react-msaview 5.5.0 → 5.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (139) hide show
  1. package/bundle/index.js +173 -162
  2. package/bundle/index.js.map +4 -4
  3. package/dist/components/ConservationTrack.js +20 -26
  4. package/dist/components/ConservationTrack.js.map +1 -1
  5. package/dist/components/MSAViewer.d.ts +7 -1
  6. package/dist/components/MSAViewer.js +4 -1
  7. package/dist/components/MSAViewer.js.map +1 -1
  8. package/dist/components/SequenceTextArea.js +1 -1
  9. package/dist/components/SequenceTextArea.js.map +1 -1
  10. package/dist/components/TextTrack.js +20 -27
  11. package/dist/components/TextTrack.js.map +1 -1
  12. package/dist/components/Track.js +1 -1
  13. package/dist/components/Track.js.map +1 -1
  14. package/dist/components/dialogs/TrackInfoDialog.js +1 -1
  15. package/dist/components/dialogs/TrackInfoDialog.js.map +1 -1
  16. package/dist/components/header/ColorSchemeMenu.js +1 -1
  17. package/dist/components/header/ColorSchemeMenu.js.map +1 -1
  18. package/dist/components/header/FileMenu.js +1 -16
  19. package/dist/components/header/FileMenu.js.map +1 -1
  20. package/dist/components/header/Header.js +6 -5
  21. package/dist/components/header/Header.js.map +1 -1
  22. package/dist/components/header/HeaderInfoArea.js +1 -1
  23. package/dist/components/header/HeaderInfoArea.js.map +1 -1
  24. package/dist/components/header/HeaderStatusArea.js +1 -1
  25. package/dist/components/header/HeaderStatusArea.js.map +1 -1
  26. package/dist/components/header/MSASettingsMenu.js +1 -1
  27. package/dist/components/header/MSASettingsMenu.js.map +1 -1
  28. package/dist/components/header/TreeSettingsMenu.js +1 -1
  29. package/dist/components/header/TreeSettingsMenu.js.map +1 -1
  30. package/dist/components/header/ZoomControls.js +14 -12
  31. package/dist/components/header/ZoomControls.js.map +1 -1
  32. package/dist/components/header/ZoomMenu.js +1 -10
  33. package/dist/components/header/ZoomMenu.js.map +1 -1
  34. package/dist/components/header/settingsMenuItems.js +9 -1
  35. package/dist/components/header/settingsMenuItems.js.map +1 -1
  36. package/dist/components/{header/HeaderMenu.d.ts → msa/ColumnStats.d.ts} +3 -3
  37. package/dist/components/msa/ColumnStats.js +42 -0
  38. package/dist/components/msa/ColumnStats.js.map +1 -0
  39. package/dist/components/msa/DomainLegend.js +1 -1
  40. package/dist/components/msa/DomainLegend.js.map +1 -1
  41. package/dist/components/msa/MSACanvasBlock.js +39 -39
  42. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  43. package/dist/components/msa/MSAMouseoverCanvas.js +6 -12
  44. package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
  45. package/dist/components/msa/renderBoxFeatureCanvasBlock.js +3 -1
  46. package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -1
  47. package/dist/components/msa/renderMSAMouseover.js +1 -2
  48. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  49. package/dist/components/overlayColors.d.ts +3 -0
  50. package/dist/components/overlayColors.js +11 -0
  51. package/dist/components/overlayColors.js.map +1 -0
  52. package/dist/components/tracks/renderTracksSvg.d.ts +6 -3
  53. package/dist/components/tracks/renderTracksSvg.js +17 -8
  54. package/dist/components/tracks/renderTracksSvg.js.map +1 -1
  55. package/dist/components/tree/TreeCanvas.js +31 -38
  56. package/dist/components/tree/TreeCanvas.js.map +1 -1
  57. package/dist/components/tree/TreeCanvasBlock.js +12 -47
  58. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  59. package/dist/components/tree/clickMap.d.ts +24 -0
  60. package/dist/components/tree/clickMap.js +33 -0
  61. package/dist/components/tree/clickMap.js.map +1 -0
  62. package/dist/components/tree/renderTreeCanvas.d.ts +1 -21
  63. package/dist/components/tree/renderTreeCanvas.js +8 -7
  64. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  65. package/dist/constants.d.ts +1 -0
  66. package/dist/constants.js +1 -0
  67. package/dist/constants.js.map +1 -1
  68. package/dist/fetchUtils.d.ts +2 -1
  69. package/dist/fetchUtils.js +3 -2
  70. package/dist/fetchUtils.js.map +1 -1
  71. package/dist/index.d.ts +1 -1
  72. package/dist/model/msaModel.d.ts +25 -2
  73. package/dist/model/msaModel.js +15 -3
  74. package/dist/model/msaModel.js.map +1 -1
  75. package/dist/model/treeModel.d.ts +46 -5
  76. package/dist/model/treeModel.js +20 -7
  77. package/dist/model/treeModel.js.map +1 -1
  78. package/dist/model.d.ts +545 -132
  79. package/dist/model.js +101 -75
  80. package/dist/model.js.map +1 -1
  81. package/dist/propertyConservation.d.ts +7 -0
  82. package/dist/propertyConservation.js +66 -0
  83. package/dist/propertyConservation.js.map +1 -0
  84. package/dist/types.d.ts +4 -1
  85. package/dist/useCanvasAutorun.d.ts +2 -0
  86. package/dist/useCanvasAutorun.js +23 -0
  87. package/dist/useCanvasAutorun.js.map +1 -0
  88. package/dist/version.d.ts +1 -1
  89. package/dist/version.js +1 -1
  90. package/package.json +4 -6
  91. package/src/colorSchemes.docs.test.ts +55 -0
  92. package/src/columnStats.test.ts +94 -0
  93. package/src/components/ConservationTrack.tsx +17 -15
  94. package/src/components/MSAViewer.tsx +12 -0
  95. package/src/components/SequenceTextArea.tsx +1 -1
  96. package/src/components/TextTrack.tsx +7 -11
  97. package/src/components/Track.tsx +1 -1
  98. package/src/components/dialogs/TrackInfoDialog.tsx +1 -1
  99. package/src/components/header/ColorSchemeMenu.tsx +1 -0
  100. package/src/components/header/FileMenu.tsx +1 -15
  101. package/src/components/header/Header.tsx +11 -8
  102. package/src/components/header/HeaderInfoArea.tsx +1 -1
  103. package/src/components/header/HeaderStatusArea.tsx +1 -1
  104. package/src/components/header/MSASettingsMenu.tsx +1 -0
  105. package/src/components/header/TreeSettingsMenu.tsx +1 -0
  106. package/src/components/header/ZoomControls.tsx +24 -17
  107. package/src/components/header/ZoomMenu.tsx +1 -10
  108. package/src/components/header/settingsMenuItems.ts +9 -1
  109. package/src/components/msa/ColumnStats.tsx +54 -0
  110. package/src/components/msa/DomainLegend.tsx +5 -1
  111. package/src/components/msa/MSACanvasBlock.tsx +29 -26
  112. package/src/components/msa/MSAMouseoverCanvas.tsx +10 -13
  113. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +3 -1
  114. package/src/components/msa/renderMSAMouseover.ts +2 -2
  115. package/src/components/overlayColors.ts +12 -0
  116. package/src/components/tracks/renderTracksSvg.ts +22 -8
  117. package/src/components/tree/TreeCanvas.tsx +47 -54
  118. package/src/components/tree/TreeCanvasBlock.tsx +10 -68
  119. package/src/components/tree/clickMap.ts +55 -0
  120. package/src/components/tree/renderTreeCanvas.ts +10 -34
  121. package/src/constants.ts +1 -0
  122. package/src/fetchUtils.ts +6 -3
  123. package/src/index.ts +1 -1
  124. package/src/model/msaModel.ts +21 -3
  125. package/src/model/treeModel.ts +21 -7
  126. package/src/model.ts +116 -117
  127. package/src/propertyConservation.test.ts +47 -0
  128. package/src/propertyConservation.ts +73 -0
  129. package/src/stripDefaultSnapshot.test.ts +54 -0
  130. package/src/types.ts +7 -1
  131. package/src/useCanvasAutorun.ts +28 -0
  132. package/src/version.ts +1 -1
  133. package/dist/components/dialogs/SettingsDialog.d.ts +0 -7
  134. package/dist/components/dialogs/SettingsDialog.js +0 -100
  135. package/dist/components/dialogs/SettingsDialog.js.map +0 -1
  136. package/dist/components/header/HeaderMenu.js +0 -27
  137. package/dist/components/header/HeaderMenu.js.map +0 -1
  138. package/src/components/dialogs/SettingsDialog.tsx +0 -234
  139. package/src/components/header/HeaderMenu.tsx +0 -38

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