react-msaview 6.0.0 → 6.1.0

package/dist/components/msa/MSACanvas.js

@@ -4,7 +4,7 @@ import { useWheelScroll } from '../../useWheelScroll.js';
 import Loading from './Loading.js';
 import MSACanvasBlock from './MSACanvasBlock.js';
 const MSACanvas = observer(function ({ model }) {
-    const { MSA, msaFilehandle, height, msaCanvasWidth, blocks2d, scrollZoom } = model;
+    const { MSA, msaFilehandle, height, msaCanvasWidth, blocks2d, scrollZoom, scrollX, scrollY, } = model;
     const ref = useRef(null);
     const onScrollX = useCallback((d) => {
         model.doScrollX(d);
@@ -29,7 +29,13 @@ const MSACanvas = observer(function ({ model }) {
             height,
             width: msaCanvasWidth,
             overflow: 'hidden',
-        } }, !MSA && !msaFilehandle ? null : MSA ? (blocks2d.map(([bx, by]) => (React.createElement(MSACanvasBlock, { key: `${bx}_${by}`, model: model, offsetX: bx, offsetY: by })))) : (React.createElement(Loading, null))));
+        } }, !MSA && !msaFilehandle ? null : MSA ? (React.createElement("div", { style: {
+            position: 'absolute',
+            top: 0,
+            left: 0,
+            transform: `translate(${scrollX}px, ${scrollY}px)`,
+            willChange: 'transform',
+        } }, blocks2d.map(([bx, by]) => (React.createElement(MSACanvasBlock, { key: `${bx}_${by}`, model: model, offsetX: bx, offsetY: by }))))) : (React.createElement(Loading, null))));
 });
 export default MSACanvas;
 //# sourceMappingURL=MSACanvas.js.map

package/dist/components/msa/MSACanvas.js.map

@@ -1 +1 @@
-{"version":3,"file":"MSACanvas.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;AACxD,OAAO,OAAO,MAAM,cAAe,CAAA;AACnC,OAAO,cAAc,MAAM,qBAAsB,CAAA;AAIjD,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,EAAE,GAAG,EAAE,aAAa,EAAE,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,UAAU,EAAE,GACxE,KAAK,CAAA;IACP,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,MAAM,GAAG,WAAW,CACxB,CAAC,WAAmB,EAAE,OAAe,EAAE,OAAe,EAAE,EAAE;QACxD,KAAK,CAAC,SAAS,CAAC,WAAW,EAAE,OAAO,EAAE,OAAO,CAAC,CAAA;IAChD,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,GAAG,cAAc,CAAC;QAChD,GAAG;QACH,SAAS;QACT,SAAS;QACT,MAAM;QACN,UAAU;KACX,CAAC,CAAA;IAEF,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBAKI,YAAY,EACxB,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,SAAS,EACpB,YAAY,EAAE,KAAK,CAAC,EAAE;YACpB,KAAK,CAAC,cAAc,EAAE,CAAA;QACxB,CAAC,EACD,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM;YACN,KAAK,EAAE,cAAc;YACrB,QAAQ,EAAE,QAAQ;SACnB,IAEA,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CACrC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CACzB,oBAAC,cAAc,IACb,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,EAClB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,EAAE,EACX,OAAO,EAAE,EAAE,GACX,CACH,CAAC,CACH,CAAC,CAAC,CAAC,CACF,oBAAC,OAAO,OAAG,CACZ,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}
+{"version":3,"file":"MSACanvas.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;AACxD,OAAO,OAAO,MAAM,cAAe,CAAA;AACnC,OAAO,cAAc,MAAM,qBAAsB,CAAA;AAIjD,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,EACJ,GAAG,EACH,aAAa,EACb,MAAM,EACN,cAAc,EACd,QAAQ,EACR,UAAU,EACV,OAAO,EACP,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,MAAM,GAAG,WAAW,CACxB,CAAC,WAAmB,EAAE,OAAe,EAAE,OAAe,EAAE,EAAE;QACxD,KAAK,CAAC,SAAS,CAAC,WAAW,EAAE,OAAO,EAAE,OAAO,CAAC,CAAA;IAChD,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,GAAG,cAAc,CAAC;QAChD,GAAG;QACH,SAAS;QACT,SAAS;QACT,MAAM;QACN,UAAU;KACX,CAAC,CAAA;IAEF,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBAKI,YAAY,EACxB,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,SAAS,EACpB,YAAY,EAAE,KAAK,CAAC,EAAE;YACpB,KAAK,CAAC,cAAc,EAAE,CAAA;QACxB,CAAC,EACD,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM;YACN,KAAK,EAAE,cAAc;YACrB,QAAQ,EAAE,QAAQ;SACnB,IAEA,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAGrC,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,GAAG,EAAE,CAAC;YACN,IAAI,EAAE,CAAC;YACP,SAAS,EAAE,aAAa,OAAO,OAAO,OAAO,KAAK;YAClD,UAAU,EAAE,WAAW;SACxB,IAEA,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CAC1B,oBAAC,cAAc,IACb,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,EAClB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,EAAE,EACX,OAAO,EAAE,EAAE,GACX,CACH,CAAC,CACE,CACP,CAAC,CAAC,CAAC,CACF,oBAAC,OAAO,OAAG,CACZ,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}

package/dist/components/msa/MSACanvasBlock.js

@@ -4,11 +4,12 @@ import { observer } from 'mobx-react';
 import { useCanvasAutorun } from '../../useCanvasAutorun.js';
 import { useColorContrast } from '../../useColorContrast.js';
 import ColumnStats from './ColumnStats.js';
+import { drawMsaRaster, rasterSupported } from './msaRaster.js';
 import { renderBoxFeatureCanvasBlock } from './renderBoxFeatureCanvasBlock.js';
 import { renderMSABlock } from './renderMSABlock.js';
 import { useMsaBlockMouse } from './useMsaBlockMouse.js';
 const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
-    const { scrollY, scrollX, colorScheme, blockSize, highResScaleFactor } = model;
+    const { colorScheme, blockSize, highResScaleFactor } = model;
     const { theme, contrastScheme } = useColorContrast(colorScheme);
     const { tooltipPoint, onMouseMove, onClick, onMouseLeave } = useMsaBlockMouse({
         model,
@@ -26,6 +27,13 @@ const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
                 offsetY,
                 model,
             });
+            // the alignment background comes from zoom-independent raster tiles; the
+            // domain overlay paints its own boxes instead, and letter-color mode has
+            // no background to paint
+            const rasterTiles = !model.actuallyShowDomains && model.bgColor && rasterSupported();
+            if (rasterTiles) {
+                drawMsaRaster({ ctx, model, theme, offsetX, offsetY });
+            }
             renderMSABlock({
                 ctx,
                 theme,
@@ -33,6 +41,7 @@ const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
                 offsetY,
                 contrastScheme,
                 model,
+                rasterTiles,
             });
         },
         width: canvasSize,
@@ -53,8 +62,8 @@ const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
                 onMouseLeave();
             }, width: canvasSize, height: canvasSize, style: {
                 position: 'absolute',
-                top: scrollY + offsetY,
-                left: scrollX + offsetX,
+                top: offsetY,
+                left: offsetX,
                 width: blockSize,
                 height: blockSize,
             } }),

package/dist/components/msa/MSACanvasBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MSACanvasBlock.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvasBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,WAAW,MAAM,8BAA8B,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,WAAW,MAAM,kBAAmB,CAAA;AAC3C,OAAO,EAAE,aAAa,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAA;AAC/D,OAAO,EAAE,2BAA2B,EAAE,MAAM,kCAAkC,CAAA;AAC9E,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AAIxD,MAAM,cAAc,GAAG,QAAQ,CAAC,UAAU,EACxC,KAAK,EACL,OAAO,EACP,OAAO,GAKR;IACC,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IAC5D,MAAM,EAAE,KAAK,EAAE,cAAc,EAAE,GAAG,gBAAgB,CAAC,WAAW,CAAC,CAAA;IAC/D,MAAM,EAAE,YAAY,EAAE,WAAW,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,gBAAgB,CAC3E;QACE,KAAK;QACL,OAAO;QACP,OAAO;KACR,CACF,CAAA;IAED,MAAM,UAAU,GAAG,SAAS,GAAG,kBAAkB,CAAA;IACjD,MAAM,GAAG,GAAG,gBAAgB,CAAC;QAC3B,IAAI,EAAE,GAAG,CAAC,EAAE;YACV,GAAG,CAAC,cAAc,EAAE,CAAA;YACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,UAAU,EAAE,UAAU,CAAC,CAAA;YAC3C,2BAA2B,CAAC;gBAC1B,GAAG;gBACH,OAAO;gBACP,OAAO;gBACP,KAAK;aACN,CAAC,CAAA;YACF,yEAAyE;YACzE,yEAAyE;YACzE,yBAAyB;YACzB,MAAM,WAAW,GACf,CAAC,KAAK,CAAC,mBAAmB,IAAI,KAAK,CAAC,OAAO,IAAI,eAAe,EAAE,CAAA;YAClE,IAAI,WAAW,EAAE,CAAC;gBAChB,aAAa,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,CAAC,CAAA;YACxD,CAAC;YACD,cAAc,CAAC;gBACb,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,OAAO;gBACP,cAAc;gBACd,KAAK;gBACL,WAAW;aACZ,CAAC,CAAA;QACJ,CAAC;QACD,KAAK,EAAE,UAAU;QACjB,MAAM,EAAE,UAAU;QAClB,IAAI,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,cAAc,CAAC;KACvD,CAAC,CAAA;IAEF,MAAM,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IAErE,OAAO,CACL;QACE,gCACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;oBAChB,WAAW,CAAC,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,CAAA;gBACjC,CAAC;YACH,CAAC,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;oBAChB,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,CAAA;gBAC7B,CAAC;YACH,CAAC,EACD,YAAY,EAAE,GAAG,EAAE;gBACjB,YAAY,EAAE,CAAA;YAChB,CAAC,EACD,KAAK,EAAE,UAAU,EACjB,MAAM,EAAE,UAAU,EAClB,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,OAAO;gBACZ,IAAI,EAAE,OAAO;gBACb,KAAK,EAAE,SAAS;gBAChB,MAAM,EAAE,SAAS;aAClB,GACD;QACD,YAAY,CAAC,CAAC,CAAC,CACd,oBAAC,WAAW,IACV,WAAW,EAAE,EAAE,CAAC,EAAE,YAAY,CAAC,CAAC,EAAE,CAAC,EAAE,YAAY,CAAC,CAAC,GAAG,EAAE,EAAE,IAEzD,gBAAgB,CAAC,CAAC,CAAC,CAClB;;YACc,gBAAgB,CAAC,OAAO,CAAC,MAAM;YAC1C,KAAK,CAAC,YAAY,KAAK,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI;;YAAI,GAAG;YACnD,gBAAgB,CAAC,OAAO,CAAC,MAAM,GAAG,EAAE;gBACnC,CAAC,CAAC,GAAG,gBAAgB,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK;gBAC/C,CAAC,CAAC,gBAAgB,CAAC,OAAO,CAC3B,CACJ,CAAC,CAAC,CAAC,CACF;YACG,gBAAgB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CACzB,6BAAK,GAAG,EAAE,GAAG,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,GAAG,EAAE;gBAC5C,+BAAI,CAAC,CAAC,IAAI,CAAK;;gBAAG,CAAC,CAAC,SAAS;;gBAAI,CAAC,CAAC,KAAK;;gBAAG,CAAC,CAAC,GAAG;gBAC/C,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CACf;oBACE,+BAAM;oBACL,CAAC,CAAC,WAAW,CACb,CACJ,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAC;YACD,eAAe,CAAC,CAAC,CAAC,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI,CACtD,CACJ,CACW,CACf,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}

package/dist/components/msa/msaRaster.d.ts

@@ -0,0 +1,63 @@
+import type { MsaViewModel } from '../../model.ts';
+import type { Theme } from '@mui/material';
+export declare const rasterTileSize = 512;
+type RasterCanvas = HTMLCanvasElement | OffscreenCanvas;
+export interface RasterSpec {
+    rowNames: string[];
+    columns: Map<string, string>;
+    relativeTo: string | undefined;
+    colorAt: (col: number, letter: string) => string | undefined;
+    bg: string;
+    hover: string;
+}
+/**
+ * CSS color string -> the packed pixel an ImageData holds for it. Painting a 1x1
+ * canvas and reading it back handles every form a color scheme can produce --
+ * hex, rgb(), hsl(), named -- without a parser of our own, and the cache means
+ * each distinct color is resolved once per session rather than once per cell.
+ */
+export declare function cssColorToPixel(css: string): number;
+/**
+ * Packs a rectangle of the alignment into one pixel per cell, in `rowNames`
+ * order, ready to hand to putImageData. Cells past the end of a row, and rows
+ * with no sequence at all, stay transparent -- what the per-cell tile painter
+ * also leaves behind.
+ *
+ * `colStep`/`rowStep` sample instead of covering, which is how the minimap fits
+ * a whole alignment into a 12px bar.
+ */
+export declare function rasterPixels({ spec, col0, row0, width, height, colStep, rowStep, toPixel, }: {
+    spec: RasterSpec;
+    col0: number;
+    row0: number;
+    width: number;
+    height: number;
+    colStep?: number;
+    rowStep?: number;
+    toPixel?: (css: string) => number;
+}): Uint32Array<ArrayBuffer>;
+export declare function rasterSupported(): boolean;
+/**
+ * Paints the alignment background of one MSA block from cached
+ * one-pixel-per-cell tiles. The tiles do not depend on the zoom level, so a zoom
+ * frame costs a handful of drawImage calls instead of a fillRect per visible
+ * cell -- which ran to 885ms per block at the minimum column width.
+ */
+export declare function drawMsaRaster({ ctx, model, theme, offsetX, offsetY, }: {
+    ctx: CanvasRenderingContext2D;
+    model: MsaViewModel;
+    theme: Theme;
+    offsetX: number;
+    offsetY: number;
+}): void;
+/**
+ * The whole alignment sampled down to a strip small enough to sit behind the
+ * minimap thumb, cached alongside the block tiles because it goes stale under
+ * exactly the same conditions.
+ */
+export declare function msaThumbnail({ model, theme, height, }: {
+    model: MsaViewModel;
+    theme: Theme;
+    height: number;
+}): RasterCanvas | undefined;
+export {};

package/dist/components/msa/msaRaster.js

@@ -0,0 +1,252 @@
+import { tileColorFn, tileColorTable } from './tileColor.js';
+// One raster tile holds this many cells on a side. A tile costs ~10ms to build
+// and ~1MB to hold, and is then drawn at any zoom for ~1ms, so the cache only
+// has to be large enough to cover a screen without thrashing.
+export const rasterTileSize = 512;
+const maxCachedTiles = 64;
+const maxThumbnailColumns = 2000;
+const maxColorCacheEntries = 4096;
+const littleEndian = new Uint8Array(new Uint32Array([1]).buffer)[0] === 1;
+function packRgba(r, g, b, a) {
+    return littleEndian
+        ? ((a << 24) | (b << 16) | (g << 8) | r) >>> 0
+        : ((r << 24) | (g << 16) | (b << 8) | a) >>> 0;
+}
+let scratch;
+const colorCache = new Map();
+/**
+ * CSS color string -> the packed pixel an ImageData holds for it. Painting a 1x1
+ * canvas and reading it back handles every form a color scheme can produce --
+ * hex, rgb(), hsl(), named -- without a parser of our own, and the cache means
+ * each distinct color is resolved once per session rather than once per cell.
+ */
+export function cssColorToPixel(css) {
+    const hit = colorCache.get(css);
+    if (hit !== undefined) {
+        return hit;
+    }
+    if (scratch === undefined) {
+        scratch = makeRasterCanvas(1, 1)?.ctx ?? null;
+    }
+    let packed = 0;
+    if (scratch) {
+        scratch.clearRect(0, 0, 1, 1);
+        scratch.fillStyle = css;
+        scratch.fillRect(0, 0, 1, 1);
+        const [r = 0, g = 0, b = 0, a = 0] = scratch.getImageData(0, 0, 1, 1).data;
+        packed = packRgba(r, g, b, a);
+    }
+    if (colorCache.size >= maxColorCacheEntries) {
+        colorCache.clear();
+    }
+    colorCache.set(css, packed);
+    return packed;
+}
+/**
+ * Packs a rectangle of the alignment into one pixel per cell, in `rowNames`
+ * order, ready to hand to putImageData. Cells past the end of a row, and rows
+ * with no sequence at all, stay transparent -- what the per-cell tile painter
+ * also leaves behind.
+ *
+ * `colStep`/`rowStep` sample instead of covering, which is how the minimap fits
+ * a whole alignment into a 12px bar.
+ */
+export function rasterPixels({ spec, col0, row0, width, height, colStep = 1, rowStep = 1, toPixel = cssColorToPixel, }) {
+    const { rowNames, columns, relativeTo, colorAt, bg, hover } = spec;
+    const out = new Uint32Array(width * height);
+    const bgPixel = toPixel(bg);
+    const hoverPixel = toPixel(hover);
+    const reference = relativeTo ? columns.get(relativeTo) : undefined;
+    for (let r = 0; r < height; r++) {
+        const name = rowNames[row0 + r * rowStep];
+        if (name === undefined) {
+            break;
+        }
+        const str = columns.get(name);
+        if (!str) {
+            continue;
+        }
+        const isReference = name === relativeTo;
+        const base = r * width;
+        for (let c = 0; c < width; c++) {
+            const col = col0 + c * colStep;
+            const letter = str[col];
+            if (letter === undefined) {
+                break;
+            }
+            if (reference && !isReference && letter === reference[col]) {
+                out[base + c] = hoverPixel;
+            }
+            else {
+                const color = colorAt(col, letter);
+                out[base + c] = color === undefined ? bgPixel : toPixel(color);
+            }
+        }
+    }
+    return out;
+}
+function makeRasterCanvas(width, height) {
+    if (typeof OffscreenCanvas !== 'undefined') {
+        const canvas = new OffscreenCanvas(width, height);
+        const ctx = canvas.getContext('2d', { willReadFrequently: true });
+        return ctx
+            ? { canvas: canvas, ctx: ctx }
+            : undefined;
+    }
+    if (typeof document === 'undefined') {
+        return undefined;
+    }
+    const canvas = document.createElement('canvas');
+    canvas.width = width;
+    canvas.height = height;
+    const ctx = canvas.getContext('2d', { willReadFrequently: true });
+    return ctx
+        ? { canvas: canvas, ctx: ctx }
+        : undefined;
+}
+function paint(pixels, width, height) {
+    const made = makeRasterCanvas(width, height);
+    if (!made) {
+        return undefined;
+    }
+    const image = made.ctx.createImageData(width, height);
+    new Uint32Array(image.data.buffer).set(pixels);
+    made.ctx.putImageData(image, 0, 0);
+    return made.canvas;
+}
+let supported;
+// jsdom, and any browser without a 2d context, has no raster to draw; the
+// per-cell painter in renderMSABlock stays the fallback
+export function rasterSupported() {
+    supported ??= !!makeRasterCanvas(1, 1);
+    return supported;
+}
+const caches = new WeakMap();
+// Everything a cell's color depends on. A change to any of them makes every
+// cached tile stale, which a fresh cache expresses without tracking which.
+function rasterKeys(model, theme) {
+    return [
+        model.columns,
+        model.leaves,
+        model.colorSchemeName,
+        tileColorTable(model),
+        model.relativeTo,
+        theme.palette.action.hover,
+        theme.palette.background.default,
+    ];
+}
+function getCache(model, theme) {
+    const keys = rasterKeys(model, theme);
+    const prev = caches.get(model);
+    if (prev && keys.every((key, i) => key === prev.keys[i])) {
+        return prev;
+    }
+    const next = {
+        keys,
+        spec: {
+            rowNames: model.leaves.map(node => node.data.name),
+            columns: model.columns,
+            relativeTo: model.relativeTo,
+            colorAt: tileColorFn(model),
+            bg: theme.palette.background.default,
+            hover: theme.palette.action.hover,
+        },
+        numColumns: model.numColumns,
+        numRows: model.numRows,
+        tiles: new Map(),
+    };
+    caches.set(model, next);
+    return next;
+}
+function getTile(cache, tileRow, tileCol) {
+    const key = `${tileRow}_${tileCol}`;
+    const hit = cache.tiles.get(key);
+    if (hit) {
+        // re-inserting makes this the newest entry: a Map iterates in insertion
+        // order, so its first key is the least recently used one
+        cache.tiles.delete(key);
+        cache.tiles.set(key, hit);
+        return hit;
+    }
+    const col0 = tileCol * rasterTileSize;
+    const row0 = tileRow * rasterTileSize;
+    const width = Math.min(rasterTileSize, cache.numColumns - col0);
+    const height = Math.min(rasterTileSize, cache.numRows - row0);
+    if (width <= 0 || height <= 0) {
+        return undefined;
+    }
+    const canvas = paint(rasterPixels({ spec: cache.spec, col0, row0, width, height }), width, height);
+    if (!canvas) {
+        return undefined;
+    }
+    cache.tiles.set(key, canvas);
+    for (const stale of cache.tiles.keys()) {
+        if (cache.tiles.size <= maxCachedTiles) {
+            break;
+        }
+        cache.tiles.delete(stale);
+    }
+    return canvas;
+}
+/**
+ * Paints the alignment background of one MSA block from cached
+ * one-pixel-per-cell tiles. The tiles do not depend on the zoom level, so a zoom
+ * frame costs a handful of drawImage calls instead of a fillRect per visible
+ * cell -- which ran to 885ms per block at the minimum column width.
+ */
+export function drawMsaRaster({ ctx, model, theme, offsetX, offsetY, }) {
+    const { colWidth, rowHeight, blockSize, highResScaleFactor } = model;
+    const cache = getCache(model, theme);
+    ctx.resetTransform();
+    ctx.scale(highResScaleFactor, highResScaleFactor);
+    ctx.translate(-offsetX, -offsetY);
+    // below a pixel per cell a tile carries more cells than the block has room
+    // for, so let the browser downsample it rather than letting whichever cell
+    // landed last win
+    ctx.imageSmoothingEnabled = colWidth < 1 || rowHeight < 1;
+    const tileWidth = rasterTileSize * colWidth;
+    const tileHeight = rasterTileSize * rowHeight;
+    const firstCol = Math.max(0, Math.floor(offsetX / tileWidth));
+    const lastCol = Math.floor((offsetX + blockSize) / tileWidth);
+    const firstRow = Math.max(0, Math.floor(offsetY / tileHeight));
+    const lastRow = Math.floor((offsetY + blockSize) / tileHeight);
+    for (let tileRow = firstRow; tileRow <= lastRow; tileRow++) {
+        for (let tileCol = firstCol; tileCol <= lastCol; tileCol++) {
+            const tile = getTile(cache, tileRow, tileCol);
+            if (tile) {
+                ctx.drawImage(tile, 0, 0, tile.width, tile.height, tileCol * tileWidth, tileRow * tileHeight, tile.width * colWidth, tile.height * rowHeight);
+            }
+        }
+    }
+    ctx.resetTransform();
+    ctx.imageSmoothingEnabled = true;
+}
+/**
+ * The whole alignment sampled down to a strip small enough to sit behind the
+ * minimap thumb, cached alongside the block tiles because it goes stale under
+ * exactly the same conditions.
+ */
+export function msaThumbnail({ model, theme, height, }) {
+    const cache = getCache(model, theme);
+    const { numColumns, numRows } = cache;
+    if (numColumns <= 0 || numRows <= 0) {
+        return undefined;
+    }
+    if (!cache.thumbnail) {
+        const colStep = Math.max(1, Math.ceil(numColumns / maxThumbnailColumns));
+        const rowStep = Math.max(1, Math.ceil(numRows / height));
+        const w = Math.ceil(numColumns / colStep);
+        const h = Math.ceil(numRows / rowStep);
+        cache.thumbnail = paint(rasterPixels({
+            spec: cache.spec,
+            col0: 0,
+            row0: 0,
+            width: w,
+            height: h,
+            colStep,
+            rowStep,
+        }), w, h);
+    }
+    return cache.thumbnail;
+}
+//# sourceMappingURL=msaRaster.js.map

package/dist/components/msa/msaRaster.js.map

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package/dist/components/msa/renderMSABlock.d.ts

@@ -1,7 +1,7 @@
 import type { MsaViewModel } from '../../model.ts';
 import type { RenderCtx } from '../renderCtx.ts';
 import type { Theme } from '@mui/material';
-export declare function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }: {
+export declare function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, rasterTiles, }: {
     offsetX: number;
     offsetY: number;
     theme: Theme;
@@ -11,4 +11,5 @@ export declare function renderMSABlock({ model, offsetX, offsetY, contrastScheme
     highResScaleFactorOverride?: number;
     blockSizeXOverride?: number;
     blockSizeYOverride?: number;
+    rasterTiles?: boolean;
 }): void;

package/dist/components/msa/renderMSABlock.js

@@ -2,8 +2,9 @@ import { setFontSize } from '../../setFontSize.js';
 import { adjustColorForContrast } from '../../util.js';
 import { getVisibleLeaves } from '../getVisibleLeaves.js';
 import { domainBandCursor } from './domainBandCursor.js';
+import { tileColorFn } from './tileColor.js';
 import { visibleColRange } from './visibleColRange.js';
-export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }) {
+export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, rasterTiles, }) {
     const { colWidth, blockSize, rowHeight, fontSize, highResScaleFactor, actuallyShowDomains, bgColor, } = model;
     const k = highResScaleFactorOverride ?? highResScaleFactor;
     const bx = blockSizeXOverride ?? blockSize;
@@ -36,6 +37,9 @@ export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, t
         // when domains are shown the background tiles come from
         // renderBoxFeatureCanvasBlock, so only the letters are drawn here
         drawTiles: !actuallyShowDomains,
+        // ...and when the caller has already laid the raster down, the tiles are
+        // there but nothing here has to paint them
+        rasterTiles,
     });
     drawInsertionIndicators({
         model,
@@ -46,22 +50,6 @@ export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, t
     });
     ctx.resetTransform();
 }
-// Per-cell tile color for the active scheme. The scheme is fixed for the whole
-// block, so resolve which rule applies once rather than re-testing the scheme
-// name inside the innermost loop.
-function tileColorFn(model) {
-    const { colorSchemeName, colorScheme, colClustalX, colConsensus } = model;
-    if (colorSchemeName === 'clustalx_protein_dynamic') {
-        return (col, letter) => colClustalX[col][letter];
-    }
-    if (colorSchemeName === 'percent_identity_dynamic') {
-        return (col, letter) => {
-            const consensus = colConsensus[col];
-            return letter === consensus.letter ? consensus.color : undefined;
-        };
-    }
-    return (_col, letter) => colorScheme[letter];
-}
 // Letter color to use over a domain box, keyed by accession. Domain fills come
 // from a categorical palette that has no fixed lightness, so ask the theme for a
 // readable text color per fill instead of assuming dark-on-light.
@@ -71,10 +59,14 @@ function domainLetterColors(model, theme) {
         theme.palette.getContrastText(fill),
     ]));
 }
-function drawTilesAndText({ model, ctx, theme, contrastScheme, visibleLeaves, xStart, xEnd, referenceSeq, drawTiles, }) {
+function drawTilesAndText({ model, ctx, theme, contrastScheme, visibleLeaves, xStart, xEnd, referenceSeq, drawTiles, rasterTiles, }) {
     const { bgColor, columns, colWidth, rowHeight, relativeTo, showMsaLetters, subFeatureRows, domainBandsByStart, } = model;
     const tiles = drawTiles && bgColor;
-    if (tiles || showMsaLetters) {
+    const paintTiles = tiles && !rasterTiles;
+    if (paintTiles || showMsaLetters) {
+        // over raster tiles the letters take their color from contrastScheme, so
+        // the scheme lookup per cell is pure waste
+        const needsColor = paintTiles || !tiles;
         const tileColor = tileColorFn(model);
         const offsetXAligned = xStart * colWidth;
         const halfColWidth = colWidth / 2;
@@ -101,8 +93,8 @@ function drawTilesAndText({ model, ctx, theme, contrastScheme, visibleLeaves, xS
                     const letter = str[j];
                     const x = j * colWidth + offsetXAligned;
                     const isMatchingReference = referenceSeq && name !== relativeTo && letter === referenceSeq[j];
-                    const color = tileColor(col, letter);
-                    if (tiles) {
+                    const color = needsColor ? tileColor(col, letter) : undefined;
+                    if (paintTiles) {
                         ctx.fillStyle = isMatchingReference
                             ? theme.palette.action.hover
                             : color || theme.palette.background.default;

package/dist/components/msa/renderMSABlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"renderMSABlock.js","sourceRoot":"","sources":["../../../src/components/msa/renderMSABlock.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAA;AAClD,OAAO,EAAE,sBAAsB,EAAE,MAAM,eAAe,CAAA;AACtD,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAA;AACzD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AACxD,OAAO,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAA;AAC5C,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAA;AAQtD,MAAM,UAAU,cAAc,CAAC,EAC7B,KAAK,EACL,OAAO,EACP,OAAO,EACP,cAAc,EACd,GAAG,EACH,KAAK,EACL,0BAA0B,EAC1B,kBAAkB,EAClB,kBAAkB,EAClB,WAAW,GAYZ;IACC,MAAM,EACJ,QAAQ,EACR,SAAS,EACT,SAAS,EACT,QAAQ,EACR,kBAAkB,EAClB,mBAAmB,EACnB,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;IAC1D,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,SAAS,GAAG,CAAC,GAAG,OAAO,CAAC,CAAA;IAChD,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;IACxB,GAAG,CAAC,YAAY,GAAG,YAAY,CAAA;IAC/B,WAAW,CAAC,GAAG,EAAE,QAAQ,EAAE,CAAC,OAAO,CAAC,CAAA;IAEpC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,EAAE;QACd,QAAQ;KACT,CAAC,CAAA;IACF,MAAM,aAAa,GAAG,gBAAgB,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,UAAU,EAAE,EAAE,EAAE,CAAC,CAAA;IAC1E,MAAM,EAAE,UAAU,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACrC,MAAM,YAAY,GAAG,UAAU;QAC7B,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC;QAC9C,CAAC,CAAC,IAAI,CAAA;IAER,gBAAgB,CAAC;QACf,KAAK;QACL,GAAG;QACH,KAAK;QACL,cAAc;QACd,MAAM;QACN,IAAI;QACJ,aAAa;QACb,YAAY;QACZ,wDAAwD;QACxD,kEAAkE;QAClE,SAAS,EAAE,CAAC,mBAAmB;QAC/B,yEAAyE;QACzE,2CAA2C;QAC3C,WAAW;KACZ,CAAC,CAAA;IACF,uBAAuB,CAAC;QACtB,KAAK;QACL,GAAG;QACH,MAAM;QACN,IAAI;QACJ,aAAa;KACd,CAAC,CAAA;IACF,GAAG,CAAC,cAAc,EAAE,CAAA;AACtB,CAAC;AAED,+EAA+E;AAC/E,iFAAiF;AACjF,kEAAkE;AAClE,SAAS,kBAAkB,CAAC,KAAmB,EAAE,KAAY;IAC3D,OAAO,IAAI,GAAG,CACZ,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,IAAI,CAAC,EAAE,EAAE,CAAC;QAC3D,SAAS;QACT,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,IAAI,CAAC;KACpC,CAAC,CACH,CAAA;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,EACxB,KAAK,EACL,GAAG,EACH,KAAK,EACL,cAAc,EACd,aAAa,EACb,MAAM,EACN,IAAI,EACJ,YAAY,EACZ,SAAS,EACT,WAAW,GAYZ;IACC,MAAM,EACJ,OAAO,EACP,OAAO,EACP,QAAQ,EACR,SAAS,EACT,UAAU,EACV,cAAc,EACd,cAAc,EACd,kBAAkB,GACnB,GAAG,KAAK,CAAA;IAET,MAAM,KAAK,GAAG,SAAS,IAAI,OAAO,CAAA;IAClC,MAAM,UAAU,GAAG,KAAK,IAAI,CAAC,WAAW,CAAA;IACxC,IAAI,UAAU,IAAI,cAAc,EAAE,CAAC;QACjC,yEAAyE;QACzE,2CAA2C;QAC3C,MAAM,UAAU,GAAG,UAAU,IAAI,CAAC,KAAK,CAAA;QACvC,MAAM,SAAS,GAAG,WAAW,CAAC,KAAK,CAAC,CAAA;QACpC,MAAM,cAAc,GAAG,MAAM,GAAG,QAAQ,CAAA;QACxC,MAAM,YAAY,GAAG,QAAQ,GAAG,CAAC,CAAA;QACjC,kDAAkD;QAClD,MAAM,gBAAgB,GAAG,SAAS,GAAG,CAAC,CAAA;QACtC,4EAA4E;QAC5E,8EAA8E;QAC9E,4DAA4D;QAC5D,MAAM,WAAW,GAAG,CAAC,SAAS,IAAI,CAAC,cAAc,CAAA;QACjD,MAAM,YAAY,GAAG,WAAW;YAC9B,CAAC,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,CAAC;YAClC,CAAC,CAAC,SAAS,CAAA;QAEb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,aAAa,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;YACvD,MAAM,IAAI,GAAG,aAAa,CAAC,CAAC,CAAE,CAAA;YAC9B,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,IAAI,CAAA;YAC1B,MAAM,CAAC,GAAG,IAAI,CAAC,CAAE,CAAA;YACjB,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,IAAI,GAAG,EAAE,CAAC;gBACR,MAAM,KAAK,GAAG,CAAC,GAAG,SAAS,CAAA;gBAC3B,MAAM,KAAK,GAAG,CAAC,GAAG,gBAAgB,CAAA;gBAClC,MAAM,MAAM,GAAG,gBAAgB,CAC7B,WAAW,CAAC,CAAC,CAAC,kBAAkB,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CACvD,CAAA;gBAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;oBAC7C,MAAM,GAAG,GAAG,MAAM,GAAG,CAAC,CAAA;oBACtB,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAE,CAAA;oBACtB,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,GAAG,cAAc,CAAA;oBACvC,MAAM,mBAAmB,GACvB,YAAY,IAAI,IAAI,KAAK,UAAU,IAAI,MAAM,KAAK,YAAY,CAAC,CAAC,CAAC,CAAA;oBACnE,MAAM,KAAK,GAAG,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;oBAE7D,IAAI,UAAU,EAAE,CAAC;wBACf,GAAG,CAAC,SAAS,GAAG,mBAAmB;4BACjC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK;4BAC5B,CAAC,CAAC,KAAK,IAAI,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,CAAA;wBAC7C,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;oBAC7C,CAAC;oBAED,IAAI,cAAc,EAAE,CAAC;wBACnB,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,CAAA;wBAC5B,GAAG,CAAC,SAAS,GAAG,QAAQ;4BACtB,CAAC,CAAC,wDAAwD;gCACxD,YAAa,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,SAAS,CAAE;4BACnD,CAAC,CAAC,KAAK;gCACL,CAAC,CAAC,2BAA2B;oCAC3B,CAAC,cAAc,CAAC,MAAM,CAAC,IAAI,OAAO,CAAC;gCACrC,CAAC,CAAC,CAAC,SAAS,IAAI,CAAC,KAAK;oCACpB,CAAC,CAAC,sCAAsC;wCACtC,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO;oCAC5B,CAAC,CAAC,qDAAqD;wCACrD,sBAAsB,CACpB,KAAK,EACL,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,CACjC,CAAA;wBACT,GAAG,CAAC,QAAQ,CACV,mBAAmB,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,EAClC,CAAC,GAAG,YAAY,EAChB,KAAK,CACN,CAAA;oBACH,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC;AAED,SAAS,uBAAuB,CAAC,EAC/B,KAAK,EACL,GAAG,EACH,aAAa,EACb,MAAM,EACN,IAAI,GAOL;IACC,MAAM,EAAE,OAAO,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAC5C,IAAI,CAAC,iBAAiB,EAAE,CAAC;QACvB,OAAM;IACR,CAAC;IAED,GAAG,CAAC,SAAS,GAAG,CA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package/dist/components/msa/tileColor.d.ts

@@ -0,0 +1,6 @@
+import type { MsaViewModel } from '../../model.ts';
+export declare function tileColorFn(model: MsaViewModel): (col: number, letter: string) => string | undefined;
+export declare function tileColorTable(model: MsaViewModel): Record<string, string>[] | {
+    letter: string;
+    color: string | undefined;
+}[] | Record<string, string>;

package/dist/components/msa/tileColor.js

@@ -0,0 +1,35 @@
+// Per-cell tile color for the active scheme. The scheme is fixed for the whole
+// block, so resolve which rule applies once rather than re-testing the scheme
+// name inside the innermost loop. Reading only the column table the active
+// scheme needs also keeps the other one -- a per-column map for every column of
+// the alignment -- from being computed at all.
+export function tileColorFn(model) {
+    const { colorSchemeName } = model;
+    if (colorSchemeName === 'clustalx_protein_dynamic') {
+        const { colClustalX } = model;
+        return (col, letter) => colClustalX[col][letter];
+    }
+    if (colorSchemeName === 'percent_identity_dynamic') {
+        const { colConsensus } = model;
+        return (col, letter) => {
+            const consensus = colConsensus[col];
+            return letter === consensus.letter ? consensus.color : undefined;
+        };
+    }
+    const { colorScheme } = model;
+    return (_col, letter) => colorScheme[letter];
+}
+// The column table the active scheme colors from, or undefined for the static
+// schemes. Identity of this plus the scheme name is what a cache of rendered
+// colors has to key on.
+export function tileColorTable(model) {
+    const { colorSchemeName } = model;
+    if (colorSchemeName === 'clustalx_protein_dynamic') {
+        return model.colClustalX;
+    }
+    if (colorSchemeName === 'percent_identity_dynamic') {
+        return model.colConsensus;
+    }
+    return model.colorScheme;
+}
+//# sourceMappingURL=tileColor.js.map

package/dist/components/msa/tileColor.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tileColor.js","sourceRoot":"","sources":["../../../src/components/msa/tileColor.ts"],"names":[],"mappings":"AAEA,+EAA+E;AAC/E,8EAA8E;AAC9E,2EAA2E;AAC3E,gFAAgF;AAChF,+CAA+C;AAC/C,MAAM,UAAU,WAAW,CAAC,KAAmB;IAC7C,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;QAC7B,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,GAAG,CAAE,CAAC,MAAM,CAAC,CAAA;IACnE,CAAC;IACD,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,MAAM,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;QAC9B,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE;YACrC,MAAM,SAAS,GAAG,YAAY,CAAC,GAAG,CAAE,CAAA;YACpC,OAAO,MAAM,KAAK,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAA;QAClE,CAAC,CAAA;IACH,CAAC;IACD,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC7B,OAAO,CAAC,IAAY,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;AAC9D,CAAC;AAED,8EAA8E;AAC9E,6EAA6E;AAC7E,wBAAwB;AACxB,MAAM,UAAU,cAAc,CAAC,KAAmB;IAChD,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,OAAO,KAAK,CAAC,WAAW,CAAA;IAC1B,CAAC;IACD,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,OAAO,KAAK,CAAC,YAAY,CAAA;IAC3B,CAAC;IACD,OAAO,KAAK,CAAC,WAAW,CAAA;AAC1B,CAAC"}

package/dist/components/renderCtx.d.ts

@@ -4,4 +4,4 @@
  * SVG export) satisfy this, so renderers can be typed against it without an
  * `as any` cast at the SVG-export boundary.
  */
-export type RenderCtx = Pick<CanvasRenderingContext2D, 'arc' | 'beginPath' | 'clearRect' | 'closePath' | 'fill' | 'fillRect' | 'fillStyle' | 'fillText' | 'font' | 'lineTo' | 'lineWidth' | 'measureText' | 'moveTo' | 'resetTransform' | 'scale' | 'setLineDash' | 'stroke' | 'strokeRect' | 'strokeStyle' | 'textAlign' | 'textBaseline' | 'translate'>;
+export type RenderCtx = Pick<CanvasRenderingContext2D, 'arc' | 'beginPath' | 'clearRect' | 'closePath' | 'fill' | 'fillRect' | 'fillStyle' | 'fillText' | 'font' | 'lineTo' | 'lineWidth' | 'measureText' | 'moveTo' | 'resetTransform' | 'restore' | 'save' | 'scale' | 'setLineDash' | 'stroke' | 'strokeRect' | 'strokeStyle' | 'textAlign' | 'textBaseline' | 'translate'>;

package/dist/components/tracks/TrackBlocks.d.ts

@@ -0,0 +1,14 @@
+import React from 'react';
+import type { MsaViewModel } from '../../model.ts';
+import type { BasicTrack } from '../../types.ts';
+/**
+ * The canvas blocks covering one track's row of the alignment. Every track kind
+ * shares this host: what differs between conservation, sequence logo and the
+ * Stockholm text tracks is which draw function `drawTrackBlock` dispatches to,
+ * not how the blocks are laid out or kept in sync with the horizontal scroll.
+ */
+declare const TrackBlocks: ({ model, track, }: {
+    model: MsaViewModel;
+    track: BasicTrack;
+}) => React.JSX.Element | null;
+export default TrackBlocks;