react-msaview 5.10.0 → 6.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (148) hide show
  1. package/bundle/index.js +99 -99
  2. package/bundle/index.js.map +4 -4
  3. package/dist/clustalX.js +22 -22
  4. package/dist/clustalX.js.map +1 -1
  5. package/dist/components/CopyButton.d.ts +9 -0
  6. package/dist/components/CopyButton.js +23 -0
  7. package/dist/components/CopyButton.js.map +1 -0
  8. package/dist/components/Loading.js +2 -2
  9. package/dist/components/Loading.js.map +1 -1
  10. package/dist/components/MSAView.js +2 -2
  11. package/dist/components/MSAView.js.map +1 -1
  12. package/dist/components/ResizeHandles.js +24 -40
  13. package/dist/components/ResizeHandles.js.map +1 -1
  14. package/dist/components/ScrollbarThumb.d.ts +14 -0
  15. package/dist/components/ScrollbarThumb.js +28 -0
  16. package/dist/components/ScrollbarThumb.js.map +1 -0
  17. package/dist/components/SequenceTextArea.js +3 -10
  18. package/dist/components/SequenceTextArea.js.map +1 -1
  19. package/dist/components/VerticalScrollbar.js +11 -25
  20. package/dist/components/VerticalScrollbar.js.map +1 -1
  21. package/dist/components/dialogs/FeatureDialog.js +3 -3
  22. package/dist/components/dialogs/FeatureDialog.js.map +1 -1
  23. package/dist/components/dialogs/{UserProvidedDomainsDialog.d.ts → InterProScanFileDialog.d.ts} +2 -2
  24. package/dist/components/dialogs/{UserProvidedDomainsDialog.js → InterProScanFileDialog.js} +6 -10
  25. package/dist/components/dialogs/InterProScanFileDialog.js.map +1 -0
  26. package/dist/components/dialogs/TrackInfoDialog.d.ts +2 -4
  27. package/dist/components/dialogs/TrackInfoDialog.js +8 -14
  28. package/dist/components/dialogs/TrackInfoDialog.js.map +1 -1
  29. package/dist/components/header/FileMenu.js +3 -3
  30. package/dist/components/header/FileMenu.js.map +1 -1
  31. package/dist/components/header/GappynessSlider.js +1 -1
  32. package/dist/components/header/GappynessSlider.js.map +1 -1
  33. package/dist/components/header/{getDomainsMenu.d.ts → getAnnotationsMenu.d.ts} +1 -1
  34. package/dist/components/header/{getDomainsMenu.js → getAnnotationsMenu.js} +10 -9
  35. package/dist/components/header/getAnnotationsMenu.js.map +1 -0
  36. package/dist/components/import/ImportForm.js +1 -1
  37. package/dist/components/import/ImportForm.js.map +1 -1
  38. package/dist/components/import/ImportFormExamples.js +66 -57
  39. package/dist/components/import/ImportFormExamples.js.map +1 -1
  40. package/dist/components/minimap/Minimap.js +11 -22
  41. package/dist/components/minimap/Minimap.js.map +1 -1
  42. package/dist/components/minimap/MinimapSVG.d.ts +2 -1
  43. package/dist/components/minimap/MinimapSVG.js +3 -4
  44. package/dist/components/minimap/MinimapSVG.js.map +1 -1
  45. package/dist/components/minimap/minimapLayout.d.ts +10 -1
  46. package/dist/components/minimap/minimapLayout.js +15 -10
  47. package/dist/components/minimap/minimapLayout.js.map +1 -1
  48. package/dist/components/msa/{DomainLegend.d.ts → AnnotationLegend.d.ts} +2 -2
  49. package/dist/components/msa/{DomainLegend.js → AnnotationLegend.js} +4 -4
  50. package/dist/components/msa/AnnotationLegend.js.map +1 -0
  51. package/dist/components/msa/MSACanvas.js +2 -2
  52. package/dist/components/msa/MSACanvas.js.map +1 -1
  53. package/dist/components/msa/MSAMouseoverCanvas.js +1 -2
  54. package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
  55. package/dist/components/msa/MSAPanel.js +2 -2
  56. package/dist/components/msa/MSAPanel.js.map +1 -1
  57. package/dist/components/msa/domainBandCursor.d.ts +17 -0
  58. package/dist/components/msa/domainBandCursor.js +39 -0
  59. package/dist/components/msa/domainBandCursor.js.map +1 -0
  60. package/dist/components/msa/renderMSABlock.js +14 -20
  61. package/dist/components/msa/renderMSABlock.js.map +1 -1
  62. package/dist/components/msa/renderMSAMouseover.js +1 -2
  63. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  64. package/dist/components/tree/TreeRuler.js +5 -2
  65. package/dist/components/tree/TreeRuler.js.map +1 -1
  66. package/dist/ggplotPalettes.d.ts +0 -1
  67. package/dist/ggplotPalettes.js +0 -3
  68. package/dist/ggplotPalettes.js.map +1 -1
  69. package/dist/hierarchy.d.ts +2 -6
  70. package/dist/hierarchy.js +4 -6
  71. package/dist/hierarchy.js.map +1 -1
  72. package/dist/index.d.ts +2 -2
  73. package/dist/launchInterProScan.d.ts +0 -23
  74. package/dist/launchInterProScan.js +2 -5
  75. package/dist/launchInterProScan.js.map +1 -1
  76. package/dist/measureTextCanvas.js +21 -6
  77. package/dist/measureTextCanvas.js.map +1 -1
  78. package/dist/model.d.ts +50 -100
  79. package/dist/model.js +128 -107
  80. package/dist/model.js.map +1 -1
  81. package/dist/renderToSvg.js +2 -2
  82. package/dist/renderToSvg.js.map +1 -1
  83. package/dist/rowCoordinateCalculations.d.ts +13 -17
  84. package/dist/rowCoordinateCalculations.js +45 -39
  85. package/dist/rowCoordinateCalculations.js.map +1 -1
  86. package/dist/types.d.ts +4 -11
  87. package/dist/version.d.ts +1 -1
  88. package/dist/version.js +1 -1
  89. package/dist/version.js.map +1 -1
  90. package/package.json +5 -5
  91. package/src/clustalX.ts +22 -22
  92. package/src/colSpace.test.ts +27 -0
  93. package/src/components/CopyButton.tsx +44 -0
  94. package/src/components/Loading.tsx +10 -1
  95. package/src/components/MSAView.tsx +2 -3
  96. package/src/components/ResizeHandles.tsx +60 -69
  97. package/src/components/ScrollbarThumb.tsx +48 -0
  98. package/src/components/SequenceTextArea.tsx +3 -16
  99. package/src/components/VerticalScrollbar.tsx +19 -33
  100. package/src/components/dialogs/FeatureDialog.tsx +3 -4
  101. package/src/components/dialogs/{UserProvidedDomainsDialog.tsx → InterProScanFileDialog.tsx} +6 -14
  102. package/src/components/dialogs/TrackInfoDialog.tsx +18 -20
  103. package/src/components/header/FileMenu.tsx +3 -3
  104. package/src/components/header/GappynessSlider.tsx +4 -1
  105. package/src/components/header/{getDomainsMenu.ts → getAnnotationsMenu.ts} +10 -9
  106. package/src/components/import/ImportForm.tsx +1 -1
  107. package/src/components/import/ImportFormExamples.tsx +82 -133
  108. package/src/components/minimap/Minimap.tsx +23 -31
  109. package/src/components/minimap/MinimapSVG.tsx +32 -31
  110. package/src/components/minimap/minimapLayout.test.ts +60 -0
  111. package/src/components/minimap/minimapLayout.ts +15 -10
  112. package/src/components/msa/{DomainLegend.tsx → AnnotationLegend.tsx} +7 -3
  113. package/src/components/msa/MSACanvas.tsx +3 -10
  114. package/src/components/msa/MSAMouseoverCanvas.tsx +1 -3
  115. package/src/components/msa/MSAPanel.tsx +2 -2
  116. package/src/components/msa/domainBandCursor.ts +41 -0
  117. package/src/components/msa/renderMSABlock.ts +19 -23
  118. package/src/components/msa/renderMSAMouseover.ts +1 -3
  119. package/src/components/tree/TreeRuler.tsx +7 -2
  120. package/src/components/tree/renderTreeCanvas.test.ts +15 -7
  121. package/src/domainBands.test.ts +24 -0
  122. package/src/domainLetterColor.test.ts +80 -0
  123. package/src/ggplotPalettes.ts +0 -4
  124. package/src/hierarchy.test.ts +7 -7
  125. package/src/hierarchy.ts +6 -9
  126. package/src/index.ts +4 -1
  127. package/src/largeTree.test.ts +23 -2
  128. package/src/launchInterProScan.ts +3 -30
  129. package/src/loadErrorDisplay.test.tsx +102 -0
  130. package/src/measureTextCanvas.ts +22 -6
  131. package/src/model.ts +137 -115
  132. package/src/renderMinimapSvg.test.tsx +109 -0
  133. package/src/renderToSvg.tsx +2 -2
  134. package/src/rowCoordinateCalculations.ts +48 -44
  135. package/src/types.ts +10 -15
  136. package/src/version.ts +1 -1
  137. package/src/viewChrome.test.tsx +134 -0
  138. package/dist/components/dialogs/DomainDialog.d.ts +0 -6
  139. package/dist/components/dialogs/DomainDialog.js +0 -19
  140. package/dist/components/dialogs/DomainDialog.js.map +0 -1
  141. package/dist/components/dialogs/UserProvidedDomainsDialog.js.map +0 -1
  142. package/dist/components/header/SettingsMenu.d.ts +0 -6
  143. package/dist/components/header/SettingsMenu.js +0 -40
  144. package/dist/components/header/SettingsMenu.js.map +0 -1
  145. package/dist/components/header/getDomainsMenu.js.map +0 -1
  146. package/dist/components/msa/DomainLegend.js.map +0 -1
  147. package/src/components/dialogs/DomainDialog.tsx +0 -45
  148. package/src/components/header/SettingsMenu.tsx +0 -57
package/dist/model.js.map CHANGED
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package/dist/renderToSvg.js CHANGED
@@ -72,13 +72,13 @@ function MsaSvg({ model, theme, Context, layout, }) {
72
72
  React.createElement("rect", { width: "100%", height: "100%", fill: "white" }),
73
73
  includeMinimap ? (React.createElement(React.Fragment, null,
74
74
  React.createElement("g", { transform: `translate(${treeAreaWidth} 0)` },
75
- React.createElement(MinimapSVG, { model: model })),
75
+ React.createElement(MinimapSVG, { model: model, width: width - treeAreaWidth })),
76
76
  React.createElement("g", { transform: `translate(0 ${minimapHeight})` }, body))) : (body),
77
77
  legendWidth > 0 ? (React.createElement("g", { transform: `translate(${width} ${legendTop})` },
78
78
  React.createElement(LegendSVG, { model: model, width: legendWidth }))) : null));
79
79
  }
80
80
  // the domain color key drawn as a reserved column to the right of the
81
- // alignment, mirroring the on-screen DomainLegend overlay
81
+ // alignment, mirroring the on-screen AnnotationLegend overlay
82
82
  function LegendSVG({ model, width }) {
83
83
  const { visibleDomainTypes, fillPalette, strokePalette } = model;
84
84
  const boxHeight = LEGEND_PAD * 2 + visibleDomainTypes.length * LEGEND_ROW_H;
package/dist/renderToSvg.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/rowCoordinateCalculations.d.ts CHANGED
@@ -1,20 +1,3 @@
1
- /**
2
- * MSA Coordinate Systems:
3
- *
4
- * 1. **Global Column (globalCol)**: The column index in the full, unfiltered MSA.
5
- * Range: 0 to (MSA width - 1)
6
- * This is the "true" column position before any gap-hiding is applied.
7
- *
8
- * 2. **Visible Column (visibleCol)**: The column index after hiding gappy columns.
9
- * Range: 0 to (numColumns - 1) where numColumns = MSA width - blanks.length
10
- * This is what the user sees on screen when "Hide columns w/ N% gaps" is enabled.
11
- * When gap hiding is disabled, visibleCol === globalCol.
12
- *
13
- * 3. **Sequence Position (seqPos)**: The position within a specific row's ungapped sequence.
14
- * Range: 0 to (ungapped sequence length - 1)
15
- * This counts only non-gap characters ('-' and '.' are gaps).
16
- * Each row can have different seqPos values for the same globalCol due to gaps.
17
- */
18
1
  /**
19
2
  * Convert a visible column index to a global column index.
20
3
  * This is used when translating mouse/screen coordinates to MSA coordinates.
@@ -33,6 +16,19 @@ export declare function visibleColToGlobalCol(blanks: number[], visibleCol: numb
33
16
  * @returns The visible column index, or undefined if the column is hidden
34
17
  */
35
18
  export declare function globalColToVisibleCol(blanks: number[], globalCol: number): number | undefined;
19
+ /**
20
+ * How many visible columns come before a global column. For a visible column
21
+ * that is its own visible index; for a hidden one it is the index of the next
22
+ * visible column, i.e. where the hidden column collapses to.
23
+ *
24
+ * That total answer is what spans want: resolving both ends of a span through
25
+ * globalColToVisibleCol instead loses the whole span whenever either end lands
26
+ * in a hidden column.
27
+ *
28
+ * @param blanks - Sorted array of global column indices that are hidden
29
+ * @param globalCol - The global column index in the full MSA
30
+ */
31
+ export declare function visibleColsBefore(blanks: number[], globalCol: number): number;
36
32
  /**
37
33
  * Convert a visible column to a row-specific sequence position.
38
34
  * Returns undefined if the position is a gap in the sequence.
package/dist/rowCoordinateCalculations.js CHANGED
@@ -16,6 +16,25 @@ import { isBlank } from './util.js';
16
16
  * This counts only non-gap characters ('-' and '.' are gaps).
17
17
  * Each row can have different seqPos values for the same globalCol due to gaps.
18
18
  */
19
+ /**
20
+ * Index of the first element in `[0, len)` for which `pred` holds, over a range
21
+ * where `pred` is false up to some point and true from there on. Both
22
+ * conversions below are that shape, since `blanks` is sorted ascending.
23
+ */
24
+ function partitionPoint(len, pred) {
25
+ let left = 0;
26
+ let right = len;
27
+ while (left < right) {
28
+ const mid = (left + right) >>> 1;
29
+ if (pred(mid)) {
30
+ right = mid;
31
+ }
32
+ else {
33
+ left = mid + 1;
34
+ }
35
+ }
36
+ return left;
37
+ }
19
38
  /**
20
39
  * Convert a visible column index to a global column index.
21
40
  * This is used when translating mouse/screen coordinates to MSA coordinates.
@@ -25,26 +44,10 @@ import { isBlank } from './util.js';
25
44
  * @returns The corresponding global column index in the full MSA
26
45
  */
27
46
  export function visibleColToGlobalCol(blanks, visibleCol) {
28
- let currentVisibleCol = 0;
29
- let blankArrayIndex = 0;
30
- let globalCol = 0;
31
- const blanksLen = blanks.length;
32
- // Skip any leading blank columns (blanks at the very beginning)
33
- while (blankArrayIndex < blanksLen && blanks[blankArrayIndex] === globalCol) {
34
- blankArrayIndex++;
35
- globalCol++;
36
- }
37
- while (currentVisibleCol < visibleCol) {
38
- currentVisibleCol++;
39
- globalCol++;
40
- // Skip any blank columns after incrementing
41
- while (blankArrayIndex < blanksLen &&
42
- blanks[blankArrayIndex] === globalCol) {
43
- blankArrayIndex++;
44
- globalCol++;
45
- }
46
- }
47
- return globalCol;
47
+ // `blanks[i] - i` counts the visible columns before the i-th blank, so the
48
+ // first blank with more than visibleCol of them in front of it is the first
49
+ // one sitting past this column. Its index is how many blanks shift it right.
50
+ return (visibleCol + partitionPoint(blanks.length, i => blanks[i] - i > visibleCol));
48
51
  }
49
52
  /**
50
53
  * Convert a global column index to a visible column index.
@@ -55,25 +58,28 @@ export function visibleColToGlobalCol(blanks, visibleCol) {
55
58
  * @returns The visible column index, or undefined if the column is hidden
56
59
  */
57
60
  export function globalColToVisibleCol(blanks, globalCol) {
58
- // Check if this column is hidden
59
- // Use binary search since blanks is sorted
60
- let left = 0;
61
- let right = blanks.length - 1;
62
- while (left <= right) {
63
- const mid = Math.floor((left + right) / 2);
64
- if (blanks[mid] === globalCol) {
65
- return undefined; // Column is hidden
66
- }
67
- if (blanks[mid] < globalCol) {
68
- left = mid + 1;
69
- }
70
- else {
71
- right = mid - 1;
72
- }
73
- }
74
- // Count blanks before this column (left is now the insertion point)
75
- const blanksBefore = left;
76
- return globalCol - blanksBefore;
61
+ const blanksBefore = countBlanksBefore(blanks, globalCol);
62
+ return blanks[blanksBefore] === globalCol
63
+ ? undefined // Column is hidden
64
+ : globalCol - blanksBefore;
65
+ }
66
+ function countBlanksBefore(blanks, globalCol) {
67
+ return partitionPoint(blanks.length, i => blanks[i] >= globalCol);
68
+ }
69
+ /**
70
+ * How many visible columns come before a global column. For a visible column
71
+ * that is its own visible index; for a hidden one it is the index of the next
72
+ * visible column, i.e. where the hidden column collapses to.
73
+ *
74
+ * That total answer is what spans want: resolving both ends of a span through
75
+ * globalColToVisibleCol instead loses the whole span whenever either end lands
76
+ * in a hidden column.
77
+ *
78
+ * @param blanks - Sorted array of global column indices that are hidden
79
+ * @param globalCol - The global column index in the full MSA
80
+ */
81
+ export function visibleColsBefore(blanks, globalCol) {
82
+ return globalCol - countBlanksBefore(blanks, globalCol);
77
83
  }
78
84
  /**
79
85
  * Convert a visible column to a row-specific sequence position.
package/dist/rowCoordinateCalculations.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/types.d.ts CHANGED
@@ -1,3 +1,4 @@
1
+ import type { Annotation } from 'msa-parsers';
1
2
  export interface Accession {
2
3
  accession: string;
3
4
  name: string;
@@ -20,18 +21,10 @@ export interface BasicTrack {
20
21
  ReactComponent: React.FC<any>;
21
22
  model: TextTrackModel & BarTrackModel;
22
23
  }
23
- export interface TidyDomainAnnotation {
24
- id: string;
25
- name: string;
26
- accession: string;
27
- description: string;
28
- featureType?: string;
29
- start: number;
30
- end: number;
31
- strand?: number;
32
- }
24
+ export type { Annotation };
25
+ export type TidyDomainAnnotation = Annotation;
33
26
  export interface DomainBand {
34
- annotation: TidyDomainAnnotation;
27
+ annotation: Annotation;
35
28
  startCol: number;
36
29
  endCol: number;
37
30
  stackIndex: number;
package/dist/version.d.ts CHANGED
@@ -1 +1 @@
1
- export declare const version = "5.10.0";
1
+ export declare const version = "6.0.0";
package/dist/version.js CHANGED
@@ -1,2 +1,2 @@
1
- export const version = '5.10.0';
1
+ export const version = '6.0.0';
2
2
  //# sourceMappingURL=version.js.map
package/dist/version.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"version.js","sourceRoot":"","sources":["../src/version.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,OAAO,GAAG,QAAQ,CAAA"}
1
+ {"version":3,"file":"version.js","sourceRoot":"","sources":["../src/version.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,OAAO,GAAG,OAAO,CAAA"}
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "react-msaview",
3
3
  "author": "Colin",
4
- "version": "5.10.0",
4
+ "version": "6.0.0",
5
5
  "license": "MIT",
6
6
  "type": "module",
7
7
  "repository": {
@@ -43,8 +43,8 @@
43
43
  "@gmod/newick": "^1.0.0",
44
44
  "colord": "^2.9.3",
45
45
  "flatbush": "^4.6.2",
46
- "@jbrowse/svgcanvas": "5.10.0",
47
- "msa-parsers": "5.10.0"
46
+ "@jbrowse/svgcanvas": "6.0.0",
47
+ "msa-parsers": "6.0.0"
48
48
  },
49
49
  "scripts": {
50
50
  "clean": "rimraf dist bundle",
@@ -53,8 +53,8 @@
53
53
  "build:esm": "tsc --project tsconfig.build.json",
54
54
  "build:umd": "node esbuild.mjs",
55
55
  "build": "pnpm clean && pnpm build:esm && pnpm build:umd",
56
- "statedocs": "rm -rf apidocs && mkdir apidocs && node --experimental-strip-types docgen/generateStateModelDocs.ts",
57
- "poststatedocs": "pnpm format",
56
+ "statedocs": "node --experimental-strip-types docgen/generateStateModelDocs.ts",
57
+ "poststatedocs": "oxfmt apidocs",
58
58
  "test": "vitest"
59
59
  },
60
60
  "main": "dist/index.js"
package/src/clustalX.ts CHANGED
@@ -20,34 +20,34 @@ const CYAN = 'rgb(26, 179, 179)'
20
20
  */
21
21
  export function clustalXColumnColors(counts: ColumnCounts, col: number) {
22
22
  const total = counts.total(col)
23
- const n = (letter: string) => counts.count(col, letter)
24
- const W = n('W')
25
- const L = n('L')
26
- const V = n('V')
27
- const I = n('I')
28
- const M = n('M')
29
- const A = n('A')
30
- const F = n('F')
31
- const C = n('C')
32
- const H = n('H')
33
- const P = n('P')
34
- const R = n('R')
35
- const K = n('K')
36
- const Q = n('Q')
37
- const E = n('E')
38
- const D = n('D')
39
- const T = n('T')
40
- const S = n('S')
41
- const G = n('G')
42
- const Y = n('Y')
43
- const N = n('N')
23
+ const count = (letter: string) => counts.count(col, letter)
24
+ const W = count('W')
25
+ const L = count('L')
26
+ const V = count('V')
27
+ const I = count('I')
28
+ const M = count('M')
29
+ const A = count('A')
30
+ const F = count('F')
31
+ const C = count('C')
32
+ const H = count('H')
33
+ const P = count('P')
34
+ const R = count('R')
35
+ const K = count('K')
36
+ const Q = count('Q')
37
+ const E = count('E')
38
+ const D = count('D')
39
+ const T = count('T')
40
+ const S = count('S')
41
+ const G = count('G')
42
+ const Y = count('Y')
43
+ const N = count('N')
44
44
 
45
45
  const hydrophobic = W + L + V + I + M + A + F + C + H + P + Y
46
46
  const KR = K + R
47
47
  const QE = Q + E
48
48
  const ED = E + D
49
49
  const TS = T + S
50
- const p = (n: number) => n / total
50
+ const p = (subtotal: number) => subtotal / total
51
51
 
52
52
  const colors: Record<string, string> = {}
53
53
 
package/src/colSpace.test.ts CHANGED
@@ -38,3 +38,30 @@ test('the last column agrees with the column statistics', () => {
38
38
  expect(model.mouseOverColumnStats?.col).toBe(9)
39
39
  expect(model.visibleColToRowLetter('b', 9)).toBe('C')
40
40
  })
41
+
42
+ // enough rows to force the vertical scrollbar, which eats into the width the
43
+ // alignment canvas actually gets
44
+ function makeTallModel() {
45
+ const names = Array.from({ length: 60 }, (_, i) => `seq${i}`)
46
+ const model = MSAModelF().create({
47
+ id: 'col-fit-test',
48
+ type: 'MsaView',
49
+ msaFormat: 'fasta',
50
+ height: 300,
51
+ data: { msa: names.map(n => `>${n}\n${'ACGT'.repeat(50)}`).join('\n') },
52
+ })
53
+ model.setWidth(800)
54
+ return model
55
+ }
56
+
57
+ test('fit horizontally leaves every column on screen', () => {
58
+ const model = makeTallModel()
59
+ expect(model.showVerticalScrollbar).toBe(true)
60
+
61
+ model.fitHorizontally()
62
+ // the canvas is the msa area minus the scrollbar; fitting to the msa area
63
+ // alone pushed the last columns past the right edge, with no minimap to
64
+ // show that anything was cut off
65
+ expect(model.totalWidth).toBeLessThanOrEqual(model.msaCanvasWidth)
66
+ expect(model.showHorizontalScrollbar).toBe(false)
67
+ })