react-msaview 5.6.3 → 5.7.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundle/index.js +134 -140
- package/bundle/index.js.map +4 -4
- package/dist/colorSchemes.js +1 -1
- package/dist/components/ConservationTrack.js +3 -3
- package/dist/components/ConservationTrack.js.map +1 -1
- package/dist/components/Loading.js +3 -4
- package/dist/components/Loading.js.map +1 -1
- package/dist/components/MSAView.js +8 -8
- package/dist/components/MSAViewer.js +2 -2
- package/dist/components/ResizeHandles.js +1 -1
- package/dist/components/SequenceTextArea.js +2 -2
- package/dist/components/SequenceTextArea.js.map +1 -1
- package/dist/components/TextTrack.js +7 -6
- package/dist/components/TextTrack.js.map +1 -1
- package/dist/components/Track.js +2 -2
- package/dist/components/VerticalScrollbar.js +1 -1
- package/dist/components/dialogs/AboutDialog.js +1 -1
- package/dist/components/dialogs/DomainDialog.js +2 -2
- package/dist/components/dialogs/ExportSVGDialog.js +1 -1
- package/dist/components/dialogs/InterProScanDialog.js +1 -1
- package/dist/components/dialogs/MetadataDialog.js +1 -1
- package/dist/components/dialogs/TrackInfoDialog.js +1 -1
- package/dist/components/dialogs/UserProvidedDomainsDialog.js +1 -1
- package/dist/components/header/ColorSchemeMenu.js +1 -1
- package/dist/components/header/FileMenu.js +3 -3
- package/dist/components/header/Header.js +11 -11
- package/dist/components/header/MSASettingsMenu.js +1 -1
- package/dist/components/header/SettingsMenu.js +2 -2
- package/dist/components/header/SettingsMenu.js.map +1 -1
- package/dist/components/header/TreeSettingsMenu.js +1 -1
- package/dist/components/header/getDomainsMenu.d.ts +4 -4
- package/dist/components/header/getDomainsMenu.js +3 -3
- package/dist/components/import/ImportForm.js +2 -2
- package/dist/components/import/ImportFormExamples.js +2 -2
- package/dist/components/minimap/Minimap.js +2 -2
- package/dist/components/minimap/Minimap.js.map +1 -1
- package/dist/components/minimap/MinimapSVG.js +1 -1
- package/dist/components/msa/MSACanvas.js +4 -4
- package/dist/components/msa/MSACanvas.js.map +1 -1
- package/dist/components/msa/MSACanvasBlock.js +7 -7
- package/dist/components/msa/MSACanvasBlock.js.map +1 -1
- package/dist/components/msa/MSAMouseoverCanvas.js +2 -2
- package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
- package/dist/components/msa/MSAPanel.js +3 -3
- package/dist/components/msa/renderBoxFeatureCanvasBlock.js +2 -2
- package/dist/components/msa/renderMSABlock.js +4 -4
- package/dist/components/msa/renderMSABlock.js.map +1 -1
- package/dist/components/msa/renderMSAMouseover.js +1 -1
- package/dist/components/msa/useMsaBlockMouse.d.ts +1 -1
- package/dist/components/msa/useMsaBlockMouse.js +15 -6
- package/dist/components/msa/useMsaBlockMouse.js.map +1 -1
- package/dist/components/tracks/renderTracksSvg.d.ts +7 -3
- package/dist/components/tracks/renderTracksSvg.js +19 -12
- package/dist/components/tracks/renderTracksSvg.js.map +1 -1
- package/dist/components/tree/TreeCanvas.js +5 -5
- package/dist/components/tree/TreeCanvas.js.map +1 -1
- package/dist/components/tree/TreeCanvasBlock.js +5 -5
- package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
- package/dist/components/tree/TreeNodeMenu.js +1 -1
- package/dist/components/tree/TreePanel.js +1 -1
- package/dist/components/tree/dialogs/TreeNodeInfoDialog.js +1 -1
- package/dist/components/tree/renderTreeCanvas.d.ts +1 -1
- package/dist/components/tree/renderTreeCanvas.js +3 -3
- package/dist/components/tree/useTreeHover.d.ts +2 -2
- package/dist/components/tree/useTreeHover.js +1 -1
- package/dist/components/tree/useTreeHover.js.map +1 -1
- package/dist/createPaletteMap.js +1 -1
- package/dist/fetchUtils.js.map +1 -1
- package/dist/index.js +4 -4
- package/dist/launchInterProScan.js +1 -1
- package/dist/measureTextCanvas.js +1 -1
- package/dist/model/msaModel.js +2 -2
- package/dist/model/treeModel.js +2 -2
- package/dist/model.d.ts +69 -64
- package/dist/model.js +44 -26
- package/dist/model.js.map +1 -1
- package/dist/propertyConservation.js +1 -1
- package/dist/renderToSvg.js +8 -9
- package/dist/renderToSvg.js.map +1 -1
- package/dist/rowCoordinateCalculations.js +1 -1
- package/dist/seqPosToGlobalCol.js +1 -1
- package/dist/umd.js +2 -2
- package/dist/useCanvasAutorun.js +1 -1
- package/dist/useCanvasAutorun.js.map +1 -1
- package/dist/useColorContrast.js +1 -1
- package/dist/useWheelScroll.js +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/wheelZoom.d.ts +1 -1
- package/package.json +8 -7
- package/src/components/ConservationTrack.tsx +1 -1
- package/src/components/SequenceTextArea.tsx +1 -1
- package/src/components/TextTrack.tsx +3 -2
- package/src/components/header/SettingsMenu.tsx +1 -1
- package/src/components/minimap/Minimap.tsx +1 -1
- package/src/components/msa/MSACanvas.tsx +6 -1
- package/src/components/msa/MSACanvasBlock.tsx +3 -3
- package/src/components/msa/MSAMouseoverCanvas.tsx +1 -1
- package/src/components/msa/renderMSABlock.ts +1 -1
- package/src/components/msa/useMsaBlockMouse.ts +17 -8
- package/src/components/tracks/renderTracksSvg.ts +21 -7
- package/src/components/tree/TreeCanvas.tsx +2 -2
- package/src/components/tree/TreeCanvasBlock.tsx +1 -1
- package/src/components/tree/renderTreeCanvas.test.ts +1 -1
- package/src/components/tree/renderTreeCanvas.ts +1 -1
- package/src/components/tree/useTreeHover.ts +2 -2
- package/src/model.ts +25 -6
- package/src/renderToSvg.tsx +1 -1
- package/src/treeMetadata.test.ts +39 -0
- package/src/useCanvasAutorun.ts +3 -2
- package/src/version.ts +1 -1
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
2
|
import { observer } from 'mobx-react';
|
|
3
|
-
import DomainLegend from
|
|
4
|
-
import MSACanvas from
|
|
5
|
-
import MSAMouseoverCanvas from
|
|
3
|
+
import DomainLegend from './DomainLegend.js';
|
|
4
|
+
import MSACanvas from './MSACanvas.js';
|
|
5
|
+
import MSAMouseoverCanvas from './MSAMouseoverCanvas.js';
|
|
6
6
|
const MSAPanel = observer(function ({ model }) {
|
|
7
7
|
return (React.createElement("div", { style: { position: 'relative' } },
|
|
8
8
|
React.createElement(MSACanvas, { model: model }),
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import { subFeatureRowHeight } from
|
|
2
|
-
import { getVisibleLeaves } from
|
|
1
|
+
import { subFeatureRowHeight } from '../../constants.js';
|
|
2
|
+
import { getVisibleLeaves } from '../getVisibleLeaves.js';
|
|
3
3
|
export function renderBoxFeatureCanvasBlock({ model, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }) {
|
|
4
4
|
const { blockSize, rowHeight, highResScaleFactor, showDomains } = model;
|
|
5
5
|
if (showDomains) {
|
|
@@ -1,7 +1,7 @@
|
|
|
1
|
-
import {
|
|
2
|
-
import {
|
|
3
|
-
import {
|
|
4
|
-
import {
|
|
1
|
+
import { setFontSize } from '../../setFontSize.js';
|
|
2
|
+
import { adjustColorForContrast } from '../../util.js';
|
|
3
|
+
import { getVisibleLeaves } from '../getVisibleLeaves.js';
|
|
4
|
+
import { visibleColRange } from './visibleColRange.js';
|
|
5
5
|
export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }) {
|
|
6
6
|
const { colWidth, blockSize, rowHeight, fontSize, highResScaleFactor, actuallyShowDomains, bgColor, } = model;
|
|
7
7
|
const k = highResScaleFactorOverride ?? highResScaleFactor;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"renderMSABlock.js","sourceRoot":"","sources":["../../../src/components/msa/renderMSABlock.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"renderMSABlock.js","sourceRoot":"","sources":["../../../src/components/msa/renderMSABlock.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAA;AAClD,OAAO,EAAE,sBAAsB,EAAE,MAAM,eAAe,CAAA;AACtD,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAA;AACzD,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAA;AAQtD,MAAM,UAAU,cAAc,CAAC,EAC7B,KAAK,EACL,OAAO,EACP,OAAO,EACP,cAAc,EACd,GAAG,EACH,KAAK,EACL,0BAA0B,EAC1B,kBAAkB,EAClB,kBAAkB,GAWnB;IACC,MAAM,EACJ,QAAQ,EACR,SAAS,EACT,SAAS,EACT,QAAQ,EACR,kBAAkB,EAClB,mBAAmB,EACnB,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;IAC1D,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,SAAS,GAAG,CAAC,GAAG,OAAO,CAAC,CAAA;IAChD,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;IACxB,GAAG,CAAC,YAAY,GAAG,YAAY,CAAA;IAC/B,WAAW,CAAC,GAAG,EAAE,QAAQ,EAAE,CAAC,OAAO,CAAC,CAAA;IAEpC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,EAAE;QACd,QAAQ;KACT,CAAC,CAAA;IACF,MAAM,aAAa,GAAG,gBAAgB,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,UAAU,EAAE,EAAE,EAAE,CAAC,CAAA;IAC1E,MAAM,EAAE,UAAU,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACrC,MAAM,YAAY,GAAG,UAAU;QAC7B,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC;QAC9C,CAAC,CAAC,IAAI,CAAA;IAER,gBAAgB,CAAC;QACf,KAAK;QACL,GAAG;QACH,KAAK;QACL,cAAc;QACd,MAAM;QACN,IAAI;QACJ,aAAa;QACb,YAAY;QACZ,wDAAwD;QACxD,kEAAkE;QAClE,SAAS,EAAE,CAAC,mBAAmB;KAChC,CAAC,CAAA;IACF,uBAAuB,CAAC;QACtB,KAAK;QACL,GAAG;QACH,MAAM;QACN,IAAI;QACJ,aAAa;KACd,CAAC,CAAA;IACF,GAAG,CAAC,cAAc,EAAE,CAAA;AACtB,CAAC;AAED,+EAA+E;AAC/E,8EAA8E;AAC9E,kCAAkC;AAClC,SAAS,WAAW,CAAC,KAAmB;IACtC,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,WAAW,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IACzE,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,GAAG,CAAE,CAAC,MAAM,CAAC,CAAA;IACnE,CAAC;IACD,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE;YACrC,MAAM,SAAS,GAAG,YAAY,CAAC,GAAG,CAAE,CAAA;YACpC,OAAO,MAAM,KAAK,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAA;QAClE,CAAC,CAAA;IACH,CAAC;IACD,OAAO,CAAC,IAAY,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;AAC9D,CAAC;AAED,+EAA+E;AAC/E,iFAAiF;AACjF,kEAAkE;AAClE,SAAS,kBAAkB,CAAC,KAAmB,EAAE,KAAY;IAC3D,OAAO,IAAI,GAAG,CACZ,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,IAAI,CAAC,EAAE,EAAE,CAAC;QAC3D,SAAS;QACT,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,IAAI,CAAC;KACpC,CAAC,CACH,CAAA;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,EACxB,KAAK,EACL,GAAG,EACH,KAAK,EACL,cAAc,EACd,aAAa,EACb,MAAM,EACN,IAAI,EACJ,YAAY,EACZ,SAAS,GAWV;IACC,MAAM,EACJ,OAAO,EACP,OAAO,EACP,QAAQ,EACR,SAAS,EACT,UAAU,EACV,cAAc,EACd,cAAc,EACd,kBAAkB,GACnB,GAAG,KAAK,CAAA;IAET,MAAM,KAAK,GAAG,SAAS,IAAI,OAAO,CAAA;IAClC,IAAI,KAAK,IAAI,cAAc,EAAE,CAAC;QAC5B,MAAM,SAAS,GAAG,WAAW,CAAC,KAAK,CAAC,CAAA;QACpC,MAAM,cAAc,GAAG,MAAM,GAAG,QAAQ,CAAA;QACxC,MAAM,YAAY,GAAG,QAAQ,GAAG,CAAC,CAAA;QACjC,kDAAkD;QAClD,MAAM,gBAAgB,GAAG,SAAS,GAAG,CAAC,CAAA;QACtC,4EAA4E;QAC5E,8EAA8E;QAC9E,4DAA4D;QAC5D,MAAM,WAAW,GAAG,CAAC,SAAS,IAAI,CAAC,cAAc,CAAA;QACjD,MAAM,YAAY,GAAG,WAAW;YAC9B,CAAC,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,CAAC;YAClC,CAAC,CAAC,SAAS,CAAA;QAEb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,aAAa,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;YACvD,MAAM,IAAI,GAAG,aAAa,CAAC,CAAC,CAAE,CAAA;YAC9B,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,IAAI,CAAA;YAC1B,MAAM,CAAC,GAAG,IAAI,CAAC,CAAE,CAAA;YACjB,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,IAAI,GAAG,EAAE,CAAC;gBACR,MAAM,KAAK,GAAG,CAAC,GAAG,SAAS,CAAA;gBAC3B,MAAM,KAAK,GAAG,CAAC,GAAG,gBAAgB,CAAA;gBAClC,MAAM,KAAK,GAAG,WAAW,CAAC,CAAC,CAAC,kBAAkB,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;gBACpE,IAAI,IAAI,GAAG,CAAC,CAAA;gBAEZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;oBAC7C,MAAM,GAAG,GAAG,MAAM,GAAG,CAAC,CAAA;oBACtB,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAE,CAAA;oBACtB,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,GAAG,cAAc,CAAA;oBACvC,MAAM,mBAAmB,GACvB,YAAY,IAAI,IAAI,KAAK,UAAU,IAAI,MAAM,KAAK,YAAY,CAAC,CAAC,CAAC,CAAA;oBACnE,MAAM,KAAK,GAAG,SAAS,CAAC,GAAG,EAAE,MAAM,CAAC,CAAA;oBAEpC,IAAI,KAAK,EAAE,CAAC;wBACV,GAAG,CAAC,SAAS,GAAG,mBAAmB;4BACjC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK;4BAC5B,CAAC,CAAC,KAAK,IAAI,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,CAAA;wBAC7C,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;oBAC7C,CAAC;oBAED,IAAI,cAAc,EAAE,CAAC;wBACnB,mEAAmE;wBACnE,iEAAiE;wBACjE,OAAO,KAAK,IAAI,IAAI,GAAG,KAAK,CAAC,MAAM,IAAI,KAAK,CAAC,IAAI,CAAE,CAAC,MAAM,IAAI,GAAG,EAAE,CAAC;4BAClE,IAAI,EAAE,CAAA;wBACR,CAAC;wBACD,MAAM,QAAQ,GAAG,KAAK,EAAE,CAAC,IAAI,CAAC,CAAA;wBAC9B,GAAG,CAAC,SAAS;4BACX,QAAQ,IAAI,QAAQ,CAAC,QAAQ,IAAI,GAAG;gCAClC,CAAC,CAAC,wDAAwD;oCACxD,YAAa,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,SAAS,CAAE;gCACnD,CAAC,CAAC,KAAK;oCACL,CAAC,CAAC,2BAA2B;wCAC3B,CAAC,cAAc,CAAC,MAAM,CAAC,IAAI,OAAO,CAAC;oCACrC,CAAC,CAAC,CAAC,SAAS,IAAI,CAAC,KAAK;wCACpB,CAAC,CAAC,sCAAsC;4CACtC,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO;wCAC5B,CAAC,CAAC,qDAAqD;4CACrD,sBAAsB,CACpB,KAAK,EACL,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,CACjC,CAAA;wBACX,GAAG,CAAC,QAAQ,CACV,mBAAmB,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,EAClC,CAAC,GAAG,YAAY,EAChB,KAAK,CACN,CAAA;oBACH,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC;AAED,SAAS,uBAAuB,CAAC,EAC/B,KAAK,EACL,GAAG,EACH,aAAa,EACb,MAAM,EACN,IAAI,GAOL;IACC,MAAM,EAAE,OAAO,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAC5C,IAAI,CAAC,iBAAiB,EAAE,CAAC;QACvB,OAAM;IACR,CAAC;IAED,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;IACjB,GAAG,CAAC,WAAW,GAAG,MAAM,CAAA;IACxB,UAAU,CAAC,EAAE,aAAa,EAAE,MAAM,EAAE,GAAG,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAA;IAClE,GAAG,CAAC,WAAW,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAA;IAC5C,UAAU,CAAC,EAAE,aAAa,EAAE,MAAM,EAAE,GAAG,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,CAAC,CAAA;AACrE,CAAC;AAED,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,GAAG,EACH,aAAa,EACb,MAAM,EACN,IAAI,EACJ,MAAM,GAQP;IACC,MAAM,OAAO,GAAG,CAAC,CAAA;IACjB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACzD,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;QACjC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,IAAI,CAAA;QAC1B,MAAM,UAAU,GAAG,kBAAkB,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;QAC/C,IAAI,UAAU,EAAE,CAAC;YACf,MAAM,CAAC,GAAG,IAAI,CAAC,CAAE,CAAA;YACjB,KAAK,MAAM,EAAE,GAAG,EAAE,IAAI,UAAU,EAAE,CAAC;gBACjC,IAAI,GAAG,IAAI,MAAM,IAAI,GAAG,GAAG,IAAI,EAAE,CAAC;oBAChC,MAAM,CAAC,GAAG,GAAG,GAAG,QAAQ,CAAA;oBACxB,MAAM,GAAG,GAAG,CAAC,GAAG,SAAS,CAAA;oBACzB,MAAM,MAAM,GAAG,CAAC,CAAA;oBAChB,GAAG,CAAC,SAAS,EAAE,CAAA;oBACf,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,MAAM,EAAE,GAAG,GAAG,MAAM,CAAC,CAAA;oBACpC,IAAI,QAAQ,GAAG,GAAG,CAAA;oBAClB,IAAI,OAAO,GAAG,IAAI,CAAA;oBAClB,OAAO,QAAQ,GAAG,MAAM,EAAE,CAAC;wBACzB,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,OAAO,GAAG,CAAC,EAAE,MAAM,CAAC,CAAA;wBACtD,MAAM,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAA;wBACjD,GAAG,CAAC,MAAM,CAAC,KAAK,GAAG,MAAM,EAAE,KAAK,GAAG,MAAM,CAAC,CAAA;wBAC1C,QAAQ,GAAG,KAAK,CAAA;wBAChB,OAAO,GAAG,CAAC,OAAO,CAAA;oBACpB,CAAC;oBACD,GAAG,CAAC,MAAM,EAAE,CAAA;gBACd,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { multiRowHoverColor, referenceColor } from
|
|
1
|
+
import { multiRowHoverColor, referenceColor } from '../overlayColors.js';
|
|
2
2
|
const hoverColor = 'rgba(0,0,0,0.15)';
|
|
3
3
|
const highlightColor = 'rgba(128,128,0,0.2)';
|
|
4
4
|
// the persistent highlightColumns overlay: a stronger fill plus a solid border
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import type React from 'react';
|
|
2
1
|
import type { MsaViewModel } from '../../model.ts';
|
|
2
|
+
import type React from 'react';
|
|
3
3
|
/**
|
|
4
4
|
* Translates pointer events over one MSA block into model column/row hover and
|
|
5
5
|
* click state, and reports where a tooltip should be anchored.
|
|
@@ -20,21 +20,30 @@ export function useMsaBlockMouse({ model, offsetX, offsetY, }) {
|
|
|
20
20
|
const { colWidth, rowHeight } = model;
|
|
21
21
|
return eventToColRow({ event, el, offsetX, offsetY, colWidth, rowHeight });
|
|
22
22
|
}
|
|
23
|
+
// a block can extend past the alignment (the last block is a full tile wide,
|
|
24
|
+
// and the panel is taller than the rows when there are few of them), so a
|
|
25
|
+
// pointer inside the block is not necessarily over a cell
|
|
26
|
+
function inBounds({ col, row }) {
|
|
27
|
+
return col >= 0 && col < model.numColumns && row >= 0 && row < model.numRows;
|
|
28
|
+
}
|
|
23
29
|
function onMouseMove(event, el) {
|
|
24
|
-
const
|
|
25
|
-
const
|
|
26
|
-
model.setMousePos(
|
|
30
|
+
const pos = colRow(event, el);
|
|
31
|
+
const hit = inBounds(pos);
|
|
32
|
+
model.setMousePos(hit ? pos.col : undefined, hit ? pos.row : undefined);
|
|
27
33
|
const hasTooltip = !!model.hoveredInsertion ||
|
|
28
34
|
model.mouseOverDomains.length > 0 ||
|
|
29
35
|
(model.showColumnStats && !!model.mouseOverColumnStats);
|
|
30
36
|
setTooltipPoint(hasTooltip ? { x: event.clientX, y: event.clientY } : undefined);
|
|
31
37
|
}
|
|
32
38
|
function onClick(event, el) {
|
|
33
|
-
const
|
|
39
|
+
const pos = colRow(event, el);
|
|
40
|
+
const { col, row } = pos;
|
|
34
41
|
const { mouseClickCol, mouseClickRow } = model;
|
|
35
|
-
// clicking the same cell again clears the pinned crosshair
|
|
42
|
+
// clicking the same cell again clears the pinned crosshair, and so does
|
|
43
|
+
// clicking past the end of the alignment -- there is no cell to pin there
|
|
36
44
|
const same = col === mouseClickCol && row === mouseClickRow;
|
|
37
|
-
|
|
45
|
+
const keep = inBounds(pos) && !same;
|
|
46
|
+
model.setMouseClickPos(keep ? col : undefined, keep ? row : undefined);
|
|
38
47
|
}
|
|
39
48
|
function onMouseLeave() {
|
|
40
49
|
model.setMousePos();
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"useMsaBlockMouse.js","sourceRoot":"","sources":["../../../src/components/msa/useMsaBlockMouse.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAKhC,SAAS,aAAa,CAAC,EACrB,KAAK,EACL,EAAE,EACF,OAAO,EACP,OAAO,EACP,QAAQ,EACR,SAAS,GAQV;IACC,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,qBAAqB,EAAE,CAAA;IAChD,OAAO;QACL,GAAG,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,GAAG,OAAO,CAAC,GAAG,QAAQ,CAAC;QAC5D,GAAG,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,GAAG,GAAG,OAAO,CAAC,GAAG,SAAS,CAAC;KAC7D,CAAA;AACH,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,gBAAgB,CAAC,EAC/B,KAAK,EACL,OAAO,EACP,OAAO,GAKR;IACC,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,EAA4B,CAAA;IAE5E,SAAS,MAAM,CAAC,KAAuB,EAAE,EAAe;QACtD,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;QACrC,OAAO,aAAa,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,CAAC,CAAA;IAC5E,CAAC;IAED,
|
|
1
|
+
{"version":3,"file":"useMsaBlockMouse.js","sourceRoot":"","sources":["../../../src/components/msa/useMsaBlockMouse.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAKhC,SAAS,aAAa,CAAC,EACrB,KAAK,EACL,EAAE,EACF,OAAO,EACP,OAAO,EACP,QAAQ,EACR,SAAS,GAQV;IACC,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,qBAAqB,EAAE,CAAA;IAChD,OAAO;QACL,GAAG,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,GAAG,OAAO,CAAC,GAAG,QAAQ,CAAC;QAC5D,GAAG,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,GAAG,GAAG,OAAO,CAAC,GAAG,SAAS,CAAC;KAC7D,CAAA;AACH,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,gBAAgB,CAAC,EAC/B,KAAK,EACL,OAAO,EACP,OAAO,GAKR;IACC,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,EAA4B,CAAA;IAE5E,SAAS,MAAM,CAAC,KAAuB,EAAE,EAAe;QACtD,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;QACrC,OAAO,aAAa,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,CAAC,CAAA;IAC5E,CAAC;IAED,6EAA6E;IAC7E,0EAA0E;IAC1E,0DAA0D;IAC1D,SAAS,QAAQ,CAAC,EAAE,GAAG,EAAE,GAAG,EAAgC;QAC1D,OAAO,GAAG,IAAI,CAAC,IAAI,GAAG,GAAG,KAAK,CAAC,UAAU,IAAI,GAAG,IAAI,CAAC,IAAI,GAAG,GAAG,KAAK,CAAC,OAAO,CAAA;IAC9E,CAAC;IAED,SAAS,WAAW,CAAC,KAAuB,EAAE,EAAe;QAC3D,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;QAC7B,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAA;QACzB,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAA;QAEvE,MAAM,UAAU,GACd,CAAC,CAAC,KAAK,CAAC,gBAAgB;YACxB,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC;YACjC,CAAC,KAAK,CAAC,eAAe,IAAI,CAAC,CAAC,KAAK,CAAC,oBAAoB,CAAC,CAAA;QACzD,eAAe,CACb,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,SAAS,CAChE,CAAA;IACH,CAAC;IAED,SAAS,OAAO,CAAC,KAAuB,EAAE,EAAe;QACvD,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;QAC7B,MAAM,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,GAAG,CAAA;QACxB,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;QAC9C,wEAAwE;QACxE,0EAA0E;QAC1E,MAAM,IAAI,GAAG,GAAG,KAAK,aAAa,IAAI,GAAG,KAAK,aAAa,CAAA;QAC3D,MAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAA;QACnC,KAAK,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAA;IACxE,CAAC;IAED,SAAS,YAAY;QACnB,KAAK,CAAC,WAAW,EAAE,CAAA;QACnB,eAAe,CAAC,SAAS,CAAC,CAAA;IAC5B,CAAC;IAED,OAAO,EAAE,YAAY,EAAE,WAAW,EAAE,OAAO,EAAE,YAAY,EAAE,CAAA;AAC7D,CAAC"}
|
|
@@ -1,6 +1,7 @@
|
|
|
1
1
|
import type { MsaViewModel } from '../../model.ts';
|
|
2
2
|
import type { BasicTrack } from '../../types.ts';
|
|
3
3
|
import type { RenderCtx } from '../renderCtx.ts';
|
|
4
|
+
import type { Theme } from '@mui/material';
|
|
4
5
|
export declare function drawConservationBars({ ctx, values, color, colWidth, trackHeight, offsetX, blockSize, }: {
|
|
5
6
|
ctx: RenderCtx;
|
|
6
7
|
values: number[];
|
|
@@ -11,12 +12,13 @@ export declare function drawConservationBars({ ctx, values, color, colWidth, tra
|
|
|
11
12
|
blockSize: number;
|
|
12
13
|
}): void;
|
|
13
14
|
export declare function barTrackValues(model: MsaViewModel, trackId: string): number[];
|
|
14
|
-
export declare function drawTextTrackContent({ ctx, data, colorScheme, contrastScheme, bgColor, colWidth, rowHeight, offsetX, blockSize, }: {
|
|
15
|
+
export declare function drawTextTrackContent({ ctx, data, colorScheme, contrastScheme, bgColor, textColor, colWidth, rowHeight, offsetX, blockSize, }: {
|
|
15
16
|
ctx: RenderCtx;
|
|
16
17
|
data: string | undefined;
|
|
17
18
|
colorScheme: Record<string, string>;
|
|
18
19
|
contrastScheme: Record<string, string>;
|
|
19
20
|
bgColor: boolean;
|
|
21
|
+
textColor: string;
|
|
20
22
|
colWidth: number;
|
|
21
23
|
rowHeight: number;
|
|
22
24
|
offsetX: number;
|
|
@@ -32,21 +34,23 @@ export declare function renderConservationTrack({ model, ctx, track, offsetX, of
|
|
|
32
34
|
blockSizeXOverride?: number;
|
|
33
35
|
highResScaleFactorOverride?: number;
|
|
34
36
|
}): void;
|
|
35
|
-
export declare function renderTextTrack({ model, ctx, track, offsetX, offsetY, contrastScheme, blockSizeXOverride, highResScaleFactorOverride, }: {
|
|
37
|
+
export declare function renderTextTrack({ model, ctx, track, offsetX, offsetY, contrastScheme, theme, blockSizeXOverride, highResScaleFactorOverride, }: {
|
|
36
38
|
model: MsaViewModel;
|
|
37
39
|
ctx: RenderCtx;
|
|
38
40
|
track: BasicTrack;
|
|
39
41
|
offsetX: number;
|
|
40
42
|
offsetY: number;
|
|
41
43
|
contrastScheme: Record<string, string>;
|
|
44
|
+
theme: Theme;
|
|
42
45
|
blockSizeXOverride?: number;
|
|
43
46
|
highResScaleFactorOverride?: number;
|
|
44
47
|
}): void;
|
|
45
|
-
export declare function renderAllTracks({ model, ctx, offsetX, contrastScheme, blockSizeXOverride, highResScaleFactorOverride, }: {
|
|
48
|
+
export declare function renderAllTracks({ model, ctx, offsetX, contrastScheme, theme, blockSizeXOverride, highResScaleFactorOverride, }: {
|
|
46
49
|
model: MsaViewModel;
|
|
47
50
|
ctx: RenderCtx;
|
|
48
51
|
offsetX: number;
|
|
49
52
|
contrastScheme: Record<string, string>;
|
|
53
|
+
theme: Theme;
|
|
50
54
|
blockSizeXOverride?: number;
|
|
51
55
|
highResScaleFactorOverride?: number;
|
|
52
56
|
}): void;
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import { setFontSize } from
|
|
2
|
-
import { visibleColRange } from
|
|
1
|
+
import { setFontSize } from '../../setFontSize.js';
|
|
2
|
+
import { visibleColRange } from '../msa/visibleColRange.js';
|
|
3
3
|
export function drawConservationBars({ ctx, values, color, colWidth, trackHeight, offsetX, blockSize, }) {
|
|
4
4
|
const { xStart, xEnd } = visibleColRange({
|
|
5
5
|
offsetX,
|
|
@@ -21,24 +21,29 @@ export function barTrackValues(model, trackId) {
|
|
|
21
21
|
? model.propertyConservation
|
|
22
22
|
: model.conservation;
|
|
23
23
|
}
|
|
24
|
-
export function drawTextTrackContent({ ctx, data, colorScheme, contrastScheme, bgColor, colWidth, rowHeight, offsetX, blockSize, }) {
|
|
24
|
+
export function drawTextTrackContent({ ctx, data, colorScheme, contrastScheme, bgColor, textColor, colWidth, rowHeight, offsetX, blockSize, }) {
|
|
25
25
|
const { xStart, xEnd } = visibleColRange({
|
|
26
26
|
offsetX,
|
|
27
27
|
blockWidth: blockSize,
|
|
28
28
|
colWidth,
|
|
29
29
|
});
|
|
30
30
|
const str = data?.slice(xStart, xEnd);
|
|
31
|
+
const drawLetters = rowHeight >= 10 && colWidth >= rowHeight / 2;
|
|
31
32
|
for (let i = 0; str && i < str.length; i++) {
|
|
32
33
|
const letter = str[i];
|
|
33
34
|
const upper = letter.toUpperCase();
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
|
|
35
|
+
const color = colorScheme[upper];
|
|
36
|
+
const x = (xStart + i) * colWidth;
|
|
37
|
+
const filled = bgColor && !!color;
|
|
38
|
+
if (filled) {
|
|
39
|
+
ctx.fillStyle = color;
|
|
37
40
|
ctx.fillRect(x, 0, colWidth, rowHeight);
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
41
|
+
}
|
|
42
|
+
if (drawLetters) {
|
|
43
|
+
// a letter on a colored tile needs the tile's contrast color; otherwise it
|
|
44
|
+
// sits on the plain background and takes the theme's text color
|
|
45
|
+
ctx.fillStyle = filled ? (contrastScheme[upper] ?? 'black') : textColor;
|
|
46
|
+
ctx.fillText(letter, x + colWidth / 2, rowHeight / 2 + 1);
|
|
42
47
|
}
|
|
43
48
|
}
|
|
44
49
|
}
|
|
@@ -60,7 +65,7 @@ export function renderConservationTrack({ model, ctx, track, offsetX, offsetY, t
|
|
|
60
65
|
});
|
|
61
66
|
ctx.resetTransform();
|
|
62
67
|
}
|
|
63
|
-
export function renderTextTrack({ model, ctx, track, offsetX, offsetY, contrastScheme, blockSizeXOverride, highResScaleFactorOverride, }) {
|
|
68
|
+
export function renderTextTrack({ model, ctx, track, offsetX, offsetY, contrastScheme, theme, blockSizeXOverride, highResScaleFactorOverride, }) {
|
|
64
69
|
const { blockSize, bgColor, colorScheme: modelColorScheme, colWidth, fontSize, rowHeight, highResScaleFactor, } = model;
|
|
65
70
|
const { customColorScheme, data } = track.model;
|
|
66
71
|
const colorScheme = customColorScheme ?? modelColorScheme;
|
|
@@ -77,6 +82,7 @@ export function renderTextTrack({ model, ctx, track, offsetX, offsetY, contrastS
|
|
|
77
82
|
colorScheme,
|
|
78
83
|
contrastScheme,
|
|
79
84
|
bgColor,
|
|
85
|
+
textColor: theme.palette.text.primary,
|
|
80
86
|
colWidth,
|
|
81
87
|
rowHeight,
|
|
82
88
|
offsetX,
|
|
@@ -84,7 +90,7 @@ export function renderTextTrack({ model, ctx, track, offsetX, offsetY, contrastS
|
|
|
84
90
|
});
|
|
85
91
|
ctx.resetTransform();
|
|
86
92
|
}
|
|
87
|
-
export function renderAllTracks({ model, ctx, offsetX, contrastScheme, blockSizeXOverride, highResScaleFactorOverride, }) {
|
|
93
|
+
export function renderAllTracks({ model, ctx, offsetX, contrastScheme, theme, blockSizeXOverride, highResScaleFactorOverride, }) {
|
|
88
94
|
const { turnedOnTracks } = model;
|
|
89
95
|
let currentY = 0;
|
|
90
96
|
for (const track of turnedOnTracks) {
|
|
@@ -109,6 +115,7 @@ export function renderAllTracks({ model, ctx, offsetX, contrastScheme, blockSize
|
|
|
109
115
|
offsetX,
|
|
110
116
|
offsetY: currentY,
|
|
111
117
|
contrastScheme,
|
|
118
|
+
theme,
|
|
112
119
|
blockSizeXOverride,
|
|
113
120
|
highResScaleFactorOverride,
|
|
114
121
|
});
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"renderTracksSvg.js","sourceRoot":"","sources":["../../../src/components/tracks/renderTracksSvg.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAA;AAClD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;
|
|
1
|
+
{"version":3,"file":"renderTracksSvg.js","sourceRoot":"","sources":["../../../src/components/tracks/renderTracksSvg.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAA;AAClD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAO3D,MAAM,UAAU,oBAAoB,CAAC,EACnC,GAAG,EACH,MAAM,EACN,KAAK,EACL,QAAQ,EACR,WAAW,EACX,OAAO,EACP,SAAS,GASV;IACC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,SAAS;QACrB,QAAQ;KACT,CAAC,CAAA;IAEF,GAAG,CAAC,SAAS,GAAG,KAAK,CAAA;IACrB,KAAK,IAAI,CAAC,GAAG,MAAM,EAAE,CAAC,GAAG,IAAI,IAAI,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACxD,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;QACxB,MAAM,SAAS,GAAG,KAAK,GAAG,WAAW,CAAA;QACrC,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAA;QACtB,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,WAAW,GAAG,SAAS,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;IAC/D,CAAC;AACH,CAAC;AAED,iFAAiF;AACjF,4EAA4E;AAC5E,MAAM,UAAU,cAAc,CAAC,KAAmB,EAAE,OAAe;IACjE,OAAO,OAAO,KAAK,uBAAuB;QACxC,CAAC,CAAC,KAAK,CAAC,oBAAoB;QAC5B,CAAC,CAAC,KAAK,CAAC,YAAY,CAAA;AACxB,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,EACnC,GAAG,EACH,IAAI,EACJ,WAAW,EACX,cAAc,EACd,OAAO,EACP,SAAS,EACT,QAAQ,EACR,SAAS,EACT,OAAO,EACP,SAAS,GAYV;IACC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,SAAS;QACrB,QAAQ;KACT,CAAC,CAAA;IACF,MAAM,GAAG,GAAG,IAAI,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IACrC,MAAM,WAAW,GAAG,SAAS,IAAI,EAAE,IAAI,QAAQ,IAAI,SAAS,GAAG,CAAC,CAAA;IAEhE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,IAAI,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QAC3C,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAE,CAAA;QACtB,MAAM,KAAK,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QAClC,MAAM,KAAK,GAAG,WAAW,CAAC,KAAK,CAAC,CAAA;QAChC,MAAM,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAA;QACjC,MAAM,MAAM,GAAG,OAAO,IAAI,CAAC,CAAC,KAAK,CAAA;QACjC,IAAI,MAAM,EAAE,CAAC;YACX,GAAG,CAAC,SAAS,GAAG,KAAM,CAAA;YACtB,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;QACzC,CAAC;QACD,IAAI,WAAW,EAAE,CAAC;YAChB,2EAA2E;YAC3E,gEAAgE;YAChE,GAAG,CAAC,SAAS,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,KAAK,CAAC,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;YACvE,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,QAAQ,GAAG,CAAC,EAAE,SAAS,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;QAC3D,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,EACtC,KAAK,EACL,GAAG,EACH,KAAK,EACL,OAAO,EACP,OAAO,EACP,WAAW,EACX,kBAAkB,EAClB,0BAA0B,GAU3B;IACC,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACzD,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;IAE1D,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;IAEhC,oBAAoB,CAAC;QACnB,GAAG;QACH,MAAM,EAAE,cAAc,CAAC,KAAK,EAAE,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;QAC7C,KAAK,EAAE,KAAK,CAAC,KAAK,CAAC,QAAQ,IAAI,MAAM;QACrC,QAAQ;QACR,WAAW;QACX,OAAO;QACP,SAAS,EAAE,EAAE;KACd,CAAC,CAAA;IAEF,GAAG,CAAC,cAAc,EAAE,CAAA;AACtB,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,EAC9B,KAAK,EACL,GAAG,EACH,KAAK,EACL,OAAO,EACP,OAAO,EACP,cAAc,EACd,KAAK,EACL,kBAAkB,EAClB,0BAA0B,GAW3B;IACC,MAAM,EACJ,SAAS,EACT,OAAO,EACP,WAAW,EAAE,gBAAgB,EAC7B,QAAQ,EACR,QAAQ,EACR,SAAS,EACT,kBAAkB,GACnB,GAAG,KAAK,CAAA;IAET,MAAM,EAAE,iBAAiB,EAAE,IAAI,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAC/C,MAAM,WAAW,GAAG,iBAAiB,IAAI,gBAAgB,CAAA;IACzD,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;IAE1D,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;IAChC,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;IACxB,WAAW,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAA;IAE1B,oBAAoB,CAAC;QACnB,GAAG;QACH,IAAI;QACJ,WAAW;QACX,cAAc;QACd,OAAO;QACP,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO;QACrC,QAAQ;QACR,SAAS;QACT,OAAO;QACP,SAAS,EAAE,EAAE;KACd,CAAC,CAAA;IAEF,GAAG,CAAC,cAAc,EAAE,CAAA;AACtB,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,EAC9B,KAAK,EACL,GAAG,EACH,OAAO,EACP,cAAc,EACd,KAAK,EACL,kBAAkB,EAClB,0BAA0B,GAS3B;IACC,MAAM,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAChC,IAAI,QAAQ,GAAG,CAAC,CAAA;IAEhB,KAAK,MAAM,KAAK,IAAI,cAAc,EAAE,CAAC;QACnC,MAAM,WAAW,GAAG,KAAK,CAAC,KAAK,CAAC,MAAM,CAAA;QAEtC,IAAI,KAAK,CAAC,KAAK,CAAC,QAAQ,KAAK,SAAS,EAAE,CAAC;YACvC,uBAAuB,CAAC;gBACtB,KAAK;gBACL,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,OAAO,EAAE,QAAQ;gBACjB,WAAW;gBACX,kBAAkB;gBAClB,0BAA0B;aAC3B,CAAC,CAAA;QACJ,CAAC;aAAM,CAAC;YACN,eAAe,CAAC;gBACd,KAAK;gBACL,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,OAAO,EAAE,QAAQ;gBACjB,cAAc;gBACd,KAAK;gBACL,kBAAkB;gBAClB,0BAA0B;aAC3B,CAAC,CAAA;QACJ,CAAC;QAED,QAAQ,IAAI,WAAW,CAAA;IACzB,CAAC;AACH,CAAC"}
|
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
import React, { useCallback, useRef } from 'react';
|
|
2
2
|
import { isAlive } from '@jbrowse/mobx-state-tree';
|
|
3
3
|
import { observer } from 'mobx-react';
|
|
4
|
-
import
|
|
5
|
-
import {
|
|
6
|
-
import {
|
|
7
|
-
import
|
|
8
|
-
import {
|
|
4
|
+
import { useCanvasAutorun } from '../../useCanvasAutorun.js';
|
|
5
|
+
import { useWheelScroll } from '../../useWheelScroll.js';
|
|
6
|
+
import { referenceColor, treeHoverColor } from '../overlayColors.js';
|
|
7
|
+
import TreeCanvasBlock from './TreeCanvasBlock.js';
|
|
8
|
+
import { padding } from './renderTreeCanvas.js';
|
|
9
9
|
const TreeCanvas = observer(function ({ model }) {
|
|
10
10
|
const ref = useRef(null);
|
|
11
11
|
const { treeWidth, height, blocksY, treeAreaWidth } = model;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"TreeCanvas.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,OAAO,EAAE,MAAM,0BAA0B,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,
|
|
1
|
+
{"version":3,"file":"TreeCanvas.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,OAAO,EAAE,MAAM,0BAA0B,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;AACxD,OAAO,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAA;AACpE,OAAO,eAAe,MAAM,sBAAuB,CAAA;AACnD,OAAO,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAA;AAI/C,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC3D,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,GAAG,cAAc,CAAC,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,CAAA;IAErE,MAAM,YAAY,GAAG,gBAAgB,CACnC,GAAG,CAAC,EAAE;QACJ,IAAI,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;YACnB,MAAM,EACJ,SAAS,EACT,aAAa,EAAE,CAAC,EAChB,MAAM,EAAE,CAAC,EACT,OAAO,EAAE,EAAE,EACX,QAAQ,EACR,iBAAiB,EACjB,iBAAiB,GAClB,GAAG,KAAK,CAAA;YACT,GAAG,CAAC,cAAc,EAAE,CAAA;YACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;YAEzB,oEAAoE;YACpE,6DAA6D;YAC7D,MAAM,OAAO,GAAG,CAAC,KAAa,EAAE,EAAE;gBAChC,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,KAAK,GAAG,SAAS,GAAG,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAA;YACvD,CAAC,CAAA;YAED,IAAI,iBAAiB,KAAK,SAAS,EAAE,CAAC;gBACpC,GAAG,CAAC,SAAS,GAAG,cAAc,CAAA;gBAC9B,OAAO,CAAC,iBAAiB,CAAC,CAAA;YAC5B,CAAC;YAED,GAAG,CAAC,SAAS,GAAG,cAAc,CAAA;YAC9B,KAAK,MAAM,KAAK,IAAI,iBAAiB,EAAE,CAAC;gBACtC,OAAO,CAAC,KAAK,CAAC,CAAA;YAChB,CAAC;YACD,IACE,QAAQ,KAAK,SAAS;gBACtB,QAAQ,KAAK,iBAAiB;gBAC9B,CAAC,iBAAiB,CAAC,QAAQ,CAAC,QAAQ,CAAC,EACrC,CAAC;gBACD,OAAO,CAAC,QAAQ,CAAC,CAAA;YACnB,CAAC;QACH,CAAC;IACH,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IAED,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,SAAS,EACpB,YAAY,EAAE,KAAK,CAAC,EAAE;YACpB,KAAK,CAAC,cAAc,EAAE,CAAA;QACxB,CAAC,EACD,KAAK,EAAE;YACL,MAAM;YACN,QAAQ,EAAE,UAAU;YACpB,KAAK,EAAE,SAAS,GAAG,OAAO;SAC3B;QAEA,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CACpB,oBAAC,eAAe,IAAC,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,GAAI,CAC9D,CAAC;QACF,gCACE,GAAG,EAAE,YAAY,EACjB,KAAK,EAAE,aAAa,EACpB,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,KAAK,EAAE,aAAa;gBACpB,MAAM;gBACN,MAAM,EAAE,IAAI;gBACZ,aAAa,EAAE,MAAM;aACtB,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
|
|
@@ -2,11 +2,11 @@ import React, { useState } from 'react';
|
|
|
2
2
|
import { makeStyles } from '@jbrowse/core/util/tss-react';
|
|
3
3
|
import { useTheme } from '@mui/material';
|
|
4
4
|
import { observer } from 'mobx-react';
|
|
5
|
-
import
|
|
6
|
-
import
|
|
7
|
-
import
|
|
8
|
-
import {
|
|
9
|
-
import {
|
|
5
|
+
import { useCanvasAutorun } from '../../useCanvasAutorun.js';
|
|
6
|
+
import TreeBranchMenu from './TreeBranchMenu.js';
|
|
7
|
+
import TreeNodeMenu from './TreeNodeMenu.js';
|
|
8
|
+
import { padding, renderTreeCanvas } from './renderTreeCanvas.js';
|
|
9
|
+
import { useTreeHover } from './useTreeHover.js';
|
|
10
10
|
const useStyles = makeStyles()(theme => ({
|
|
11
11
|
tooltip: {
|
|
12
12
|
position: 'fixed',
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"TreeCanvasBlock.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvasBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AACjE,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAA;
|
|
1
|
+
{"version":3,"file":"TreeCanvasBlock.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvasBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,YAAY,MAAM,mBAAoB,CAAA;AAC7C,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AACjE,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAA;AAIhD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,QAAQ,EAAE,OAAO;QACjB,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,KAAK;QACb,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;QACxC,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK;QACjC,OAAO,EAAE,SAAS;QAClB,YAAY,EAAE,CAAC;QACf,QAAQ,EAAE,EAAE;QACZ,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,GAAG;QACb,QAAQ,EAAE,QAAQ;QAClB,YAAY,EAAE,UAAU;KACzB;IACD,KAAK,EAAE;QACL,QAAQ,EAAE,UAAU;QACpB,aAAa,EAAE,MAAM;QACrB,MAAM,EAAE,GAAG;QACX,UAAU,EAAE,iBAAiB;KAC9B;CACF,CAAC,CAAC,CAAA;AASH,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,EAAY,CAAA;IACxD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAY,CAAA;IACpD,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,OAAO,EAAE,WAAW,EAAE,YAAY,EAAE,GAC7D,YAAY,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAA;IAElC,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACvE,MAAM,KAAK,GAAG,aAAa,GAAG,OAAO,CAAA;IACrC,MAAM,MAAM,GAAG,SAAS,CAAA;IAExB,MAAM,GAAG,GAAG,gBAAgB,CAC1B,GAAG,CAAC,EAAE;QACJ,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,SAAS,CACX,CAAC,EACD,CAAC,EACD,KAAK,GAAG,kBAAkB,EAC1B,MAAM,GAAG,kBAAkB,CAC5B,CAAA;QACD,gBAAgB,CAAC;YACf,GAAG;YACH,KAAK;YACL,OAAO;YACP,QAAQ;YACR,KAAK;SACN,CAAC,CAAA;IACJ,CAAC,EACD,CAAC,KAAK,EAAE,QAAQ,EAAE,OAAO,EAAE,KAAK,CAAC,CAClC,CAAA;IAED,MAAM,KAAK,GAAG;QACZ,KAAK;QACL,MAAM;QACN,GAAG,EAAE,OAAO,GAAG,OAAO;QACtB,IAAI,EAAE,CAAC;QACP,QAAQ,EAAE,UAAU;KACZ,CAAA;IAEV,OAAO,CACL;QACG,UAAU,CAAC,CAAC,CAAC,CACZ,oBAAC,cAAc,IACb,IAAI,EAAE,UAAU,EAChB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,GAAG,EAAE;gBACZ,aAAa,CAAC,SAAS,CAAC,CAAA;YAC1B,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI;QAEP,QAAQ,CAAC,CAAC,CAAC,CACV,oBAAC,YAAY,IACX,IAAI,EAAE,QAAQ,EACd,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,GAAG,EAAE;gBACZ,WAAW,CAAC,SAAS,CAAC,CAAA;YACxB,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI;QAER,gCACE,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,KAAK,GAAG,kBAAkB,EACjC,MAAM,EAAE,MAAM,GAAG,kBAAkB,EACnC,KAAK,EAAE,EAAE,GAAG,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,EAAE,EAC5D,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,WAAW,CAAC,KAAK,CAAC,CAAA;YACpB,CAAC,EACD,YAAY,EAAE,GAAG,EAAE;gBACjB,YAAY,EAAE,CAAA;YAChB,CAAC,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,CAAA;gBAC5B,IAAI,KAAK,EAAE,CAAC;oBACV,MAAM,IAAI,GAAG;wBACX,CAAC,EAAE,KAAK,CAAC,OAAO;wBAChB,CAAC,EAAE,KAAK,CAAC,OAAO;wBAChB,EAAE,EAAE,KAAK,CAAC,EAAE;wBACZ,IAAI,EAAE,KAAK,CAAC,IAAI;qBACjB,CAAA;oBACD,IAAI,KAAK,CAAC,MAAM,EAAE,CAAC;wBACjB,aAAa,CAAC,IAAI,CAAC,CAAA;oBACrB,CAAC;yBAAM,CAAC;wBACN,WAAW,CAAC,IAAI,CAAC,CAAA;oBACnB,CAAC;gBACH,CAAC;YACH,CAAC,GACD;QAGD,OAAO,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAC5B,6BACE,SAAS,EAAE,OAAO,CAAC,KAAK,EACxB,KAAK,EAAE;gBACL,IAAI,EAAE,OAAO,CAAC,IAAI;gBAClB,GAAG,EAAE,OAAO,CAAC,IAAI,GAAG,OAAO;gBAC3B,KAAK,EAAE,OAAO,CAAC,IAAI,GAAG,OAAO,CAAC,IAAI;gBAClC,MAAM,EAAE,OAAO,CAAC,IAAI,GAAG,OAAO,CAAC,IAAI;aACpC,GACD,CACH,CAAC,CAAC,CAAC,IAAI;QAEP,OAAO,CAAC,CAAC,CAAC,CACT,6BACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE,EAAE,IAAI,EAAE,OAAO,CAAC,OAAO,GAAG,EAAE,EAAE,GAAG,EAAE,OAAO,CAAC,OAAO,GAAG,EAAE,EAAE,IAE/D,OAAO,CAAC,IAAI,CACT,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
|
|
@@ -2,7 +2,7 @@ import React, { lazy } from 'react';
|
|
|
2
2
|
import { Menu, MenuItem } from '@mui/material';
|
|
3
3
|
import { observer } from 'mobx-react';
|
|
4
4
|
// lazies
|
|
5
|
-
const TreeNodeInfoDialog = lazy(() => import(
|
|
5
|
+
const TreeNodeInfoDialog = lazy(() => import('./dialogs/TreeNodeInfoDialog.js'));
|
|
6
6
|
const TreeMenu = observer(function ({ node, onClose, model, }) {
|
|
7
7
|
const { collapsed } = model;
|
|
8
8
|
const { name, id } = node;
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
2
|
import { observer } from 'mobx-react';
|
|
3
|
-
import TreeCanvas from
|
|
3
|
+
import TreeCanvas from './TreeCanvas.js';
|
|
4
4
|
const TreePanel = observer(function ({ model }) {
|
|
5
5
|
const { treeAreaWidth } = model;
|
|
6
6
|
return (React.createElement("div", { style: { overflow: 'hidden', flexShrink: 0, width: treeAreaWidth } },
|
|
@@ -4,7 +4,7 @@ import BaseCard from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard
|
|
|
4
4
|
import { Dialog } from '@jbrowse/core/ui';
|
|
5
5
|
import { DialogContent } from '@mui/material';
|
|
6
6
|
import { observer } from 'mobx-react';
|
|
7
|
-
import SequenceTextArea from
|
|
7
|
+
import SequenceTextArea from '../../SequenceTextArea.js';
|
|
8
8
|
const TreeNodeInfoDialog = observer(function ({ info, model, nodeName, onClose, }) {
|
|
9
9
|
const { treeMetadata, rows } = model;
|
|
10
10
|
const metadata = treeMetadata[nodeName];
|
|
@@ -1,7 +1,7 @@
|
|
|
1
|
-
import type { ClickMapIndex } from './clickMap.ts';
|
|
2
1
|
import type { HierarchyNode } from '../../hierarchy.ts';
|
|
3
2
|
import type { MsaViewModel } from '../../model.ts';
|
|
4
3
|
import type { RenderCtx } from '../renderCtx.ts';
|
|
4
|
+
import type { ClickMapIndex } from './clickMap.ts';
|
|
5
5
|
import type { Theme } from '@mui/material';
|
|
6
6
|
export declare const padding = 600;
|
|
7
7
|
export declare function getNodeX(node: HierarchyNode, showBranchLen: boolean, maxBranchLen: number, maxDepthToLeaf: number): number | undefined;
|
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
import { calcDepthToLeaf, forEachDescendant, forEachLink, } from
|
|
2
|
-
import { setFontSize } from
|
|
3
|
-
import { getVisibleLeaves } from
|
|
1
|
+
import { calcDepthToLeaf, forEachDescendant, forEachLink, } from '../../hierarchy.js';
|
|
2
|
+
import { setFontSize } from '../../setFontSize.js';
|
|
3
|
+
import { getVisibleLeaves } from '../getVisibleLeaves.js';
|
|
4
4
|
export const padding = 600;
|
|
5
5
|
const extendBounds = 5;
|
|
6
6
|
const radius = 2.5;
|
|
@@ -1,7 +1,7 @@
|
|
|
1
|
-
import type React from 'react';
|
|
2
1
|
import { ClickMapIndex } from './clickMap.ts';
|
|
3
|
-
import type { ClickEntry } from './clickMap.ts';
|
|
4
2
|
import type { MsaViewModel } from '../../model.ts';
|
|
3
|
+
import type { ClickEntry } from './clickMap.ts';
|
|
4
|
+
import type React from 'react';
|
|
5
5
|
export interface TreeHoverTarget extends ClickEntry {
|
|
6
6
|
clientX: number;
|
|
7
7
|
clientY: number;
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { useRef, useState } from 'react';
|
|
2
|
-
import { ClickMapIndex } from
|
|
2
|
+
import { ClickMapIndex } from './clickMap.js';
|
|
3
3
|
/**
|
|
4
4
|
* Owns hit-testing for one tree block: the spatial index the render pass fills
|
|
5
5
|
* in, the entry currently under the pointer, and the model hover state that the
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"useTreeHover.js","sourceRoot":"","sources":["../../../src/components/tree/useTreeHover.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;
|
|
1
|
+
{"version":3,"file":"useTreeHover.js","sourceRoot":"","sources":["../../../src/components/tree/useTreeHover.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAExC,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAW7C;;;;;GAKG;AACH,MAAM,UAAU,YAAY,CAAC,EAC3B,KAAK,EACL,OAAO,GAIR;IACC,MAAM,WAAW,GAAG,MAAM,CAAgB,IAAI,CAAC,CAAA;IAC/C,WAAW,CAAC,OAAO,KAAK,IAAI,aAAa,EAAE,CAAA;IAC3C,MAAM,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAA;IACpC,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAmB,CAAA;IAEzD,+EAA+E;IAC/E,uDAAuD;IACvD,SAAS,OAAO,CAAC,KAAuB;QACtC,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QACnC,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,GAAG,OAAO,CAAA;QAC7C,MAAM,OAAO,GAAG,QAAQ,CAAC,MAAM,CAAC;YAC9B,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,CAAC,GAAG,CAAC;YACX,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,CAAC,GAAG,CAAC;SACZ,CAAC,CAAA;QACF,OAAO,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,OAAO,CAAC,CAAC,CAAC,CAAA;IAC3D,CAAC;IAED,SAAS,WAAW,CAAC,KAAuB;QAC1C,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,CAAA;QAC5B,UAAU,CACR,KAAK;YACH,CAAC,CAAC,EAAE,GAAG,KAAK,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE;YAC9D,CAAC,CAAC,SAAS,CACd,CAAA;QACD,2EAA2E;QAC3E,qDAAqD;QACrD,KAAK,CAAC,kBAAkB,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;QACnC,KAAK,CAAC,WAAW,CACf,SAAS,EACT,KAAK,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CACvE,CAAA;IACH,CAAC;IAED,SAAS,YAAY;QACnB,UAAU,CAAC,SAAS,CAAC,CAAA;QACrB,KAAK,CAAC,kBAAkB,CAAC,SAAS,CAAC,CAAA;QACnC,KAAK,CAAC,WAAW,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;IACzC,CAAC;IAED,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,OAAO,EAAE,WAAW,EAAE,YAAY,EAAE,CAAA;AAClE,CAAC"}
|
package/dist/createPaletteMap.js
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { colord } from 'colord';
|
|
2
|
-
import palettes from
|
|
2
|
+
import palettes from './ggplotPalettes.js';
|
|
3
3
|
/**
|
|
4
4
|
* Creates a map from keys to colors. Up to the largest ggplot palette (8 keys)
|
|
5
5
|
* we use the hand-picked ggplot colors; beyond that — e.g. a gene-structure
|
package/dist/fetchUtils.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"fetchUtils.js","sourceRoot":"","sources":["../src/fetchUtils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAiB9E;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,qBAAqB,CACzC,GAAe,EACf,SAAyC,EACzC,
|
|
1
|
+
{"version":3,"file":"fetchUtils.js","sourceRoot":"","sources":["../src/fetchUtils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAiB9E;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,qBAAqB,CACzC,GAAe,EACf,SAAyC,EACzC,OAAO,GAAoB,sBAAsB;IAEjD,MAAM,UAAU,GAAG,IAAI,eAAe,EAAE,CAAA;IACxC,IAAI,CAAC;QACH,OAAO,MAAM,OAAO,CAAC,GAAG,EAAE;YACxB,MAAM,EAAE,UAAU,CAAC,MAAM;YACzB,cAAc,EAAE,MAAM,CAAC,EAAE;gBACvB,MAAM,GAAG,GAAG,iBAAiB,CAAC,MAAM,CAAC,CAAA;gBACrC,SAAS,CACP,GAAG;oBACD,CAAC,CAAC;wBACE,GAAG;wBACH,QAAQ,EAAE,GAAG,EAAE;4BACb,UAAU,CAAC,KAAK,EAAE,CAAA;wBACpB,CAAC;qBACF;oBACH,CAAC,CAAC,SAAS,CACd,CAAA;YACH,CAAC;SACF,CAAC,CAAA;IACJ,CAAC;YAAS,CAAC;QACT,SAAS,CAAC,SAAS,CAAC,CAAA;IACtB,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,OAAO,CAAC,GAAW,EAAE,IAAkB;IAC3D,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;IAEvC,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,MAAM,IAAI,KAAK,CACb,QAAQ,QAAQ,CAAC,MAAM,aAAa,GAAG,IAAI,MAAM,QAAQ,CAAC,IAAI,EAAE,EAAE,CACnE,CAAA;IACH,CAAC;IAED,OAAO,QAAQ,CAAA;AACjB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,GAAW,EAAE,IAAkB;IAC7D,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;IACzC,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAA;AACxB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,SAAS,CAAI,GAAW,EAAE,IAAkB;IAChE,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;IACzC,OAAO,QAAQ,CAAC,IAAI,EAAO,CAAA;AAC7B,CAAC;AAED,MAAM,UAAU,OAAO,CAAC,IAAY,EAAE,MAAoB;IACxD,OAAO,IAAI,OAAO,CAAO,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QAC3C,IAAI,MAAM,EAAE,OAAO,EAAE,CAAC;YACpB,MAAM,CAAC,IAAI,YAAY,CAAC,SAAS,EAAE,YAAY,CAAC,CAAC,CAAA;QACnD,CAAC;aAAM,CAAC;YACN,MAAM,EAAE,GAAG,UAAU,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;YACpC,MAAM,EAAE,gBAAgB,CAAC,OAAO,EAAE,GAAG,EAAE;gBACrC,YAAY,CAAC,EAAE,CAAC,CAAA;gBAChB,MAAM,CAAC,IAAI,YAAY,CAAC,SAAS,EAAE,YAAY,CAAC,CAAC,CAAA;YACnD,CAAC,CAAC,CAAA;QACJ,CAAC;IACH,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,CAAU;IACrC,OAAO,CAAC,YAAY,YAAY,IAAI,CAAC,CAAC,IAAI,KAAK,YAAY,CAAA;AAC7D,CAAC"}
|
package/dist/index.js
CHANGED
|
@@ -5,8 +5,8 @@
|
|
|
5
5
|
// Those plugins also reach into the MsaViewModel instance at runtime; the model
|
|
6
6
|
// members they rely on (e.g. mouseCol/setMousePos, setHighlightedColumns,
|
|
7
7
|
// seqPosToVisibleCol/visibleColToSeqPos) are flagged inline in model.ts.
|
|
8
|
-
export { renderToSvg } from
|
|
9
|
-
export { default as MSAView } from
|
|
10
|
-
export { default as MSAViewer } from
|
|
11
|
-
export { default as MSAModelF } from
|
|
8
|
+
export { renderToSvg } from './renderToSvg.js';
|
|
9
|
+
export { default as MSAView } from './components/Loading.js';
|
|
10
|
+
export { default as MSAViewer } from './components/MSAViewer.js';
|
|
11
|
+
export { default as MSAModelF } from './model.js';
|
|
12
12
|
//# sourceMappingURL=index.js.map
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { getSession } from '@jbrowse/core/util';
|
|
2
|
-
import { isAbortError, jsonfetch, textfetch, timeout } from
|
|
2
|
+
import { isAbortError, jsonfetch, textfetch, timeout } from './fetchUtils.js';
|
|
3
3
|
const base = 'https://www.ebi.ac.uk/Tools/services/rest';
|
|
4
4
|
async function runInterProScan({ seq, onProgress, onJobId, programs, model, signal, }) {
|
|
5
5
|
const jobId = await textfetch(`${base}/iprscan5/run`, {
|
package/dist/model/msaModel.js
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { types } from '@jbrowse/mobx-state-tree';
|
|
2
|
-
import { defaultBgColor, defaultColorSchemeName, defaultShowColumnStats, } from
|
|
3
|
-
import { stripDefault } from
|
|
2
|
+
import { defaultBgColor, defaultColorSchemeName, defaultShowColumnStats, } from '../constants.js';
|
|
3
|
+
import { stripDefault } from '../stripDefault.js';
|
|
4
4
|
const msaFormats = ['stockholm', 'a3m', 'fasta', 'emf', 'clustal'];
|
|
5
5
|
/**
|
|
6
6
|
* #stateModel MSAModel
|
package/dist/model/treeModel.js
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { types } from '@jbrowse/mobx-state-tree';
|
|
2
|
-
import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawTree, defaultLabelsAlignRight, defaultShowBranchLen, defaultTreeAreaWidth, defaultTreeWidth, } from
|
|
3
|
-
import { stripDefault } from
|
|
2
|
+
import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawTree, defaultLabelsAlignRight, defaultShowBranchLen, defaultTreeAreaWidth, defaultTreeWidth, } from '../constants.js';
|
|
3
|
+
import { stripDefault } from '../stripDefault.js';
|
|
4
4
|
/**
|
|
5
5
|
* #stateModel Tree
|
|
6
6
|
*/
|