on a drawn x-position can survive.
  */
-export class TestDOMMatrix {
+export class HeadlessDOMMatrix {
     a;
     b;
     c;
@@ -29,7 +29,7 @@ export class TestDOMMatrix {
         this.f = f;
     }
     multiply(o) {
-        return new TestDOMMatrix([
+        return new HeadlessDOMMatrix([
             this.a * o.a + this.c * o.b,
             this.b * o.a + this.d * o.b,
             this.a * o.c + this.c * o.d,
@@ -39,13 +39,13 @@ export class TestDOMMatrix {
         ]);
     }
     translate(x, y = 0) {
-        return this.multiply(new TestDOMMatrix([1, 0, 0, 1, x, y]));
+        return this.multiply(new HeadlessDOMMatrix([1, 0, 0, 1, x, y]));
     }
     scale(x, y = x) {
-        return this.multiply(new TestDOMMatrix([x, 0, 0, y, 0, 0]));
+        return this.multiply(new HeadlessDOMMatrix([x, 0, 0, y, 0, 0]));
     }
 }
-export class TestDOMPoint {
+export class HeadlessDOMPoint {
     x;
     y;
     constructor(x = 0, y = 0) {
@@ -53,22 +53,26 @@ export class TestDOMPoint {
         this.y = y;
     }
     matrixTransform(m) {
-        return new TestDOMPoint(m.a * this.x + m.c * this.y + m.e, m.b * this.x + m.d * this.y + m.f);
+        return new HeadlessDOMPoint(m.a * this.x + m.c * this.y + m.e, m.b * this.x + m.d * this.y + m.f);
     }
 }
 /**
- * Install the shims. Call from `beforeAll` in any test that exports SVG.
+ * Install the shims, into `globalThis` by default. A Node caller that builds
+ * its own jsdom passes that window instead, because Node has no global
+ * HTMLCanvasElement to patch.
  *
  * `measureText` reports 0.6em per character, close enough to a real sans-serif
- * average for layout assertions and, more usefully, exactly predictable: a test
- * can compute the width a renderer will see rather than hardcoding a number
+ * average for layout and, more usefully, exactly predictable: a caller can
+ * compute the width a renderer will see rather than hardcoding a number
  * measured from one machine's fonts.
  */
-export function installRenderTestEnv() {
+export function installHeadlessRenderEnv(win = globalThis) {
     const g = globalThis;
-    g.DOMMatrix = TestDOMMatrix;
-    g.DOMPoint = TestDOMPoint;
-    HTMLCanvasElement.prototype.getContext = function () {
+    g.DOMMatrix = HeadlessDOMMatrix;
+    g.DOMPoint = HeadlessDOMPoint;
+    const canvas = win
+        .HTMLCanvasElement;
+    canvas.prototype.getContext = function () {
         let font = '10px sans-serif';
         return {
             get font() {
@@ -78,11 +82,11 @@ export function installRenderTestEnv() {
                 font = v;
             },
             measureText: (t) => ({
-                width: t.length * (Number.parseFloat(font) || 10) * 0.6,
+                width: t.length * (Number.parseFloat(font) || 10) * CHAR_WIDTH_RATIO,
             }),
         };
     };
 }
 /** the per-character width factor `measureText` above reports */
-export const TEST_CHAR_WIDTH_RATIO = 0.6;
-//# sourceMappingURL=renderTestEnv.js.map
+export const CHAR_WIDTH_RATIO = 0.6;
+//# sourceMappingURL=headlessRenderEnv.js.map

package/dist/headlessRenderEnv.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -1,4 +1,5 @@
 export { renderToSvg } from './renderToSvg.tsx';
+export { CHAR_WIDTH_RATIO, installHeadlessRenderEnv, } from './headlessRenderEnv.ts';
 export { default as MSAView } from './components/Loading.tsx';
 export { default as MSAViewer } from './components/MSAViewer.tsx';
 export { type MsaViewModel, default as MSAModelF } from './model.ts';

package/dist/index.js

@@ -6,6 +6,9 @@
 // members they rely on (e.g. mouseCol/setMousePos, setHighlightedColumns,
 // seqPosToVisibleCol/visibleColToSeqPos) are flagged inline in model.ts.
 export { renderToSvg } from './renderToSvg.js';
+// renderToSvg outside a browser needs DOM bits jsdom omits; react-msaview-cli
+// and the README figure generator both drive it that way
+export { CHAR_WIDTH_RATIO, installHeadlessRenderEnv, } from './headlessRenderEnv.js';
 export { default as MSAView } from './components/Loading.js';
 export { default as MSAViewer } from './components/MSAViewer.js';
 export { default as MSAModelF } from './model.js';

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,gFAAgF;AAChF,yDAAyD;AACzD,+EAA+E;AAC/E,6EAA6E;AAC7E,gFAAgF;AAChF,0EAA0E;AAC1E,yEAAyE;AACzE,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAmB,CAAA;AAC/C,8EAA8E;AAC9E,yDAAyD;AACzD,OAAO,EACL,gBAAgB,EAChB,wBAAwB,GACzB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAAE,OAAO,IAAI,OAAO,EAAE,MAAM,yBAA0B,CAAA;AAC7D,OAAO,EAAE,OAAO,IAAI,SAAS,EAAE,MAAM,2BAA4B,CAAA;AACjE,OAAO,EAAqB,OAAO,IAAI,SAAS,EAAE,MAAM,YAAY,CAAA"}

package/dist/renderToSvg.js

@@ -2,9 +2,12 @@
 import React from 'react';
 import { renderToStaticMarkup } from '@jbrowse/core/util';
 import { when } from 'mobx';
+import { visibleRowRange } from './components/getVisibleLeaves.js';
 import MinimapSVG from './components/minimap/MinimapSVG.js';
+import { rasterImageHref, rasterSupported } from './components/msa/msaRaster.js';
 import { renderBoxFeatureCanvasBlock } from './components/msa/renderBoxFeatureCanvasBlock.js';
 import { renderMSABlock } from './components/msa/renderMSABlock.js';
+import { visibleColRange } from './components/msa/visibleColRange.js';
 import { renderAllTracks } from './components/tracks/drawTracks.js';
 import { renderTreeCanvas } from './components/tree/renderTreeCanvas.js';
 import { colorContrast } from './util.js';
@@ -15,26 +18,35 @@ const LEGEND_ROW_H = 16;
 const LEGEND_SWATCH = 12;
 const LEGEND_FONT = 12;
 const LEGEND_CHAR_W = 7;
+const LEGEND_MAX_W = 360;
+const LEGEND_TEXT_X = LEGEND_PAD + LEGEND_SWATCH + 6;
 function getLegendWidth(model) {
-    const names = model.visibleDomainTypes.map(d => d.name);
-    const maxLen = Math.max(0, ...names.map(n => n.length));
-    const w = LEGEND_PAD * 2 + LEGEND_SWATCH + 6 + maxLen * LEGEND_CHAR_W;
-    return Math.min(360, Math.max(120, w));
+    const maxLen = model.visibleDomainTypes.reduce((a, d) => Math.max(a, d.name.length), 0);
+    const w = LEGEND_TEXT_X + LEGEND_PAD + maxLen * LEGEND_CHAR_W;
+    return Math.min(LEGEND_MAX_W, Math.max(120, w));
 }
 function getLayout(model, opts) {
-    const { width, height, scrollX, scrollY, totalWidth, totalHeight, treeAreaWidth, totalTrackAreaHeight, minimapHeight, } = model;
+    const { scrollX, scrollY, totalWidth, totalHeight, treeAreaWidth, totalTrackAreaHeight, minimapHeight, msaAreaHeight, msaCanvasWidth, showHorizontalScrollbar, } = model;
     const trackHeight = opts.includeTracks ? totalTrackAreaHeight : 0;
     // the minimap reflects the live viewport scroll position, so it's only
-    // meaningful for a viewport export, never for the entire alignment
-    const includeMinimap = opts.exportType === 'viewport' && !!opts.includeMinimap;
+    // meaningful for a viewport export, never for the entire alignment -- and
+    // only when the live view shows one at all, since a minimap over an alignment
+    // that already fits marks a viewport wider than the bar
+    const includeMinimap = opts.exportType === 'viewport' &&
+        !!opts.includeMinimap &&
+        showHorizontalScrollbar;
     const legendWidth = model.actuallyShowDomains && model.visibleDomainTypes.length > 0
         ? getLegendWidth(model)
         : 0;
-    // width stays content-only (the renderers derive msaAreaWidth from it); the
-    // legend occupies an extra column added at the svg root in MsaSvg
+    // width stays content-only; the legend occupies an extra column added at the
+    // svg root in MsaSvg. The viewport export takes the alignment canvas's own
+    // size rather than the widget's -- the widget box also covers the header, the
+    // resize handle and the scrollbars, and rendering that box exports rows and
+    // columns the scrollbars hide on screen
     return opts.exportType === 'entire'
         ? {
             width: totalWidth + treeAreaWidth,
+            msaAreaWidth: totalWidth,
             height: totalHeight + trackHeight,
             contentHeight: totalHeight,
             trackHeight,
@@ -44,9 +56,10 @@ function getLayout(model, opts) {
             legendWidth,
         }
         : {
-            width,
-            height: height + (includeMinimap ? minimapHeight : 0) + trackHeight,
-            contentHeight: height,
+            width: msaCanvasWidth + treeAreaWidth,
+            msaAreaWidth: msaCanvasWidth,
+            height: msaAreaHeight + (includeMinimap ? minimapHeight : 0) + trackHeight,
+            contentHeight: msaAreaHeight,
             trackHeight,
             offsetX: -scrollX,
             offsetY: -scrollY,
@@ -64,38 +77,43 @@ function MsaSvg({ model, theme, Context, layout, }) {
     const { treeAreaWidth, minimapHeight } = model;
     const totalWidth = width + legendWidth;
     const legendTop = includeMinimap ? minimapHeight : 0;
+    const contrastScheme = colorContrast(model.colorScheme, theme);
+    const props = { Context, model, theme, layout, contrastScheme };
     const body = (React.createElement(React.Fragment, null,
-        trackHeight > 0 ? (React.createElement(TrackRendering, { Context: Context, model: model, theme: theme, layout: layout })) : null,
+        trackHeight > 0 ? React.createElement(TrackRendering, { ...props }) : null,
         React.createElement("g", { transform: trackHeight > 0 ? `translate(0 ${trackHeight})` : undefined },
-            React.createElement(CoreRendering, { Context: Context, model: model, theme: theme, layout: layout }))));
+            React.createElement(CoreRendering, { ...props }))));
     return (React.createElement("svg", { width: totalWidth, height: height, xmlns: "http://www.w3.org/2000/svg", xmlnsXlink: "http://www.w3.org/1999/xlink", viewBox: `0 0 ${totalWidth} ${height}` },
-        React.createElement("rect", { width: "100%", height: "100%", fill: "white" }),
+        React.createElement("rect", { width: "100%", height: "100%", fill: theme.palette.background.default }),
         includeMinimap ? (React.createElement(React.Fragment, null,
             React.createElement("g", { transform: `translate(${treeAreaWidth} 0)` },
-                React.createElement(MinimapSVG, { model: model, width: width - treeAreaWidth })),
+                React.createElement(MinimapSVG, { model: model, theme: theme })),
             React.createElement("g", { transform: `translate(0 ${minimapHeight})` }, body))) : (body),
         legendWidth > 0 ? (React.createElement("g", { transform: `translate(${width} ${legendTop})` },
-            React.createElement(LegendSVG, { model: model, width: legendWidth }))) : null));
+            React.createElement(LegendSVG, { model: model, theme: theme, width: legendWidth }))) : null));
 }
 // the domain color key drawn as a reserved column to the right of the
 // alignment, mirroring the on-screen AnnotationLegend overlay
-function LegendSVG({ model, width }) {
+function LegendSVG({ model, theme, width, }) {
     const { visibleDomainTypes, fillPalette, strokePalette } = model;
     const boxHeight = LEGEND_PAD * 2 + visibleDomainTypes.length * LEGEND_ROW_H;
+    // the column is capped at LEGEND_MAX_W, so a name too long for it has to be
+    // clipped here -- text that overruns the reserved width runs off the figure
+    const maxChars = Math.floor((width - LEGEND_TEXT_X - LEGEND_PAD) / LEGEND_CHAR_W);
     return (React.createElement("g", null,
-        React.createElement("rect", { x: 0, y: 0, width: width - 4, height: boxHeight, fill: "white", stroke: "#ccc", rx: 2 }),
+        React.createElement("rect", { x: 0, y: 0, width: width - 4, height: boxHeight, fill: theme.palette.background.paper, stroke: "#ccc", rx: 2 }),
         visibleDomainTypes.map((d, i) => {
             const y = LEGEND_PAD + i * LEGEND_ROW_H;
             return (React.createElement("g", { key: d.accession },
                 React.createElement("rect", { x: LEGEND_PAD, y: y, width: LEGEND_SWATCH, height: LEGEND_SWATCH, fill: fillPalette[d.accession], stroke: strokePalette[d.accession] }),
-                React.createElement("text", { x: LEGEND_PAD + LEGEND_SWATCH + 6, y: y + LEGEND_SWATCH - 1, fontSize: LEGEND_FONT }, d.name)));
+                React.createElement("text", { x: LEGEND_TEXT_X, y: y + LEGEND_SWATCH - 1, fontSize: LEGEND_FONT, fill: theme.palette.text.primary }, d.name.length > maxChars
+                    ? `${d.name.slice(0, Math.max(1, maxChars - 1))}…`
+                    : d.name)));
         })));
 }
-function CoreRendering({ model, theme, layout, Context, }) {
-    const { contentHeight, offsetX, offsetY, width } = layout;
-    const { treeAreaWidth, colorScheme, id } = model;
-    const msaAreaWidth = width - treeAreaWidth;
-    const contrastScheme = colorContrast(colorScheme, theme);
+function CoreRendering({ model, theme, layout, Context, contrastScheme, }) {
+    const { contentHeight, offsetX, offsetY, msaAreaWidth } = layout;
+    const { treeAreaWidth, id } = model;
     const treeCtx = new Context(treeAreaWidth, contentHeight);
     renderTreeCanvas({
         model,
@@ -105,6 +123,7 @@ function CoreRendering({ model, theme, layout, Context, }) {
         blockSizeYOverride: contentHeight,
         highResScaleFactorOverride: 1,
     });
+    const raster = rasterBackground({ model, theme, layout });
     const msaCtx = new Context(msaAreaWidth, contentHeight);
     renderBoxFeatureCanvasBlock({
         model,
@@ -127,16 +146,54 @@ function CoreRendering({ model, theme, layout, Context, }) {
         blockSizeXOverride: msaAreaWidth,
         blockSizeYOverride: contentHeight,
         highResScaleFactorOverride: 1,
+        rasterTiles: !!raster,
     });
     return (React.createElement(React.Fragment, null,
         React.createElement(ClipGroup, { clipId: `tree-${id}`, width: treeAreaWidth, height: contentHeight, ctx: treeCtx }),
-        React.createElement(ClipGroup, { clipId: `msa-${id}`, width: msaAreaWidth, height: contentHeight, transform: `translate(${treeAreaWidth} 0)`, ctx: msaCtx })));
+        React.createElement(ClipGroup, { clipId: `msa-${id}`, width: msaAreaWidth, height: contentHeight, transform: `translate(${treeAreaWidth} 0)`, ctx: msaCtx, underlay: raster })));
 }
-function TrackRendering({ model, theme, layout, Context, }) {
-    const { trackHeight, offsetX, width } = layout;
-    const { treeAreaWidth, colorScheme, id } = model;
-    const msaAreaWidth = width - treeAreaWidth;
-    const contrastScheme = colorContrast(colorScheme, theme);
+/**
+ * The alignment background as a single <image>, on the same terms the live
+ * canvas uses it: no domain overlay painting its own boxes, background coloring
+ * on, and a canvas we can actually read back.
+ *
+ * One node replaces the <rect>-per-cell the vector path emits, which is what
+ * lets an export of a real alignment finish at all. The image is one pixel per
+ * cell drawn across the cells' own rectangle, so it upscales by whole cells --
+ * image-rendering keeps those edges hard rather than smearing them, making it
+ * pixel-for-pixel what the rects drew.
+ */
+function rasterBackground({ model, theme, layout, }) {
+    const { contentHeight, offsetX, offsetY, msaAreaWidth } = layout;
+    const { colWidth, rowHeight, actuallyShowDomains, bgColor } = model;
+    if (actuallyShowDomains || !bgColor || !rasterSupported()) {
+        return undefined;
+    }
+    const { xStart, xEnd } = visibleColRange({
+        offsetX,
+        blockWidth: msaAreaWidth,
+        colWidth,
+    });
+    const { yStart, yEnd } = visibleRowRange({
+        model,
+        offsetY,
+        blockSizeY: contentHeight,
+    });
+    const numCols = Math.min(xEnd, model.numColumns) - xStart;
+    const numRows = Math.min(yEnd, model.leaves.length) - yStart;
+    const href = rasterImageHref({
+        model,
+        theme,
+        col0: xStart,
+        row0: yStart,
+        numCols,
+        numRows,
+    });
+    return href ? (React.createElement("image", { href: href, x: xStart * colWidth - offsetX, y: yStart * rowHeight - offsetY, width: numCols * colWidth, height: numRows * rowHeight, imageRendering: "pixelated", preserveAspectRatio: "none" })) : undefined;
+}
+function TrackRendering({ model, theme, layout, Context, contrastScheme, }) {
+    const { trackHeight, offsetX, msaAreaWidth } = layout;
+    const { treeAreaWidth, id } = model;
     const ctx = new Context(msaAreaWidth, trackHeight);
     renderAllTracks({
         model,
@@ -147,16 +204,38 @@ function TrackRendering({ model, theme, layout, Context, }) {
         blockSizeXOverride: msaAreaWidth,
         highResScaleFactorOverride: 1,
     });
-    return (React.createElement("g", { transform: `translate(${treeAreaWidth} 0)` },
-        React.createElement(ClipGroup, { clipId: `tracks-${id}`, width: msaAreaWidth, height: trackHeight, ctx: ctx })));
+    return (React.createElement(React.Fragment, null,
+        React.createElement(TrackLabelsSVG, { model: model, theme: theme }),
+        React.createElement("g", { transform: `translate(${treeAreaWidth} 0)` },
+            React.createElement(ClipGroup, { clipId: `tracks-${id}`, width: msaAreaWidth, height: trackHeight, ctx: ctx }))));
+}
+// Each track's name in the tree-width column beside it, where the live view puts
+// it (see TrackLabel). Without these the figure has an unlabeled bar chart and
+// an unlabeled logo, and nothing says which is which.
+function TrackLabelsSVG({ model, theme, }) {
+    const { turnedOnTracks, treeAreaWidth, fontSize, drawLabels } = model;
+    if (!drawLabels) {
+        return null;
+    }
+    let y = 0;
+    return (React.createElement(React.Fragment, null, turnedOnTracks.map(track => {
+        const { id, name, height } = track.model;
+        const size = Math.min(height, fontSize);
+        const baseline = y + height / 2 + size / 3;
+        y += height;
+        return size < 5 ? null : (React.createElement("text", { key: id, x: treeAreaWidth - 4, y: baseline, fontSize: size, textAnchor: "end", fill: theme.palette.text.primary }, name));
+    })));
 }
 // Clips a svgcanvas Context to its box and injects its markup verbatim (it is
-// already serialized SVG, not React).
-function ClipGroup({ clipId, width, height, transform, ctx, }) {
+// already serialized SVG, not React). `underlay` draws beneath that markup,
+// inside the same clip, for the parts of a layer React emits directly.
+function ClipGroup({ clipId, width, height, transform, ctx, underlay, }) {
     return (React.createElement(React.Fragment, null,
         React.createElement("defs", null,
             React.createElement("clipPath", { id: clipId },
                 React.createElement("rect", { x: 0, y: 0, width: width, height: height }))),
-        React.createElement("g", { clipPath: `url(#${clipId})`, transform: transform, dangerouslySetInnerHTML: { __html: ctx.getSvg().innerHTML } })));
+        React.createElement("g", { clipPath: `url(#${clipId})`, transform: transform },
+            underlay,
+            React.createElement("g", { dangerouslySetInnerHTML: { __html: ctx.getSvg().innerHTML } }))));
 }
 //# sourceMappingURL=renderToSvg.js.map

package/dist/renderToSvg.js.map

@@ -1 +1 @@
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package/dist/version.d.ts

@@ -1 +1 @@
-export declare const version = "6.1.1";
+export declare const version = "6.2.0";

package/dist/version.js

@@ -1,2 +1,2 @@
-export const version = '6.1.1';
+export const version = '6.2.0';
 //# sourceMappingURL=version.js.map

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "react-msaview",
   "author": "Colin",
-  "version": "6.1.1",
+  "version": "6.2.0",
   "license": "MIT",
   "type": "module",
   "repository": {
@@ -43,8 +43,8 @@
     "@gmod/newick": "^1.0.0",
     "colord": "^2.9.3",
     "flatbush": "^4.6.2",
-    "@jbrowse/svgcanvas": "6.1.1",
-    "msa-parsers": "6.1.1"
+    "@jbrowse/svgcanvas": "6.2.0",
+    "msa-parsers": "6.2.0"
   },
   "scripts": {
     "clean": "rimraf dist bundle",

package/src/components/dialogs/ExportSVGDialog.tsx

@@ -4,6 +4,7 @@ import { Dialog, ErrorMessage } from '@jbrowse/core/ui'
 import {
   Alert,
   Button,
+  CircularProgress,
   DialogActions,
   DialogContent,
   FormControl,
@@ -19,6 +20,16 @@ import Checkbox2 from '../Checkbox2.tsx'
 
 import type { MsaViewModel } from '../../model.ts'
 
+// Run after the browser has painted. A requestAnimationFrame callback still
+// runs *before* the frame it was queued for, so one alone hands the main thread
+// to the render with the spinner not yet on screen; the second fires once that
+// frame is out.
+function afterPaint(fn: () => void) {
+  requestAnimationFrame(() => {
+    requestAnimationFrame(fn)
+  })
+}
+
 export default function ExportSVGDialog({
   model,
   onClose,
@@ -32,6 +43,7 @@ export default function ExportSVGDialog({
     'viewport',
   )
   const [error, setError] = useState<unknown>()
+  const [exporting, setExporting] = useState(false)
   const theme = useTheme()
   const {
     totalWidth,
@@ -39,12 +51,20 @@ export default function ExportSVGDialog({
     treeAreaWidth,
     turnedOnTracks,
     totalTrackAreaHeight,
+    numColumns,
+    leaves,
+    showMsaLetters,
   } = model
   const hasTracks = turnedOnTracks.length > 0
   const entireWidth = totalWidth + treeAreaWidth
   const entireHeight = totalHeight + (includeTracks ? totalTrackAreaHeight : 0)
-  const isLargeExport =
-    exportType === 'entire' && (entireWidth > 10000 || entireHeight > 10000)
+  // the background is one raster image whatever its size, so what the figure
+  // actually costs is its residue letters: each is an svg element of its own.
+  // Past roughly this many the export runs to tens of seconds and can exhaust
+  // the tab's memory outright
+  const glyphs =
+    showMsaLetters && exportType === 'entire' ? numColumns * leaves.length : 0
+  const isLargeExport = glyphs > 100_000
   return (
     <Dialog
       onClose={() => {
@@ -100,8 +120,11 @@ export default function ExportSVGDialog({
         </div>
         {isLargeExport ? (
           <Alert severity="warning" style={{ marginTop: 8 }}>
-            The entire MSA is very large ({Math.round(entireWidth)}x
-            {Math.round(entireHeight)} pixels). Export may be slow or fail.
+            The entire MSA is {Math.round(entireWidth)}x
+            {Math.round(entireHeight)} pixels and draws{' '}
+            {Math.round(glyphs / 1000)}k residue letters, each its own SVG
+            element. Export may be slow or fail — zooming out far enough to hide
+            the letters exports the same alignment as an image instead.
           </Alert>
         ) : null}
       </DialogContent>
@@ -109,25 +132,37 @@ export default function ExportSVGDialog({
         <Button
           variant="contained"
           color="primary"
+          // rendering runs on the main thread and a large figure holds it for
+          // seconds; without this the button stays live through the freeze and
+          // a second click starts a second export
+          disabled={exporting}
+          startIcon={
+            exporting ? <CircularProgress size={16} color="inherit" /> : null
+          }
           onClick={() => {
-            void model
-              .exportSVG({
-                theme,
-                includeMinimap:
-                  exportType === 'entire' ? false : includeMinimap,
-                includeTracks: hasTracks && includeTracks,
-                exportType,
-              })
-              .then(() => {
-                onClose()
-              })
-              .catch((e: unknown) => {
-                console.error(e)
-                setError(e)
-              })
+            setExporting(true)
+            afterPaint(() => {
+              void model
+                .exportSVG({
+                  theme,
+                  includeMinimap,
+                  includeTracks: hasTracks && includeTracks,
+                  exportType,
+                })
+                .then(() => {
+                  onClose()
+                })
+                .catch((e: unknown) => {
+                  console.error(e)
+                  setError(e)
+                })
+                .finally(() => {
+                  setExporting(false)
+                })
+            })
           }}
         >
-          Submit
+          {exporting ? 'Exporting…' : 'Submit'}
         </Button>
         <Button
           variant="contained"

package/src/components/getVisibleLeaves.ts

@@ -1,7 +1,28 @@
 import type { MsaViewModel } from '../model.ts'
 
-// The slice of leaves whose rows intersect a block of height blockSizeY at
-// vertical offset offsetY, padded by one row on each side.
+// The half-open range of rows [yStart, yEnd) whose leaves intersect a block of
+// height blockSizeY at vertical offset offsetY, padded by one row on each side.
+// Y-axis counterpart to visibleColRange.
+export function visibleRowRange({
+  model,
+  offsetY,
+  blockSizeY,
+}: {
+  model: MsaViewModel
+  offsetY: number
+  blockSizeY: number
+}) {
+  const { rowHeight } = model
+  return {
+    yStart: Math.max(0, Math.floor((offsetY - rowHeight) / rowHeight)),
+    yEnd: Math.max(
+      0,
+      Math.ceil((offsetY + blockSizeY + rowHeight) / rowHeight),
+    ),
+  }
+}
+
+// The leaves in that range.
 export function getVisibleLeaves({
   model,
   offsetY,
@@ -11,11 +32,6 @@ export function getVisibleLeaves({
   offsetY: number
   blockSizeY: number
 }) {
-  const { leaves, rowHeight } = model
-  const yStart = Math.max(0, Math.floor((offsetY - rowHeight) / rowHeight))
-  const yEnd = Math.max(
-    0,
-    Math.ceil((offsetY + blockSizeY + rowHeight) / rowHeight),
-  )
-  return leaves.slice(yStart, yEnd)
+  const { yStart, yEnd } = visibleRowRange({ model, offsetY, blockSizeY })
+  return model.leaves.slice(yStart, yEnd)
 }

package/src/components/minimap/Minimap.tsx

@@ -13,10 +13,7 @@ import type { MsaViewModel } from '../../model.ts'
 const Minimap = observer(function ({ model }: { model: MsaViewModel }) {
   const { minimapHeight, msaCanvasWidth, highResScaleFactor } = model
   const theme = useTheme()
-  const { unit, s, w, polygonHeight, polygonPoints } = getMinimapLayout(
-    model,
-    msaCanvasWidth,
-  )
+  const { unit, s, w, polygonHeight, polygonPoints } = getMinimapLayout(model)
 
   // the whole alignment, sampled down to the bar: it says where the conserved
   // blocks and the gappy stretches are, which is what a scroll aims at