react-msaview 5.0.7 → 5.0.16
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundle/index.js +135 -35
- package/bundle/index.js.LICENSE.txt +1 -1
- package/bundle/index.js.map +1 -1
- package/dist/components/Checkbox2.js +3 -6
- package/dist/components/Checkbox2.js.map +1 -1
- package/dist/components/MSAViewer.d.ts +14 -0
- package/dist/components/MSAViewer.js +34 -0
- package/dist/components/MSAViewer.js.map +1 -0
- package/dist/components/SequenceTextArea.js +4 -4
- package/dist/components/SequenceTextArea.js.map +1 -1
- package/dist/components/Track.js +5 -24
- package/dist/components/Track.js.map +1 -1
- package/dist/components/dialogs/DomainDialog.js +2 -5
- package/dist/components/dialogs/DomainDialog.js.map +1 -1
- package/dist/components/dialogs/InterProScanDialog.js +7 -7
- package/dist/components/dialogs/InterProScanDialog.js.map +1 -1
- package/dist/components/dialogs/SettingsDialog.js +3 -19
- package/dist/components/dialogs/SettingsDialog.js.map +1 -1
- package/dist/components/header/ColorSchemeMenu.d.ts +6 -0
- package/dist/components/header/ColorSchemeMenu.js +19 -0
- package/dist/components/header/ColorSchemeMenu.js.map +1 -0
- package/dist/components/header/{ZoomStar.d.ts → FileMenu.d.ts} +2 -2
- package/dist/components/header/FileMenu.js +71 -0
- package/dist/components/header/FileMenu.js.map +1 -0
- package/dist/components/header/Header.js +8 -6
- package/dist/components/header/Header.js.map +1 -1
- package/dist/components/header/HeaderMenu.js +3 -145
- package/dist/components/header/HeaderMenu.js.map +1 -1
- package/dist/components/header/MSASettingsMenu.d.ts +6 -0
- package/dist/components/header/MSASettingsMenu.js +36 -0
- package/dist/components/header/MSASettingsMenu.js.map +1 -0
- package/dist/components/header/SettingsMenu.js +1 -21
- package/dist/components/header/SettingsMenu.js.map +1 -1
- package/dist/components/header/TreeSettingsMenu.d.ts +6 -0
- package/dist/components/header/TreeSettingsMenu.js +74 -0
- package/dist/components/header/TreeSettingsMenu.js.map +1 -0
- package/dist/components/header/ZoomMenu.js +0 -8
- package/dist/components/header/ZoomMenu.js.map +1 -1
- package/dist/components/header/getDomainsMenu.d.ts +31 -0
- package/dist/components/header/getDomainsMenu.js +75 -0
- package/dist/components/header/getDomainsMenu.js.map +1 -0
- package/dist/components/import/ImportFormExamples.js +22 -20
- package/dist/components/import/ImportFormExamples.js.map +1 -1
- package/dist/components/msa/MSACanvas.js +13 -84
- package/dist/components/msa/MSACanvas.js.map +1 -1
- package/dist/components/msa/MSACanvasBlock.js +1 -3
- package/dist/components/msa/MSACanvasBlock.js.map +1 -1
- package/dist/components/msa/renderMSABlock.js +2 -4
- package/dist/components/msa/renderMSABlock.js.map +1 -1
- package/dist/components/msa/renderMSAMouseover.js +1 -7
- package/dist/components/msa/renderMSAMouseover.js.map +1 -1
- package/dist/components/tree/TreeCanvas.js +14 -91
- package/dist/components/tree/TreeCanvas.js.map +1 -1
- package/dist/components/tree/TreeNodeMenu.js +5 -16
- package/dist/components/tree/TreeNodeMenu.js.map +1 -1
- package/dist/components/tree/renderTreeCanvas.js +55 -22
- package/dist/components/tree/renderTreeCanvas.js.map +1 -1
- package/dist/constants.d.ts +0 -2
- package/dist/constants.js +0 -2
- package/dist/constants.js.map +1 -1
- package/dist/fetchUtils.d.ts +0 -1
- package/dist/fetchUtils.js +0 -4
- package/dist/fetchUtils.js.map +1 -1
- package/dist/flatToTree.d.ts +0 -5
- package/dist/flatToTree.js +13 -30
- package/dist/flatToTree.js.map +1 -1
- package/dist/hierarchy.d.ts +29 -0
- package/dist/hierarchy.js +164 -0
- package/dist/hierarchy.js.map +1 -0
- package/dist/index.d.ts +2 -0
- package/dist/index.js +1 -0
- package/dist/index.js.map +1 -1
- package/dist/launchInterProScan.d.ts +0 -5
- package/dist/launchInterProScan.js +5 -3
- package/dist/launchInterProScan.js.map +1 -1
- package/dist/model/DataModel.d.ts +9 -0
- package/dist/model/DataModel.js +12 -1
- package/dist/model/DataModel.js.map +1 -1
- package/dist/model/msaModel.d.ts +3 -0
- package/dist/model/msaModel.js +0 -1
- package/dist/model/msaModel.js.map +1 -1
- package/dist/model/treeModel.d.ts +3 -6
- package/dist/model/treeModel.js +3 -15
- package/dist/model/treeModel.js.map +1 -1
- package/dist/model.d.ts +24 -77
- package/dist/model.js +118 -239
- package/dist/model.js.map +1 -1
- package/dist/neighborJoining.js +38 -629
- package/dist/neighborJoining.js.map +1 -1
- package/dist/parseAsn1.d.ts +0 -12
- package/dist/parseAsn1.js +125 -332
- package/dist/parseAsn1.js.map +1 -1
- package/dist/useWheelScroll.d.ts +8 -0
- package/dist/useWheelScroll.js +93 -0
- package/dist/useWheelScroll.js.map +1 -0
- package/dist/util.d.ts +1 -6
- package/dist/util.js +5 -34
- package/dist/util.js.map +1 -1
- package/dist/vendor/copyToClipboard.d.ts +1 -10
- package/dist/vendor/copyToClipboard.js +14 -109
- package/dist/vendor/copyToClipboard.js.map +1 -1
- package/dist/vendor/fileSaver.d.ts +1 -11
- package/dist/vendor/fileSaver.js +7 -76
- package/dist/vendor/fileSaver.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/version.js.map +1 -1
- package/package.json +10 -13
- package/src/collapseLogic.test.ts +115 -0
- package/src/components/Checkbox2.tsx +9 -18
- package/src/components/MSAViewer.tsx +67 -0
- package/src/components/SequenceTextArea.tsx +4 -4
- package/src/components/Track.tsx +10 -26
- package/src/components/dialogs/DomainDialog.tsx +4 -5
- package/src/components/dialogs/InterProScanDialog.tsx +7 -7
- package/src/components/dialogs/SettingsDialog.tsx +0 -37
- package/src/components/header/ColorSchemeMenu.tsx +35 -0
- package/src/components/header/FileMenu.tsx +84 -0
- package/src/components/header/Header.tsx +8 -6
- package/src/components/header/HeaderMenu.tsx +4 -155
- package/src/components/header/MSASettingsMenu.tsx +48 -0
- package/src/components/header/SettingsMenu.tsx +0 -23
- package/src/components/header/TreeSettingsMenu.tsx +96 -0
- package/src/components/header/ZoomMenu.tsx +0 -8
- package/src/components/header/getDomainsMenu.ts +83 -0
- package/src/components/import/ImportFormExamples.tsx +38 -35
- package/src/components/msa/MSACanvas.tsx +21 -91
- package/src/components/msa/MSACanvasBlock.tsx +1 -3
- package/src/components/msa/renderBoxFeatureCanvasBlock.ts +1 -1
- package/src/components/msa/renderMSABlock.ts +2 -5
- package/src/components/msa/renderMSAMouseover.ts +0 -6
- package/src/components/tree/TreeCanvas.tsx +35 -100
- package/src/components/tree/TreeNodeMenu.tsx +5 -14
- package/src/components/tree/renderTreeCanvas.test.ts +205 -0
- package/src/components/tree/renderTreeCanvas.ts +64 -27
- package/src/constants.ts +0 -2
- package/src/fetchUtils.ts +0 -5
- package/src/flatToTree.ts +20 -38
- package/src/hierarchy.test.ts +120 -0
- package/src/hierarchy.ts +221 -0
- package/src/index.ts +2 -0
- package/src/launchInterProScan.ts +4 -3
- package/src/model/DataModel.ts +12 -1
- package/src/model/msaModel.ts +0 -2
- package/src/model/treeModel.ts +2 -18
- package/src/model.ts +180 -278
- package/src/neighborJoining.ts +38 -628
- package/src/parseAsn1.test.ts +4 -1
- package/src/parseAsn1.ts +135 -405
- package/src/useWheelScroll.ts +109 -0
- package/src/util.ts +5 -50
- package/src/vendor/copyToClipboard.ts +14 -122
- package/src/vendor/fileSaver.ts +8 -105
- package/src/version.ts +1 -1
- package/dist/components/dialogs/AddTrackDialog.d.ts +0 -8
- package/dist/components/dialogs/AddTrackDialog.js +0 -30
- package/dist/components/dialogs/AddTrackDialog.js.map +0 -1
- package/dist/components/dialogs/TabPanel.d.ts +0 -6
- package/dist/components/dialogs/TabPanel.js +0 -6
- package/dist/components/dialogs/TabPanel.js.map +0 -1
- package/dist/components/header/ZoomStar.js +0 -40
- package/dist/components/header/ZoomStar.js.map +0 -1
- package/dist/layout.d.ts +0 -26
- package/dist/layout.js +0 -74
- package/dist/layout.js.map +0 -1
- package/dist/reparseTree.d.ts +0 -2
- package/dist/reparseTree.js +0 -15
- package/dist/reparseTree.js.map +0 -1
- package/src/components/dialogs/AddTrackDialog.tsx +0 -85
- package/src/components/dialogs/TabPanel.tsx +0 -19
- package/src/components/header/ZoomStar.tsx +0 -74
- package/src/createPaletteMap.test.ts +0 -57
- package/src/layout.ts +0 -118
- package/src/reparseTree.ts +0 -18
package/src/model/treeModel.ts
CHANGED
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@@ -8,14 +8,11 @@ import {
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defaultShowBranchLen,
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defaultTreeAreaWidth,
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defaultTreeWidth,
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defaultTreeWidthMatchesArea,
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} from '../constants.ts'
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/**
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* #stateModel Tree
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*/
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function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
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export function TreeModelF() {
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return types
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.model({
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@@ -37,16 +34,11 @@ export function TreeModelF() {
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/**
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* #property
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* width of the tree within the treeArea, px
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* width of the tree within the treeArea, px. automatically synced to
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* fit within treeAreaWidth
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*/
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treeWidth: types.optional(types.number, defaultTreeWidth),
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/**
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* #getter
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* synchronization that matches treeWidth to treeAreaWidth
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*/
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treeWidthMatchesArea: defaultTreeWidthMatchesArea,
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/**
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* #property
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* use "branch length" e.g. evolutionary distance to draw tree branch
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@@ -68,14 +60,6 @@ export function TreeModelF() {
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drawNodeBubbles: defaultDrawNodeBubbles,
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})
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.actions(self => ({
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/**
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* #action
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* synchronize the treewidth and treeareawidth
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*/
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setTreeWidthMatchesArea(arg: boolean) {
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self.treeWidthMatchesArea = arg
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},
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/**
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* #action
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* set tree area width (px)
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