react-msaview 5.6.1 → 5.6.2

package/dist/components/msa/renderMSABlock.js

@@ -1,7 +1,7 @@
-import { getVisibleLeaves } from "./getVisibleLeaves.js";
 import { visibleColRange } from "./visibleColRange.js";
 import { setFontSize } from "../../setFontSize.js";
 import { adjustColorForContrast } from "../../util.js";
+import { getVisibleLeaves } from "../getVisibleLeaves.js";
 export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }) {
     const { colWidth, blockSize, rowHeight, fontSize, highResScaleFactor, actuallyShowDomains, bgColor, } = model;
     const k = highResScaleFactorOverride ?? highResScaleFactor;
@@ -23,28 +23,19 @@ export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, t
     const referenceSeq = relativeTo
         ? columns.get(relativeTo)?.slice(xStart, xEnd)
         : null;
-    if (!actuallyShowDomains) {
-        drawTilesAndText({
-            model,
-            ctx,
-            theme,
-            contrastScheme,
-            xStart,
-            xEnd,
-            visibleLeaves,
-            referenceSeq,
-        });
-    }
-    else {
-        drawText({
-            model,
-            ctx,
-            xStart,
-            xEnd,
-            visibleLeaves,
-            referenceSeq,
-        });
-    }
+    drawTilesAndText({
+        model,
+        ctx,
+        theme,
+        contrastScheme,
+        xStart,
+        xEnd,
+        visibleLeaves,
+        referenceSeq,
+        // when domains are shown the background tiles come from
+        // renderBoxFeatureCanvasBlock, so only the letters are drawn here
+        drawTiles: !actuallyShowDomains,
+    });
     drawInsertionIndicators({
         model,
         ctx,
@@ -54,82 +45,92 @@ export function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, t
     });
     ctx.resetTransform();
 }
-function drawTilesAndText({ model, ctx, theme, contrastScheme, visibleLeaves, xStart, xEnd, referenceSeq, }) {
-    const { bgColor, colorSchemeName, colorScheme, columns, colWidth, rowHeight, relativeTo, showMsaLetters, colClustalX, colConsensus, } = model;
-    const isClustalX = colorSchemeName === 'clustalx_protein_dynamic';
-    const isPercentIdentity = colorSchemeName === 'percent_identity_dynamic';
-    if (!bgColor && !showMsaLetters) {
-        return;
+// Per-cell tile color for the active scheme. The scheme is fixed for the whole
+// block, so resolve which rule applies once rather than re-testing the scheme
+// name inside the innermost loop.
+function tileColorFn(model) {
+    const { colorSchemeName, colorScheme, colClustalX, colConsensus } = model;
+    if (colorSchemeName === 'clustalx_protein_dynamic') {
+        return (col, letter) => colClustalX[col][letter];
     }
-    const offsetXAligned = xStart * colWidth;
-    const halfColWidth = colWidth / 2;
-    const quarterRowHeight = rowHeight / 4;
-    for (let i = 0, l1 = visibleLeaves.length; i < l1; i++) {
-        const node = visibleLeaves[i];
-        const { name } = node.data;
-        const y = node.x;
-        const str = columns.get(name)?.slice(xStart, xEnd);
-        if (!str) {
-            continue;
-        }
-        const tileY = y - rowHeight;
-        const textY = y - quarterRowHeight;
-        for (let j = 0, l2 = str.length; j < l2; j++) {
-            const letter = str[j];
-            const x = j * colWidth + offsetXAligned;
-            const isMatchingReference = referenceSeq && name !== relativeTo && letter === referenceSeq[j];
-            let color;
-            if (isClustalX) {
-                color = colClustalX[xStart + j][letter];
-            }
-            else if (isPercentIdentity) {
-                const consensus = colConsensus[xStart + j];
-                color = letter === consensus.letter ? consensus.color : undefined;
-            }
-            else {
-                color = colorScheme[letter];
-            }
-            if (bgColor) {
-                ctx.fillStyle = isMatchingReference
-                    ? theme.palette.action.hover
-                    : color || theme.palette.background.default;
-                ctx.fillRect(x, tileY, colWidth, rowHeight);
-            }
-            if (showMsaLetters) {
-                ctx.fillStyle = bgColor
-                    ? (contrastScheme[letter] ?? 'black')
-                    : color
-                        ? adjustColorForContrast(color, theme.palette.background.default)
-                        : theme.palette.text.primary;
-                ctx.fillText(isMatchingReference ? '.' : letter, x + halfColWidth, textY);
-            }
-        }
+    if (colorSchemeName === 'percent_identity_dynamic') {
+        return (col, letter) => {
+            const consensus = colConsensus[col];
+            return letter === consensus.letter ? consensus.color : undefined;
+        };
     }
+    return (_col, letter) => colorScheme[letter];
 }
-// When domains are shown the background tiles come from renderBoxFeatureCanvasBlock,
-// so we only need to draw text here.
-function drawText({ model, ctx, visibleLeaves, xStart, xEnd, referenceSeq, }) {
-    const { showMsaLetters, columns, colWidth, rowHeight, relativeTo } = model;
-    if (!showMsaLetters) {
-        return;
-    }
-    const offsetXAligned = xStart * colWidth;
-    const halfColWidth = colWidth / 2;
-    const quarterRowHeight = rowHeight / 4;
-    // note: -rowHeight/4 matches +rowHeight/4 in tree
-    ctx.fillStyle = 'black';
-    for (let i = 0, l1 = visibleLeaves.length; i < l1; i++) {
-        const node = visibleLeaves[i];
-        const { name } = node.data;
-        const y = node.x - quarterRowHeight;
-        const str = columns.get(name)?.slice(xStart, xEnd);
-        if (!str) {
-            continue;
-        }
-        for (let j = 0, l2 = str.length; j < l2; j++) {
-            const letter = str[j];
-            const isMatchingReference = referenceSeq && name !== relativeTo && letter === referenceSeq[j];
-            ctx.fillText(isMatchingReference ? '.' : letter, j * colWidth + offsetXAligned + halfColWidth, y);
+// Letter color to use over a domain box, keyed by accession. Domain fills come
+// from a categorical palette that has no fixed lightness, so ask the theme for a
+// readable text color per fill instead of assuming dark-on-light.
+function domainLetterColors(model, theme) {
+    return new Map(Object.entries(model.fillPalette).map(([accession, fill]) => [
+        accession,
+        theme.palette.getContrastText(fill),
+    ]));
+}
+function drawTilesAndText({ model, ctx, theme, contrastScheme, visibleLeaves, xStart, xEnd, referenceSeq, drawTiles, }) {
+    const { bgColor, columns, colWidth, rowHeight, relativeTo, showMsaLetters, subFeatureRows, domainBandsByStart, } = model;
+    const tiles = drawTiles && bgColor;
+    if (tiles || showMsaLetters) {
+        const tileColor = tileColorFn(model);
+        const offsetXAligned = xStart * colWidth;
+        const halfColWidth = colWidth / 2;
+        // note: -rowHeight/4 matches +rowHeight/4 in tree
+        const quarterRowHeight = rowHeight / 4;
+        // with the tiles coming from the domain overlay instead, letters sit either
+        // on a domain box or on the plain background; sub-row layout stacks the boxes
+        // above the letters, so those rows are all plain background
+        const overDomains = !drawTiles && !subFeatureRows;
+        const domainColors = overDomains
+            ? domainLetterColors(model, theme)
+            : undefined;
+        for (let i = 0, l1 = visibleLeaves.length; i < l1; i++) {
+            const node = visibleLeaves[i];
+            const { name } = node.data;
+            const y = node.x;
+            const str = columns.get(name)?.slice(xStart, xEnd);
+            if (str) {
+                const tileY = y - rowHeight;
+                const textY = y - quarterRowHeight;
+                const bands = overDomains ? domainBandsByStart.get(name) : undefined;
+                let band = 0;
+                for (let j = 0, l2 = str.length; j < l2; j++) {
+                    const col = xStart + j;
+                    const letter = str[j];
+                    const x = j * colWidth + offsetXAligned;
+                    const isMatchingReference = referenceSeq && name !== relativeTo && letter === referenceSeq[j];
+                    const color = tileColor(col, letter);
+                    if (tiles) {
+                        ctx.fillStyle = isMatchingReference
+                            ? theme.palette.action.hover
+                            : color || theme.palette.background.default;
+                        ctx.fillRect(x, tileY, colWidth, rowHeight);
+                    }
+                    if (showMsaLetters) {
+                        // bands are sorted by start column and the sweep is left to right,
+                        // so one forward-only cursor finds the band covering each column
+                        while (bands && band < bands.length && bands[band].endCol <= col) {
+                            band++;
+                        }
+                        const covering = bands?.[band];
+                        ctx.fillStyle =
+                            covering && covering.startCol <= col
+                                ? // on top of a domain box: contrast against the box fill
+                                    domainColors.get(covering.annotation.accession)
+                                : tiles
+                                    ? // on top of a colored tile
+                                        (contrastScheme[letter] ?? 'black')
+                                    : !drawTiles || !color
+                                        ? // plain background, uncolored letters
+                                            theme.palette.text.primary
+                                        : // letter-color mode: darken/lighten to stay readable
+                                            adjustColorForContrast(color, theme.palette.background.default);
+                        ctx.fillText(isMatchingReference ? '.' : letter, x + halfColWidth, textY);
+                    }
+                }
+            }
         }
     }
 }

package/dist/components/msa/renderMSABlock.js.map

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+{"version":3,"file":"renderMSABlock.js","sourceRoot":"","sources":["../../../src/components/msa/renderMSABlock.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAA;AACtD,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAA;AAClD,OAAO,EAAE,sBAAsB,EAAE,MAAM,eAAe,CAAA;AACtD,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAA;AAQzD,MAAM,UAAU,cAAc,CAAC,EAC7B,KAAK,EACL,OAAO,EACP,OAAO,EACP,cAAc,EACd,GAAG,EACH,KAAK,EACL,0BAA0B,EAC1B,kBAAkB,EAClB,kBAAkB,GAWnB;IACC,MAAM,EACJ,QAAQ,EACR,SAAS,EACT,SAAS,EACT,QAAQ,EACR,kBAAkB,EAClB,mBAAmB,EACnB,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,0BAA0B,IAAI,kBAAkB,CAAA;IAC1D,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,MAAM,EAAE,GAAG,kBAAkB,IAAI,SAAS,CAAA;IAC1C,GAAG,CAAC,cAAc,EAAE,CAAA;IACpB,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;IACf,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,SAAS,GAAG,CAAC,GAAG,OAAO,CAAC,CAAA;IAChD,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;IACxB,GAAG,CAAC,YAAY,GAAG,YAAY,CAAA;IAC/B,WAAW,CAAC,GAAG,EAAE,QAAQ,EAAE,CAAC,OAAO,CAAC,CAAA;IAEpC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,eAAe,CAAC;QACvC,OAAO;QACP,UAAU,EAAE,EAAE;QACd,QAAQ;KACT,CAAC,CAAA;IACF,MAAM,aAAa,GAAG,gBAAgB,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,UAAU,EAAE,EAAE,EAAE,CAAC,CAAA;IAC1E,MAAM,EAAE,UAAU,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACrC,MAAM,YAAY,GAAG,UAAU;QAC7B,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC;QAC9C,CAAC,CAAC,IAAI,CAAA;IAER,gBAAgB,CAAC;QACf,KAAK;QACL,GAAG;QACH,KAAK;QACL,cAAc;QACd,MAAM;QACN,IAAI;QACJ,aAAa;QACb,YAAY;QACZ,wDAAwD;QACxD,kEAAkE;QAClE,SAAS,EAAE,CAAC,mBAAmB;KAChC,CAAC,CAAA;IACF,uBAAuB,CAAC;QACtB,KAAK;QACL,GAAG;QACH,MAAM;QACN,IAAI;QACJ,aAAa;KACd,CAAC,CAAA;IACF,GAAG,CAAC,cAAc,EAAE,CAAA;AACtB,CAAC;AAED,+EAA+E;AAC/E,8EAA8E;AAC9E,kCAAkC;AAClC,SAAS,WAAW,CAAC,KAAmB;IACtC,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,WAAW,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IACzE,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,GAAG,CAAE,CAAC,MAAM,CAAC,CAAA;IACnE,CAAC;IACD,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE;YACrC,MAAM,SAAS,GAAG,YAAY,CAAC,GAAG,CAAE,CAAA;YACpC,OAAO,MAAM,KAAK,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAA;QAClE,CAAC,CAAA;IACH,CAAC;IACD,OAAO,CAAC,IAAY,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;AAC9D,CAAC;AAED,+EAA+E;AAC/E,iFAAiF;AACjF,kEAAkE;AAClE,SAAS,kBAAkB,CAAC,KAAmB,EAAE,KAAY;IAC3D,OAAO,IAAI,GAAG,CACZ,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,IAAI,CAAC,EAAE,EAAE,CAAC;QAC3D,SAAS;QACT,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,IAAI,CAAC;KACpC,CAAC,CACH,CAAA;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,EACxB,KAAK,EACL,GAAG,EACH,KAAK,EACL,cAAc,EACd,aAAa,EACb,MAAM,EACN,IAAI,EACJ,YAAY,EACZ,SAAS,GAWV;IACC,MAAM,EACJ,OAAO,EACP,OAAO,EACP,QAAQ,EACR,SAAS,EACT,UAAU,EACV,cAAc,EACd,cAAc,EACd,kBAAkB,GACnB,GAAG,KAAK,CAAA;IAET,MAAM,KAAK,GAAG,SAAS,IAAI,OAAO,CAAA;IAClC,IAAI,KAAK,IAAI,cAAc,EAAE,CAAC;QAC5B,MAAM,SAAS,GAAG,WAAW,CAAC,KAAK,CAAC,CAAA;QACpC,MAAM,cAAc,GAAG,MAAM,GAAG,QAAQ,CAAA;QACxC,MAAM,YAAY,GAAG,QAAQ,GAAG,CAAC,CAAA;QACjC,kDAAkD;QAClD,MAAM,gBAAgB,GAAG,SAAS,GAAG,CAAC,CAAA;QACtC,4EAA4E;QAC5E,8EAA8E;QAC9E,4DAA4D;QAC5D,MAAM,WAAW,GAAG,CAAC,SAAS,IAAI,CAAC,cAAc,CAAA;QACjD,MAAM,YAAY,GAAG,WAAW;YAC9B,CAAC,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,CAAC;YAClC,CAAC,CAAC,SAAS,CAAA;QAEb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,aAAa,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;YACvD,MAAM,IAAI,GAAG,aAAa,CAAC,CAAC,CAAE,CAAA;YAC9B,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,IAAI,CAAA;YAC1B,MAAM,CAAC,GAAG,IAAI,CAAC,CAAE,CAAA;YACjB,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,IAAI,GAAG,EAAE,CAAC;gBACR,MAAM,KAAK,GAAG,CAAC,GAAG,SAAS,CAAA;gBAC3B,MAAM,KAAK,GAAG,CAAC,GAAG,gBAAgB,CAAA;gBAClC,MAAM,KAAK,GAAG,WAAW,CAAC,CAAC,CAAC,kBAAkB,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;gBACpE,IAAI,IAAI,GAAG,CAAC,CAAA;gBAEZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;oBAC7C,MAAM,GAAG,GAAG,MAAM,GAAG,CAAC,CAAA;oBACtB,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAE,CAAA;oBACtB,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,GAAG,cAAc,CAAA;oBACvC,MAAM,mBAAmB,GACvB,YAAY,IAAI,IAAI,KAAK,UAAU,IAAI,MAAM,KAAK,YAAY,CAAC,CAAC,CAAC,CAAA;oBACnE,MAAM,KAAK,GAAG,SAAS,CAAC,GAAG,EAAE,MAAM,CAAC,CAAA;oBAEpC,IAAI,KAAK,EAAE,CAAC;wBACV,GAAG,CAAC,SAAS,GAAG,mBAAmB;4BACjC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK;4BAC5B,CAAC,CAAC,KAAK,IAAI,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,CAAA;wBAC7C,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;oBAC7C,CAAC;oBAED,IAAI,cAAc,EAAE,CAAC;wBACnB,mEAAmE;wBACnE,iEAAiE;wBACjE,OAAO,KAAK,IAAI,IAAI,GAAG,KAAK,CAAC,MAAM,IAAI,KAAK,CAAC,IAAI,CAAE,CAAC,MAAM,IAAI,GAAG,EAAE,CAAC;4BAClE,IAAI,EAAE,CAAA;wBACR,CAAC;wBACD,MAAM,QAAQ,GAAG,KAAK,EAAE,CAAC,IAAI,CAAC,CAAA;wBAC9B,GAAG,CAAC,SAAS;4BACX,QAAQ,IAAI,QAAQ,CAAC,QAAQ,IAAI,GAAG;gCAClC,CAAC,CAAC,wDAAwD;oCACxD,YAAa,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,SAAS,CAAE;gCACnD,CAAC,CAAC,KAAK;oCACL,CAAC,CAAC,2BAA2B;wCAC3B,CAAC,cAAc,CAAC,MAAM,CAAC,IAAI,OAAO,CAAC;oCACrC,CAAC,CAAC,CAAC,SAAS,IAAI,CAAC,KAAK;wCACpB,CAAC,CAAC,sCAAsC;4CACtC,KAAK,CAAC,OAAO,CAAC,I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package/dist/components/msa/renderMSAMouseover.js

@@ -6,52 +6,29 @@ const highlightColor = 'rgba(128,128,0,0.2)';
 // faint hover-style wash alone is invisible against clustalx coloring)
 const highlightColumnsFill = 'rgba(255,140,0,0.28)';
 const highlightColumnsBorder = 'rgba(210,90,0,0.95)';
-// Collapse sorted column indices into contiguous [start,end] runs so a run of
-// highlighted columns draws as one bordered band rather than per-column slices
-// (which would draw internal borders).
-function contiguousRuns(columns) {
-    const sorted = [...columns].sort((a, b) => a - b);
-    const runs = [];
-    for (const col of sorted) {
-        const last = runs.at(-1);
-        if (last && col === last.end + 1) {
-            last.end = col;
-        }
-        else {
-            runs.push({ start: col, end: col });
-        }
-    }
-    return runs;
-}
 export function renderMouseover({ ctx, model, }) {
-    const { mouseCol, colWidth, msaAreaWidth, verticalScrollbarWidth, height, rowHeight, scrollX, scrollY, mouseRow, mouseClickRow, mouseClickCol, relativeTo, hoveredTreeNode, highlightedColumns, highResScaleFactor, } = model;
+    const { mouseCol, colWidth, msaAreaWidth, verticalScrollbarWidth, height, rowHeight, scrollX, scrollY, mouseRow, mouseClickRow, mouseClickCol, highResScaleFactor, referenceRowIndex, hoveredRowIndices, highlightedColumnRuns, } = model;
     const width = msaAreaWidth - verticalScrollbarWidth;
     ctx.resetTransform();
     ctx.clearRect(0, 0, width * highResScaleFactor, height * highResScaleFactor);
     ctx.scale(highResScaleFactor, highResScaleFactor);
     // Highlight reference row (relativeTo) persistently
-    if (relativeTo) {
-        const referenceRowIndex = model.rowNamesSet.get(relativeTo);
-        if (referenceRowIndex !== undefined) {
-            ctx.fillStyle = referenceColor;
-            ctx.fillRect(0, referenceRowIndex * rowHeight + scrollY, width, rowHeight);
-        }
+    if (referenceRowIndex !== undefined) {
+        ctx.fillStyle = referenceColor;
+        ctx.fillRect(0, referenceRowIndex * rowHeight + scrollY, width, rowHeight);
     }
     // Highlight multiple rows when hovering over tree nodes with children
-    if (hoveredTreeNode) {
+    if (hoveredRowIndices.length > 0) {
         ctx.fillStyle = multiRowHoverColor;
-        for (const descendantName of hoveredTreeNode.descendantNames) {
-            const rowIndex = model.rowNamesSet.get(descendantName);
-            if (rowIndex !== undefined) {
-                ctx.fillRect(0, rowIndex * rowHeight + scrollY, width, rowHeight);
-            }
+        for (const rowIndex of hoveredRowIndices) {
+            ctx.fillRect(0, rowIndex * rowHeight + scrollY, width, rowHeight);
         }
     }
     // Highlight multiple columns — draw each contiguous run as a filled, bordered
     // band so a domain/motif highlight is clearly visible over the alignment
-    if (highlightedColumns?.length) {
+    if (highlightedColumnRuns.length > 0) {
         ctx.lineWidth = 2;
-        for (const { start, end } of contiguousRuns(highlightedColumns)) {
+        for (const { start, end } of highlightedColumnRuns) {
             const x = start * colWidth + scrollX;
             const w = (end - start + 1) * colWidth;
             ctx.fillStyle = highlightColumnsFill;

package/dist/components/msa/renderMSAMouseover.js.map

@@ -1 +1 @@
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package/dist/components/msa/useMsaBlockMouse.d.ts

@@ -0,0 +1,23 @@
+import type React from 'react';
+import type { MsaViewModel } from '../../model.ts';
+/**
+ * Translates pointer events over one MSA block into model column/row hover and
+ * click state, and reports where a tooltip should be anchored.
+ *
+ * The anchor is only tracked when there is something to show (an insertion, a
+ * domain under the cursor, or column stats), so plain mouse movement over the
+ * alignment updates the canvas overlay without re-rendering this component.
+ */
+export declare function useMsaBlockMouse({ model, offsetX, offsetY, }: {
+    model: MsaViewModel;
+    offsetX: number;
+    offsetY: number;
+}): {
+    tooltipPoint: {
+        x: number;
+        y: number;
+    } | undefined;
+    onMouseMove: (event: React.MouseEvent, el: HTMLElement) => void;
+    onClick: (event: React.MouseEvent, el: HTMLElement) => void;
+    onMouseLeave: () => void;
+};

package/dist/components/msa/useMsaBlockMouse.js

@@ -0,0 +1,45 @@
+import { useState } from 'react';
+function eventToColRow({ event, el, offsetX, offsetY, colWidth, rowHeight, }) {
+    const { left, top } = el.getBoundingClientRect();
+    return {
+        col: Math.floor((event.clientX - left + offsetX) / colWidth),
+        row: Math.floor((event.clientY - top + offsetY) / rowHeight),
+    };
+}
+/**
+ * Translates pointer events over one MSA block into model column/row hover and
+ * click state, and reports where a tooltip should be anchored.
+ *
+ * The anchor is only tracked when there is something to show (an insertion, a
+ * domain under the cursor, or column stats), so plain mouse movement over the
+ * alignment updates the canvas overlay without re-rendering this component.
+ */
+export function useMsaBlockMouse({ model, offsetX, offsetY, }) {
+    const [tooltipPoint, setTooltipPoint] = useState();
+    function colRow(event, el) {
+        const { colWidth, rowHeight } = model;
+        return eventToColRow({ event, el, offsetX, offsetY, colWidth, rowHeight });
+    }
+    function onMouseMove(event, el) {
+        const { col, row } = colRow(event, el);
+        const inBounds = col >= 0 && col < model.numColumns && row >= 0 && row < model.numRows;
+        model.setMousePos(inBounds ? col : undefined, inBounds ? row : undefined);
+        const hasTooltip = !!model.hoveredInsertion ||
+            model.mouseOverDomains.length > 0 ||
+            (model.showColumnStats && !!model.mouseOverColumnStats);
+        setTooltipPoint(hasTooltip ? { x: event.clientX, y: event.clientY } : undefined);
+    }
+    function onClick(event, el) {
+        const { col, row } = colRow(event, el);
+        const { mouseClickCol, mouseClickRow } = model;
+        // clicking the same cell again clears the pinned crosshair
+        const same = col === mouseClickCol && row === mouseClickRow;
+        model.setMouseClickPos(same ? undefined : col, same ? undefined : row);
+    }
+    function onMouseLeave() {
+        model.setMousePos();
+        setTooltipPoint(undefined);
+    }
+    return { tooltipPoint, onMouseMove, onClick, onMouseLeave };
+}
+//# sourceMappingURL=useMsaBlockMouse.js.map

package/dist/components/msa/useMsaBlockMouse.js.map

@@ -0,0 +1 @@
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package/dist/components/tree/TreeCanvas.js

@@ -15,31 +15,26 @@ const TreeCanvas = observer(function ({ model }) {
     const { onMouseDown, onMouseUp } = useWheelScroll({ ref, onScrollY });
     const mouseoverRef = useCanvasAutorun(ctx => {
         if (isAlive(model)) {
-            const { relativeTo, leaves, rowHeight, hoveredTreeNode, treeAreaWidth: w, height: h, scrollY: sy, mouseOverRowName, } = model;
+            const { rowHeight, treeAreaWidth: w, height: h, scrollY: sy, mouseRow, referenceRowIndex, hoveredRowIndices, } = model;
             ctx.resetTransform();
             ctx.clearRect(0, 0, w, h);
-            const leafByName = new Map(leaves.map(leaf => [leaf.data.name, leaf]));
-            const fillRow = (name) => {
-                const leaf = leafByName.get(name);
-                if (leaf) {
-                    ctx.fillRect(0, leaf.x + sy - rowHeight / 2, w, rowHeight);
-                }
+            // rows are laid out at a fixed pitch, so a row index is all that is
+            // needed to place its band (leaf.x is rowHeight*(index+0.5))
+            const fillRow = (index) => {
+                ctx.fillRect(0, index * rowHeight + sy, w, rowHeight);
             };
-            if (relativeTo) {
+            if (referenceRowIndex !== undefined) {
                 ctx.fillStyle = referenceColor;
-                fillRow(relativeTo);
+                fillRow(referenceRowIndex);
             }
-            if (hoveredTreeNode) {
-                ctx.fillStyle = treeHoverColor;
-                for (const descendantName of hoveredTreeNode.descendantNames) {
-                    fillRow(descendantName);
-                }
+            ctx.fillStyle = treeHoverColor;
+            for (const index of hoveredRowIndices) {
+                fillRow(index);
             }
-            if (mouseOverRowName &&
-                mouseOverRowName !== relativeTo &&
-                !hoveredTreeNode?.descendantNames.includes(mouseOverRowName)) {
-                ctx.fillStyle = treeHoverColor;
-                fillRow(mouseOverRowName);
+            if (mouseRow !== undefined &&
+                mouseRow !== referenceRowIndex &&
+                !hoveredRowIndices.includes(mouseRow)) {
+                fillRow(mouseRow);
             }
         }
     }, [model]);

package/dist/components/tree/TreeCanvas.js.map

@@ -1 +1 @@
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